Daniel Lundin commited on
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01c85e1
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1 Parent(s): 9f66cc2

Adding duplicate to GTDB metadata

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  1. testdata/bac120_metadata.tsv +1 -0
testdata/bac120_metadata.tsv CHANGED
@@ -6,3 +6,4 @@ RS_GCF_004296495.1 0 64.89 0 136 k__Bacteria (UID2495) 80 0 186535 93.1203698156
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  RS_GCF_004296515.1 0 81.88 0.62 136 k__Bacteria (UID2495) 80 100 205834 90.9566546913597 1 39376 17.3999885107756 226299 RS_GCF_004296515.1 t d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__Nardonella sp004296515 not type material none f 1 1 226299 226299 226299 2 2892 NZ_AP018160.1 none 0 none none 2892 5341 0 100 AP018160.221162.224066 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;symbionts2;endosymbiont of Pachyrhynchus infernalis 226299 226299 f f t 226299 226299 Complete Genome ASM429651v1 na PRJNA224116 SAMD00080338 none none none 2017-10-21 GCA_004296515.1 none full NARPIN1 none none 1 none endosymbiont of Pachyrhynchus infernalis none na none 1 1 226299 226299 226299 2017/10/21 0 1971488 none NARPIN1 The Open University of Japan 1971488 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__;f__;g__Candidatus Nardonella;s__ d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;g__Candidatus Nardonella;s__endosymbiont of Pachyrhynchus infernalis 0 226299 none none none 226299 0 none 213 1 226299 2 none none none none none none 1552 NZ_AP018160.1 1552 2867 0 100 AP018160.219472.221029 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;endosymbionts;endosymbiont of Pachyrhynchus infernalis 0 19 32 0
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  RS_GCF_004296535.1 0 73.33 0 136 k__Bacteria (UID2495) 80 0 201990 91.880040574779 1 35526 16.1598609904431 219841 RS_GCF_004296535.1 t d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__Nardonella sp004296535 not type material none f 1 1 219841 219841 219841 1 2943 NZ_AP018159.1 none 0 none none 2943 5435 0 100 AP018159.24685.27636 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;Candidatus Purcelliella;endosymbiont of Euscepes postfasciatus 219841 219841 f f t 219841 219841 Complete Genome ASM429653v1 na PRJNA224116 SAMD00080337 none none none 2017-10-21 GCA_004296535.1 none full NAREPO1 none none 1 none endosymbiont of Euscepes postfasciatus none representative genome none 1 1 219841 219841 219841 2017/10/21 0 650377 none NAREPO1 The Open University of Japan 650377 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__;f__;g__;s__ d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__endosymbiont of Euscepes postfasciatus 0 219841 none none none 219841 0 none 215 1 219841 1 none none none none none none 1574 NZ_AP018159.1 1574 2907 0 100 AP018159.27824.29401 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;endosymbionts;endosymbiont of Euscepes postfasciatus 0 18 26 0
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  RS_GCF_004296555.1 0 99.41 0 675 o__Thiotrichales (UID4410) 243 0 1611687 88.6965351002708 101 586098 32.2549364915139 1817080 RS_GCF_000008985.1 f d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella;s__Francisella tularensis not type material none f 17 17 113051 113051 5559 1 2879 NZ_SGWP01000064.1 5559 2 111 NZ_SGWP01000064.1 2879 5317 0 100 GU073995.1.2992 Bacteria;Proteobacteria;Gammaproteobacteria;Francisellales;Francisellaceae;Francisella;Francisella tularensis subsp. mediasiatica FSC147 17990 17990 t f f 35350 35350 Contig ASM429655v1 na PRJNA224116 SAMN10924158 101 35350 none 2019-02-19 GCA_004296555.1 none full none none none 0 none Francisella tularensis subsp. mediasiatica none na none none none none none none 2019/02/19 0 263 none SCPM-O-B-7175(A-554) SRCAMB 135248 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. mediasiatica 0 1817080 none none none 1817080 0 SGWP00000000.1 2037 101 5559 1 none none none none none none 1524 NZ_SGWP01000064.1 1523 2813 0 100 CP000915.1823129.1824652 Bacteria;Proteobacteria;Gammaproteobacteria;Francisellales;Francisellaceae;Francisella;Francisella tularensis subsp. mediasiatica FSC147 0 19 34 0
 
 
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  RS_GCF_004296515.1 0 81.88 0.62 136 k__Bacteria (UID2495) 80 100 205834 90.9566546913597 1 39376 17.3999885107756 226299 RS_GCF_004296515.1 t d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__Nardonella sp004296515 not type material none f 1 1 226299 226299 226299 2 2892 NZ_AP018160.1 none 0 none none 2892 5341 0 100 AP018160.221162.224066 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;symbionts2;endosymbiont of Pachyrhynchus infernalis 226299 226299 f f t 226299 226299 Complete Genome ASM429651v1 na PRJNA224116 SAMD00080338 none none none 2017-10-21 GCA_004296515.1 none full NARPIN1 none none 1 none endosymbiont of Pachyrhynchus infernalis none na none 1 1 226299 226299 226299 2017/10/21 0 1971488 none NARPIN1 The Open University of Japan 1971488 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__;f__;g__Candidatus Nardonella;s__ d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;g__Candidatus Nardonella;s__endosymbiont of Pachyrhynchus infernalis 0 226299 none none none 226299 0 none 213 1 226299 2 none none none none none none 1552 NZ_AP018160.1 1552 2867 0 100 AP018160.219472.221029 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;endosymbionts;endosymbiont of Pachyrhynchus infernalis 0 19 32 0
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  RS_GCF_004296535.1 0 73.33 0 136 k__Bacteria (UID2495) 80 0 201990 91.880040574779 1 35526 16.1598609904431 219841 RS_GCF_004296535.1 t d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__Nardonella sp004296535 not type material none f 1 1 219841 219841 219841 1 2943 NZ_AP018159.1 none 0 none none 2943 5435 0 100 AP018159.24685.27636 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;Candidatus Purcelliella;endosymbiont of Euscepes postfasciatus 219841 219841 f f t 219841 219841 Complete Genome ASM429653v1 na PRJNA224116 SAMD00080337 none none none 2017-10-21 GCA_004296535.1 none full NAREPO1 none none 1 none endosymbiont of Euscepes postfasciatus none representative genome none 1 1 219841 219841 219841 2017/10/21 0 650377 none NAREPO1 The Open University of Japan 650377 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__;f__;g__;s__ d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__endosymbiont of Euscepes postfasciatus 0 219841 none none none 219841 0 none 215 1 219841 1 none none none none none none 1574 NZ_AP018159.1 1574 2907 0 100 AP018159.27824.29401 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;endosymbionts;endosymbiont of Euscepes postfasciatus 0 18 26 0
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  RS_GCF_004296555.1 0 99.41 0 675 o__Thiotrichales (UID4410) 243 0 1611687 88.6965351002708 101 586098 32.2549364915139 1817080 RS_GCF_000008985.1 f d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella;s__Francisella tularensis not type material none f 17 17 113051 113051 5559 1 2879 NZ_SGWP01000064.1 5559 2 111 NZ_SGWP01000064.1 2879 5317 0 100 GU073995.1.2992 Bacteria;Proteobacteria;Gammaproteobacteria;Francisellales;Francisellaceae;Francisella;Francisella tularensis subsp. mediasiatica FSC147 17990 17990 t f f 35350 35350 Contig ASM429655v1 na PRJNA224116 SAMN10924158 101 35350 none 2019-02-19 GCA_004296555.1 none full none none none 0 none Francisella tularensis subsp. mediasiatica none na none none none none none none 2019/02/19 0 263 none SCPM-O-B-7175(A-554) SRCAMB 135248 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. mediasiatica 0 1817080 none none none 1817080 0 SGWP00000000.1 2037 101 5559 1 none none none none none none 1524 NZ_SGWP01000064.1 1523 2813 0 100 CP000915.1823129.1824652 Bacteria;Proteobacteria;Gammaproteobacteria;Francisellales;Francisellaceae;Francisella;Francisella tularensis subsp. mediasiatica FSC147 0 19 34 0
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+ GB_GCA_002688505.1 2 77.08 0 136 k__Bacteria (UID2495) 80 0 243051 89.6288374665806 1 41722 15.3857500562372 271175 GB_GCA_002688505.1 t d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Stammera;s__Stammera capleta_A not type material none f 1 1 271175 271175 271175 1 2927 CP024013.1 271175 1 101 CP024013.1 2920 5393 0 100 CP024013.86157.89078 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;Candidatus Purcelliella;Enterobacteriaceae bacterium NZ1215 271175 271175 f f t 271175 271175 Complete Genome ASM268850v1 na PRJNA413589 SAMN07758087 none none none 2017-10-24 GCA_002688505.1 derived from metagenome full NZ1215 none none 1 none Candidatus Stammera capleta 0 na none 1 1 271175 271175 271175 2017/10/24 0 2608262 none NZ1215 University of Luxembourg 2608262 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Candidatus Stammera;s__Candidatus Stammera capleta d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta 0 271175 none none none 271175 0 none 257 1 271175 1 none none none none none none 1607 CP024013.1 1393 1583 0 87.437 AP018160.219472.221029 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;endosymbionts;endosymbiont of Pachyrhynchus infernalis 0 19 29 0