Merge pull request #1160 from erikrikarddaniel/magmap

testdata/gtdbtk.bac120.summary.tsv

@@ -1,3 +1,3 @@
 user_genome	classification	fastani_reference	fastani_reference_radius	fastani_taxonomy	fastani_ani	fastani_af	closest_placement_reference	closest_placement_radius	closest_placement_taxonomy	closest_placement_ani	closest_placement_af	pplacer_taxonomy	classification_method	note	other_related_references(genome_id,species_name,radius,ANI,AF)	msa_percent	translation_table	red_value	warnings
-GCA_002688505.1_ASM268850v1_genomic	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Stammera;s__Stammera capleta	GCA_002688505.1	95.0	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Stammera;s__Stammera capleta	100.0	0.99	GCA_002688505.1	95.0	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Stammera;s__Stammera capleta	100.0	0.99	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__;s__	taxonomic classification defined by topology and ANI	topological placement and ANI have congruent species assignments	N/A	64.13	4	N/A	N/A
-GCF_004296495.1_ASM429649v1_genomic	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__Nardonella dryophthoridicola	GCF_004296495.1	95.0	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__Nardonella dryophthoridicola	100.0	1.0	GCF_004296495.1	95.0	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__Nardonella dryophthoridicola	100.0	1.0	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__	taxonomic classification defined by topology and ANI	topological placement and ANI have congruent species assignments	GCF_004296515.1, s__Nardonella sp004296515, 95.0, 78.8, 0.58; GCF_004296535.1, s__Nardonella sp004296535, 95.0, 78.65, 0.58; GCF_004296475.1, s__Nardonella sp004296475, 95.0, 78.51, 0.61	49.08	11	N/A	N/A
+GCA_000022305.1	d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae_B;g__Diaphorobacter;s__Diaphorobacter nitroreducens	GCA_003755025.1	95.0	d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae_B;g__Diaphorobacter;s__Diaphorobacter nitroreducens	98.04	0.918	GCA_003755025.1	95.0	d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae_B;g__Diaphorobacter;s__Diaphorobacter nitroreducens	98.04	0.918	d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae_B;g__;s__	taxonomic classification defined by topology and ANI	topological placement and ANI have congruent species assignments	N/A	98.27	11	N/A	N/A
+GCA_002688505.1	d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Stammera;s__Stammera capleta_A	GCA_002688505.1	95.0	d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Stammera;s__Stammera capleta_A	100.0	0.989	GCA_002688505.1	95.0	d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Stammera;s__Stammera capleta_A	100.0	0.989	d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Stammera;s__	taxonomic classification defined by topology and ANI	topological placement and ANI have congruent species assignments	GCA_015134355.1, s__Stammera capleta_L, 95.0, 89.5, 0.977; GCA_015134315.1, s__Stammera capleta_D, 95.0, 86.66, 1.0; GCA_015134375.1, s__Stammera capleta_H, 95.0, 82.73, 0.829; GCA_015134435.1, s__Stammera capleta_K, 95.0, 81.26, 0.676; GCA_015134335.1, s__Stammera capleta_J, 95.0, 80.99, 0.724; GCA_015134395.1, s__Stammera capleta_F, 95.0, 80.53, 0.684; GCA_015140255.1, s__Stammera capleta_E, 95.0, 80.43, 0.644; GCA_015134695.1, s__Stammera capleta_I, 95.0, 80.2, 0.637; GCA_015134415.1, s__Stammera capleta_G, 95.0, 80.11, 0.634; GCA_015134075.1, s__Stammera capleta_B, 95.0, 79.69, 0.667; GCA_015139955.1, s__Stammera capleta_C, 95.0, 79.6, 0.656	64.17	4	N/A	N/A