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hf_public_repos/transformers/examples/research_projects/jax-projects
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hf_public_repos/transformers/examples/research_projects/jax-projects/hybrid_clip/requirements.txt
|
jax>=0.2.8
jaxlib>=0.1.59
flax>=0.3.5
optax>=0.0.8
-f https://download.pytorch.org/whl/torch_stable.html
torch==1.9.0+cpu
-f https://download.pytorch.org/whl/torch_stable.html
torchvision==0.10.0+cpu
| 0 |
hf_public_repos/transformers/examples/research_projects/jax-projects
|
hf_public_repos/transformers/examples/research_projects/jax-projects/hybrid_clip/modeling_hybrid_clip.py
|
# coding=utf-8
# Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Optional, Tuple
import flax.linen as nn
import jax
import jax.numpy as jnp
from configuration_hybrid_clip import HybridCLIPConfig
from flax.core.frozen_dict import FrozenDict
from transformers import FLAX_MODEL_MAPPING, FlaxCLIPVisionModel
from transformers.modeling_flax_utils import FlaxPreTrainedModel
from transformers.models.clip.modeling_flax_clip import FlaxCLIPOutput
from transformers.utils import logging
logger = logging.get_logger(__name__)
class FlaxHybridCLIPModule(nn.Module):
config: HybridCLIPConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
text_config = self.config.text_config
vision_config = self.config.vision_config
self.projection_dim = self.config.projection_dim
self.text_embed_dim = text_config.hidden_size
self.vision_embed_dim = vision_config.hidden_size
text_module = FLAX_MODEL_MAPPING[self.config.text_config.__class__].module_class
vision_module = FLAX_MODEL_MAPPING.get(self.config.vision_config.__class__, FlaxCLIPVisionModel).module_class
self.text_model = text_module(text_config, dtype=self.dtype)
self.vision_model = vision_module(vision_config, dtype=self.dtype)
self.visual_projection = nn.Dense(
self.projection_dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(0.02),
use_bias=False,
)
self.text_projection = nn.Dense(
self.projection_dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(0.02),
use_bias=False,
)
self.logit_scale = self.param("logit_scale", jax.nn.initializers.ones, [])
def __call__(
self,
input_ids=None,
pixel_values=None,
attention_mask=None,
position_ids=None,
token_type_ids=None,
deterministic: bool = True,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
return_dict = return_dict if return_dict is not None else self.config.return_dict
vision_outputs = self.vision_model(
pixel_values=pixel_values,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
text_outputs = self.text_model(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
image_embeds = vision_outputs[1]
image_embeds = self.visual_projection(image_embeds)
text_embeds = text_outputs[1]
text_embeds = self.text_projection(text_embeds)
# normalized features
image_embeds = image_embeds / jnp.linalg.norm(image_embeds, axis=-1, keepdims=True)
text_embeds = text_embeds / jnp.linalg.norm(text_embeds, axis=-1, keepdims=True)
# cosine similarity as logits
logit_scale = jnp.exp(self.logit_scale)
logits_per_text = jnp.matmul(text_embeds, image_embeds.T) * logit_scale
logits_per_image = logits_per_text.T
if not return_dict:
return (logits_per_image, logits_per_text, text_embeds, image_embeds, text_outputs, vision_outputs)
return FlaxCLIPOutput(
logits_per_image=logits_per_image,
logits_per_text=logits_per_text,
text_embeds=text_embeds,
image_embeds=image_embeds,
text_model_output=text_outputs,
vision_model_output=vision_outputs,
)
class FlaxHybridCLIP(FlaxPreTrainedModel):
config_class = HybridCLIPConfig
module_class = FlaxHybridCLIPModule
def __init__(
self,
config: HybridCLIPConfig,
input_shape: Optional[Tuple] = None,
seed: int = 0,
dtype: jnp.dtype = jnp.float32,
**kwargs,
):
if input_shape is None:
input_shape = ((1, 1), (1, config.vision_config.image_size, config.vision_config.image_size, 3))
module = self.module_class(config=config, dtype=dtype, **kwargs)
super().__init__(config, module, input_shape=input_shape, seed=seed, dtype=dtype)
def init_weights(self, rng: jax.random.PRNGKey, input_shape: Tuple, params: FrozenDict = None) -> FrozenDict:
# init input tensor
input_ids = jnp.zeros(input_shape[0], dtype="i4")
position_ids = jnp.broadcast_to(jnp.arange(jnp.atleast_2d(input_ids).shape[-1]), input_shape[0])
token_type_ids = jnp.ones_like(input_ids)
attention_mask = jnp.ones_like(input_ids)
pixel_values = jax.random.normal(rng, input_shape[1])
params_rng, dropout_rng = jax.random.split(rng)
rngs = {"params": params_rng, "dropout": dropout_rng}
return self.module.init(rngs, input_ids, pixel_values, attention_mask, position_ids, token_type_ids)["params"]
def __call__(
self,
input_ids,
pixel_values,
attention_mask=None,
position_ids=None,
token_type_ids=None,
params: dict = None,
dropout_rng: jax.random.PRNGKey = None,
train: bool = False,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
if position_ids is None:
position_ids = jnp.broadcast_to(jnp.arange(jnp.atleast_2d(input_ids).shape[-1]), input_ids.shape)
if token_type_ids is None:
token_type_ids = jnp.zeros_like(input_ids)
if attention_mask is None:
attention_mask = jnp.ones_like(input_ids)
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
return self.module.apply(
{"params": params or self.params},
jnp.array(input_ids, dtype="i4"),
jnp.array(pixel_values, dtype=jnp.float32),
jnp.array(attention_mask, dtype="i4"),
jnp.array(position_ids, dtype="i4"),
jnp.array(token_type_ids, dtype="i4"),
not train,
output_attentions,
output_hidden_states,
return_dict,
rngs=rngs,
)
def get_text_features(
self,
input_ids,
attention_mask=None,
position_ids=None,
token_type_ids=None,
params: dict = None,
dropout_rng: jax.random.PRNGKey = None,
train=False,
):
r"""
Args:
input_ids (:obj:`numpy.ndarray` of shape :obj:`(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it.
Indices can be obtained using :class:`~transformers.PreTrainedTokenizer`. See
:meth:`transformers.PreTrainedTokenizer.encode` and :meth:`transformers.PreTrainedTokenizer.__call__`
for details.
`What are input IDs? <../glossary.html#input-ids>`__
Returns:
text_features (:obj:`jnp.ndarray` of shape :obj:`(batch_size, output_dim`): The text embeddings
obtained by applying the projection layer to the pooled output of text model.
"""
if position_ids is None:
position_ids = jnp.broadcast_to(jnp.arange(jnp.atleast_2d(input_ids).shape[-1]), input_ids.shape)
if token_type_ids is None:
token_type_ids = jnp.zeros_like(input_ids)
if attention_mask is None:
attention_mask = jnp.ones_like(input_ids)
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
def _get_features(module, input_ids, attention_mask, position_ids, token_type_ids, deterministic):
text_outputs = module.text_model(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
token_type_ids=token_type_ids,
deterministic=deterministic,
)
pooled_output = text_outputs[1]
text_features = module.text_projection(pooled_output)
return text_features
return self.module.apply(
{"params": params or self.params},
jnp.array(input_ids, dtype="i4"),
jnp.array(attention_mask, dtype="i4"),
jnp.array(position_ids, dtype="i4"),
jnp.array(token_type_ids, dtype="i4"),
not train,
method=_get_features,
rngs=rngs,
)
def get_image_features(
self, pixel_values, params: dict = None, dropout_rng: jax.random.PRNGKey = None, train=False
):
r"""
Args:
pixel_values (:obj:`numpy.ndarray` of shape :obj:`(batch_size, num_channels, height, width)`):
Pixel values. Padding will be ignored by default should you provide it. Pixel values can be obtained
using :class:`~transformers.ImageFeatureExtractionMixin`. See
:meth:`transformers.ImageFeatureExtractionMixin.__call__` for details.
Returns:
image_features (:obj:`jnp.ndarray` of shape :obj:`(batch_size, output_dim`): The image embeddings
obtained by applying the projection layer to the pooled output of vision model.
"""
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
def _get_features(module, pixel_values, deterministic):
vision_outputs = module.vision_model(pixel_values=pixel_values, deterministic=deterministic)
pooled_output = vision_outputs[1] # pooled_output
image_features = module.visual_projection(pooled_output)
return image_features
return self.module.apply(
{"params": params or self.params},
jnp.array(pixel_values, dtype=jnp.float32),
not train,
method=_get_features,
rngs=rngs,
)
@classmethod
def from_text_vision_pretrained(
cls,
text_model_name_or_path: str = None,
vision_model_name_or_path: str = None,
*model_args,
**kwargs,
) -> FlaxPreTrainedModel:
"""
Params:
text_model_name_or_path (:obj: `str`, `optional`):
Information necessary to initiate the text model. Can be either:
- A string, the `model id` of a pretrained model hosted inside a model repo on huggingface.co.
Valid model ids can be located at the root-level, like ``bert-base-uncased``, or namespaced under
a user or organization name, like ``dbmdz/bert-base-german-cased``.
- A path to a `directory` containing model weights saved using
:func:`~transformers.FlaxPreTrainedModel.save_pretrained`, e.g., ``./my_model_directory/``.
- A path or url to a `PyTorch checkpoint folder` (e.g, ``./pt_model``). In
this case, ``from_pt`` should be set to :obj:`True` and a configuration object should be provided
as ``config`` argument. This loading path is slower than converting the PyTorch checkpoint in
a Flax model using the provided conversion scripts and loading the Flax model afterwards.
vision_model_name_or_path (:obj: `str`, `optional`, defaults to `None`):
Information necessary to initiate the vision model. Can be either:
- A string, the `model id` of a pretrained model hosted inside a model repo on huggingface.co.
Valid model ids can be located at the root-level, like ``bert-base-uncased``, or namespaced under
a user or organization name, like ``dbmdz/bert-base-german-cased``.
- A path to a `directory` containing model weights saved using
:func:`~transformers.FlaxPreTrainedModel.save_pretrained`, e.g., ``./my_model_directory/``.
- A path or url to a `PyTorch checkpoint folder` (e.g, ``./pt_model``). In
this case, ``from_pt`` should be set to :obj:`True` and a configuration object should be provided
as ``config`` argument. This loading path is slower than converting the PyTorch checkpoint in
a Flax model using the provided conversion scripts and loading the Flax model afterwards.
model_args (remaining positional arguments, `optional`):
All remaning positional arguments will be passed to the underlying model's ``__init__`` method.
kwargs (remaining dictionary of keyword arguments, `optional`):
Can be used to update the configuration object (after it being loaded) and initiate the model (e.g.,
:obj:`output_attentions=True`).
- To update the text configuration, use the prefix `text_` for each configuration parameter.
- To update the vision configuration, use the prefix `vision_` for each configuration parameter.
- To update the parent model configuration, do not use a prefix for each configuration parameter.
Behaves differently depending on whether a :obj:`config` is provided or automatically loaded.
Example::
>>> from transformers import FlaxHybridCLIP
>>> # initialize a model from pretrained BERT and CLIP models. Note that the projection layers will be randomly initialized.
>>> # If using CLIP's vision model the vision projection layer will be initialized using pre-trained weights
>>> model = FlaxHybridCLIP.from_text_vision_pretrained('bert-base-uncased', 'openai/clip-vit-base-patch32')
>>> # saving model after fine-tuning
>>> model.save_pretrained("./bert-clip")
>>> # load fine-tuned model
>>> model = FlaxHybridCLIP.from_pretrained("./bert-clip")
"""
kwargs_text = {
argument[len("text_") :]: value for argument, value in kwargs.items() if argument.startswith("text_")
}
kwargs_vision = {
argument[len("vision_") :]: value for argument, value in kwargs.items() if argument.startswith("vision_")
}
# remove text, vision kwargs from kwargs
for key in kwargs_text.keys():
del kwargs["text_" + key]
for key in kwargs_vision.keys():
del kwargs["vision_" + key]
# Load and initialize the text and vision model
text_model = kwargs_text.pop("model", None)
if text_model is None:
assert (
text_model_name_or_path is not None
), "If `model` is not defined as an argument, a `text_model_name_or_path` has to be defined"
from transformers import FlaxAutoModel
if "config" not in kwargs_text:
from transformers import AutoConfig
text_config = AutoConfig.from_pretrained(text_model_name_or_path)
kwargs_text["config"] = text_config
text_model = FlaxAutoModel.from_pretrained(text_model_name_or_path, *model_args, **kwargs_text)
vision_model = kwargs_vision.pop("model", None)
if vision_model is None:
assert (
vision_model_name_or_path is not None
), "If `model` is not defined as an argument, a `vision_model_name_or_path` has to be defined"
from transformers import FlaxAutoModel
if "config" not in kwargs_vision:
from transformers import AutoConfig
vision_config = AutoConfig.from_pretrained(vision_model_name_or_path)
kwargs_vision["config"] = vision_config
vision_model = FlaxAutoModel.from_pretrained(vision_model_name_or_path, *model_args, **kwargs_vision)
# instantiate config with corresponding kwargs
dtype = kwargs.pop("dtype", jnp.float32)
config = HybridCLIPConfig.from_text_vision_configs(text_model.config, vision_model.config, **kwargs)
# init model
model = cls(config, *model_args, dtype=dtype, **kwargs)
if vision_config.model_type == "clip":
model.params["vision_model"]["vision_model"] = vision_model.params["vision_model"]
model.params["visual_projection"]["kernel"] = vision_model.params["visual_projection"]["kernel"]
else:
model.params["vision_model"] = vision_model.params
model.params["text_model"] = text_model.params
return model
| 0 |
hf_public_repos/transformers/examples/research_projects/jax-projects
|
hf_public_repos/transformers/examples/research_projects/jax-projects/wav2vec2/run_wav2vec2_pretrain_flax.py
|
#!/usr/bin/env python3
import logging
import sys
import time
from dataclasses import field
from pathlib import Path
from typing import Dict, List, Optional, Union
import flax
import jax
import jax.numpy as jnp
import librosa
import numpy as np
import optax
from datasets import DatasetDict, load_dataset
from flax import jax_utils, traverse_util
from flax.training import train_state
from flax.training.common_utils import get_metrics, onehot, shard
from tqdm import tqdm
from transformers import (
FlaxWav2Vec2ForPreTraining,
HfArgumentParser,
TrainingArguments,
Wav2Vec2Config,
Wav2Vec2FeatureExtractor,
is_tensorboard_available,
)
from transformers.models.wav2vec2.modeling_flax_wav2vec2 import _compute_mask_indices, _sample_negative_indices
logger = logging.getLogger(__name__)
@flax.struct.dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
freeze_feature_extractor: Optional[bool] = field(
default=True, metadata={"help": "Whether to freeze the feature extractor layers of the model."}
)
verbose_logging: Optional[bool] = field(
default=False,
metadata={"help": "Whether to log verbose messages or not."},
)
max_gumbel_temperature: Optional[float] = field(
default=2.0, metadata={"help": "Maximum temperature for gumbel softmax."}
)
min_gumbel_temperature: Optional[float] = field(
default=0.1, metadata={"help": "Minimum temperature for gumbel softmax."}
)
gumbel_temperature_decay: Optional[float] = field(
default=0.999995, metadata={"help": "Decay of gumbel temperature during training."}
)
dtype: Optional[str] = field(
default="float32",
metadata={
"help": (
"Floating-point format in which the model weights should be initialized and trained. Choose one of"
" `[float32, float16, bfloat16]`."
)
},
)
@flax.struct.dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
Using `HfArgumentParser` we can turn this class
into argparse arguments to be able to specify them on
the command line.
"""
dataset_name: str = field(
default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_split_name: Optional[str] = field(
default="train",
metadata={
"help": "The name of the training data set split to use (via the datasets library). Defaults to 'train'"
},
)
validation_split_name: Optional[str] = field(
default="validation",
metadata={
"help": (
"The name of the validation data set split to use (via the datasets library). Defaults to 'validation'"
)
},
)
speech_file_column: Optional[str] = field(
default="file",
metadata={"help": "Column in the dataset that contains speech file path. Defaults to 'file'"},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached preprocessed datasets or not."}
)
validation_split_percentage: Optional[int] = field(
default=5,
metadata={
"help": "The percentage of the train set used as validation set in case there's no validation split"
},
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
max_duration_in_seconds: Optional[float] = field(
default=20.0, metadata={"help": "Filter audio files that are longer than `max_duration_in_seconds` seconds"}
)
pad_to_multiple_of: Optional[int] = field(
default=1024,
metadata={
"help": (
"If set will pad the sequence to a multiple of the provided value. This is important to avoid"
" triggering recompilations on TPU"
)
},
)
@flax.struct.dataclass
class FlaxDataCollatorForWav2Vec2Pretraining:
"""
Data collator that will dynamically pad the inputs received and prepare masked indices
for self-supervised pretraining.
Args:
model (:class:`~transformers.FlaxWav2Vec2ForPreTraining`):
The Wav2Vec2 model used for pretraining. The data collator needs to have access
to config and ``_get_feat_extract_output_lengths`` function for correct padding.
feature_extractor (:class:`~transformers.Wav2Vec2FeatureExtractor`):
The processor used for proccessing the data.
padding (:obj:`bool`, :obj:`str` or :class:`~transformers.tokenization_utils_base.PaddingStrategy`, `optional`, defaults to :obj:`True`):
Select a strategy to pad the returned sequences (according to the model's padding side and padding index)
among:
* :obj:`True` or :obj:`'longest'`: Pad to the longest sequence in the batch (or no padding if only a single
sequence if provided).
* :obj:`'max_length'`: Pad to a maximum length specified with the argument :obj:`max_length` or to the
maximum acceptable input length for the model if that argument is not provided.
* :obj:`False` or :obj:`'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of
different lengths).
max_length (:obj:`int`, `optional`):
Maximum length of the ``input_values`` of the returned list and optionally padding length (see above).
pad_to_multiple_of (:obj:`int`, `optional`):
If set will pad the sequence to a multiple of the provided value.
This is especially useful to enable the use of Tensor Cores on NVIDIA hardware with compute capability >=
7.5 (Volta).
"""
model: FlaxWav2Vec2ForPreTraining
feature_extractor: Wav2Vec2FeatureExtractor
padding: Union[bool, str] = "longest"
pad_to_multiple_of: Optional[int] = None
max_length: Optional[int] = None
def __call__(self, features: List[Dict[str, Union[List[int], np.ndarray]]]) -> Dict[str, np.ndarray]:
# reformat list to dict and set to pytorch format
batch = self.feature_extractor.pad(
features,
max_length=self.max_length,
padding=self.padding,
pad_to_multiple_of=self.pad_to_multiple_of,
return_tensors="np",
)
mask_indices_seq_length = self.model._get_feat_extract_output_lengths(batch["input_values"].shape[-1])
batch_size = batch["input_values"].shape[0]
attention_mask = None
if batch["attention_mask"] is not None:
output_lengths = self.model._get_feat_extract_output_lengths(batch["attention_mask"].sum(-1))
attention_mask = np.zeros((batch_size, mask_indices_seq_length), dtype=np.int8)
# these two operations makes sure that all values
# before the output lengths indices are attended to
attention_mask[(np.arange(attention_mask.shape[0]), output_lengths - 1)] = 1
attention_mask = jnp.flip(jnp.flip(attention_mask, -1).cumsum(-1), -1).astype("bool")
# sample randomly masked indices
batch["mask_time_indices"] = _compute_mask_indices(
(batch_size, mask_indices_seq_length),
self.model.config.mask_time_prob,
self.model.config.mask_time_length,
attention_mask=attention_mask,
min_masks=2,
)
# sample indices to take for negative vectors
batch["sampled_negative_indices"] = _sample_negative_indices(
(batch["mask_time_indices"].shape + (self.model.config.proj_codevector_dim,)),
self.model.config.num_negatives,
attention_mask=attention_mask,
)
return batch
def configure_logger(model_args: ModelArguments, training_args: TrainingArguments):
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
logging_level = logging.WARNING
if model_args.verbose_logging:
logging_level = logging.DEBUG
logger.setLevel(logging_level)
def write_train_metric(summary_writer, train_metrics, train_time, step):
summary_writer.scalar("train_time", train_time, step)
train_metrics = get_metrics(train_metrics)
for key, vals in train_metrics.items():
tag = f"train_{key}"
for i, val in enumerate(vals):
summary_writer.scalar(tag, val, step - len(vals) + i + 1)
def write_eval_metric(summary_writer, eval_metrics, step):
for metric_name, value in eval_metrics.items():
summary_writer.scalar(f"eval_{metric_name}", value, step)
def generate_batch_splits(samples_idx: np.ndarray, batch_size: int) -> np.ndarray:
num_samples = len(samples_idx)
samples_to_remove = num_samples % batch_size
if samples_to_remove != 0:
samples_idx = samples_idx[:-samples_to_remove]
sections_split = num_samples // batch_size
batch_idx = np.split(samples_idx, sections_split)
return batch_idx
def compute_contrastive_loss(
quantized_features, transformer_features, negative_indices, mask_time_indices, logits_temp, num_negatives
):
batch_size, sequence_length, hidden_size = quantized_features.shape
# take negative vectors from sampled indices
quantized_negatives = quantized_features.reshape(-1, hidden_size)[negative_indices.reshape(-1)]
quantized_negatives = quantized_negatives.reshape(
batch_size, sequence_length, num_negatives, hidden_size
).transpose(2, 0, 1, 3)
target_features = jnp.concatenate([quantized_features[None, :], quantized_negatives], axis=0)
loss_logits = optax.cosine_similarity(transformer_features, target_features)
loss_logits = loss_logits / logits_temp
neg_is_pos = (quantized_features == quantized_negatives).all(-1)
neg_is_pos = jnp.concatenate([jnp.full((1,) + loss_logits.shape[1:], False), neg_is_pos], axis=0)
# make sure incorrectly sampled vectors don't contribute to loss
loss_logits = jnp.where(neg_is_pos, -1e9, loss_logits)
predictions = loss_logits.transpose(2, 1, 0).reshape(-1, loss_logits.shape[0])
targets = ((1 - mask_time_indices) * -100).transpose(1, 0).flatten()
target_mask = jnp.where(targets >= 0, 1.0, 0.0)
contrastive_loss = optax.softmax_cross_entropy(predictions, onehot(targets, predictions.shape[-1])) * target_mask
contrastive_loss = contrastive_loss.sum()
return contrastive_loss
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
configure_logger(model_args, training_args)
# Downloading and loading a dataset from the hub.
datasets = load_dataset(data_args.dataset_name, data_args.dataset_config_name, cache_dir=model_args.cache_dir)
if "validation" not in datasets.keys():
# make sure only "validation" and "train" keys remain"
datasets = DatasetDict()
datasets["validation"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"{data_args.train_split_name}[:{data_args.validation_split_percentage}%]",
cache_dir=model_args.cache_dir,
)
datasets["train"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"{data_args.train_split_name}[{data_args.validation_split_percentage}%:]",
cache_dir=model_args.cache_dir,
)
else:
# make sure only "validation" and "train" keys remain"
datasets = DatasetDict()
datasets["validation"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split="validation",
cache_dir=model_args.cache_dir,
)
datasets["train"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"{data_args.train_split_name}",
cache_dir=model_args.cache_dir,
)
# only normalized-inputs-training is supported
feature_extractor = Wav2Vec2FeatureExtractor.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, do_normalize=True
)
def prepare_dataset(batch):
# check that all files have the correct sampling rate
batch["speech"], _ = librosa.load(batch[data_args.speech_file_column], sr=feature_extractor.sampling_rate)
return batch
# load audio files into numpy arrays
vectorized_datasets = datasets.map(
prepare_dataset, num_proc=data_args.preprocessing_num_workers, remove_columns=datasets["train"].column_names
)
# filter audio files that are too long
vectorized_datasets = vectorized_datasets.filter(
lambda data: len(data["speech"]) < int(data_args.max_duration_in_seconds * feature_extractor.sampling_rate)
)
def normalize(batch):
return feature_extractor(batch["speech"], sampling_rate=feature_extractor.sampling_rate)
# normalize and transform to `BatchFeatures`
vectorized_datasets = vectorized_datasets.map(
normalize,
batched=True,
num_proc=data_args.preprocessing_num_workers,
load_from_cache_file=not data_args.overwrite_cache,
remove_columns=vectorized_datasets["train"].column_names,
)
# pretraining is only supported for "newer" stable layer norm architecture
# apply_spec_augment has to be True, mask_feature_prob has to be 0.0
config = Wav2Vec2Config.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
)
if not config.do_stable_layer_norm or config.feat_extract_norm != "layer":
raise ValueError(
"PreTraining is only supported for ``config.do_stable_layer_norm=True`` and"
" ``config.feat_extract_norm='layer'"
)
model = FlaxWav2Vec2ForPreTraining(config, seed=training_args.seed, dtype=getattr(jnp, model_args.dtype))
# Activate gradient checkpointing if needed
if training_args.gradient_checkpointing:
model.gradient_checkpointing_enable()
data_collator = FlaxDataCollatorForWav2Vec2Pretraining(
model=model, feature_extractor=feature_extractor, pad_to_multiple_of=data_args.pad_to_multiple_of
)
# Enable tensorboard only on the master node
has_tensorboard = is_tensorboard_available()
if has_tensorboard and jax.process_index() == 0:
try:
from flax.metrics.tensorboard import SummaryWriter
summary_writer = SummaryWriter(log_dir=Path(training_args.output_dir))
except ImportError as ie:
has_tensorboard = False
logger.warning(
f"Unable to display metrics through TensorBoard because some package are not installed: {ie}"
)
else:
logger.warning(
"Unable to display metrics through TensorBoard because the package is not installed: "
"Please run pip install tensorboard to enable."
)
# Initialize our training
rng = jax.random.PRNGKey(training_args.seed)
dropout_rngs = jax.random.split(rng, jax.local_device_count())
gumbel_rngs = jax.random.split(rng, jax.local_device_count())
num_epochs = int(training_args.num_train_epochs)
train_batch_size = int(training_args.per_device_train_batch_size) * jax.device_count()
eval_batch_size = int(training_args.per_device_eval_batch_size) * jax.device_count()
num_train_steps = len(vectorized_datasets["train"]) // train_batch_size * num_epochs
# Create learning rate schedule
warmup_fn = optax.linear_schedule(
init_value=0.0, end_value=training_args.learning_rate, transition_steps=training_args.warmup_steps
)
decay_fn = optax.linear_schedule(
init_value=training_args.learning_rate,
end_value=0,
transition_steps=num_train_steps - training_args.warmup_steps,
)
linear_decay_lr_schedule_fn = optax.join_schedules(
schedules=[warmup_fn, decay_fn], boundaries=[training_args.warmup_steps]
)
# We use Optax's "masking" functionality to not apply weight decay
# to bias and LayerNorm scale parameters. decay_mask_fn returns a
# mask boolean with the same structure as the parameters.
# The mask is True for parameters that should be decayed.
def decay_mask_fn(params):
flat_params = traverse_util.flatten_dict(params)
flat_mask = {
path: (path[-1] != "bias" and path[-2:] not in [("layer_norm", "scale"), ("final_layer_norm", "scale")])
for path in flat_params
}
return traverse_util.unflatten_dict(flat_mask)
# create adam optimizer
adamw = optax.adamw(
learning_rate=linear_decay_lr_schedule_fn,
b1=training_args.adam_beta1,
b2=training_args.adam_beta2,
eps=training_args.adam_epsilon,
weight_decay=training_args.weight_decay,
mask=decay_mask_fn,
)
# Setup train state and define training hyper-parameters
state = train_state.TrainState.create(apply_fn=model.__call__, params=model.params, tx=adamw)
num_negatives = model.config.num_negatives
contrastive_logits_temperature = model.config.contrastive_logits_temperature
num_codevectors = model.config.num_codevectors_per_group * model.config.num_codevector_groups
diversity_loss_weight = model.config.diversity_loss_weight
# Define gradient update step fn
def train_step(state, batch, dropout_rng, gumbel_rng):
dropout_rng, new_dropout_rng = jax.random.split(dropout_rng)
gumbel_rng, new_gumbel_rng = jax.random.split(gumbel_rng)
def loss_fn(params):
negative_indices = batch.pop("sampled_negative_indices")
gumbel_temperature = jnp.clip(
model_args.max_gumbel_temperature * model_args.gumbel_temperature_decay**state.step,
a_min=model_args.min_gumbel_temperature,
)
outputs = state.apply_fn(
**batch,
gumbel_temperature=gumbel_temperature,
params=params,
dropout_rng=dropout_rng,
gumbel_rng=gumbel_rng,
train=True,
)
contrastive_loss = compute_contrastive_loss(
outputs.projected_quantized_states,
outputs.projected_states,
negative_indices,
batch["mask_time_indices"],
contrastive_logits_temperature,
num_negatives,
)
diversity_loss = (num_codevectors - outputs.codevector_perplexity) / num_codevectors
loss = contrastive_loss + diversity_loss_weight * diversity_loss
return loss
grad_fn = jax.value_and_grad(loss_fn)
loss, grad = grad_fn(state.params)
grad = jax.lax.pmean(grad, "batch")
new_state = state.apply_gradients(grads=grad)
metrics = jax.lax.pmean(
{"loss": loss, "learning_rate": linear_decay_lr_schedule_fn(state.step)}, axis_name="batch"
)
return new_state, metrics, new_dropout_rng, new_gumbel_rng
# Create parallel version of the train step
p_train_step = jax.pmap(train_step, "batch", donate_argnums=(0,))
# Define eval fn
def eval_step(params, batch):
negative_indices = batch.pop("sampled_negative_indices")
outputs = model(**batch, params=params, train=False)
contrastive_loss = compute_contrastive_loss(
outputs.projected_quantized_states,
outputs.projected_states,
negative_indices,
batch["mask_time_indices"],
contrastive_logits_temperature,
num_negatives,
)
diversity_loss = (num_codevectors - outputs.codevector_perplexity) / num_codevectors
loss = contrastive_loss + diversity_loss_weight * diversity_loss
# summarize metrics
metrics = {"loss": loss.mean(), "codevector_perplexity": outputs.codevector_perplexity}
metrics = jax.lax.pmean(metrics, axis_name="batch")
return metrics
p_eval_step = jax.pmap(eval_step, "batch", donate_argnums=(0,))
# Replicate the train state on each device
state = jax_utils.replicate(state)
train_time = 0
train_metrics = []
epochs = tqdm(range(num_epochs), desc=f"Epoch ... (1/{num_epochs})", position=0)
for epoch in epochs:
# ======================== Training ================================
train_start = time.time()
# Create sampling rng
rng, input_rng = jax.random.split(rng)
# Generate an epoch by shuffling sampling indices from the train dataset
num_train_samples = len(vectorized_datasets["train"])
# Avoid using jax.numpy here in case of TPU training
train_samples_idx = np.random.permutation(np.arange(num_train_samples))
train_batch_idx = generate_batch_splits(train_samples_idx, train_batch_size)
# Gather the indexes for creating the batch and do a training step
for step, batch_idx in enumerate(tqdm(train_batch_idx, desc="Training...", position=1)):
samples = [vectorized_datasets["train"][int(idx)] for idx in batch_idx]
model_inputs = data_collator(samples)
model_inputs = shard(model_inputs.data)
# Model forward
state, train_metric, dropout_rngs, gumbel_rngs = p_train_step(
state, model_inputs, dropout_rngs, gumbel_rngs
)
train_metrics.append(train_metric)
cur_step = epoch * (num_train_samples // train_batch_size) + step
if cur_step % training_args.logging_steps == 0 and cur_step > 0:
# Save metrics
train_metric = jax_utils.unreplicate(train_metric)
train_time += time.time() - train_start
if has_tensorboard and jax.process_index() == 0:
write_train_metric(summary_writer, train_metrics, train_time, cur_step)
epochs.write(
f"Step... ({cur_step} | Loss: {train_metric['loss'].mean()}, Learning Rate:"
f" {train_metric['learning_rate'].mean()})"
)
train_metrics = []
# ======================== Evaluating ==============================
num_eval_samples = len(vectorized_datasets["validation"])
# Avoid using jax.numpy here in case of TPU training
eval_samples_idx = np.arange(num_eval_samples)
eval_batch_idx = generate_batch_splits(eval_samples_idx, eval_batch_size)
eval_metrics = []
for i, batch_idx in enumerate(tqdm(eval_batch_idx, desc="Evaluating ...", position=2)):
samples = [vectorized_datasets["validation"][int(idx)] for idx in batch_idx]
model_inputs = data_collator(samples)
# Model forward
model_inputs = shard(model_inputs.data)
metrics = p_eval_step(state.params, model_inputs)
eval_metrics.append(metrics)
# get eval metrics
eval_metrics = get_metrics(eval_metrics)
eval_metrics = jax.tree_util.tree_map(jnp.mean, eval_metrics)
# Update progress bar
epochs.write(
f"Epoch... ({epoch + 1}/{num_epochs} | Loss: {eval_metrics['loss']}, Perplexity:"
f" {eval_metrics['codevector_perplexity']})"
)
# Save metrics
if has_tensorboard and jax.process_index() == 0:
cur_step = epoch * (len(vectorized_datasets["train"]) // train_batch_size)
write_eval_metric(summary_writer, eval_metrics, cur_step)
# save checkpoint after each epoch and push checkpoint to the hub
if jax.process_index() == 0:
params = jax.device_get(jax.tree_util.tree_map(lambda x: x[0], state.params))
model.save_pretrained(training_args.output_dir, params=params, push_to_hub=training_args.push_to_hub)
if __name__ == "__main__":
main()
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|
hf_public_repos/transformers/examples/research_projects/jax-projects/wav2vec2/README.md
|
# Wav2Vec2 Contrastive Loss PreTraining examples
The following example showcases how to pretrain a wav2vec2 model using the JAX/Flax backend.
Pretraining Wav2Vec2 is rather complex, so it is highly recommended to read the
[official paper](https://arxiv.org/abs/2006.11477).
JAX/Flax allows you to trace pure functions and compile them into efficient, fused accelerator code on both GPU and TPU.
Models written in JAX/Flax are **immutable** and updated in a purely functional
way which enables simple and efficient model parallelism.
`run_wav2vec2_pretrain_flax.py` is a lightweight example of how to download and preprocess a dataset from the 🤗 Datasets library or use your own files (jsonlines or csv), then pretrain the wav2vec2 architectures above on it.
For custom datasets in `jsonlines` format please see: [the Datasets documentation](https://huggingface.co/docs/datasets/loading_datasets#json-files) and you also will find examples of these below.
Let's start by creating a model repository to save the trained model and logs.
Here we call the model `"wav2vec2-base-robust"`, but you can change the model name as you like.
You can do this either directly on [huggingface.co](https://huggingface.co/new) (assuming that
you are logged in) or via the command line:
```
huggingface-cli repo create wav2vec2-base-robust
```
Next we clone the model repository to add the tokenizer and model files.
```
git clone https://huggingface.co/<your-username>/wav2vec2-base-robust
```
To ensure that all tensorboard traces will be uploaded correctly, we need to
track them. You can run the following command inside your model repo to do so.
```
cd wav2vec2-base-robust
git lfs track "*tfevents*"
```
Great, we have set up our model repository. During training, we will automatically
push the training logs and model weights to the repo.
Next, let's add a symbolic link to the `run_wav2vec2_pretrain_flax`.
```bash
export MODEL_DIR="./wav2vec2-base-robust"
ln -s ~/transformers/examples/research_projects/jax-projects/wav2vec2/run_wav2vec2_pretrain_flax.py ./
```
### Create the model configuration
Let's first create the model configuration and store it in the model repository.
Note that many training parameters can be set in the model configuration including
the configuration about the masking distribution (`mask_time_length`, `mask_time_prob`),
dropout (`attention_dropout`, ...), the trade-off between the contrastive loss and
the diversity loss, etc...
Mostly likely you will need to change these parameters depending on your use case.
Again, we highly recommend to read the [official paper](https://arxiv.org/abs/2006.11477)
to better understand which parameters can be set for pretraining.
For this example, we will be using a `"base"`-sized model of Wav2Vec2 with robust
layer norm and keep most of the default settings.
```python
model_dir="./wav2vec2-base-robust"
from transformers import Wav2Vec2Config
config = Wav2Vec2Config.from_pretrained(
"facebook/wav2vec2-base",
mask_time_length=10,
mask_time_prob=0.05,
diversity_loss_weight=0.1,
num_negatives=100,
do_stable_layer_norm=True,
feat_extract_norm="layer",
)
config.save_pretrained(model_dir)
```
### Create a feature extractor configuration
Before we can start the training, we need to define
a feature extractor that takes care of normalization, etc...
Here we can also re-use the feature extractor of [wav2vec2-base-960h](https://huggingface.co/facebook/wav2vec2-base) while making sure that padding is allowed.
```python
model_dir="./wav2vec2-base-robust"
from transformers import Wav2Vec2FeatureExtractor
config = Wav2Vec2FeatureExtractor.from_pretrained("facebook/wav2vec2-base", return_attention_mask=True)
config.save_pretrained(model_dir)
```
### Train the model
Finally, we can run the example script to train the model:
```bash
./run_wav2vec2_pretrain_flax.py \
--output_dir=${MODEL_DIR} \
--num_train_epochs="5" \
--per_device_train_batch_size="32" \
--per_device_eval_batch_size="32" \
--learning_rate="5e-4" \
--weight_decay="0.01" \
--warmup_steps="2000" \
--model_name_or_path=${MODEL_DIR} \
--dataset_name="librispeech_asr" \
--dataset_config_name="clean" \
--train_split_name="train.100" \
--preprocessing_num_workers="4" \
--max_duration_in_seconds="10.0" \
--adam_beta1="0.9" \
--adam_beta2="0.98" \
--pad_to_multiple_of="16384" \
--push_to_hub
```
Note that this script is not fully tested yet, so we cannot ensure that
the above script leads to satisfying results.
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hf_public_repos/transformers/examples/research_projects/luke/README.md
|
# Token classification
## PyTorch version, no Trainer
Fine-tuning (m)LUKE for token classification task such as Named Entity Recognition (NER), Parts-of-speech
tagging (POS) or phrase extraction (CHUNKS). You can easily
customize it to your needs if you need extra processing on your datasets.
It will either run on a datasets hosted on our [hub](https://huggingface.co/datasets) or with your own text files for
training and validation, you might just need to add some tweaks in the data preprocessing.
The script can be run in a distributed setup, on TPU and supports mixed precision by
the mean of the [🤗 `Accelerate`](https://github.com/huggingface/accelerate) library. You can use the script normally
after installing it:
```bash
pip install git+https://github.com/huggingface/accelerate
```
then to train English LUKE on CoNLL2003:
```bash
export TASK_NAME=ner
python run_luke_ner_no_trainer.py \
--model_name_or_path studio-ousia/luke-base \
--dataset_name conll2003 \
--task_name $TASK_NAME \
--max_length 128 \
--per_device_train_batch_size 32 \
--learning_rate 2e-5 \
--num_train_epochs 3 \
--output_dir /tmp/$TASK_NAME/
```
You can then use your usual launchers to run in it in a distributed environment, but the easiest way is to run
```bash
accelerate config
```
and reply to the questions asked. Then
```bash
accelerate test
```
that will check everything is ready for training. Finally, you can launch training with
```bash
export TASK_NAME=ner
accelerate launch run_ner_no_trainer.py \
--model_name_or_path studio-ousia/luke-base \
--dataset_name conll2003 \
--task_name $TASK_NAME \
--max_length 128 \
--per_device_train_batch_size 32 \
--learning_rate 2e-5 \
--num_train_epochs 3 \
--output_dir /tmp/$TASK_NAME/
```
This command is the same and will work for:
- a CPU-only setup
- a setup with one GPU
- a distributed training with several GPUs (single or multi node)
- a training on TPUs
Note that this library is in alpha release so your feedback is more than welcome if you encounter any problem using it.
| 0 |
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hf_public_repos/transformers/examples/research_projects/luke/luke_utils.py
|
import unicodedata
from dataclasses import dataclass
from typing import Optional, Union
import numpy as np
from transformers.data.data_collator import DataCollatorMixin
from transformers.file_utils import PaddingStrategy
from transformers.tokenization_utils_base import PreTrainedTokenizerBase
def padding_tensor(sequences, padding_value, padding_side, sequence_length):
if isinstance(padding_value, tuple):
out_tensor = np.full((len(sequences), sequence_length, 2), padding_value)
else:
out_tensor = np.full((len(sequences), sequence_length), padding_value)
for i, tensor in enumerate(sequences):
if padding_side == "right":
if isinstance(padding_value, tuple):
out_tensor[i, : len(tensor[:sequence_length]), :2] = tensor[:sequence_length]
else:
out_tensor[i, : len(tensor[:sequence_length])] = tensor[:sequence_length]
else:
if isinstance(padding_value, tuple):
out_tensor[i, len(tensor[:sequence_length]) - 1 :, :2] = tensor[:sequence_length]
else:
out_tensor[i, len(tensor[:sequence_length]) - 1 :] = tensor[:sequence_length]
return out_tensor.tolist()
def is_punctuation(char):
cp = ord(char)
if (cp >= 33 and cp <= 47) or (cp >= 58 and cp <= 64) or (cp >= 91 and cp <= 96) or (cp >= 123 and cp <= 126):
return True
cat = unicodedata.category(char)
if cat.startswith("P"):
return True
return False
@dataclass
class DataCollatorForLukeTokenClassification(DataCollatorMixin):
"""
Data collator that will dynamically pad the inputs received, as well as the labels.
Args:
tokenizer ([`PreTrainedTokenizer`] or [`PreTrainedTokenizerFast`]):
The tokenizer used for encoding the data.
padding (`bool`, `str` or [`~file_utils.PaddingStrategy`], *optional*, defaults to `True`):
Select a strategy to pad the returned sequences (according to the model's padding side and padding index)
among:
- `True` or `'longest'`: Pad to the longest sequence in the batch (or no padding if only a single
sequence if provided).
- `'max_length'`: Pad to a maximum length specified with the argument `max_length` or to the
maximum acceptable input length for the model if that argument is not provided.
- `False` or `'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of
different lengths).
max_length (`int`, *optional*):
Maximum length of the returned list and optionally padding length (see above).
pad_to_multiple_of (`int`, *optional*):
If set will pad the sequence to a multiple of the provided value.
This is especially useful to enable the use of Tensor Cores on NVIDIA hardware with compute capability >=
7.5 (Volta).
label_pad_token_id (`int`, *optional*, defaults to -100):
The id to use when padding the labels (-100 will be automatically ignore by PyTorch loss functions).
return_tensors (`str`):
The type of Tensor to return. Allowable values are "np", "pt" and "tf".
"""
tokenizer: PreTrainedTokenizerBase
padding: Union[bool, str, PaddingStrategy] = True
max_length: Optional[int] = None
pad_to_multiple_of: Optional[int] = None
label_pad_token_id: int = -100
return_tensors: str = "pt"
def torch_call(self, features):
import torch
label_name = "label" if "label" in features[0].keys() else "labels"
labels = [feature[label_name] for feature in features] if label_name in features[0].keys() else None
batch = self.tokenizer.pad(
features,
padding=self.padding,
max_length=self.max_length,
pad_to_multiple_of=self.pad_to_multiple_of,
# Conversion to tensors will fail if we have labels as they are not of the same length yet.
return_tensors="pt" if labels is None else None,
)
if labels is None:
return batch
sequence_length = torch.tensor(batch["entity_ids"]).shape[1]
padding_side = self.tokenizer.padding_side
if padding_side == "right":
batch[label_name] = [
list(label) + [self.label_pad_token_id] * (sequence_length - len(label)) for label in labels
]
else:
batch[label_name] = [
[self.label_pad_token_id] * (sequence_length - len(label)) + list(label) for label in labels
]
ner_tags = [feature["ner_tags"] for feature in features]
batch["ner_tags"] = padding_tensor(ner_tags, -1, padding_side, sequence_length)
original_entity_spans = [feature["original_entity_spans"] for feature in features]
batch["original_entity_spans"] = padding_tensor(original_entity_spans, (-1, -1), padding_side, sequence_length)
batch = {k: torch.tensor(v, dtype=torch.int64) for k, v in batch.items()}
return batch
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/luke/run_luke_ner_no_trainer.py
|
#!/usr/bin/env python
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning (m)LUKE model on token classification tasks (NER, POS, CHUNKS) relying on the accelerate library 🤗
without using a Trainer.
"""
import argparse
import logging
import math
import os
import random
from pathlib import Path
import datasets
import torch
from accelerate import Accelerator, DistributedDataParallelKwargs
from datasets import ClassLabel, load_dataset, load_metric
from huggingface_hub import Repository, create_repo
from luke_utils import DataCollatorForLukeTokenClassification, is_punctuation, padding_tensor
from torch.utils.data import DataLoader
from tqdm.auto import tqdm
import transformers
from transformers import (
AdamW,
LukeConfig,
LukeForEntitySpanClassification,
LukeTokenizer,
SchedulerType,
default_data_collator,
get_scheduler,
set_seed,
)
from transformers.utils.versions import require_version
logger = logging.getLogger(__name__)
require_version("datasets>=1.8.0", "To fix: pip install -r examples/pytorch/token-classification/requirements.txt")
def parse_args():
parser = argparse.ArgumentParser(
description="Finetune (m)LUKE on a token classification task (such as NER) with the accelerate library"
)
parser.add_argument(
"--dataset_name",
type=str,
default=None,
help="The name of the dataset to use (via the datasets library).",
)
parser.add_argument(
"--dataset_config_name",
type=str,
default=None,
help="The configuration name of the dataset to use (via the datasets library).",
)
parser.add_argument(
"--train_file", type=str, default=None, help="A csv or a json file containing the training data."
)
parser.add_argument(
"--validation_file", type=str, default=None, help="A csv or a json file containing the validation data."
)
parser.add_argument(
"--text_column_name",
type=str,
default=None,
help="The column name of text to input in the file (a csv or JSON file).",
)
parser.add_argument(
"--label_column_name",
type=str,
default=None,
help="The column name of label to input in the file (a csv or JSON file).",
)
parser.add_argument(
"--max_length",
type=int,
default=128,
help=(
"The maximum total input sequence length after tokenization. Sequences longer than this will be truncated,"
" sequences shorter will be padded if `--pad_to_max_length` is passed."
),
)
parser.add_argument(
"--max_entity_length",
type=int,
default=32,
help=(
"The maximum total input entity length after tokenization (Used only for (M)Luke models). Sequences longer"
" than this will be truncated, sequences shorter will be padded if `--pad_to_max_length` is passed."
),
)
parser.add_argument(
"--max_mention_length",
type=int,
default=30,
help=(
"The maximum total input mention length after tokenization (Used only for (M)Luke models). Sequences"
" longer than this will be truncated, sequences shorter will be padded if `--pad_to_max_length` is passed."
),
)
parser.add_argument(
"--pad_to_max_length",
action="store_true",
help="If passed, pad all samples to `max_length`. Otherwise, dynamic padding is used.",
)
parser.add_argument(
"--model_name_or_path",
type=str,
help="Path to pretrained model or model identifier from huggingface.co/models.",
required=True,
)
parser.add_argument(
"--config_name",
type=str,
default=None,
help="Pretrained config name or path if not the same as model_name",
)
parser.add_argument(
"--tokenizer_name",
type=str,
default=None,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--per_device_train_batch_size",
type=int,
default=8,
help="Batch size (per device) for the training dataloader.",
)
parser.add_argument(
"--per_device_eval_batch_size",
type=int,
default=8,
help="Batch size (per device) for the evaluation dataloader.",
)
parser.add_argument(
"--learning_rate",
type=float,
default=5e-5,
help="Initial learning rate (after the potential warmup period) to use.",
)
parser.add_argument("--weight_decay", type=float, default=0.0, help="Weight decay to use.")
parser.add_argument("--num_train_epochs", type=int, default=3, help="Total number of training epochs to perform.")
parser.add_argument(
"--max_train_steps",
type=int,
default=None,
help="Total number of training steps to perform. If provided, overrides num_train_epochs.",
)
parser.add_argument(
"--gradient_accumulation_steps",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument(
"--lr_scheduler_type",
type=SchedulerType,
default="linear",
help="The scheduler type to use.",
choices=["linear", "cosine", "cosine_with_restarts", "polynomial", "constant", "constant_with_warmup"],
)
parser.add_argument(
"--num_warmup_steps", type=int, default=0, help="Number of steps for the warmup in the lr scheduler."
)
parser.add_argument("--output_dir", type=str, default=None, help="Where to store the final model.")
parser.add_argument("--seed", type=int, default=None, help="A seed for reproducible training.")
parser.add_argument(
"--label_all_tokens",
action="store_true",
help="Setting labels of all special tokens to -100 and thus PyTorch will ignore them.",
)
parser.add_argument(
"--return_entity_level_metrics",
action="store_true",
help="Indication whether entity level metrics are to be returner.",
)
parser.add_argument(
"--task_name",
type=str,
default="ner",
choices=["ner", "pos", "chunk"],
help="The name of the task.",
)
parser.add_argument(
"--debug",
action="store_true",
help="Activate debug mode and run training only with a subset of data.",
)
parser.add_argument("--push_to_hub", action="store_true", help="Whether or not to push the model to the Hub.")
parser.add_argument(
"--hub_model_id", type=str, help="The name of the repository to keep in sync with the local `output_dir`."
)
parser.add_argument("--hub_token", type=str, help="The token to use to push to the Model Hub.")
args = parser.parse_args()
# Sanity checks
if args.task_name is None and args.train_file is None and args.validation_file is None:
raise ValueError("Need either a task name or a training/validation file.")
else:
if args.train_file is not None:
extension = args.train_file.split(".")[-1]
assert extension in ["csv", "json"], "`train_file` should be a csv or a json file."
if args.validation_file is not None:
extension = args.validation_file.split(".")[-1]
assert extension in ["csv", "json"], "`validation_file` should be a csv or a json file."
if args.push_to_hub:
assert args.output_dir is not None, "Need an `output_dir` to create a repo when `--push_to_hub` is passed."
return args
def main():
args = parse_args()
# Initialize the accelerator. We will let the accelerator handle device placement for us in this example.
handler = DistributedDataParallelKwargs(find_unused_parameters=True)
accelerator = Accelerator(kwargs_handlers=[handler])
# Make one log on every process with the configuration for debugging.
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO,
)
logger.info(accelerator.state)
# Setup logging, we only want one process per machine to log things on the screen.
# accelerator.is_local_main_process is only True for one process per machine.
logger.setLevel(logging.INFO if accelerator.is_local_main_process else logging.ERROR)
if accelerator.is_local_main_process:
datasets.utils.logging.set_verbosity_warning()
transformers.utils.logging.set_verbosity_info()
else:
datasets.utils.logging.set_verbosity_error()
transformers.utils.logging.set_verbosity_error()
# If passed along, set the training seed now.
if args.seed is not None:
set_seed(args.seed)
# Handle the repository creation
if accelerator.is_main_process:
if args.push_to_hub:
# Retrieve of infer repo_name
repo_name = args.hub_model_id
if repo_name is None:
repo_name = Path(args.output_dir).absolute().name
# Create repo and retrieve repo_id
repo_id = create_repo(repo_name, exist_ok=True, token=args.hub_token).repo_id
# Clone repo locally
repo = Repository(args.output_dir, clone_from=repo_id, token=args.hub_token)
elif args.output_dir is not None:
os.makedirs(args.output_dir, exist_ok=True)
accelerator.wait_for_everyone()
# Get the datasets: you can either provide your own CSV/JSON/TXT training and evaluation files (see below)
# or just provide the name of one of the public datasets for token classification task available on the hub at https://huggingface.co/datasets/
# (the dataset will be downloaded automatically from the datasets Hub).
#
# For CSV/JSON files, this script will use the column called 'tokens' or the first column if no column called
# 'tokens' is found. You can easily tweak this behavior (see below).
#
# In distributed training, the load_dataset function guarantee that only one local process can concurrently
# download the dataset.
if args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
raw_datasets = load_dataset(args.dataset_name, args.dataset_config_name)
else:
data_files = {}
if args.train_file is not None:
data_files["train"] = args.train_file
if args.validation_file is not None:
data_files["validation"] = args.validation_file
extension = args.train_file.split(".")[-1]
raw_datasets = load_dataset(extension, data_files=data_files)
# Trim a number of training examples
if args.debug:
for split in raw_datasets.keys():
raw_datasets[split] = raw_datasets[split].select(range(100))
# See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
# https://huggingface.co/docs/datasets/loading_datasets.
if raw_datasets["train"] is not None:
column_names = raw_datasets["train"].column_names
features = raw_datasets["train"].features
else:
column_names = raw_datasets["validation"].column_names
features = raw_datasets["validation"].features
if args.text_column_name is not None:
text_column_name = args.text_column_name
elif "tokens" in column_names:
text_column_name = "tokens"
else:
text_column_name = column_names[0]
if args.label_column_name is not None:
label_column_name = args.label_column_name
elif f"{args.task_name}_tags" in column_names:
label_column_name = f"{args.task_name}_tags"
else:
label_column_name = column_names[1]
# In the event the labels are not a `Sequence[ClassLabel]`, we will need to go through the dataset to get the
# unique labels.
def get_label_list(labels):
unique_labels = set()
for label in labels:
unique_labels = unique_labels | set(label)
label_list = list(unique_labels)
label_list.sort()
return label_list
if isinstance(features[label_column_name].feature, ClassLabel):
label_list = features[label_column_name].feature.names
# No need to convert the labels since they are already ints.
else:
label_list = get_label_list(raw_datasets["train"][label_column_name])
num_labels = len(label_list)
# Map that sends B-Xxx label to its I-Xxx counterpart
b_to_i_label = []
for idx, label in enumerate(label_list):
if label.startswith("B-") and label.replace("B-", "I-") in label_list:
b_to_i_label.append(label_list.index(label.replace("B-", "I-")))
else:
b_to_i_label.append(idx)
# Load pretrained model and tokenizer
#
# In distributed training, the .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
if args.config_name:
config = LukeConfig.from_pretrained(args.config_name, num_labels=num_labels)
elif args.model_name_or_path:
config = LukeConfig.from_pretrained(args.model_name_or_path, num_labels=num_labels)
else:
logger.warning("You are instantiating a new config instance from scratch.")
tokenizer_name_or_path = args.tokenizer_name if args.tokenizer_name else args.model_name_or_path
if not tokenizer_name_or_path:
raise ValueError(
"You are instantiating a new tokenizer from scratch. This is not supported by this script. "
"You can do it from another script, save it, and load it from here, using --tokenizer_name."
)
tokenizer = LukeTokenizer.from_pretrained(
tokenizer_name_or_path,
use_fast=False,
task="entity_span_classification",
max_entity_length=args.max_entity_length,
max_mention_length=args.max_mention_length,
)
if args.model_name_or_path:
model = LukeForEntitySpanClassification.from_pretrained(
args.model_name_or_path,
from_tf=bool(".ckpt" in args.model_name_or_path),
config=config,
)
else:
logger.info("Training new model from scratch")
model = LukeForEntitySpanClassification.from_config(config)
model.resize_token_embeddings(len(tokenizer))
# Preprocessing the datasets.
# First we tokenize all the texts.
padding = "max_length" if args.pad_to_max_length else False
def compute_sentence_boundaries_for_luke(examples):
sentence_boundaries = []
for tokens in examples[text_column_name]:
sentence_boundaries.append([0, len(tokens)])
examples["sentence_boundaries"] = sentence_boundaries
return examples
def compute_entity_spans_for_luke(examples):
all_entity_spans = []
texts = []
all_labels_entity_spans = []
all_original_entity_spans = []
for labels, tokens, sentence_boundaries in zip(
examples[label_column_name], examples[text_column_name], examples["sentence_boundaries"]
):
subword_lengths = [len(tokenizer.tokenize(token)) for token in tokens]
total_subword_length = sum(subword_lengths)
_, context_end = sentence_boundaries
if total_subword_length > args.max_length - 2:
cur_length = sum(subword_lengths[:context_end])
idx = context_end - 1
while cur_length > args.max_length - 2:
cur_length -= subword_lengths[idx]
context_end -= 1
idx -= 1
text = ""
sentence_words = tokens[:context_end]
sentence_subword_lengths = subword_lengths[:context_end]
word_start_char_positions = []
word_end_char_positions = []
labels_positions = {}
for word, label in zip(sentence_words, labels):
if word[0] == "'" or (len(word) == 1 and is_punctuation(word)):
text = text.rstrip()
word_start_char_positions.append(len(text))
text += word
word_end_char_positions.append(len(text))
text += " "
labels_positions[(word_start_char_positions[-1], word_end_char_positions[-1])] = label
text = text.rstrip()
texts.append(text)
entity_spans = []
labels_entity_spans = []
original_entity_spans = []
for word_start in range(len(sentence_words)):
for word_end in range(word_start, len(sentence_words)):
if (
sum(sentence_subword_lengths[word_start:word_end]) <= tokenizer.max_mention_length
and len(entity_spans) < tokenizer.max_entity_length
):
entity_spans.append((word_start_char_positions[word_start], word_end_char_positions[word_end]))
original_entity_spans.append((word_start, word_end + 1))
if (
word_start_char_positions[word_start],
word_end_char_positions[word_end],
) in labels_positions:
labels_entity_spans.append(
labels_positions[
(word_start_char_positions[word_start], word_end_char_positions[word_end])
]
)
else:
labels_entity_spans.append(0)
all_entity_spans.append(entity_spans)
all_labels_entity_spans.append(labels_entity_spans)
all_original_entity_spans.append(original_entity_spans)
examples["entity_spans"] = all_entity_spans
examples["text"] = texts
examples["labels_entity_spans"] = all_labels_entity_spans
examples["original_entity_spans"] = all_original_entity_spans
return examples
def tokenize_and_align_labels(examples):
entity_spans = []
for v in examples["entity_spans"]:
entity_spans.append(list(map(tuple, v)))
tokenized_inputs = tokenizer(
examples["text"],
entity_spans=entity_spans,
max_length=args.max_length,
padding=padding,
truncation=True,
)
if padding == "max_length":
tokenized_inputs["labels"] = padding_tensor(
examples["labels_entity_spans"], -100, tokenizer.padding_side, tokenizer.max_entity_length
)
tokenized_inputs["original_entity_spans"] = padding_tensor(
examples["original_entity_spans"], (-1, -1), tokenizer.padding_side, tokenizer.max_entity_length
)
tokenized_inputs[label_column_name] = padding_tensor(
examples[label_column_name], -1, tokenizer.padding_side, tokenizer.max_entity_length
)
else:
tokenized_inputs["labels"] = [ex[: tokenizer.max_entity_length] for ex in examples["labels_entity_spans"]]
tokenized_inputs["original_entity_spans"] = [
ex[: tokenizer.max_entity_length] for ex in examples["original_entity_spans"]
]
tokenized_inputs[label_column_name] = [
ex[: tokenizer.max_entity_length] for ex in examples[label_column_name]
]
return tokenized_inputs
with accelerator.main_process_first():
raw_datasets = raw_datasets.map(
compute_sentence_boundaries_for_luke,
batched=True,
desc="Adding sentence boundaries",
)
raw_datasets = raw_datasets.map(
compute_entity_spans_for_luke,
batched=True,
desc="Adding sentence spans",
)
processed_raw_datasets = raw_datasets.map(
tokenize_and_align_labels,
batched=True,
remove_columns=raw_datasets["train"].column_names,
desc="Running tokenizer on dataset",
)
train_dataset = processed_raw_datasets["train"]
eval_dataset = processed_raw_datasets["validation"]
# Log a few random samples from the training set:
for index in random.sample(range(len(train_dataset)), 3):
logger.info(f"Sample {index} of the training set: {train_dataset[index]}.")
# DataLoaders creation:
if args.pad_to_max_length:
# If padding was already done ot max length, we use the default data collator that will just convert everything
# to tensors.
data_collator = default_data_collator
else:
# Otherwise, `DataCollatorForTokenClassification` will apply dynamic padding for us (by padding to the maximum length of
# the samples passed). When using mixed precision, we add `pad_to_multiple_of=8` to pad all tensors to multiple
# of 8s, which will enable the use of Tensor Cores on NVIDIA hardware with compute capability >= 7.5 (Volta).
data_collator = DataCollatorForLukeTokenClassification(
tokenizer, pad_to_multiple_of=(8 if accelerator.use_fp16 else None)
)
train_dataloader = DataLoader(
train_dataset, shuffle=True, collate_fn=data_collator, batch_size=args.per_device_train_batch_size
)
eval_dataloader = DataLoader(eval_dataset, collate_fn=data_collator, batch_size=args.per_device_eval_batch_size)
# Optimizer
# Split weights in two groups, one with weight decay and the other not.
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if not any(nd in n for nd in no_decay)],
"weight_decay": args.weight_decay,
},
{
"params": [p for n, p in model.named_parameters() if any(nd in n for nd in no_decay)],
"weight_decay": 0.0,
},
]
optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate)
# Use the device given by the `accelerator` object.
device = accelerator.device
model.to(device)
# Prepare everything with our `accelerator`.
model, optimizer, train_dataloader, eval_dataloader = accelerator.prepare(
model, optimizer, train_dataloader, eval_dataloader
)
# Note -> the training dataloader needs to be prepared before we grab his length below (cause its length will be
# shorter in multiprocess)
# Scheduler and math around the number of training steps.
num_update_steps_per_epoch = math.ceil(len(train_dataloader) / args.gradient_accumulation_steps)
if args.max_train_steps is None:
args.max_train_steps = args.num_train_epochs * num_update_steps_per_epoch
else:
args.num_train_epochs = math.ceil(args.max_train_steps / num_update_steps_per_epoch)
lr_scheduler = get_scheduler(
name=args.lr_scheduler_type,
optimizer=optimizer,
num_warmup_steps=args.num_warmup_steps,
num_training_steps=args.max_train_steps,
)
# Metrics
metric = load_metric("seqeval")
def get_luke_labels(outputs, ner_tags, original_entity_spans):
true_predictions = []
true_labels = []
for output, original_spans, tags in zip(outputs.logits, original_entity_spans, ner_tags):
true_tags = [val for val in tags if val != -1]
true_original_spans = [val for val in original_spans if val != (-1, -1)]
max_indices = torch.argmax(output, axis=1)
max_logits = torch.max(output, axis=1).values
predictions = []
for logit, index, span in zip(max_logits, max_indices, true_original_spans):
if index != 0:
predictions.append((logit, span, label_list[index]))
predicted_sequence = [label_list[0]] * len(true_tags)
for _, span, label in sorted(predictions, key=lambda o: o[0], reverse=True):
if all(o == label_list[0] for o in predicted_sequence[span[0] : span[1]]):
predicted_sequence[span[0]] = label
if span[1] - span[0] > 1:
predicted_sequence[span[0] + 1 : span[1]] = [label] * (span[1] - span[0] - 1)
true_predictions.append(predicted_sequence)
true_labels.append([label_list[tag_id] for tag_id in true_tags])
return true_predictions, true_labels
def compute_metrics():
results = metric.compute()
if args.return_entity_level_metrics:
# Unpack nested dictionaries
final_results = {}
for key, value in results.items():
if isinstance(value, dict):
for n, v in value.items():
final_results[f"{key}_{n}"] = v
else:
final_results[key] = value
return final_results
else:
return {
"precision": results["overall_precision"],
"recall": results["overall_recall"],
"f1": results["overall_f1"],
"accuracy": results["overall_accuracy"],
}
# Train!
total_batch_size = args.per_device_train_batch_size * accelerator.num_processes * args.gradient_accumulation_steps
logger.info("***** Running training *****")
logger.info(f" Num examples = {len(train_dataset)}")
logger.info(f" Num Epochs = {args.num_train_epochs}")
logger.info(f" Instantaneous batch size per device = {args.per_device_train_batch_size}")
logger.info(f" Total train batch size (w. parallel, distributed & accumulation) = {total_batch_size}")
logger.info(f" Gradient Accumulation steps = {args.gradient_accumulation_steps}")
logger.info(f" Total optimization steps = {args.max_train_steps}")
# Only show the progress bar once on each machine.
progress_bar = tqdm(range(args.max_train_steps), disable=not accelerator.is_local_main_process)
completed_steps = 0
for epoch in range(args.num_train_epochs):
model.train()
for step, batch in enumerate(train_dataloader):
_ = batch.pop("original_entity_spans")
outputs = model(**batch)
loss = outputs.loss
loss = loss / args.gradient_accumulation_steps
accelerator.backward(loss)
if step % args.gradient_accumulation_steps == 0 or step == len(train_dataloader) - 1:
optimizer.step()
lr_scheduler.step()
optimizer.zero_grad()
progress_bar.update(1)
completed_steps += 1
if completed_steps >= args.max_train_steps:
break
model.eval()
for step, batch in enumerate(eval_dataloader):
original_entity_spans = batch.pop("original_entity_spans")
with torch.no_grad():
outputs = model(**batch)
preds, refs = get_luke_labels(outputs, batch[label_column_name], original_entity_spans)
metric.add_batch(
predictions=preds,
references=refs,
) # predictions and preferences are expected to be a nested list of labels, not label_ids
eval_metric = compute_metrics()
accelerator.print(f"epoch {epoch}:", eval_metric)
if args.push_to_hub and epoch < args.num_train_epochs - 1:
accelerator.wait_for_everyone()
unwrapped_model = accelerator.unwrap_model(model)
unwrapped_model.save_pretrained(args.output_dir, save_function=accelerator.save)
if accelerator.is_main_process:
tokenizer.save_pretrained(args.output_dir)
repo.push_to_hub(
commit_message=f"Training in progress epoch {epoch}", blocking=False, auto_lfs_prune=True
)
if args.output_dir is not None:
accelerator.wait_for_everyone()
unwrapped_model = accelerator.unwrap_model(model)
unwrapped_model.save_pretrained(args.output_dir, save_function=accelerator.save)
if accelerator.is_main_process:
tokenizer.save_pretrained(args.output_dir)
if args.push_to_hub:
repo.push_to_hub(commit_message="End of training", auto_lfs_prune=True)
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects/onnx
|
hf_public_repos/transformers/examples/research_projects/onnx/summarization/README.md
|
<!---
Copyright 2021 The HuggingFace Team. All rights reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
-->
# Bart + Beam Search to ONNX
Author: [@fatcat-z](https://github.com/fatcat-z)
This folder contains an example of exporting Bart + Beam Search generation (`BartForConditionalGeneration`) to ONNX.
Beam Search contains a for-loop workflow, so we need to make them TorchScript-compatible for exporting to ONNX. This example shows how to make a Bart model be TorchScript-compatible by wrapping up it into a new model. In addition, some changes were made to the `beam_search()` function to make it TorchScript-compatible.
## How to run the example
To make sure you can successfully run the latest versions of the example scripts, you have to **install the library from source** and install some example-specific requirements. To do this, execute the following steps in a new virtual environment:
```bash
git clone https://github.com/huggingface/transformers
cd transformers
pip install '.[onnxruntime]'
```
Then cd in this example folder and run
```bash
pip install -r requirements.txt
```
Now you can run the example command below to get the example ONNX file:
```bash
python run_onnx_exporter.py --model_name_or_path facebook/bart-base
```
| 0 |
hf_public_repos/transformers/examples/research_projects/onnx
|
hf_public_repos/transformers/examples/research_projects/onnx/summarization/requirements.txt
|
torch >= 1.10
| 0 |
hf_public_repos/transformers/examples/research_projects/onnx
|
hf_public_repos/transformers/examples/research_projects/onnx/summarization/run_onnx_exporter.py
|
#!/usr/bin/env python
# coding=utf-8
# Copyright The HuggingFace Team and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
"""
import argparse
import logging
import os
import sys
import numpy as np
import onnxruntime
import torch
from bart_onnx.generation_onnx import BARTBeamSearchGenerator
from bart_onnx.reduce_onnx_size import remove_dup_initializers
import transformers
from transformers import BartForConditionalGeneration, BartTokenizer
logging.basicConfig(
format="%(asctime)s | %(levelname)s | %(name)s | [%(filename)s:%(lineno)d] %(message)s",
datefmt="%Y-%m-%d %H:%M:%S",
level=os.environ.get("LOGLEVEL", "INFO").upper(),
stream=sys.stdout,
)
logger = logging.getLogger(__name__)
model_dict = {"facebook/bart-base": BartForConditionalGeneration}
tokenizer_dict = {"facebook/bart-base": BartTokenizer}
def parse_args():
parser = argparse.ArgumentParser(description="Export Bart model + Beam Search to ONNX graph.")
parser.add_argument(
"--validation_file", type=str, default=None, help="A csv or a json file containing the validation data."
)
parser.add_argument(
"--max_length",
type=int,
default=5,
help="The maximum total input sequence length after tokenization.",
)
parser.add_argument(
"--num_beams",
type=int,
default=None,
help=(
"Number of beams to use for evaluation. This argument will be "
"passed to ``model.generate``, which is used during ``evaluate`` and ``predict``."
),
)
parser.add_argument(
"--model_name_or_path",
type=str,
help="Path to pretrained model or model identifier from huggingface.co/models.",
required=True,
)
parser.add_argument(
"--config_name",
type=str,
default=None,
help="Pretrained config name or path if not the same as model_name",
)
parser.add_argument(
"--device",
type=str,
default="cpu",
help="Device where the model will be run",
)
parser.add_argument("--output_file_path", type=str, default=None, help="Where to store the final ONNX file.")
args = parser.parse_args()
return args
def load_model_tokenizer(model_name, device="cpu"):
huggingface_model = model_dict[model_name].from_pretrained(model_name).to(device)
tokenizer = tokenizer_dict[model_name].from_pretrained(model_name)
if model_name in ["facebook/bart-base"]:
huggingface_model.config.no_repeat_ngram_size = 0
huggingface_model.config.forced_bos_token_id = None
huggingface_model.config.min_length = 0
return huggingface_model, tokenizer
def export_and_validate_model(model, tokenizer, onnx_file_path, num_beams, max_length):
model.eval()
ort_sess = None
bart_script_model = torch.jit.script(BARTBeamSearchGenerator(model))
with torch.no_grad():
ARTICLE_TO_SUMMARIZE = "My friends are cool but they eat too many carbs."
inputs = tokenizer([ARTICLE_TO_SUMMARIZE], max_length=1024, return_tensors="pt").to(model.device)
summary_ids = model.generate(
inputs["input_ids"],
attention_mask=inputs["attention_mask"],
num_beams=num_beams,
max_length=max_length,
early_stopping=True,
decoder_start_token_id=model.config.decoder_start_token_id,
)
torch.onnx.export(
bart_script_model,
(
inputs["input_ids"],
inputs["attention_mask"],
num_beams,
max_length,
model.config.decoder_start_token_id,
),
onnx_file_path,
opset_version=14,
input_names=["input_ids", "attention_mask", "num_beams", "max_length", "decoder_start_token_id"],
output_names=["output_ids"],
dynamic_axes={
"input_ids": {0: "batch", 1: "seq"},
"output_ids": {0: "batch", 1: "seq_out"},
},
example_outputs=summary_ids,
)
logger.info("Model exported to {}".format(onnx_file_path))
new_onnx_file_path = remove_dup_initializers(os.path.abspath(onnx_file_path))
logger.info("Deduplicated and optimized model written to {}".format(new_onnx_file_path))
ort_sess = onnxruntime.InferenceSession(new_onnx_file_path)
ort_out = ort_sess.run(
None,
{
"input_ids": inputs["input_ids"].cpu().numpy(),
"attention_mask": inputs["attention_mask"].cpu().numpy(),
"num_beams": np.array(num_beams),
"max_length": np.array(max_length),
"decoder_start_token_id": np.array(model.config.decoder_start_token_id),
},
)
np.testing.assert_allclose(summary_ids.cpu().numpy(), ort_out[0], rtol=1e-3, atol=1e-3)
logger.info("Model outputs from torch and ONNX Runtime are similar.")
logger.info("Success.")
def main():
args = parse_args()
max_length = 5
num_beams = 4
# Make one log on every process with the configuration for debugging.
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO,
)
logger.setLevel(logging.INFO)
transformers.utils.logging.set_verbosity_error()
device = torch.device(args.device)
model, tokenizer = load_model_tokenizer(args.model_name_or_path, device)
if model.config.decoder_start_token_id is None:
raise ValueError("Make sure that `config.decoder_start_token_id` is correctly defined")
model.to(device)
if args.max_length:
max_length = args.max_length
if args.num_beams:
num_beams = args.num_beams
if args.output_file_path:
output_name = args.output_file_path
else:
output_name = "BART.onnx"
logger.info("Exporting model to ONNX")
export_and_validate_model(model, tokenizer, output_name, num_beams, max_length)
if __name__ == "__main__":
main()
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hf_public_repos/transformers/examples/research_projects/onnx/summarization
|
hf_public_repos/transformers/examples/research_projects/onnx/summarization/bart_onnx/reduce_onnx_size.py
|
"""
Code to remove duplicate initializers to reduce ONNX model size.
"""
import os
import numpy
import onnx
def _is_equal_tensor_proto(a, b):
name_a = a.name
name_b = b.name
a.name = ""
b.name = ""
res = a == b
a.name = name_a
b.name = name_b
return res
def _node_replace_input_with(node_proto, name, new_name):
for i, input_name in enumerate(node_proto.input):
if input_name == name:
node_proto.input.insert(i, new_name)
node_proto.input.pop(i + 1)
if node_proto.op_type == "If":
_graph_replace_input_with(node_proto.attribute[0].g, name, new_name)
_graph_replace_input_with(node_proto.attribute[1].g, name, new_name)
if node_proto.op_type == "Loop":
_graph_replace_input_with(node_proto.attribute[0].g, name, new_name)
def _graph_replace_input_with(graph_proto, name, new_name):
for n in graph_proto.node:
_node_replace_input_with(n, name, new_name)
def _remove_dup_initializers_from_model(model, model_without_ext, ind_to_replace):
inits_with_data = list(model.graph.initializer)
inits = list(model_without_ext.graph.initializer)
for i, ref_i in ind_to_replace:
assert inits_with_data[i].name == inits[i].name
assert inits_with_data[ref_i].name == inits[ref_i].name
assert i > ref_i
name_i = inits[i].name
name_ref = inits[ref_i].name
model_without_ext.graph.initializer.remove(inits[i])
# for n in model.graph.node:
_graph_replace_input_with(model_without_ext.graph, name_i, name_ref)
def remove_dup_initializers(onnx_file_path):
"""
Removes duplicate initializers from the model to reduce its size.
Writes a new file in the same directory as onnx_file_path and returns the path to that file.
"""
model_file_folder = os.path.dirname(onnx_file_path)
model_file_name = os.path.basename(onnx_file_path)
model = onnx.load(os.path.join(model_file_folder, model_file_name))
inits = list(model.graph.initializer)
dup_set = set()
dup_map = {}
ind_to_replace = []
total_reduced_size = 0
for i in range(len(inits)):
if i in dup_set:
continue
for j in range(i + 1, len(inits)):
if j in dup_set:
continue
if _is_equal_tensor_proto(inits[i], inits[j]):
dup_set.add(i)
dup_set.add(j)
dtype = inits[j].data_type
mem_size = numpy.prod(inits[j].dims)
if dtype == 1:
mem_size *= 4
elif dtype == 6:
mem_size *= 4
elif dtype == 7 or dtype == 11:
mem_size *= 8
else:
print("unexpected data type: ", dtype)
total_reduced_size += mem_size
name_i = inits[i].name
name_j = inits[j].name
if name_i in dup_map:
dup_map[name_i].append(name_j)
else:
dup_map[name_i] = [name_j]
ind_to_replace.append((j, i))
print("total reduced size: ", total_reduced_size / 1024 / 1024 / 1024, "GB")
ind_to_replace = sorted(ind_to_replace)
_remove_dup_initializers_from_model(model, model, ind_to_replace)
optimized_model_file_name = "optimized_" + model_file_name
new_model = os.path.join(model_file_folder, optimized_model_file_name)
onnx.save(model, new_model)
return new_model
| 0 |
hf_public_repos/transformers/examples/research_projects/onnx/summarization
|
hf_public_repos/transformers/examples/research_projects/onnx/summarization/bart_onnx/generation_onnx.py
|
import copy
import itertools
from typing import List, Optional, Tuple
import torch
import torch.nn.functional as F
from transformers import BartConfig
from transformers.generation import GenerationMixin
def _convert_past_list_to_tuple(past_key_values):
"""
In Bart model, the type of past_key_values is tuple(tuple(torch.FloatTensor)) which is not
TorchScript-compatible. To support this, we have to convert it during the export process.
This function will convert past values from a list to tuple(tuple(torch.FloatTensor)) for
the inner decoder.
According to the definition of past_key_values, each inner tuple(torch.FloatTensor) has 4 tensors,
so we convert every 4 elements in the list as a tuple(torch.FloatTensor).
"""
count_of_each_inner_tuple = 4
results = ()
temp_result = ()
count_n = len(past_key_values) // count_of_each_inner_tuple
for idx in range(count_n):
real_idx = idx * count_of_each_inner_tuple
temp_result = tuple(past_key_values[real_idx : real_idx + count_of_each_inner_tuple])
results += ((temp_result),)
return results
class EncoderForONNX(torch.nn.Module):
def __init__(self, encoder):
super().__init__()
self.encoder = encoder
def forward(self, input_ids, attention_mask):
return self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
return_dict=False,
)
class DecoderForONNX(torch.nn.Module):
def __init__(self, decoder):
super().__init__()
self.decoder = decoder
def forward(self, input_ids, encoder_state, attention_mask, past=None):
all_results = None
if past is not None:
all_results = _convert_past_list_to_tuple(past)
input_ids = input_ids[:, -1:]
last_hidden_state, past_key_values = self.decoder(
input_ids=input_ids,
encoder_hidden_states=encoder_state,
encoder_attention_mask=attention_mask,
past_key_values=all_results,
return_dict=False,
)
past_values = []
for past in past_key_values:
past_values = past_values + list(past)
return last_hidden_state, past_values
def _create_traced_encoder(encoder, input_ids, attention_mask):
encoder_c = copy.deepcopy(encoder)
encoder_for_onnx = EncoderForONNX(encoder_c)
return torch.jit.trace(encoder_for_onnx, (input_ids, attention_mask))
def _create_traced_decoder(decoder, input_ids, encoder_state, attention_mask, past=None):
decoder_c = copy.deepcopy(decoder)
decoder_for_onnx = DecoderForONNX(decoder_c)
past_values = list(itertools.chain.from_iterable(past or ()))
# Do this twice so we got 2 different decoders for further work.
if past_values:
return torch.jit.trace(decoder_for_onnx, (input_ids, encoder_state, attention_mask, past_values))
else:
return torch.jit.trace(decoder_for_onnx, (input_ids, encoder_state, attention_mask))
class BartConfigTS(BartConfig, torch.nn.Module):
"""
BartConfigTS is a TorchScript-compatible transformers.models.bart.configuration_bart.BartConfig.
TorchScript only supports sub-classes of torch.nn.Module.
"""
def __init__(self, config):
BartConfig.__init__(self, config)
torch.nn.Module.__init__(self)
class MinLengthLogitsProcessorTS(torch.nn.Module):
r"""
:class:`transformers.LogitsProcessor` enforcing a min-length by setting EOS probability to 0.
Args:
min_length (:obj:`int`):
The minimum length below which the score of :obj:`eos_token_id` is set to :obj:`-float("Inf")`.
eos_token_id (:obj:`int`):
The id of the `end-of-sequence` token.
"""
def __init__(self, min_length: int, eos_token_id: int):
super().__init__()
if not isinstance(min_length, int) or min_length < 0:
raise ValueError(f"`min_length` has to be a positive integer, but is {min_length}")
if not isinstance(eos_token_id, int) or eos_token_id < 0:
raise ValueError(f"`eos_token_id` has to be a positive integer, but is {eos_token_id}")
self.min_length = min_length
self.eos_token_id = eos_token_id
def forward(self, input_ids, scores) -> torch.Tensor:
cur_len = input_ids.shape[-1]
if cur_len < self.min_length:
scores[:, self.eos_token_id] = -float("inf")
return scores
class BARTGenerator(torch.nn.Module, GenerationMixin):
def __init__(self, model):
super().__init__()
self.config = BartConfigTS(model.config)
self.config.force_bos_token_to_be_generated = False
self._trace_modules(model)
self.logits_processor = MinLengthLogitsProcessorTS(self.config.min_length, self.config.eos_token_id)
self.final_logits_weight = model.model.shared.weight
self.final_logits_bias = model.final_logits_bias
self.decoder_layers = model.config.decoder_layers
def _trace_modules(self, model):
input_ids = torch.tensor(
[
[
19,
669,
18,
420,
8,
664,
57,
42,
8,
664,
21,
3028,
195,
4445,
331,
1293,
34,
21,
10,
6174,
1100,
6,
69,
104,
42,
32,
2621,
1638,
144,
4,
6174,
558,
108,
4419,
1091,
28,
4,
1668,
9,
1509,
1621,
279,
35,
867,
2734,
85,
11,
2216,
2734,
85,
203,
2244,
7,
6,
15,
8102,
7,
57,
8629,
5,
model.config.eos_token_id,
]
],
device=model.device,
dtype=torch.long,
)
attention_mask = torch.tensor(
[[True] * input_ids.shape[-1]],
device=model.device,
dtype=torch.bool,
)
self.encoder = _create_traced_encoder(model.get_encoder(), input_ids, attention_mask)
encoder_outputs = model.get_encoder()(input_ids, attention_mask=attention_mask, return_dict=True)
decoder = model.model.decoder
decoder_outputs = decoder(input_ids, attention_mask, encoder_outputs["last_hidden_state"], None, None, None)
self.decoder_no_past = _create_traced_decoder(
model.model.decoder, input_ids, encoder_outputs["last_hidden_state"], attention_mask
)
self.decoder_with_past = _create_traced_decoder(
model.model.decoder, input_ids, encoder_outputs["last_hidden_state"], attention_mask, decoder_outputs[1]
)
def _encoder_forward(self, input_ids, attention_mask):
return self.encoder(input_ids, attention_mask)[0]
@staticmethod
def _init_sequence_length_for_generation(
input_ids: torch.LongTensor, max_length: int
) -> Tuple[torch.Tensor, torch.Tensor, int]:
unfinished_sequences = torch.zeros(input_ids.shape[0], dtype=torch.long, device=input_ids.device) + 1
sequence_lengths = torch.zeros(input_ids.shape[0], dtype=torch.long, device=input_ids.device) + max_length
cur_len = input_ids.shape[-1]
return sequence_lengths, unfinished_sequences, cur_len
def _decoder_forward(self, input_ids, encoder_output, attention_mask, past: List[torch.Tensor]):
# Update here to use different decoder for different values of past.
if past is None or len(past) == 0:
decoder_output, past = self.decoder_no_past(
input_ids=input_ids, encoder_state=encoder_output, attention_mask=attention_mask
)
else:
decoder_output, past = self.decoder_with_past(
input_ids=input_ids, encoder_state=encoder_output, attention_mask=attention_mask, past=past
)
lm_logits = F.linear(decoder_output, self.final_logits_weight, bias=self.final_logits_bias)
return lm_logits, past
def greedy_search(
self, input_ids, encoder_output, attention_mask, max_length, pad_token_id: int, eos_token_id: int
):
# init sequence length tensors
sequence_lengths, unfinished_sequences, cur_len = self._init_sequence_length_for_generation(
input_ids, max_length
)
past: List[torch.Tensor] = []
while cur_len < max_length:
logits, past = self._decoder_forward(input_ids, encoder_output, attention_mask, past)
next_token_logits = logits[:, -1, :]
# pre-process distribution
scores = self.logits_processor(input_ids, next_token_logits)
# argmax
next_tokens = torch.argmax(scores, dim=-1)
# add code that transfomers next_tokens to tokens_to_add
if eos_token_id is not None:
assert pad_token_id is not None, "If eos_token_id is defined, make sure that pad_token_id is defined."
next_tokens = next_tokens * unfinished_sequences + (pad_token_id) * (1 - unfinished_sequences)
# add token and increase length by one
input_ids = torch.cat([input_ids, next_tokens[:, None]], dim=-1)
# update sequence length
if eos_token_id is not None:
sequence_lengths, unfinished_sequences = self._update_seq_length_for_generation(
sequence_lengths, unfinished_sequences, cur_len, next_tokens == eos_token_id
)
# stop when there is a </s> in each sentence, or if we exceed the maximul length
if unfinished_sequences.max() == 0:
break
# increase cur_len
cur_len = cur_len + 1
return input_ids
def _prepare_decoder_input_ids_for_generation(
self,
input_ids: torch.LongTensor,
decoder_start_token_id,
bos_token_id: Optional[int] = None,
) -> torch.LongTensor:
decoder_input_ids = (
torch.ones((input_ids.shape[0], 1), dtype=input_ids.dtype, device=input_ids.device)
* decoder_start_token_id
)
return decoder_input_ids
def forward(self, input_ids, attention_mask, max_length, decoder_start_token_id):
pad_token_id = self.config.pad_token_id
bos_token_id = self.config.bos_token_id
eos_token_id = self.config.eos_token_id
# special case if pad_token_id is not defined
if pad_token_id is None and eos_token_id is not None:
# Setting `pad_token_id` to `eos_token_id`:{eos_token_id} for open-end generation.
pad_token_id = eos_token_id
encoder_output = self._encoder_forward(input_ids, attention_mask)
input_ids = self._prepare_decoder_input_ids_for_generation(
input_ids,
decoder_start_token_id=decoder_start_token_id,
bos_token_id=bos_token_id,
)
return self.greedy_search(
input_ids,
encoder_output,
attention_mask,
max_length=max_length,
pad_token_id=pad_token_id,
eos_token_id=eos_token_id,
)
# TorchScript compatible BeamSearchScorer
class BeamSearchScorerTS(torch.nn.Module):
def __init__(self):
super().__init__()
self.max_length: int = 200
self.num_beams: int = 3
self.batch_size: int = 1
self.length_penalty: float = 1.0
self.do_early_stopping: bool = True
self.num_beam_hyps_to_keep: int = 1
self.num_beam_groups: int = 1
self.group_size: int = self.num_beams // self.num_beam_groups
self._done = torch.zeros(self.batch_size, dtype=torch.bool)
self._beam_hyps_count = torch.zeros(self.batch_size, dtype=torch.long)
self._beam_hyps_worst_scores = torch.zeros(self.batch_size) + 1e9
self._beam_hyps_max_length: int = self.max_length - 1
self._beam_hyps: List[torch.Tensor] = [torch.zeros(2)] # placeholder for TorchScript compatibility
self._beam_scores: List[torch.Tensor] = [torch.zeros(2)] # placeholder for TorchScript compatibility
def is_done(self) -> torch.Tensor:
return self._done.all()
def init(
self,
batch_size: int,
max_length: int,
num_beams: int,
device: torch.device,
length_penalty: float = 1.0,
do_early_stopping: bool = False,
num_beam_hyps_to_keep: int = 1,
num_beam_groups: int = 1,
):
self.max_length = max_length
self.num_beams = num_beams
self.batch_size = batch_size
self.length_penalty = length_penalty
self.do_early_stopping = do_early_stopping
self.num_beam_hyps_to_keep = num_beam_hyps_to_keep
self.num_beam_groups = num_beam_groups
self.group_size = self.num_beams // self.num_beam_groups
# NOTE: TorchScript does not support List of Modules
# Rewritten BeamHypotheses with tensors and list of tensors.
self._done = torch.zeros(batch_size, dtype=torch.bool, device=device)
self._beam_hyps_count = torch.zeros(batch_size, dtype=torch.long, device=device)
self._beam_hyps_worst_scores = torch.zeros(batch_size, device=device) + 1e9
self._beam_hyps = []
self._beam_scores = []
self._beam_hyps_max_length = max_length - 1 # ignoring bos_token
if not isinstance(num_beams, int) or num_beams <= 1:
raise ValueError(
f"`num_beams` has to be an integer strictly greater than 1, but is {num_beams}. For `num_beams` == 1,"
" one should make use of `greedy_search` instead."
)
if not isinstance(num_beam_groups, int) or (num_beam_groups > num_beams) or (num_beams % num_beam_groups != 0):
raise ValueError(
"`num_beam_groups` has to be an integer smaller or equal than `num_beams` and `num_beams` has to be"
f" divisible by `num_beam_groups`, but is {num_beam_groups} with `num_beams` being {num_beams}."
)
def hypo_len(self, hypo_idx: int):
"""
Number of hypotheses in the list.
"""
return self._beam_hyps_count[hypo_idx]
def hypo_add(self, hyp: torch.Tensor, sum_logprobs: float, hypo_idx: int):
"""
Add a new hypothesis to the list.
"""
score = sum_logprobs / (hyp.shape[-1] ** self.length_penalty)
hyps_count = self.hypo_len(hypo_idx)
if hyps_count < self.num_beams or score > self._beam_hyps_worst_scores[hypo_idx]:
# NOTE: work around difference of torch.sum(empty_tensor) == 0, while error in onnx.
# Bug: https://msdata.visualstudio.com/Vienna/_workitems/edit/1486599
beam_idx = (
torch.sum(self._beam_hyps_count[:hypo_idx]) if hypo_idx != 0 else torch.tensor(0, dtype=torch.long)
)
self._beam_scores.insert(beam_idx, torch.tensor([score]))
self._beam_hyps.insert(beam_idx, hyp)
if hyps_count + 1 > self.num_beams:
sorted_next_scores, sorted_indices = torch.topk(
torch.cat(self._beam_scores)[beam_idx : beam_idx + hyps_count + 1], hyps_count + 1, largest=False
)
del self._beam_hyps[int((sorted_indices[0] + beam_idx))]
del self._beam_scores[int((sorted_indices[0] + beam_idx))]
self._beam_hyps_worst_scores[hypo_idx] = sorted_next_scores[1]
else:
self._beam_hyps_worst_scores[hypo_idx] = min(score, self._beam_hyps_worst_scores[hypo_idx])
self._beam_hyps_count[hypo_idx] = hyps_count + 1
def hypo_is_done(self, hypo_idx: int, best_sum_logprobs: float, cur_len: int) -> bool:
"""
If there are enough hypotheses and that none of the hypotheses being generated can become better than the worst
one in the heap, then we are done with this sentence.
"""
if self.hypo_len(hypo_idx) < self.num_beams:
return False
elif self.do_early_stopping:
return True
else:
cur_score = best_sum_logprobs / cur_len**self.length_penalty
ret = self._beam_hyps_worst_scores[hypo_idx].item() >= cur_score
return ret
def process(
self,
input_ids: torch.Tensor,
next_scores: torch.Tensor,
next_tokens: torch.Tensor,
next_indices: torch.Tensor,
pad_token_id: Optional[int] = None,
eos_token_id: Optional[int] = None,
) -> Tuple[torch.Tensor, torch.Tensor, torch.Tensor]:
cur_len = input_ids.shape[-1]
batch_size = len(self._beam_hyps_count)
assert batch_size == (input_ids.shape[0] // self.group_size)
device = input_ids.device
next_beam_scores = torch.zeros((batch_size, self.group_size), dtype=next_scores.dtype, device=device)
next_beam_tokens = torch.zeros((batch_size, self.group_size), dtype=next_tokens.dtype, device=device)
next_beam_indices = torch.zeros((batch_size, self.group_size), dtype=next_indices.dtype, device=device)
for batch_idx in range(batch_size):
if self._done[batch_idx]:
assert (
self.hypo_len(batch_idx) >= self.num_beams
), "Batch can only be done if at least {} beams have been generated".format(self.num_beams)
assert (
eos_token_id is not None and pad_token_id is not None
), "generated beams >= num_beams -> eos_token_id and pad_token have to be defined"
# pad the batch
next_beam_scores[batch_idx, :] = 0
next_beam_tokens[batch_idx, :] = pad_token_id
next_beam_indices[batch_idx, :] = 0
continue
# next tokens for this sentence
beam_idx = 0
for beam_token_rank, (next_token, next_score, next_index) in enumerate(
zip(next_tokens[batch_idx], next_scores[batch_idx], next_indices[batch_idx])
):
batch_beam_idx = batch_idx * self.group_size + next_index
# add to generated hypotheses if end of sentence
if (eos_token_id is not None) and (next_token == eos_token_id):
# if beam_token does not belong to top num_beams tokens, it should not be added
is_beam_token_worse_than_top_num_beams = beam_token_rank >= self.group_size
if is_beam_token_worse_than_top_num_beams:
continue
self.hypo_add(
input_ids[batch_beam_idx].clone(),
next_score.item(),
batch_idx,
)
else:
# add next predicted token since it is not eos_token
next_beam_scores[batch_idx, beam_idx] = next_score
next_beam_tokens[batch_idx, beam_idx] = next_token
next_beam_indices[batch_idx, beam_idx] = batch_beam_idx
beam_idx += 1
# once the beam for next step is full, don't add more tokens to it.
if beam_idx == self.group_size:
break
if beam_idx < self.group_size:
raise ValueError(
f"At most {self.group_size} tokens in {next_tokens[batch_idx]} can be equal to `eos_token_id:"
f" {eos_token_id}`. Make sure {next_tokens[batch_idx]} are corrected."
)
# Check if we are done so that we can save a pad step if all(done)
self._done[batch_idx] = self._done[batch_idx] or self.hypo_is_done(
batch_idx,
next_scores[batch_idx].max().item(),
cur_len,
)
return next_beam_scores.view(-1), next_beam_tokens.view(-1), next_beam_indices.view(-1)
def finalize(
self,
input_ids: torch.Tensor,
final_beam_scores: torch.Tensor,
final_beam_tokens: torch.Tensor,
final_beam_indices: torch.Tensor,
pad_token_id: int,
eos_token_id: int,
) -> Tuple[torch.Tensor, torch.Tensor]:
batch_size = len(self._beam_hyps_count)
# finalize all open beam hypotheses and add to generated hypotheses
for batch_idx in range(batch_size):
if self._done[batch_idx]:
continue
# all open beam hypotheses are added to the beam hypothesis
# beam hypothesis class automatically keeps the best beams
for beam_id in range(self.num_beams):
batch_beam_idx = batch_idx * self.num_beams + beam_id
final_score = final_beam_scores[batch_beam_idx].item()
final_tokens = input_ids[batch_beam_idx]
self.hypo_add(final_tokens, final_score, batch_idx)
# select the best hypotheses
# NOTE: torch.Tensor.new_zeros() is not scriptable
sent_lengths = torch.zeros(batch_size * self.num_beam_hyps_to_keep, dtype=torch.long)
best = []
best_scores = torch.zeros(
batch_size * self.num_beam_hyps_to_keep, device=input_ids.device, dtype=torch.float32
)
# retrieve best hypotheses
for i in range(batch_size):
# NOTE: lambda is not scriptable
batch_hypo_start = torch.sum(self._beam_hyps_count[:i]) if i > 0 else torch.tensor(0, dtype=torch.long)
batch_hypo_end = torch.sum(self._beam_hyps_count[: i + 1])
beam_scores = torch.cat(self._beam_scores)[batch_hypo_start:batch_hypo_end]
sorted_next_scores, sorted_indices = torch.topk(beam_scores, len(beam_scores), largest=True)
for j in range(self.num_beam_hyps_to_keep):
best_score = beam_scores[sorted_indices[j]]
best_hyp = self._beam_hyps[batch_hypo_start + sorted_indices[j]]
sent_lengths[self.num_beam_hyps_to_keep * i + j] = len(best_hyp)
# append to lists
best.append(best_hyp)
best_scores[i * self.num_beam_hyps_to_keep + j] = best_score
# prepare for adding eos
sent_max_len = min(sent_lengths.max() + 1, self.max_length)
decoded = torch.zeros(batch_size * self.num_beam_hyps_to_keep, sent_max_len, dtype=torch.long)
# shorter batches are padded if needed
if sent_lengths.min() != sent_lengths.max():
assert pad_token_id is not None, "`pad_token_id` has to be defined"
decoded.fill_(pad_token_id)
# fill with hypotheses and eos_token_id if the latter fits in
for i, hypo in enumerate(best):
decoded[i, : sent_lengths[i]] = hypo
if sent_lengths[i] < self.max_length:
decoded[i, sent_lengths[i]] = eos_token_id
return decoded, best_scores
class BARTBeamSearchGenerator(BARTGenerator):
def __init__(self, model):
super().__init__(model)
self.beam_scorer = BeamSearchScorerTS()
self.device = model.device
@staticmethod
def _expand_inputs_for_generation(
input_ids: torch.Tensor,
attention_mask: torch.Tensor,
last_hidden_state: torch.Tensor,
expand_size: int = 1,
) -> Tuple[torch.Tensor, torch.Tensor, torch.Tensor]:
expanded_return_idx = (
torch.arange(input_ids.shape[0]).view(-1, 1).repeat(1, expand_size).view(-1).to(input_ids.device)
)
input_ids = input_ids.index_select(0, expanded_return_idx)
attention_mask = attention_mask.index_select(0, expanded_return_idx)
last_hidden_state = last_hidden_state.index_select(0, expanded_return_idx.to(last_hidden_state.device))
return input_ids, attention_mask, last_hidden_state
def adjust_logits_during_generation(self, logits, cur_len: int, max_length: int):
if cur_len == 1 and self.config.force_bos_token_to_be_generated:
logits = self._force_token_id_to_be_generated(logits, self.config.bos_token_id)
elif cur_len == max_length - 1 and self.config.eos_token_id is not None:
logits = self._force_token_id_to_be_generated(logits, self.config.eos_token_id)
return logits
@staticmethod
def _force_token_id_to_be_generated(scores, token_id: int):
"""force one of token_ids to be generated by setting prob of all other tokens to 0 (logprob=-float("inf"))"""
mask = torch.full_like(scores, 1, dtype=torch.bool)
mask[:, token_id] = False
return scores.masked_fill(mask, -float("inf"))
def _reorder_cache(self, past: List[torch.Tensor], beam_idx):
# if decoder past is not included in output
# speedy decoding is disabled and no need to reorder
reordered_decoder_past = []
for state in past:
reordered_decoder_past.append(state.index_select(0, beam_idx))
return reordered_decoder_past
def beam_search(
self, input_ids, encoder_output, attention_mask, num_beams, max_length, pad_token_id: int, eos_token_id: int
):
batch_size = self.beam_scorer.batch_size
num_beams = self.beam_scorer.num_beams
batch_beam_size, cur_len = input_ids.shape
assert (
num_beams * batch_size == batch_beam_size
), f"Batch dimension of `input_ids` should be {num_beams * batch_size}, but is {batch_beam_size}."
beam_scores = torch.zeros((batch_size, num_beams), dtype=torch.float, device=input_ids.device)
beam_scores[:, 1:] = -1e9
beam_scores = beam_scores.view((batch_size * num_beams,))
next_tokens = torch.zeros((batch_size, num_beams), dtype=torch.long, device=input_ids.device)
next_indices = torch.zeros((batch_size, num_beams), dtype=torch.long, device=input_ids.device)
past: List[torch.Tensor] = []
while cur_len < max_length:
logits, past = self._decoder_forward(input_ids, encoder_output, attention_mask, past)
next_token_logits = logits[:, -1, :]
# adjust tokens for Bart, *e.g.*
next_token_logits = self.adjust_logits_during_generation(
next_token_logits, cur_len=cur_len, max_length=max_length
)
next_token_scores = F.log_softmax(next_token_logits, dim=-1) # (batch_size * num_beams, vocab_size)
# pre-process distribution
next_token_scores = self.logits_processor(input_ids, next_token_scores)
next_token_scores = next_token_scores + beam_scores[:, None].expand_as(next_token_scores)
# reshape for beam search
vocab_size = next_token_scores.shape[-1]
next_token_scores = next_token_scores.view(batch_size, num_beams * vocab_size)
next_token_scores, next_tokens = torch.topk(
next_token_scores, 2 * num_beams, dim=1, largest=True, sorted=True
)
next_indices = next_tokens // vocab_size
next_tokens = next_tokens % vocab_size
beam_scores, beam_next_tokens, beam_idx = self.beam_scorer.process(
input_ids,
next_token_scores,
next_tokens,
next_indices,
pad_token_id=pad_token_id,
eos_token_id=eos_token_id,
)
input_ids = torch.cat([input_ids[beam_idx, :], beam_next_tokens.unsqueeze(-1)], dim=-1)
cur_len = cur_len + 1
if len(past) > 0:
past = self._reorder_cache(past, beam_idx)
if self.beam_scorer.is_done():
break
sequences, sequence_scores = self.beam_scorer.finalize(
input_ids,
beam_scores,
next_tokens,
next_indices,
pad_token_id=pad_token_id,
eos_token_id=eos_token_id,
)
return sequences
def forward(self, input_ids, attention_mask, num_beams, max_length, decoder_start_token_id):
pad_token_id = self.config.pad_token_id
bos_token_id = self.config.bos_token_id
eos_token_id = self.config.eos_token_id
# special case if pad_token_id is not defined
if pad_token_id is None and eos_token_id is not None:
# logger.warning(f"Setting `pad_token_id` to `eos_token_id`:{eos_token_id} for open-end generation.")
pad_token_id = eos_token_id
encoder_output = self._encoder_forward(input_ids, attention_mask)
input_ids = self._prepare_decoder_input_ids_for_generation(
input_ids,
decoder_start_token_id=decoder_start_token_id,
bos_token_id=bos_token_id,
)
batch_size = input_ids.shape[0]
length_penalty = self.config.length_penalty
num_return_sequences = self.config.num_return_sequences
early_stopping = True
self.beam_scorer.init(
batch_size=batch_size,
max_length=max_length,
num_beams=num_beams,
device=self.device,
length_penalty=length_penalty,
do_early_stopping=early_stopping,
num_beam_hyps_to_keep=num_return_sequences,
)
input_ids, attention_mask, encoder_output = self._expand_inputs_for_generation(
input_ids,
attention_mask,
encoder_output,
expand_size=num_beams,
)
return self.beam_search(
input_ids=input_ids,
encoder_output=encoder_output,
attention_mask=attention_mask,
num_beams=num_beams,
max_length=max_length,
pad_token_id=pad_token_id,
eos_token_id=eos_token_id,
)
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hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/deebert/README.md
|
# DeeBERT: Early Exiting for *BERT
This is the code base for the paper [DeeBERT: Dynamic Early Exiting for Accelerating BERT Inference](https://www.aclweb.org/anthology/2020.acl-main.204/), modified from its [original code base](https://github.com/castorini/deebert).
The original code base also has information for downloading sample models that we have trained in advance.
## Usage
There are three scripts in the folder which can be run directly.
In each script, there are several things to modify before running:
* `PATH_TO_DATA`: path to the GLUE dataset.
* `--output_dir`: path for saving fine-tuned models. Default: `./saved_models`.
* `--plot_data_dir`: path for saving evaluation results. Default: `./results`. Results are printed to stdout and also saved to `npy` files in this directory to facilitate plotting figures and further analyses.
* `MODEL_TYPE`: bert or roberta
* `MODEL_SIZE`: base or large
* `DATASET`: SST-2, MRPC, RTE, QNLI, QQP, or MNLI
#### train_deebert.sh
This is for fine-tuning DeeBERT models.
#### eval_deebert.sh
This is for evaluating each exit layer for fine-tuned DeeBERT models.
#### entropy_eval.sh
This is for evaluating fine-tuned DeeBERT models, given a number of different early exit entropy thresholds.
## Citation
Please cite our paper if you find the resource useful:
```
@inproceedings{xin-etal-2020-deebert,
title = "{D}ee{BERT}: Dynamic Early Exiting for Accelerating {BERT} Inference",
author = "Xin, Ji and
Tang, Raphael and
Lee, Jaejun and
Yu, Yaoliang and
Lin, Jimmy",
booktitle = "Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics",
month = jul,
year = "2020",
address = "Online",
publisher = "Association for Computational Linguistics",
url = "https://www.aclweb.org/anthology/2020.acl-main.204",
pages = "2246--2251",
}
```
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hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/deebert/train_deebert.sh
|
#!/bin/bash
export CUDA_VISIBLE_DEVICES=0
PATH_TO_DATA=/h/xinji/projects/GLUE
MODEL_TYPE=bert # bert or roberta
MODEL_SIZE=base # base or large
DATASET=MRPC # SST-2, MRPC, RTE, QNLI, QQP, or MNLI
MODEL_NAME=${MODEL_TYPE}-${MODEL_SIZE}
EPOCHS=10
if [ $MODEL_TYPE = 'bert' ]
then
EPOCHS=3
MODEL_NAME=${MODEL_NAME}-uncased
fi
python -u run_glue_deebert.py \
--model_type $MODEL_TYPE \
--model_name_or_path $MODEL_NAME \
--task_name $DATASET \
--do_train \
--do_eval \
--do_lower_case \
--data_dir $PATH_TO_DATA/$DATASET \
--max_seq_length 128 \
--per_gpu_eval_batch_size=1 \
--per_gpu_train_batch_size=8 \
--learning_rate 2e-5 \
--num_train_epochs $EPOCHS \
--overwrite_output_dir \
--seed 42 \
--output_dir ./saved_models/${MODEL_TYPE}-${MODEL_SIZE}/$DATASET/two_stage \
--plot_data_dir ./results/ \
--save_steps 0 \
--overwrite_cache \
--eval_after_first_stage
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/deebert/eval_deebert.sh
|
#!/bin/bash
export CUDA_VISIBLE_DEVICES=0
PATH_TO_DATA=/h/xinji/projects/GLUE
MODEL_TYPE=bert # bert or roberta
MODEL_SIZE=base # base or large
DATASET=MRPC # SST-2, MRPC, RTE, QNLI, QQP, or MNLI
MODEL_NAME=${MODEL_TYPE}-${MODEL_SIZE}
if [ $MODEL_TYPE = 'bert' ]
then
MODEL_NAME=${MODEL_NAME}-uncased
fi
python -u run_glue_deebert.py \
--model_type $MODEL_TYPE \
--model_name_or_path ./saved_models/${MODEL_TYPE}-${MODEL_SIZE}/$DATASET/two_stage \
--task_name $DATASET \
--do_eval \
--do_lower_case \
--data_dir $PATH_TO_DATA/$DATASET \
--output_dir ./saved_models/${MODEL_TYPE}-${MODEL_SIZE}/$DATASET/two_stage \
--plot_data_dir ./results/ \
--max_seq_length 128 \
--eval_each_highway \
--eval_highway \
--overwrite_cache \
--per_gpu_eval_batch_size=1
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/deebert/entropy_eval.sh
|
#!/bin/bash
export CUDA_VISIBLE_DEVICES=0
PATH_TO_DATA=/h/xinji/projects/GLUE
MODEL_TYPE=bert # bert or roberta
MODEL_SIZE=base # base or large
DATASET=MRPC # SST-2, MRPC, RTE, QNLI, QQP, or MNLI
MODEL_NAME=${MODEL_TYPE}-${MODEL_SIZE}
if [ $MODEL_TYPE = 'bert' ]
then
MODEL_NAME=${MODEL_NAME}-uncased
fi
ENTROPIES="0 0.1 0.2 0.3 0.4 0.5 0.6 0.7"
for ENTROPY in $ENTROPIES; do
python -u run_glue_deebert.py \
--model_type $MODEL_TYPE \
--model_name_or_path ./saved_models/${MODEL_TYPE}-${MODEL_SIZE}/$DATASET/two_stage \
--task_name $DATASET \
--do_eval \
--do_lower_case \
--data_dir $PATH_TO_DATA/$DATASET \
--output_dir ./saved_models/${MODEL_TYPE}-${MODEL_SIZE}/$DATASET/two_stage \
--plot_data_dir ./results/ \
--max_seq_length 128 \
--early_exit_entropy $ENTROPY \
--eval_highway \
--overwrite_cache \
--per_gpu_eval_batch_size=1
done
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hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/deebert/requirements.txt
|
transformers == 3.5.1
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/deebert/run_glue_deebert.py
|
from __future__ import absolute_import, division, print_function
import argparse
import glob
import logging
import os
import random
import time
import numpy as np
import torch
from torch import nn
from torch.utils.data import DataLoader, RandomSampler, SequentialSampler, TensorDataset
from torch.utils.data.distributed import DistributedSampler
from tqdm import tqdm, trange
import transformers
from src.modeling_highway_bert import DeeBertForSequenceClassification
from src.modeling_highway_roberta import DeeRobertaForSequenceClassification
from transformers import (
WEIGHTS_NAME,
AdamW,
BertConfig,
BertTokenizer,
RobertaConfig,
RobertaTokenizer,
get_linear_schedule_with_warmup,
)
from transformers import glue_compute_metrics as compute_metrics
from transformers import glue_convert_examples_to_features as convert_examples_to_features
from transformers import glue_output_modes as output_modes
from transformers import glue_processors as processors
from transformers.trainer_utils import is_main_process
try:
from torch.utils.tensorboard import SummaryWriter
except ImportError:
from tensorboardX import SummaryWriter
logger = logging.getLogger(__name__)
MODEL_CLASSES = {
"bert": (BertConfig, DeeBertForSequenceClassification, BertTokenizer),
"roberta": (RobertaConfig, DeeRobertaForSequenceClassification, RobertaTokenizer),
}
def set_seed(args):
random.seed(args.seed)
np.random.seed(args.seed)
torch.manual_seed(args.seed)
if args.n_gpu > 0:
torch.cuda.manual_seed_all(args.seed)
def get_wanted_result(result):
if "spearmanr" in result:
print_result = result["spearmanr"]
elif "f1" in result:
print_result = result["f1"]
elif "mcc" in result:
print_result = result["mcc"]
elif "acc" in result:
print_result = result["acc"]
else:
raise ValueError("Primary metric unclear in the results")
return print_result
def train(args, train_dataset, model, tokenizer, train_highway=False):
"""Train the model"""
if args.local_rank in [-1, 0]:
tb_writer = SummaryWriter()
args.train_batch_size = args.per_gpu_train_batch_size * max(1, args.n_gpu)
train_sampler = RandomSampler(train_dataset) if args.local_rank == -1 else DistributedSampler(train_dataset)
train_dataloader = DataLoader(train_dataset, sampler=train_sampler, batch_size=args.train_batch_size)
if args.max_steps > 0:
t_total = args.max_steps
args.num_train_epochs = args.max_steps // (len(train_dataloader) // args.gradient_accumulation_steps) + 1
else:
t_total = len(train_dataloader) // args.gradient_accumulation_steps * args.num_train_epochs
# Prepare optimizer and schedule (linear warmup and decay)
no_decay = ["bias", "LayerNorm.weight"]
if train_highway:
optimizer_grouped_parameters = [
{
"params": [
p
for n, p in model.named_parameters()
if ("highway" in n) and (not any(nd in n for nd in no_decay))
],
"weight_decay": args.weight_decay,
},
{
"params": [
p for n, p in model.named_parameters() if ("highway" in n) and (any(nd in n for nd in no_decay))
],
"weight_decay": 0.0,
},
]
else:
optimizer_grouped_parameters = [
{
"params": [
p
for n, p in model.named_parameters()
if ("highway" not in n) and (not any(nd in n for nd in no_decay))
],
"weight_decay": args.weight_decay,
},
{
"params": [
p
for n, p in model.named_parameters()
if ("highway" not in n) and (any(nd in n for nd in no_decay))
],
"weight_decay": 0.0,
},
]
optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate, eps=args.adam_epsilon)
scheduler = get_linear_schedule_with_warmup(
optimizer, num_warmup_steps=args.warmup_steps, num_training_steps=t_total
)
if args.fp16:
try:
from apex import amp
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
model, optimizer = amp.initialize(model, optimizer, opt_level=args.fp16_opt_level)
# multi-gpu training (should be after apex fp16 initialization)
if args.n_gpu > 1:
model = nn.DataParallel(model)
# Distributed training (should be after apex fp16 initialization)
if args.local_rank != -1:
model = nn.parallel.DistributedDataParallel(
model, device_ids=[args.local_rank], output_device=args.local_rank, find_unused_parameters=True
)
# Train!
logger.info("***** Running training *****")
logger.info(" Num examples = %d", len(train_dataset))
logger.info(" Num Epochs = %d", args.num_train_epochs)
logger.info(" Instantaneous batch size per GPU = %d", args.per_gpu_train_batch_size)
logger.info(
" Total train batch size (w. parallel, distributed & accumulation) = %d",
args.train_batch_size
* args.gradient_accumulation_steps
* (torch.distributed.get_world_size() if args.local_rank != -1 else 1),
)
logger.info(" Gradient Accumulation steps = %d", args.gradient_accumulation_steps)
logger.info(" Total optimization steps = %d", t_total)
global_step = 0
tr_loss, logging_loss = 0.0, 0.0
model.zero_grad()
train_iterator = trange(int(args.num_train_epochs), desc="Epoch", disable=args.local_rank not in [-1, 0])
set_seed(args) # Added here for reproductibility (even between python 2 and 3)
for _ in train_iterator:
epoch_iterator = tqdm(train_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])
for step, batch in enumerate(epoch_iterator):
model.train()
batch = tuple(t.to(args.device) for t in batch)
inputs = {"input_ids": batch[0], "attention_mask": batch[1], "labels": batch[3]}
if args.model_type != "distilbert":
inputs["token_type_ids"] = (
batch[2] if args.model_type in ["bert", "xlnet"] else None
) # XLM, DistilBERT and RoBERTa don't use segment_ids
inputs["train_highway"] = train_highway
outputs = model(**inputs)
loss = outputs[0] # model outputs are always tuple in transformers (see doc)
if args.n_gpu > 1:
loss = loss.mean() # mean() to average on multi-gpu parallel training
if args.gradient_accumulation_steps > 1:
loss = loss / args.gradient_accumulation_steps
if args.fp16:
with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
tr_loss += loss.item()
if (step + 1) % args.gradient_accumulation_steps == 0:
if args.fp16:
nn.utils.clip_grad_norm_(amp.master_params(optimizer), args.max_grad_norm)
else:
nn.utils.clip_grad_norm_(model.parameters(), args.max_grad_norm)
optimizer.step()
scheduler.step() # Update learning rate schedule
model.zero_grad()
global_step += 1
if args.local_rank in [-1, 0] and args.logging_steps > 0 and global_step % args.logging_steps == 0:
# Log metrics
if (
args.local_rank == -1 and args.evaluate_during_training
): # Only evaluate when single GPU otherwise metrics may not average well
results = evaluate(args, model, tokenizer)
for key, value in results.items():
tb_writer.add_scalar("eval_{}".format(key), value, global_step)
tb_writer.add_scalar("lr", scheduler.get_lr()[0], global_step)
tb_writer.add_scalar("loss", (tr_loss - logging_loss) / args.logging_steps, global_step)
logging_loss = tr_loss
if args.local_rank in [-1, 0] and args.save_steps > 0 and global_step % args.save_steps == 0:
# Save model checkpoint
output_dir = os.path.join(args.output_dir, "checkpoint-{}".format(global_step))
if not os.path.exists(output_dir):
os.makedirs(output_dir)
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(output_dir)
torch.save(args, os.path.join(output_dir, "training_args.bin"))
logger.info("Saving model checkpoint to %s", output_dir)
if args.max_steps > 0 and global_step > args.max_steps:
epoch_iterator.close()
break
if args.max_steps > 0 and global_step > args.max_steps:
train_iterator.close()
break
if args.local_rank in [-1, 0]:
tb_writer.close()
return global_step, tr_loss / global_step
def evaluate(args, model, tokenizer, prefix="", output_layer=-1, eval_highway=False):
# Loop to handle MNLI double evaluation (matched, mis-matched)
eval_task_names = ("mnli", "mnli-mm") if args.task_name == "mnli" else (args.task_name,)
eval_outputs_dirs = (args.output_dir, args.output_dir + "-MM") if args.task_name == "mnli" else (args.output_dir,)
results = {}
for eval_task, eval_output_dir in zip(eval_task_names, eval_outputs_dirs):
eval_dataset = load_and_cache_examples(args, eval_task, tokenizer, evaluate=True)
if not os.path.exists(eval_output_dir) and args.local_rank in [-1, 0]:
os.makedirs(eval_output_dir)
args.eval_batch_size = args.per_gpu_eval_batch_size * max(1, args.n_gpu)
# Note that DistributedSampler samples randomly
eval_sampler = SequentialSampler(eval_dataset) if args.local_rank == -1 else DistributedSampler(eval_dataset)
eval_dataloader = DataLoader(eval_dataset, sampler=eval_sampler, batch_size=args.eval_batch_size)
# multi-gpu eval
if args.n_gpu > 1:
model = nn.DataParallel(model)
# Eval!
logger.info("***** Running evaluation {} *****".format(prefix))
logger.info(" Num examples = %d", len(eval_dataset))
logger.info(" Batch size = %d", args.eval_batch_size)
eval_loss = 0.0
nb_eval_steps = 0
preds = None
out_label_ids = None
exit_layer_counter = {(i + 1): 0 for i in range(model.num_layers)}
st = time.time()
for batch in tqdm(eval_dataloader, desc="Evaluating"):
model.eval()
batch = tuple(t.to(args.device) for t in batch)
with torch.no_grad():
inputs = {"input_ids": batch[0], "attention_mask": batch[1], "labels": batch[3]}
if args.model_type != "distilbert":
inputs["token_type_ids"] = (
batch[2] if args.model_type in ["bert", "xlnet"] else None
) # XLM, DistilBERT and RoBERTa don't use segment_ids
if output_layer >= 0:
inputs["output_layer"] = output_layer
outputs = model(**inputs)
if eval_highway:
exit_layer_counter[outputs[-1]] += 1
tmp_eval_loss, logits = outputs[:2]
eval_loss += tmp_eval_loss.mean().item()
nb_eval_steps += 1
if preds is None:
preds = logits.detach().cpu().numpy()
out_label_ids = inputs["labels"].detach().cpu().numpy()
else:
preds = np.append(preds, logits.detach().cpu().numpy(), axis=0)
out_label_ids = np.append(out_label_ids, inputs["labels"].detach().cpu().numpy(), axis=0)
eval_time = time.time() - st
logger.info("Eval time: {}".format(eval_time))
eval_loss = eval_loss / nb_eval_steps
if args.output_mode == "classification":
preds = np.argmax(preds, axis=1)
elif args.output_mode == "regression":
preds = np.squeeze(preds)
result = compute_metrics(eval_task, preds, out_label_ids)
results.update(result)
if eval_highway:
logger.info("Exit layer counter: {}".format(exit_layer_counter))
actual_cost = sum([l * c for l, c in exit_layer_counter.items()])
full_cost = len(eval_dataloader) * model.num_layers
logger.info("Expected saving: {}".format(actual_cost / full_cost))
if args.early_exit_entropy >= 0:
save_fname = (
args.plot_data_dir
+ "/"
+ args.model_name_or_path[2:]
+ "/entropy_{}.npy".format(args.early_exit_entropy)
)
if not os.path.exists(os.path.dirname(save_fname)):
os.makedirs(os.path.dirname(save_fname))
print_result = get_wanted_result(result)
np.save(save_fname, np.array([exit_layer_counter, eval_time, actual_cost / full_cost, print_result]))
logger.info("Entropy={}\tResult={:.2f}".format(args.early_exit_entropy, 100 * print_result))
output_eval_file = os.path.join(eval_output_dir, prefix, "eval_results.txt")
with open(output_eval_file, "w") as writer:
logger.info("***** Eval results {} *****".format(prefix))
for key in sorted(result.keys()):
logger.info(" %s = %s", key, str(result[key]))
writer.write("%s = %s\n" % (key, str(result[key])))
return results
def load_and_cache_examples(args, task, tokenizer, evaluate=False):
if args.local_rank not in [-1, 0] and not evaluate:
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
processor = processors[task]()
output_mode = output_modes[task]
# Load data features from cache or dataset file
cached_features_file = os.path.join(
args.data_dir,
"cached_{}_{}_{}_{}".format(
"dev" if evaluate else "train",
list(filter(None, args.model_name_or_path.split("/"))).pop(),
str(args.max_seq_length),
str(task),
),
)
if os.path.exists(cached_features_file) and not args.overwrite_cache:
logger.info("Loading features from cached file %s", cached_features_file)
features = torch.load(cached_features_file)
else:
logger.info("Creating features from dataset file at %s", args.data_dir)
label_list = processor.get_labels()
if task in ["mnli", "mnli-mm"] and args.model_type in ["roberta"]:
# HACK(label indices are swapped in RoBERTa pretrained model)
label_list[1], label_list[2] = label_list[2], label_list[1]
examples = (
processor.get_dev_examples(args.data_dir) if evaluate else processor.get_train_examples(args.data_dir)
)
features = convert_examples_to_features(
examples,
tokenizer,
label_list=label_list,
max_length=args.max_seq_length,
output_mode=output_mode,
)
if args.local_rank in [-1, 0]:
logger.info("Saving features into cached file %s", cached_features_file)
torch.save(features, cached_features_file)
if args.local_rank == 0 and not evaluate:
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
# Convert to Tensors and build dataset
all_input_ids = torch.tensor([f.input_ids for f in features], dtype=torch.long)
all_attention_mask = torch.tensor([f.attention_mask for f in features], dtype=torch.long)
if features[0].token_type_ids is None:
# For RoBERTa (a potential bug!)
all_token_type_ids = torch.tensor([[0] * args.max_seq_length for f in features], dtype=torch.long)
else:
all_token_type_ids = torch.tensor([f.token_type_ids for f in features], dtype=torch.long)
if output_mode == "classification":
all_labels = torch.tensor([f.label for f in features], dtype=torch.long)
elif output_mode == "regression":
all_labels = torch.tensor([f.label for f in features], dtype=torch.float)
dataset = TensorDataset(all_input_ids, all_attention_mask, all_token_type_ids, all_labels)
return dataset
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the .tsv files (or other data files) for the task.",
)
parser.add_argument(
"--model_type",
default=None,
type=str,
required=True,
help="Model type selected in the list: " + ", ".join(MODEL_CLASSES.keys()),
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pre-trained model or shortcut name.",
)
parser.add_argument(
"--task_name",
default=None,
type=str,
required=True,
help="The name of the task to train selected in the list: " + ", ".join(processors.keys()),
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
parser.add_argument(
"--plot_data_dir",
default="./plotting/",
type=str,
required=False,
help="The directory to store data for plotting figures.",
)
# Other parameters
parser.add_argument(
"--config_name", default="", type=str, help="Pretrained config name or path if not the same as model_name"
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default="",
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--max_seq_length",
default=128,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_eval", action="store_true", help="Whether to run eval on the dev set.")
parser.add_argument(
"--evaluate_during_training", action="store_true", help="Rul evaluation during training at each logging step."
)
parser.add_argument(
"--do_lower_case", action="store_true", help="Set this flag if you are using an uncased model."
)
parser.add_argument("--eval_each_highway", action="store_true", help="Set this flag to evaluate each highway.")
parser.add_argument(
"--eval_after_first_stage",
action="store_true",
help="Set this flag to evaluate after training only bert (not highway).",
)
parser.add_argument("--eval_highway", action="store_true", help="Set this flag if it's evaluating highway models")
parser.add_argument("--per_gpu_train_batch_size", default=8, type=int, help="Batch size per GPU/CPU for training.")
parser.add_argument(
"--per_gpu_eval_batch_size", default=8, type=int, help="Batch size per GPU/CPU for evaluation."
)
parser.add_argument(
"--gradient_accumulation_steps",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight deay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--max_grad_norm", default=1.0, type=float, help="Max gradient norm.")
parser.add_argument(
"--num_train_epochs", default=3.0, type=float, help="Total number of training epochs to perform."
)
parser.add_argument(
"--max_steps",
default=-1,
type=int,
help="If > 0: set total number of training steps to perform. Override num_train_epochs.",
)
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument("--early_exit_entropy", default=-1, type=float, help="Entropy threshold for early exit.")
parser.add_argument("--logging_steps", type=int, default=50, help="Log every X updates steps.")
parser.add_argument("--save_steps", type=int, default=50, help="Save checkpoint every X updates steps.")
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument("--no_cuda", action="store_true", help="Avoid using CUDA when available")
parser.add_argument(
"--overwrite_output_dir", action="store_true", help="Overwrite the content of the output directory"
)
parser.add_argument(
"--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets"
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O1",
help=(
"For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']. "
"See details at https://nvidia.github.io/apex/amp.html"
),
)
parser.add_argument("--local_rank", type=int, default=-1, help="For distributed training: local_rank")
parser.add_argument("--server_ip", type=str, default="", help="For distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="For distant debugging.")
args = parser.parse_args()
if (
os.path.exists(args.output_dir)
and os.listdir(args.output_dir)
and args.do_train
and not args.overwrite_output_dir
):
raise ValueError(
"Output directory ({}) already exists and is not empty. Use --overwrite_output_dir to overcome.".format(
args.output_dir
)
)
# Setup distant debugging if needed
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
# Setup CUDA, GPU & distributed training
if args.local_rank == -1 or args.no_cuda:
device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = torch.cuda.device_count()
else: # Initializes the distributed backend which will take care of sychronizing nodes/GPUs
torch.cuda.set_device(args.local_rank)
device = torch.device("cuda", args.local_rank)
torch.distributed.init_process_group(backend="nccl")
args.n_gpu = 1
args.device = device
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
args.local_rank,
device,
args.n_gpu,
bool(args.local_rank != -1),
args.fp16,
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
# Set seed
set_seed(args)
# Prepare GLUE task
args.task_name = args.task_name.lower()
if args.task_name not in processors:
raise ValueError("Task not found: %s" % (args.task_name))
processor = processors[args.task_name]()
args.output_mode = output_modes[args.task_name]
label_list = processor.get_labels()
num_labels = len(label_list)
# Load pretrained model and tokenizer
if args.local_rank not in [-1, 0]:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
args.model_type = args.model_type.lower()
config_class, model_class, tokenizer_class = MODEL_CLASSES[args.model_type]
config = config_class.from_pretrained(
args.config_name if args.config_name else args.model_name_or_path,
num_labels=num_labels,
finetuning_task=args.task_name,
cache_dir=args.cache_dir if args.cache_dir else None,
)
tokenizer = tokenizer_class.from_pretrained(
args.tokenizer_name if args.tokenizer_name else args.model_name_or_path,
do_lower_case=args.do_lower_case,
cache_dir=args.cache_dir if args.cache_dir else None,
)
model = model_class.from_pretrained(
args.model_name_or_path,
from_tf=bool(".ckpt" in args.model_name_or_path),
config=config,
cache_dir=args.cache_dir if args.cache_dir else None,
)
if args.model_type == "bert":
model.bert.encoder.set_early_exit_entropy(args.early_exit_entropy)
model.bert.init_highway_pooler()
elif args.model_type == "roberta":
model.roberta.encoder.set_early_exit_entropy(args.early_exit_entropy)
model.roberta.init_highway_pooler()
else:
raise NotImplementedError()
if args.local_rank == 0:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
model.to(args.device)
logger.info("Training/evaluation parameters %s", args)
# Training
if args.do_train:
train_dataset = load_and_cache_examples(args, args.task_name, tokenizer, evaluate=False)
global_step, tr_loss = train(args, train_dataset, model, tokenizer)
logger.info(" global_step = %s, average loss = %s", global_step, tr_loss)
if args.eval_after_first_stage:
result = evaluate(args, model, tokenizer, prefix="")
print_result = get_wanted_result(result)
train(args, train_dataset, model, tokenizer, train_highway=True)
# Saving best-practices: if you use defaults names for the model, you can reload it using from_pretrained()
if args.do_train and (args.local_rank == -1 or torch.distributed.get_rank() == 0):
# Create output directory if needed
if not os.path.exists(args.output_dir) and args.local_rank in [-1, 0]:
os.makedirs(args.output_dir)
logger.info("Saving model checkpoint to %s", args.output_dir)
# Save a trained model, configuration and tokenizer using `save_pretrained()`.
# They can then be reloaded using `from_pretrained()`
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(args.output_dir)
tokenizer.save_pretrained(args.output_dir)
# Good practice: save your training arguments together with the trained model
torch.save(args, os.path.join(args.output_dir, "training_args.bin"))
# Load a trained model and vocabulary that you have fine-tuned
model = model_class.from_pretrained(args.output_dir)
tokenizer = tokenizer_class.from_pretrained(args.output_dir)
model.to(args.device)
# Evaluation
results = {}
if args.do_eval and args.local_rank in [-1, 0]:
tokenizer = tokenizer_class.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case)
checkpoints = [args.output_dir]
if args.eval_all_checkpoints:
checkpoints = [
os.path.dirname(c) for c in sorted(glob.glob(args.output_dir + "/**/" + WEIGHTS_NAME, recursive=True))
]
logger.info("Evaluate the following checkpoints: %s", checkpoints)
for checkpoint in checkpoints:
global_step = checkpoint.split("-")[-1] if len(checkpoints) > 1 else ""
prefix = checkpoint.split("/")[-1] if checkpoint.find("checkpoint") != -1 else ""
model = model_class.from_pretrained(checkpoint)
if args.model_type == "bert":
model.bert.encoder.set_early_exit_entropy(args.early_exit_entropy)
elif args.model_type == "roberta":
model.roberta.encoder.set_early_exit_entropy(args.early_exit_entropy)
else:
raise NotImplementedError()
model.to(args.device)
result = evaluate(args, model, tokenizer, prefix=prefix, eval_highway=args.eval_highway)
print_result = get_wanted_result(result)
logger.info("Result: {}".format(print_result))
if args.eval_each_highway:
last_layer_results = print_result
each_layer_results = []
for i in range(model.num_layers):
logger.info("\n")
_result = evaluate(
args, model, tokenizer, prefix=prefix, output_layer=i, eval_highway=args.eval_highway
)
if i + 1 < model.num_layers:
each_layer_results.append(get_wanted_result(_result))
each_layer_results.append(last_layer_results)
save_fname = args.plot_data_dir + "/" + args.model_name_or_path[2:] + "/each_layer.npy"
if not os.path.exists(os.path.dirname(save_fname)):
os.makedirs(os.path.dirname(save_fname))
np.save(save_fname, np.array(each_layer_results))
info_str = "Score of each layer:"
for i in range(model.num_layers):
info_str += " {:.2f}".format(100 * each_layer_results[i])
logger.info(info_str)
result = {k + "_{}".format(global_step): v for k, v in result.items()}
results.update(result)
return results
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/deebert/test_glue_deebert.py
|
import argparse
import logging
import sys
from unittest.mock import patch
import run_glue_deebert
from transformers.testing_utils import TestCasePlus, get_gpu_count, require_torch_non_multi_gpu, slow
logging.basicConfig(level=logging.DEBUG)
logger = logging.getLogger()
def get_setup_file():
parser = argparse.ArgumentParser()
parser.add_argument("-f")
args = parser.parse_args()
return args.f
class DeeBertTests(TestCasePlus):
def setup(self) -> None:
stream_handler = logging.StreamHandler(sys.stdout)
logger.addHandler(stream_handler)
def run_and_check(self, args):
n_gpu = get_gpu_count()
if n_gpu > 1:
pass
# XXX: doesn't quite work with n_gpu > 1 https://github.com/huggingface/transformers/issues/10560
# script = f"{self.examples_dir_str}/research_projects/deebert/run_glue_deebert.py"
# distributed_args = f"-m torch.distributed.launch --nproc_per_node={n_gpu} {script}".split()
# cmd = [sys.executable] + distributed_args + args
# execute_subprocess_async(cmd, env=self.get_env())
# XXX: test the results - need to save them first into .json file
else:
args.insert(0, "run_glue_deebert.py")
with patch.object(sys, "argv", args):
result = run_glue_deebert.main()
for value in result.values():
self.assertGreaterEqual(value, 0.666)
@slow
@require_torch_non_multi_gpu
def test_glue_deebert_train(self):
train_args = """
--model_type roberta
--model_name_or_path roberta-base
--task_name MRPC
--do_train
--do_eval
--do_lower_case
--data_dir ./tests/fixtures/tests_samples/MRPC/
--max_seq_length 128
--per_gpu_eval_batch_size=1
--per_gpu_train_batch_size=8
--learning_rate 2e-4
--num_train_epochs 3
--overwrite_output_dir
--seed 42
--output_dir ./examples/deebert/saved_models/roberta-base/MRPC/two_stage
--plot_data_dir ./examples/deebert/results/
--save_steps 0
--overwrite_cache
--eval_after_first_stage
""".split()
self.run_and_check(train_args)
eval_args = """
--model_type roberta
--model_name_or_path ./examples/deebert/saved_models/roberta-base/MRPC/two_stage
--task_name MRPC
--do_eval
--do_lower_case
--data_dir ./tests/fixtures/tests_samples/MRPC/
--output_dir ./examples/deebert/saved_models/roberta-base/MRPC/two_stage
--plot_data_dir ./examples/deebert/results/
--max_seq_length 128
--eval_each_highway
--eval_highway
--overwrite_cache
--per_gpu_eval_batch_size=1
""".split()
self.run_and_check(eval_args)
entropy_eval_args = """
--model_type roberta
--model_name_or_path ./examples/deebert/saved_models/roberta-base/MRPC/two_stage
--task_name MRPC
--do_eval
--do_lower_case
--data_dir ./tests/fixtures/tests_samples/MRPC/
--output_dir ./examples/deebert/saved_models/roberta-base/MRPC/two_stage
--plot_data_dir ./examples/deebert/results/
--max_seq_length 128
--early_exit_entropy 0.1
--eval_highway
--overwrite_cache
--per_gpu_eval_batch_size=1
""".split()
self.run_and_check(entropy_eval_args)
| 0 |
hf_public_repos/transformers/examples/research_projects/deebert
|
hf_public_repos/transformers/examples/research_projects/deebert/src/modeling_highway_roberta.py
|
from __future__ import absolute_import, division, print_function, unicode_literals
from torch import nn
from torch.nn import CrossEntropyLoss, MSELoss
from transformers import RobertaConfig
from transformers.file_utils import add_start_docstrings, add_start_docstrings_to_model_forward
from transformers.models.roberta.modeling_roberta import (
ROBERTA_INPUTS_DOCSTRING,
ROBERTA_START_DOCSTRING,
RobertaEmbeddings,
)
from .modeling_highway_bert import BertPreTrainedModel, DeeBertModel, HighwayException, entropy
@add_start_docstrings(
"The RoBERTa Model transformer with early exiting (DeeRoBERTa). ",
ROBERTA_START_DOCSTRING,
)
class DeeRobertaModel(DeeBertModel):
config_class = RobertaConfig
base_model_prefix = "roberta"
def __init__(self, config):
super().__init__(config)
self.embeddings = RobertaEmbeddings(config)
self.init_weights()
@add_start_docstrings(
"""RoBERTa Model (with early exiting - DeeRoBERTa) with a classifier on top,
also takes care of multi-layer training. """,
ROBERTA_START_DOCSTRING,
)
class DeeRobertaForSequenceClassification(BertPreTrainedModel):
config_class = RobertaConfig
base_model_prefix = "roberta"
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.num_layers = config.num_hidden_layers
self.roberta = DeeRobertaModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, self.config.num_labels)
@add_start_docstrings_to_model_forward(ROBERTA_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
output_layer=-1,
train_highway=False,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss.
Indices should be in :obj:`[0, ..., config.num_labels - 1]`.
If :obj:`config.num_labels == 1` a regression loss is computed (Mean-Square loss),
If :obj:`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~transformers.RobertaConfig`) and inputs:
loss (:obj:`torch.FloatTensor` of shape :obj:`(1,)`, `optional`, returned when :obj:`label` is provided):
Classification (or regression if config.num_labels==1) loss.
logits (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, config.num_labels)`):
Classification (or regression if config.num_labels==1) scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
highway_exits (:obj:`tuple(tuple(torch.Tensor))`:
Tuple of each early exit's results (total length: number of layers)
Each tuple is again, a tuple of length 2 - the first entry is logits and the second entry is hidden states.
"""
exit_layer = self.num_layers
try:
outputs = self.roberta(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
outputs = (logits,) + outputs[2:] # add hidden states and attention if they are here
except HighwayException as e:
outputs = e.message
exit_layer = e.exit_layer
logits = outputs[0]
if not self.training:
original_entropy = entropy(logits)
highway_entropy = []
highway_logits_all = []
if labels is not None:
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
loss = loss_fct(logits.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
# work with highway exits
highway_losses = []
for highway_exit in outputs[-1]:
highway_logits = highway_exit[0]
if not self.training:
highway_logits_all.append(highway_logits)
highway_entropy.append(highway_exit[2])
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
highway_loss = loss_fct(highway_logits.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
highway_loss = loss_fct(highway_logits.view(-1, self.num_labels), labels.view(-1))
highway_losses.append(highway_loss)
if train_highway:
outputs = (sum(highway_losses[:-1]),) + outputs
# exclude the final highway, of course
else:
outputs = (loss,) + outputs
if not self.training:
outputs = outputs + ((original_entropy, highway_entropy), exit_layer)
if output_layer >= 0:
outputs = (
(outputs[0],) + (highway_logits_all[output_layer],) + outputs[2:]
) # use the highway of the last layer
return outputs # (loss), logits, (hidden_states), (attentions), entropy
| 0 |
hf_public_repos/transformers/examples/research_projects/deebert
|
hf_public_repos/transformers/examples/research_projects/deebert/src/modeling_highway_bert.py
|
import torch
from torch import nn
from torch.nn import CrossEntropyLoss, MSELoss
from transformers.file_utils import add_start_docstrings, add_start_docstrings_to_model_forward
from transformers.models.bert.modeling_bert import (
BERT_INPUTS_DOCSTRING,
BERT_START_DOCSTRING,
BertEmbeddings,
BertLayer,
BertPooler,
BertPreTrainedModel,
)
def entropy(x):
"""Calculate entropy of a pre-softmax logit Tensor"""
exp_x = torch.exp(x)
A = torch.sum(exp_x, dim=1) # sum of exp(x_i)
B = torch.sum(x * exp_x, dim=1) # sum of x_i * exp(x_i)
return torch.log(A) - B / A
class DeeBertEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.output_attentions = config.output_attentions
self.output_hidden_states = config.output_hidden_states
self.layer = nn.ModuleList([BertLayer(config) for _ in range(config.num_hidden_layers)])
self.highway = nn.ModuleList([BertHighway(config) for _ in range(config.num_hidden_layers)])
self.early_exit_entropy = [-1 for _ in range(config.num_hidden_layers)]
def set_early_exit_entropy(self, x):
if isinstance(x, (float, int)):
for i in range(len(self.early_exit_entropy)):
self.early_exit_entropy[i] = x
else:
self.early_exit_entropy = x
def init_highway_pooler(self, pooler):
loaded_model = pooler.state_dict()
for highway in self.highway:
for name, param in highway.pooler.state_dict().items():
param.copy_(loaded_model[name])
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
):
all_hidden_states = ()
all_attentions = ()
all_highway_exits = ()
for i, layer_module in enumerate(self.layer):
if self.output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_outputs = layer_module(
hidden_states, attention_mask, head_mask[i], encoder_hidden_states, encoder_attention_mask
)
hidden_states = layer_outputs[0]
if self.output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
current_outputs = (hidden_states,)
if self.output_hidden_states:
current_outputs = current_outputs + (all_hidden_states,)
if self.output_attentions:
current_outputs = current_outputs + (all_attentions,)
highway_exit = self.highway[i](current_outputs)
# logits, pooled_output
if not self.training:
highway_logits = highway_exit[0]
highway_entropy = entropy(highway_logits)
highway_exit = highway_exit + (highway_entropy,) # logits, hidden_states(?), entropy
all_highway_exits = all_highway_exits + (highway_exit,)
if highway_entropy < self.early_exit_entropy[i]:
new_output = (highway_logits,) + current_outputs[1:] + (all_highway_exits,)
raise HighwayException(new_output, i + 1)
else:
all_highway_exits = all_highway_exits + (highway_exit,)
# Add last layer
if self.output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
outputs = (hidden_states,)
if self.output_hidden_states:
outputs = outputs + (all_hidden_states,)
if self.output_attentions:
outputs = outputs + (all_attentions,)
outputs = outputs + (all_highway_exits,)
return outputs # last-layer hidden state, (all hidden states), (all attentions), all highway exits
@add_start_docstrings(
"The Bert Model transformer with early exiting (DeeBERT). ",
BERT_START_DOCSTRING,
)
class DeeBertModel(BertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.config = config
self.embeddings = BertEmbeddings(config)
self.encoder = DeeBertEncoder(config)
self.pooler = BertPooler(config)
self.init_weights()
def init_highway_pooler(self):
self.encoder.init_highway_pooler(self.pooler)
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""Prunes heads of the model.
heads_to_prune: dict of {layer_num: list of heads to prune in this layer}
See base class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
):
r"""
Return:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~transformers.BertConfig`) and inputs:
last_hidden_state (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
pooler_output (:obj:`torch.FloatTensor`: of shape :obj:`(batch_size, hidden_size)`):
Last layer hidden-state of the first token of the sequence (classification token)
further processed by a Linear layer and a Tanh activation function. The Linear
layer weights are trained from the next sentence prediction (classification)
objective during pre-training.
This output is usually *not* a good summary
of the semantic content of the input, you're often better with averaging or pooling
the sequence of hidden-states for the whole input sequence.
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
highway_exits (:obj:`tuple(tuple(torch.Tensor))`:
Tuple of each early exit's results (total length: number of layers)
Each tuple is again, a tuple of length 2 - the first entry is logits and the second entry is hidden states.
"""
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
if attention_mask is None:
attention_mask = torch.ones(input_shape, device=device)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(input_shape, device=device)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape, device)
# If a 2D ou 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if encoder_attention_mask.dim() == 3:
encoder_extended_attention_mask = encoder_attention_mask[:, None, :, :]
if encoder_attention_mask.dim() == 2:
encoder_extended_attention_mask = encoder_attention_mask[:, None, None, :]
encoder_extended_attention_mask = encoder_extended_attention_mask.to(
dtype=next(self.parameters()).dtype
) # fp16 compatibility
encoder_extended_attention_mask = (1.0 - encoder_extended_attention_mask) * -10000.0
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids=input_ids, position_ids=position_ids, token_type_ids=token_type_ids, inputs_embeds=inputs_embeds
)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output)
outputs = (
sequence_output,
pooled_output,
) + encoder_outputs[1:] # add hidden_states and attentions if they are here
return outputs # sequence_output, pooled_output, (hidden_states), (attentions), highway exits
class HighwayException(Exception):
def __init__(self, message, exit_layer):
self.message = message
self.exit_layer = exit_layer # start from 1!
class BertHighway(nn.Module):
"""A module to provide a shortcut
from (the output of one non-final BertLayer in BertEncoder) to (cross-entropy computation in BertForSequenceClassification)
"""
def __init__(self, config):
super().__init__()
self.pooler = BertPooler(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
def forward(self, encoder_outputs):
# Pooler
pooler_input = encoder_outputs[0]
pooler_output = self.pooler(pooler_input)
# "return" pooler_output
# BertModel
bmodel_output = (pooler_input, pooler_output) + encoder_outputs[1:]
# "return" bmodel_output
# Dropout and classification
pooled_output = bmodel_output[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
return logits, pooled_output
@add_start_docstrings(
"""Bert Model (with early exiting - DeeBERT) with a classifier on top,
also takes care of multi-layer training. """,
BERT_START_DOCSTRING,
)
class DeeBertForSequenceClassification(BertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.num_layers = config.num_hidden_layers
self.bert = DeeBertModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, self.config.num_labels)
self.init_weights()
@add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
output_layer=-1,
train_highway=False,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss.
Indices should be in :obj:`[0, ..., config.num_labels - 1]`.
If :obj:`config.num_labels == 1` a regression loss is computed (Mean-Square loss),
If :obj:`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~transformers.BertConfig`) and inputs:
loss (:obj:`torch.FloatTensor` of shape :obj:`(1,)`, `optional`, returned when :obj:`label` is provided):
Classification (or regression if config.num_labels==1) loss.
logits (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, config.num_labels)`):
Classification (or regression if config.num_labels==1) scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
highway_exits (:obj:`tuple(tuple(torch.Tensor))`:
Tuple of each early exit's results (total length: number of layers)
Each tuple is again, a tuple of length 2 - the first entry is logits and the second entry is hidden states.
"""
exit_layer = self.num_layers
try:
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
)
# sequence_output, pooled_output, (hidden_states), (attentions), highway exits
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
outputs = (logits,) + outputs[2:] # add hidden states and attention if they are here
except HighwayException as e:
outputs = e.message
exit_layer = e.exit_layer
logits = outputs[0]
if not self.training:
original_entropy = entropy(logits)
highway_entropy = []
highway_logits_all = []
if labels is not None:
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
loss = loss_fct(logits.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
# work with highway exits
highway_losses = []
for highway_exit in outputs[-1]:
highway_logits = highway_exit[0]
if not self.training:
highway_logits_all.append(highway_logits)
highway_entropy.append(highway_exit[2])
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
highway_loss = loss_fct(highway_logits.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
highway_loss = loss_fct(highway_logits.view(-1, self.num_labels), labels.view(-1))
highway_losses.append(highway_loss)
if train_highway:
outputs = (sum(highway_losses[:-1]),) + outputs
# exclude the final highway, of course
else:
outputs = (loss,) + outputs
if not self.training:
outputs = outputs + ((original_entropy, highway_entropy), exit_layer)
if output_layer >= 0:
outputs = (
(outputs[0],) + (highway_logits_all[output_layer],) + outputs[2:]
) # use the highway of the last layer
return outputs # (loss), logits, (hidden_states), (attentions), (highway_exits)
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/performer/full_script.sh
|
TOKENIZERS_PARALLELISM=true python run_mlm_performer.py --output_dir experiments --dataset_name wikipedia --dataset_config_name 20200501.en --model_name_or_path bert-large-cased --tokenizer_name bert-large-cased --do_train --overwrite_output_dir --per_device_train_batch_size 4 --learning_rate 5e-4 --warmup_steps 100 --num_train_epochs 3 --performer
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/performer/modeling_flax_performer_utils.py
|
# coding=utf-8
# Copyright 2020 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
IMPORTANT:
This code was copied from
https://github.com/google-research/google-research/blob/master/performer/fast_self_attention/fast_self_attention.py on
6/11/2020. This is very new code, so it might be prone to change soon -> make sure to check the original code and
update accordingly
Core Fast Attention Module for Flax. Implementation of the approximate fast softmax and generalized attention mechanism
leveraging structured random feature maps [RFM] techniques and low rank decomposition of the attention matrix.
"""
# pylint: disable=invalid-name, missing-function-docstring, line-too-long
import abc
import functools
from collections.abc import Iterable # pylint: disable=g-importing-member
import jax
import jax.numpy as jnp
import numpy as onp
from absl import logging
from jax import lax, random
def nonnegative_softmax_kernel_feature_creator(
data, projection_matrix, attention_dims_t, batch_dims_t, precision, is_query, normalize_data=True, eps=0.0001
):
"""
Constructs nonnegative kernel features for fast softmax attention
Args:
data: input for which features are computes
projection_matrix: random matrix used to compute features
attention_dims_t: tuple of attention dimensions
batch_dims_t: tuple of batch dimensions
precision: precision parameter
is_query: predicate indicating whether input data corresponds to queries or
keys
normalize_data: predicate indicating whether data should be normalized,
eps: numerical stabilizer
Returns:
Random features for fast softmax attention.
"""
del attention_dims_t
if normalize_data:
# We have e^{qk^T/sqrt{d}} = e^{q_norm k_norm^T}, where
# w_norm = w * data_normalizer for w in {q,k}.
data_normalizer = 1.0 / (jnp.sqrt(jnp.sqrt(data.shape[-1])))
else:
data_normalizer = 1.0
ratio = 1.0 / jnp.sqrt(projection_matrix.shape[0])
data_mod_shape = data.shape[0 : len(batch_dims_t)] + projection_matrix.shape
data_thick_random_matrix = jnp.zeros(data_mod_shape) + projection_matrix
data_dash = lax.dot_general(
data_normalizer * data,
data_thick_random_matrix,
(((data.ndim - 1,), (data_thick_random_matrix.ndim - 1,)), (batch_dims_t, batch_dims_t)),
precision=precision,
)
diag_data = jnp.square(data)
diag_data = jnp.sum(diag_data, axis=data.ndim - 1)
diag_data = (diag_data / 2.0) * data_normalizer * data_normalizer
diag_data = jnp.expand_dims(diag_data, axis=data.ndim - 1)
if is_query:
last_dims_t = (len(data_dash.shape) - 1,)
data_dash = ratio * (
jnp.exp(data_dash - diag_data - jnp.max(data_dash, axis=last_dims_t, keepdims=True)) + eps
)
else:
data_dash = ratio * (jnp.exp(data_dash - diag_data - jnp.max(data_dash)) + eps)
return data_dash
def sincos_softmax_kernel_feature_creator(
data, projection_matrix, attention_dims_t, batch_dims_t, precision, normalize_data=True
):
"""
Constructs kernel sin-cos features for fast softmax attention
Args:
data: input for which features are computes
projection_matrix: random matrix used to compute features
attention_dims_t: tuple of attention dimensions
batch_dims_t: tuple of batch dimensions
precision: precision parameter
normalize_data: predicate indicating whether data should be normalized
Returns:
Random features for fast softmax attention.
"""
if normalize_data:
# We have: exp(qk^T/sqrt{d}) = exp(|q|^2/2sqrt{d}) * exp(|k|^2/2sqrt{d}) *
# exp(-(|q*c-k*c|^2)/2), where c = 1.0 / sqrt{sqrt{d}}.
data_normalizer = 1.0 / (jnp.sqrt(jnp.sqrt(data.shape[-1])))
else:
data_normalizer = 1.0
ratio = 1.0 / jnp.sqrt(projection_matrix.shape[0])
data_mod_shape = data.shape[0 : len(batch_dims_t)] + projection_matrix.shape
data_thick_random_matrix = jnp.zeros(data_mod_shape) + projection_matrix
data_dash = lax.dot_general(
data_normalizer * data,
data_thick_random_matrix,
(((data.ndim - 1,), (data_thick_random_matrix.ndim - 1,)), (batch_dims_t, batch_dims_t)),
precision=precision,
)
data_dash_cos = ratio * jnp.cos(data_dash)
data_dash_sin = ratio * jnp.sin(data_dash)
data_dash = jnp.concatenate((data_dash_cos, data_dash_sin), axis=-1)
# Constructing D_data and data^{'}
diag_data = jnp.square(data)
diag_data = jnp.sum(diag_data, axis=data.ndim - 1)
diag_data = (diag_data / 2.0) * data_normalizer * data_normalizer
diag_data = jnp.expand_dims(diag_data, axis=data.ndim - 1)
# Additional renormalization for numerical stability
data_renormalizer = jnp.max(diag_data, attention_dims_t, keepdims=True)
diag_data -= data_renormalizer
diag_data = jnp.exp(diag_data)
data_prime = data_dash * diag_data
return data_prime
def generalized_kernel_feature_creator(
data, projection_matrix, batch_dims_t, precision, kernel_fn, kernel_epsilon, normalize_data
):
"""
Constructs kernel features for fast generalized attention
Args:
data: input for which features are computes
projection_matrix: matrix used to compute features
batch_dims_t: tuple of batch dimensions
precision: precision parameter
kernel_fn: kernel function used
kernel_epsilon: additive positive term added to every feature for numerical
stability
normalize_data: predicate indicating whether data should be normalized
Returns:
Random features for fast generalized attention.
"""
if normalize_data:
data_normalizer = 1.0 / (jnp.sqrt(jnp.sqrt(data.shape[-1])))
else:
data_normalizer = 1.0
if projection_matrix is None:
return kernel_fn(data_normalizer * data) + kernel_epsilon
else:
data_mod_shape = data.shape[0 : len(batch_dims_t)] + projection_matrix.shape
data_thick_random_matrix = jnp.zeros(data_mod_shape) + projection_matrix
data_dash = lax.dot_general(
data_normalizer * data,
data_thick_random_matrix,
(((data.ndim - 1,), (data_thick_random_matrix.ndim - 1,)), (batch_dims_t, batch_dims_t)),
precision=precision,
)
data_prime = kernel_fn(data_dash) + kernel_epsilon
return data_prime
def make_fast_softmax_attention(
qkv_dim,
renormalize_attention=True,
numerical_stabilizer=0.000001,
nb_features=256,
ortho_features=True,
ortho_scaling=0.0,
redraw_features=True,
unidirectional=False,
nonnegative_features=True,
lax_scan_unroll=1,
):
"""Construct a fast softmax attention method."""
logging.info(
"Fast softmax attention: %s features and orthogonal=%s, renormalize=%s",
nb_features,
ortho_features,
renormalize_attention,
)
if ortho_features:
matrix_creator = functools.partial(GaussianOrthogonalRandomMatrix, nb_features, qkv_dim, scaling=ortho_scaling)
else:
matrix_creator = functools.partial(GaussianUnstructuredRandomMatrix, nb_features, qkv_dim)
if nonnegative_features:
def kernel_feature_creator(
data, projection_matrix, attention_dims_t, batch_dims_t, precision, is_query, normalize_data=True
):
return nonnegative_softmax_kernel_feature_creator(
data,
projection_matrix,
attention_dims_t,
batch_dims_t,
precision,
is_query,
normalize_data,
numerical_stabilizer,
)
else:
def kernel_feature_creator(
data, projection_matrix, attention_dims_t, batch_dims_t, precision, is_query, normalize_data=True
):
del is_query
return sincos_softmax_kernel_feature_creator(
data, projection_matrix, attention_dims_t, batch_dims_t, precision, normalize_data
)
attention_fn = FastAttentionviaLowRankDecomposition(
matrix_creator,
kernel_feature_creator,
renormalize_attention=renormalize_attention,
numerical_stabilizer=numerical_stabilizer,
redraw_features=redraw_features,
unidirectional=unidirectional,
lax_scan_unroll=lax_scan_unroll,
).dot_product_attention
return attention_fn
def make_fast_generalized_attention(
qkv_dim,
renormalize_attention=True,
numerical_stabilizer=0.0,
nb_features=256,
features_type="deterministic",
kernel_fn=jax.nn.relu,
kernel_epsilon=0.001,
redraw_features=False,
unidirectional=False,
lax_scan_unroll=1,
):
"""Construct a fast generalized attention menthod."""
logging.info("Fast generalized attention.: %s features and renormalize=%s", nb_features, renormalize_attention)
if features_type == "ortho":
matrix_creator = functools.partial(GaussianOrthogonalRandomMatrix, nb_features, qkv_dim, scaling=False)
elif features_type == "iid":
matrix_creator = functools.partial(GaussianUnstructuredRandomMatrix, nb_features, qkv_dim)
elif features_type == "deterministic":
matrix_creator = None
else:
raise ValueError("Unknown feature value type")
def kernel_feature_creator(
data, projection_matrix, attention_dims_t, batch_dims_t, precision, is_query, normalize_data=False
):
del attention_dims_t
del is_query
return generalized_kernel_feature_creator(
data, projection_matrix, batch_dims_t, precision, kernel_fn, kernel_epsilon, normalize_data
)
attention_fn = FastAttentionviaLowRankDecomposition(
matrix_creator,
kernel_feature_creator,
renormalize_attention=renormalize_attention,
numerical_stabilizer=numerical_stabilizer,
redraw_features=redraw_features,
unidirectional=unidirectional,
lax_scan_unroll=lax_scan_unroll,
).dot_product_attention
return attention_fn
class RandomMatrix(object):
r"""
Abstract class providing a method for constructing 2D random arrays. Class is responsible for constructing 2D
random arrays.
"""
__metaclass__ = abc.ABCMeta
@abc.abstractmethod
def get_2d_array(self):
raise NotImplementedError("Abstract method")
class GaussianUnstructuredRandomMatrix(RandomMatrix):
def __init__(self, nb_rows, nb_columns, key):
self.nb_rows = nb_rows
self.nb_columns = nb_columns
self.key = key
def get_2d_array(self):
return random.normal(self.key, (self.nb_rows, self.nb_columns))
class GaussianOrthogonalRandomMatrix(RandomMatrix):
r"""
Class providing a method to create Gaussian orthogonal matrix. Class is responsible for constructing 2D Gaussian
orthogonal arrays.
"""
def __init__(self, nb_rows, nb_columns, key, scaling=0):
self.nb_rows = nb_rows
self.nb_columns = nb_columns
self.key = key
self.scaling = scaling
def get_2d_array(self):
nb_full_blocks = int(self.nb_rows / self.nb_columns)
block_list = []
rng = self.key
for _ in range(nb_full_blocks):
rng, rng_input = jax.random.split(rng)
unstructured_block = random.normal(rng_input, (self.nb_columns, self.nb_columns))
q, _ = jnp.linalg.qr(unstructured_block)
q = jnp.transpose(q)
block_list.append(q)
remaining_rows = self.nb_rows - nb_full_blocks * self.nb_columns
if remaining_rows > 0:
rng, rng_input = jax.random.split(rng)
unstructured_block = random.normal(rng_input, (self.nb_columns, self.nb_columns))
q, _ = jnp.linalg.qr(unstructured_block)
q = jnp.transpose(q)
block_list.append(q[0:remaining_rows])
final_matrix = jnp.vstack(block_list)
if self.scaling == 0:
multiplier = jnp.linalg.norm(random.normal(self.key, (self.nb_rows, self.nb_columns)), axis=1)
elif self.scaling == 1:
multiplier = jnp.sqrt(float(self.nb_columns)) * jnp.ones((self.nb_rows))
else:
raise ValueError("Scaling must be one of {0, 1}. Was %s" % self._scaling)
return jnp.matmul(jnp.diag(multiplier), final_matrix)
class FastAttention(object):
r"""
Abstract class providing a method for fast attention. Class is responsible for providing a method
<dot_product_attention> for fast approximate attention.
"""
__metaclass__ = abc.ABCMeta
@abc.abstractmethod
def dot_product_attention(
self,
query,
key,
value,
dtype=jnp.float32,
bias=None,
axis=None,
broadcast_dropout=True,
dropout_rng=None,
dropout_rate=0.0,
deterministic=False,
precision=None,
):
"""
Computes dot-product attention given query, key, and value. This is the core function for applying fast
approximate dot-product attention. It calculates the attention weights given query and key and combines the
values using the attention weights. This function supports multi-dimensional inputs
Args:
query: queries for calculating attention with shape of [batch_size, dim1,
dim2, ..., dimN, num_heads, mem_channels].
key: keys for calculating attention with shape of [batch_size, dim1, dim2,
..., dimN, num_heads, mem_channels].
value: values to be used in attention with shape of [batch_size, dim1,
dim2,..., dimN, num_heads, value_channels].
dtype: the dtype of the computation (default: float32)
bias: bias for the attention weights. This can be used for incorporating
autoregressive mask, padding mask, proximity bias.
axis: axises over which the attention is applied.
broadcast_dropout: bool: use a broadcasted dropout along batch dims.
dropout_rng: JAX PRNGKey: to be used for dropout.
dropout_rate: dropout rate.
deterministic: bool, deterministic or not (to apply dropout).
precision: numerical precision of the computation see `jax.lax.Precision`
for details
Returns:
Output of shape [bs, dim1, dim2, ..., dimN,, num_heads, value_channels].
"""
raise NotImplementedError("Abstract method")
def _numerator(z_slice_shape, precision, unroll=1):
def fwd(qs, ks, vs):
def body(p, qkv):
(q, k, v) = qkv
p += jnp.einsum("...m,...d->...md", k, v, precision=precision)
X_slice = jnp.einsum("...m,...md->...d", q, p, precision=precision)
return p, X_slice
init_value = jnp.zeros(z_slice_shape)
p, W = lax.scan(body, init_value, (qs, ks, vs), unroll=unroll)
return W, (p, qs, ks, vs)
def bwd(pqkv, W_ct):
def body(carry, qkv_xct):
p, p_ct = carry
q, k, v, x_ct = qkv_xct
q_ct = jnp.einsum("...d,...md->...m", x_ct, p, precision=precision)
p_ct += jnp.einsum("...d,...m->...md", x_ct, q, precision=precision)
k_ct = jnp.einsum("...md,...d->...m", p_ct, v, precision=precision)
v_ct = jnp.einsum("...md,...m->...d", p_ct, k, precision=precision)
p -= jnp.einsum("...m,...d->...md", k, v, precision=precision)
return (p, p_ct), (q_ct, k_ct, v_ct)
p, qs, ks, vs = pqkv
_, (qs_ct, ks_ct, vs_ct) = lax.scan(
body, (p, jnp.zeros_like(p)), (qs, ks, vs, W_ct), reverse=True, unroll=unroll
)
return qs_ct, ks_ct, vs_ct
@jax.custom_vjp
def _numerator_impl(qs, ks, vs):
W, _ = fwd(qs, ks, vs)
return W
_numerator_impl.defvjp(fwd, bwd)
return _numerator_impl
def _denominator(t_slice_shape, precision, unroll=1):
def fwd(qs, ks):
def body(p, qk):
q, k = qk
p += k
x = jnp.einsum("...m,...m->...", q, p, precision=precision)
return p, x
p = jnp.zeros(t_slice_shape)
p, R = lax.scan(body, p, (qs, ks), unroll=unroll)
return R, (qs, ks, p)
def bwd(qkp, R_ct):
def body(carry, qkx):
p, p_ct = carry
q, k, x_ct = qkx
q_ct = jnp.einsum("...,...m->...m", x_ct, p, precision=precision)
p_ct += jnp.einsum("...,...m->...m", x_ct, q, precision=precision)
k_ct = p_ct
p -= k
return (p, p_ct), (q_ct, k_ct)
qs, ks, p = qkp
_, (qs_ct, ks_ct) = lax.scan(body, (p, jnp.zeros_like(p)), (qs, ks, R_ct), reverse=True, unroll=unroll)
return (qs_ct, ks_ct)
@jax.custom_vjp
def _denominator_impl(qs, ks):
R, _ = fwd(qs, ks)
return R
_denominator_impl.defvjp(fwd, bwd)
return _denominator_impl
class FastAttentionviaLowRankDecomposition(FastAttention):
r"""
Class providing a method for fast attention via low rank decomposition. Class is responsible for providing a method
<dot_product_attention> for fast dot-product attention with the use of low rank decomposition (e.g. with random
feature maps).
"""
def __init__(
self,
matrix_creator,
kernel_feature_creator,
renormalize_attention,
numerical_stabilizer,
redraw_features,
unidirectional,
lax_scan_unroll=1,
): # For optimal GPU performance, set to 16.
rng = random.PRNGKey(0)
self.matrix_creator = matrix_creator
self.projection_matrix = self.draw_weights(rng)
self.kernel_feature_creator = kernel_feature_creator
self.renormalize_attention = renormalize_attention
self.numerical_stabilizer = numerical_stabilizer
self.redraw_features = redraw_features
self.unidirectional = unidirectional
self.lax_scan_unroll = lax_scan_unroll
def draw_weights(self, key):
if self.matrix_creator is None:
return None
matrixrng, _ = random.split(key)
projection_matrix = self.matrix_creator(key=matrixrng).get_2d_array()
return projection_matrix
def dot_product_attention(
self,
query,
key,
value,
dtype=jnp.float32,
bias=None,
axis=None,
broadcast_dropout=True,
dropout_rng=None,
dropout_rate=0.0,
deterministic=False,
precision=None,
):
assert key.shape[:-1] == value.shape[:-1]
assert query.shape[0:1] == key.shape[0:1] and query.shape[-1] == key.shape[-1]
if axis is None:
axis = tuple(range(1, key.ndim - 2))
if not isinstance(axis, Iterable):
axis = (axis,)
assert key.ndim == query.ndim
assert key.ndim == value.ndim
for ax in axis:
if not (query.ndim >= 3 and 1 <= ax < query.ndim - 2):
raise ValueError("Attention axis must be between the batch axis and the last-two axes.")
n = key.ndim
# Constructing projection tensor.
if self.redraw_features:
# TODO(kchoro): Get rid of the constant below.
query_seed = lax.convert_element_type(jnp.ceil(jnp.sum(query) * 10000000.0), jnp.int32)
rng = random.PRNGKey(query_seed)
self.projection_matrix = self.draw_weights(rng)
# batch_dims is <bs, <non-attention dims>, num_heads>
batch_dims = tuple(onp.delete(range(n), axis + (n - 1,)))
# q & k -> (bs, <non-attention dims>, num_heads, <attention dims>, channels)
qk_perm = batch_dims + axis + (n - 1,)
k_extra_perm = axis + batch_dims + (n - 1,)
key_extra = key.transpose(k_extra_perm)
key = key.transpose(qk_perm)
query = query.transpose(qk_perm)
# v -> (bs, <non-attention dims>, num_heads, <attention dims>, channels)
v_perm = batch_dims + axis + (n - 1,)
value = value.transpose(v_perm)
batch_dims_t = tuple(range(len(batch_dims)))
attention_dims_t = tuple(range(len(batch_dims), len(batch_dims) + len(axis)))
# Constructing tensors Q^{'} and K^{'}.
query_prime = self.kernel_feature_creator(
query, self.projection_matrix, attention_dims_t, batch_dims_t, precision, True
)
key_prime = self.kernel_feature_creator(
key, self.projection_matrix, attention_dims_t, batch_dims_t, precision, False
)
if self.unidirectional:
index = attention_dims_t[0]
z_slice_shape = key_prime.shape[0 : len(batch_dims_t)] + (key_prime.shape[-1],) + (value.shape[-1],)
numerator_fn = _numerator(z_slice_shape, precision, self.lax_scan_unroll)
W = numerator_fn(
jnp.moveaxis(query_prime, index, 0), jnp.moveaxis(key_prime, index, 0), jnp.moveaxis(value, index, 0)
)
# Constructing W = (Q^{'}(K^{'})^{T})_{masked}V
W = jnp.moveaxis(W, 0, index)
if not self.renormalize_attention:
# Unidirectional, not-normalized attention.
perm_inv = _invert_perm(qk_perm)
result = W.transpose(perm_inv)
return result
else:
# Unidirectional, normalized attention.
thick_all_ones = jnp.zeros(key.shape[0:-1]) + jnp.ones(key_extra.shape[0 : len(axis)])
index = attention_dims_t[0]
t_slice_shape = key_prime.shape[0 : len(batch_dims_t)] + (key_prime.shape[-1],)
denominator_fn = _denominator(t_slice_shape, precision, self.lax_scan_unroll)
R = denominator_fn(jnp.moveaxis(query_prime, index, 0), jnp.moveaxis(key_prime, index, 0))
R = jnp.moveaxis(R, 0, index)
else:
contract_query = tuple(range(len(batch_dims) + len(axis), len(batch_dims) + len(axis) + 1))
contract_z = tuple(range(len(batch_dims), len(batch_dims) + 1))
# Constructing Z = (K^{'})^{T}V
# Z (bs, <non-attention dims>, num_heads, channels_m, channels_v)
Z = lax.dot_general(
key_prime,
value,
((attention_dims_t, attention_dims_t), (batch_dims_t, batch_dims_t)),
precision=precision,
)
# Constructing W = Q^{'}Z = Q^{'}(K^{'})^{T}V
# q (bs, <non-attention dims>, num_heads, <attention dims>, channels_m)
# Z (bs, <non-attention dims>, num_heads, channels_m, channels_v)
# W (bs, <non-attention dims>, num_heads, <attention dims>, channels_v)
W = lax.dot_general(
query_prime, Z, ((contract_query, contract_z), (batch_dims_t, batch_dims_t)), precision=precision
)
if not self.renormalize_attention:
# Bidirectional, not-normalized attention.
perm_inv = _invert_perm(qk_perm)
result = W.transpose(perm_inv)
return result
else:
# Bidirectional, normalized attention.
thick_all_ones = jnp.zeros(key.shape[0:-1]) + jnp.ones(key_extra.shape[0 : len(axis)])
contract_key = tuple(range(len(batch_dims), len(batch_dims) + len(axis)))
contract_thick_all_ones = tuple(range(thick_all_ones.ndim - len(axis), thick_all_ones.ndim))
# Construct T = (K^{'})^{T} 1_L
# k (bs, <non-attention dims>, num_heads, <attention dims>, channels)
T = lax.dot_general(
key_prime,
thick_all_ones,
((contract_key, contract_thick_all_ones), (batch_dims_t, batch_dims_t)),
precision=precision,
)
# Construct partition function: R = Q^{'} T = Q^{'}(K^{'})^{T} 1_L
# q_p (bs, <non-attention dims>, num_heads, <attention dims>, channs_m)
# T (bs, <non-attention dims>, num_heads, channels_m)
R = lax.dot_general(
query_prime,
T,
(((query_prime.ndim - 1,), (T.ndim - 1,)), (batch_dims_t, range(0, len(T.shape) - 1))),
precision=precision,
)
R = R + 2 * self.numerical_stabilizer * (jnp.abs(R) <= self.numerical_stabilizer)
R = jnp.reciprocal(R)
R = jnp.expand_dims(R, len(R.shape))
# W (bs, <non-attention dims>, num_heads, <attention dims>, channels_v)
# R (bs, <non-attention dims>, num_heads, <attention dims>, extra_channel)
result = W * R
# back to (bs, dim1, dim2, ..., dimN, num_heads, channels)
perm_inv = _invert_perm(qk_perm)
result = result.transpose(perm_inv)
return result
def _invert_perm(perm):
perm_inv = [0] * len(perm)
for i, j in enumerate(perm):
perm_inv[j] = i
return tuple(perm_inv)
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/performer/run_mlm_performer.py
|
# coding=utf-8
# Copyright 2020 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning the library models for masked language modeling (BERT, ALBERT, RoBERTa...) with whole word masking on a
text file or a dataset.
Here is the full list of checkpoints on the hub that can be fine-tuned by this script:
https://huggingface.co/models?filter=fill-mask
"""
import logging
import os
import sys
from dataclasses import dataclass, field
# You can also adapt this script on your own masked language modeling task. Pointers for this are left as comments.
from pathlib import Path
from typing import Dict, List, Optional, Tuple
import jax
import jax.numpy as jnp
import numpy as np
from datasets import load_dataset
from flax import jax_utils
from flax.optim import Adam
from flax.training import common_utils
from flax.training.common_utils import get_metrics
from jax.nn import log_softmax
from modeling_flax_performer import FlaxPerformerForMaskedLM
from tqdm import tqdm
from transformers import (
MODEL_FOR_MASKED_LM_MAPPING,
AutoTokenizer,
BertConfig,
FlaxBertForMaskedLM,
HfArgumentParser,
PreTrainedTokenizerBase,
TensorType,
TrainingArguments,
is_tensorboard_available,
set_seed,
)
# Cache the result
has_tensorboard = is_tensorboard_available()
if has_tensorboard:
try:
from flax.metrics.tensorboard import SummaryWriter
except ImportError as ie:
has_tensorboard = False
print(f"Unable to display metrics through TensorBoard because some package are not installed: {ie}")
else:
print(
"Unable to display metrics through TensorBoard because the package is not installed: "
"Please run pip install tensorboard to enable."
)
MODEL_CONFIG_CLASSES = list(MODEL_FOR_MASKED_LM_MAPPING.keys())
MODEL_TYPES = tuple(conf.model_type for conf in MODEL_CONFIG_CLASSES)
@dataclass
class WandbArguments:
"""
Arguments for logging
"""
wandb_user_name: Optional[str] = field(
default=None,
metadata={"help": "The WandB user name for potential logging. If left None, no logging"},
)
wandb_project_name: Optional[str] = field(
default="performer-experiments",
metadata={"help": "The WandB project name for potential logging"},
)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune, or train from scratch.
"""
model_name_or_path: Optional[str] = field(
default=None,
metadata={
"help": (
"The model checkpoint for weights initialization. Don't set if you want to train a model from scratch."
)
},
)
performer: bool = field(
default=False,
metadata={"help": "Whether to use FAVOR+ attention"},
)
reinitialize: bool = field(
default=False,
metadata={"help": "Whether to use a blank model without pretraining"},
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
use_fast_tokenizer: bool = field(
default=True,
metadata={"help": "Whether to use one of the fast tokenizer (backed by the tokenizers library) or not."},
)
cache_dir: Optional[str] = field(
default=None, metadata={"help": "Where do you want to store the pretrained models downloaded from s3"}
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
dataset_name: Optional[str] = field(
default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_file: Optional[str] = field(default=None, metadata={"help": "The input training data file (a text file)."})
validation_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input evaluation data file to evaluate the perplexity on (a text file)."},
)
train_ref_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input train ref data file for whole word masking in Chinese."},
)
validation_ref_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input validation ref data file for whole word masking in Chinese."},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
validation_split_percentage: Optional[int] = field(
default=5,
metadata={
"help": "The percentage of the train set used as validation set in case there's no validation split"
},
)
max_seq_length: Optional[int] = field(
default=None,
metadata={
"help": (
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated. Default to the max input length of the model."
)
},
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
mlm_probability: float = field(
default=0.15, metadata={"help": "Ratio of tokens to mask for masked language modeling loss"}
)
pad_to_max_length: bool = field(
default=False,
metadata={
"help": (
"Whether to pad all samples to `max_seq_length`. "
"If False, will pad the samples dynamically when batching to the maximum length in the batch."
)
},
)
def __post_init__(self):
if self.dataset_name is None and self.train_file is None and self.validation_file is None:
raise ValueError("Need either a dataset name or a training/validation file.")
else:
if self.train_file is not None:
extension = self.train_file.split(".")[-1]
assert extension in ["csv", "json", "txt"], "`train_file` should be a csv, a json or a txt file."
if self.validation_file is not None:
extension = self.validation_file.split(".")[-1]
assert extension in ["csv", "json", "txt"], "`validation_file` should be a csv, a json or a txt file."
# Adapted from transformers/data/data_collator.py
# Letting here for now, let's discuss where it should live
@dataclass
class FlaxDataCollatorForLanguageModeling:
"""
Data collator used for language modeling. Inputs are dynamically padded to the maximum length of a batch if they
are not all of the same length.
Args:
tokenizer (:class:`~transformers.PreTrainedTokenizer` or :class:`~transformers.PreTrainedTokenizerFast`):
The tokenizer used for encoding the data.
mlm (:obj:`bool`, `optional`, defaults to :obj:`True`):
Whether or not to use masked language modeling. If set to :obj:`False`, the labels are the same as the
inputs with the padding tokens ignored (by setting them to -100). Otherwise, the labels are -100 for
non-masked tokens and the value to predict for the masked token.
mlm_probability (:obj:`float`, `optional`, defaults to 0.15):
The probability with which to (randomly) mask tokens in the input, when :obj:`mlm` is set to :obj:`True`.
.. note::
For best performance, this data collator should be used with a dataset having items that are dictionaries or
BatchEncoding, with the :obj:`"special_tokens_mask"` key, as returned by a
:class:`~transformers.PreTrainedTokenizer` or a :class:`~transformers.PreTrainedTokenizerFast` with the
argument :obj:`return_special_tokens_mask=True`.
"""
tokenizer: PreTrainedTokenizerBase
mlm: bool = True
mlm_probability: float = 0.15
def __post_init__(self):
if self.mlm and self.tokenizer.mask_token is None:
raise ValueError(
"This tokenizer does not have a mask token which is necessary for masked language modeling. "
"You should pass `mlm=False` to train on causal language modeling instead."
)
def __call__(self, examples: List[Dict[str, np.ndarray]], pad_to_multiple_of: int) -> Dict[str, np.ndarray]:
# Handle dict or lists with proper padding and conversion to tensor.
batch = self.tokenizer.pad(examples, pad_to_multiple_of=pad_to_multiple_of, return_tensors=TensorType.NUMPY)
# If special token mask has been preprocessed, pop it from the dict.
special_tokens_mask = batch.pop("special_tokens_mask", None)
if self.mlm:
batch["input_ids"], batch["labels"] = self.mask_tokens(
batch["input_ids"], special_tokens_mask=special_tokens_mask
)
else:
labels = batch["input_ids"].copy()
if self.tokenizer.pad_token_id is not None:
labels[labels == self.tokenizer.pad_token_id] = -100
batch["labels"] = labels
return batch
def mask_tokens(
self, inputs: np.ndarray, special_tokens_mask: Optional[np.ndarray]
) -> Tuple[jnp.ndarray, jnp.ndarray]:
"""
Prepare masked tokens inputs/labels for masked language modeling: 80% MASK, 10% random, 10% original.
"""
labels = inputs.copy()
# We sample a few tokens in each sequence for MLM training (with probability `self.mlm_probability`)
probability_matrix = np.full(labels.shape, self.mlm_probability)
special_tokens_mask = special_tokens_mask.astype("bool")
probability_matrix[special_tokens_mask] = 0.0
masked_indices = np.random.binomial(1, probability_matrix).astype("bool")
labels[~masked_indices] = -100 # We only compute loss on masked tokens
# 80% of the time, we replace masked input tokens with tokenizer.mask_token ([MASK])
indices_replaced = np.random.binomial(1, np.full(labels.shape, 0.8)).astype("bool") & masked_indices
inputs[indices_replaced] = self.tokenizer.convert_tokens_to_ids(self.tokenizer.mask_token)
# 10% of the time, we replace masked input tokens with random word
indices_random = np.random.binomial(1, np.full(labels.shape, 0.5)).astype("bool")
indices_random &= masked_indices & ~indices_replaced
random_words = np.random.randint(self.tokenizer.vocab_size, size=labels.shape, dtype="i4")
inputs[indices_random] = random_words[indices_random]
# The rest of the time (10% of the time) we keep the masked input tokens unchanged
return inputs, labels
def create_learning_rate_scheduler(
factors="constant * linear_warmup * rsqrt_decay",
base_learning_rate=0.5,
warmup_steps=1000,
decay_factor=0.5,
steps_per_decay=20000,
steps_per_cycle=100000,
):
"""Creates learning rate schedule.
Interprets factors in the factors string which can consist of:
* constant: interpreted as the constant value,
* linear_warmup: interpreted as linear warmup until warmup_steps,
* rsqrt_decay: divide by square root of max(step, warmup_steps)
* rsqrt_normalized_decay: divide by square root of max(step/warmup_steps, 1)
* decay_every: Every k steps decay the learning rate by decay_factor.
* cosine_decay: Cyclic cosine decay, uses steps_per_cycle parameter.
Args:
factors: string, factors separated by "*" that defines the schedule.
base_learning_rate: float, the starting constant for the lr schedule.
warmup_steps: int, how many steps to warm up for in the warmup schedule.
decay_factor: float, the amount to decay the learning rate by.
steps_per_decay: int, how often to decay the learning rate.
steps_per_cycle: int, steps per cycle when using cosine decay.
Returns:
a function learning_rate(step): float -> {"learning_rate": float}, the
step-dependent lr.
"""
factors = [n.strip() for n in factors.split("*")]
def step_fn(step):
"""Step to learning rate function."""
ret = 1.0
for name in factors:
if name == "constant":
ret *= base_learning_rate
elif name == "linear_warmup":
ret *= jnp.minimum(1.0, step / warmup_steps)
elif name == "rsqrt_decay":
ret /= jnp.sqrt(jnp.maximum(step, warmup_steps))
elif name == "rsqrt_normalized_decay":
ret *= jnp.sqrt(warmup_steps)
ret /= jnp.sqrt(jnp.maximum(step, warmup_steps))
elif name == "decay_every":
ret *= decay_factor ** (step // steps_per_decay)
elif name == "cosine_decay":
progress = jnp.maximum(0.0, (step - warmup_steps) / float(steps_per_cycle))
ret *= jnp.maximum(0.0, 0.5 * (1.0 + jnp.cos(jnp.pi * (progress % 1.0))))
else:
raise ValueError("Unknown factor %s." % name)
return jnp.asarray(ret, dtype=jnp.float32)
return step_fn
def compute_metrics(logits, labels, weights, label_smoothing=0.0):
"""Compute summary metrics."""
loss, normalizer = cross_entropy(logits, labels, weights, label_smoothing)
acc, _ = accuracy(logits, labels, weights)
metrics = {"loss": loss, "accuracy": acc, "normalizer": normalizer}
metrics = jax.lax.psum(metrics, axis_name="batch")
return metrics
def accuracy(logits, targets, weights=None):
"""Compute weighted accuracy for log probs and targets.
Args:
logits: [batch, length, num_classes] float array.
targets: categorical targets [batch, length] int array.
weights: None or array of shape [batch, length]
Returns:
Tuple of scalar loss and batch normalizing factor.
"""
if logits.ndim != targets.ndim + 1:
raise ValueError(
"Incorrect shapes. Got shape %s logits and %s targets" % (str(logits.shape), str(targets.shape))
)
loss = jnp.equal(jnp.argmax(logits, axis=-1), targets)
loss *= weights
return loss.sum(), weights.sum()
def cross_entropy(logits, targets, weights=None, label_smoothing=0.0):
"""Compute cross entropy and entropy for log probs and targets.
Args:
logits: [batch, length, num_classes] float array.
targets: categorical targets [batch, length] int array.
weights: None or array of shape [batch, length]
label_smoothing: label smoothing constant, used to determine the on and off values.
Returns:
Tuple of scalar loss and batch normalizing factor.
"""
if logits.ndim != targets.ndim + 1:
raise ValueError(
"Incorrect shapes. Got shape %s logits and %s targets" % (str(logits.shape), str(targets.shape))
)
vocab_size = logits.shape[-1]
confidence = 1.0 - label_smoothing
low_confidence = (1.0 - confidence) / (vocab_size - 1)
normalizing_constant = -(
confidence * jnp.log(confidence) + (vocab_size - 1) * low_confidence * jnp.log(low_confidence + 1e-20)
)
soft_targets = common_utils.onehot(targets, vocab_size, on_value=confidence, off_value=low_confidence)
loss = -jnp.sum(soft_targets * log_softmax(logits), axis=-1)
loss = loss - normalizing_constant
if weights is not None:
loss = loss * weights
normalizing_factor = weights.sum()
else:
normalizing_factor = np.prod(targets.shape)
return loss.sum(), normalizing_factor
def training_step(optimizer, batch, dropout_rng):
dropout_rng, new_dropout_rng = jax.random.split(dropout_rng)
def loss_fn(params):
targets = batch.pop("labels")
# Hide away tokens which doesn't participate in the optimization
token_mask = jnp.where(targets > 0, 1.0, 0.0)
logits = model(**batch, params=params, dropout_rng=dropout_rng, train=True)[0]
loss, weight_sum = cross_entropy(logits, targets, token_mask)
return loss / weight_sum
step = optimizer.state.step
lr = lr_scheduler_fn(step)
grad_fn = jax.value_and_grad(loss_fn)
loss, grad = grad_fn(optimizer.target)
grad = jax.lax.pmean(grad, "batch")
optimizer = optimizer.apply_gradient(grad, learning_rate=lr)
return loss, optimizer, new_dropout_rng
def eval_step(params, batch):
"""
Calculate evaluation metrics on a batch.
"""
targets = batch.pop("labels")
# Hide away tokens which doesn't participate in the optimization
token_mask = jnp.where(targets > 0, 1.0, 0.0)
logits = model(**batch, params=params, train=False)[0]
return compute_metrics(logits, targets, token_mask)
def generate_batch_splits(samples_idx: np.ndarray, batch_size: int) -> np.ndarray:
nb_samples = len(samples_idx)
samples_to_remove = nb_samples % batch_size
if samples_to_remove != 0:
samples_idx = samples_idx[:-samples_to_remove]
sections_split = nb_samples // batch_size
batch_idx = np.split(samples_idx, sections_split)
return batch_idx
if __name__ == "__main__":
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments, WandbArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args, wandb_args = parser.parse_json_file(
json_file=os.path.abspath(sys.argv[1])
)
else:
model_args, data_args, training_args, wandb_args = parser.parse_args_into_dataclasses()
if (
os.path.exists(training_args.output_dir)
and os.listdir(training_args.output_dir)
and training_args.do_train
and not training_args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. "
"Use --overwrite_output_dir to overcome."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
level="NOTSET",
datefmt="[%X]",
)
# Log on each process the small summary:
logger = logging.getLogger(__name__)
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}"
+ f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
# Set the verbosity to info of the Transformers logger (on main process only):
logger.info("Training/evaluation parameters %s", training_args)
# Set seed before initializing model.
set_seed(training_args.seed)
# Get the datasets: you can either provide your own CSV/JSON/TXT training and evaluation files (see below)
# or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/
# (the dataset will be downloaded automatically from the datasets Hub).
#
# For CSV/JSON files, this script will use the column called 'text' or the first column if no column called
# 'text' is found. You can easily tweak this behavior (see below).
#
# In distributed training, the load_dataset function guarantees that only one local process can concurrently
# download the dataset.
if data_args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
datasets = load_dataset(data_args.dataset_name, data_args.dataset_config_name)
if "validation" not in datasets.keys():
datasets["validation"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[:{data_args.validation_split_percentage}%]",
)
datasets["train"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[{data_args.validation_split_percentage}%:]",
)
else:
data_files = {}
if data_args.train_file is not None:
data_files["train"] = data_args.train_file
if data_args.validation_file is not None:
data_files["validation"] = data_args.validation_file
extension = data_args.train_file.split(".")[-1]
if extension == "txt":
extension = "text"
datasets = load_dataset(extension, data_files=data_files)
# See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
# https://huggingface.co/docs/datasets/loading_datasets.
# Load pretrained model and tokenizer
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
rng = jax.random.PRNGKey(training_args.seed)
dropout_rngs = jax.random.split(rng, jax.local_device_count())
config = BertConfig.from_pretrained(model_args.model_name_or_path, cache_dir=model_args.cache_dir)
lm_class = FlaxPerformerForMaskedLM if model_args.performer else FlaxBertForMaskedLM
if model_args.reinitialize:
model = lm_class(config=BertConfig.from_pretrained(model_args.model_name_or_path))
else:
model = lm_class.from_pretrained(
model_args.model_name_or_path,
dtype=jnp.float32,
input_shape=(training_args.train_batch_size, config.max_position_embeddings),
seed=training_args.seed,
dropout_rate=0.1,
)
if model_args.tokenizer_name:
tokenizer = AutoTokenizer.from_pretrained(
model_args.tokenizer_name, cache_dir=model_args.cache_dir, use_fast=model_args.use_fast_tokenizer
)
elif model_args.model_name_or_path:
tokenizer = AutoTokenizer.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, use_fast=model_args.use_fast_tokenizer
)
else:
raise ValueError(
"You are instantiating a new tokenizer from scratch. This is not supported by this script. "
"You can do it from another script, save it, and load it from here, using --tokenizer_name."
)
# Preprocessing the datasets.
# First we tokenize all the texts.
if training_args.do_train:
column_names = datasets["train"].column_names
else:
column_names = datasets["validation"].column_names
text_column_name = "text" if "text" in column_names else column_names[0]
padding = "max_length" if data_args.pad_to_max_length else False
def tokenize_function(examples):
# Remove empty lines
examples = [line for line in examples if len(line) > 0 and not line.isspace()]
return tokenizer(
examples,
return_special_tokens_mask=True,
padding=padding,
truncation=True,
max_length=data_args.max_seq_length,
)
tokenized_datasets = datasets.map(
tokenize_function,
input_columns=[text_column_name],
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
)
# Enable tensorboard only on the master node
if has_tensorboard and jax.host_id() == 0:
summary_writer = SummaryWriter(log_dir=Path(training_args.output_dir).joinpath("logs").as_posix())
# Data collator
# This one will take care of randomly masking the tokens.
data_collator = FlaxDataCollatorForLanguageModeling(tokenizer=tokenizer, mlm_probability=data_args.mlm_probability)
# Setup optimizer
optimizer = Adam(
learning_rate=training_args.learning_rate,
weight_decay=training_args.weight_decay,
beta1=training_args.adam_beta1,
beta2=training_args.adam_beta2,
).create(model.params)
# Create learning rate scheduler
lr_scheduler_fn = create_learning_rate_scheduler(
base_learning_rate=training_args.learning_rate, warmup_steps=max(training_args.warmup_steps, 1)
)
# Create parallel version of the training and evaluation steps
p_training_step = jax.pmap(training_step, "batch", donate_argnums=(0,))
p_eval_step = jax.pmap(eval_step, "batch", donate_argnums=(0,))
# Replicate the optimizer on each device
optimizer = jax_utils.replicate(optimizer)
# Store some constant
nb_epochs = int(training_args.num_train_epochs)
batch_size = int(training_args.train_batch_size)
eval_batch_size = int(training_args.eval_batch_size)
if wandb_args.wandb_user_name is not None:
import wandb
wandb.init(project=wandb_args.wandb_project_name, entity=wandb_args.wandb_user_name)
epochs = tqdm(range(nb_epochs), desc=f"Epoch ... (1/{nb_epochs})", position=0)
for epoch in epochs:
# ======================== Training ================================
# Create sampling rng
rng, training_rng, eval_rng = jax.random.split(rng, 3)
# Generate an epoch by shuffling sampling indices from the train dataset
nb_training_samples = len(tokenized_datasets["train"])
# Avoid using jax.numpy here in case of TPU training
training_samples_idx = np.random.permutation(np.arange(nb_training_samples))
training_batch_idx = generate_batch_splits(training_samples_idx, batch_size)
# Gather the indexes for creating the batch and do a training step
for batch_idx in tqdm(training_batch_idx, desc="Training...", position=1):
samples = [tokenized_datasets["train"][int(idx)] for idx in batch_idx]
model_inputs = data_collator(samples, pad_to_multiple_of=16)
# Model forward
model_inputs = common_utils.shard(model_inputs.data)
loss, optimizer, dropout_rngs = p_training_step(optimizer, model_inputs, dropout_rngs)
if wandb_args.wandb_user_name is not None:
wandb.log({"Training loss": np.array(loss).mean()})
epochs.write(f"Loss: {loss}")
# ======================== Evaluating ==============================
nb_eval_samples = len(tokenized_datasets["validation"])
# Avoid using jax.numpy here in case of TPU training
eval_samples_idx = np.arange(nb_eval_samples)
eval_batch_idx = generate_batch_splits(eval_samples_idx, eval_batch_size)
eval_metrics = []
for i, batch_idx in enumerate(tqdm(eval_batch_idx, desc="Evaluating ...", position=2)):
samples = [tokenized_datasets["validation"][int(idx)] for idx in batch_idx]
model_inputs = data_collator(samples, pad_to_multiple_of=16)
# Model forward
model_inputs = common_utils.shard(model_inputs.data)
metrics = p_eval_step(optimizer.target, model_inputs)
eval_metrics.append(metrics)
eval_metrics_np = get_metrics(eval_metrics)
eval_metrics_np = jax.tree_util.tree_map(jnp.sum, eval_metrics_np)
eval_normalizer = eval_metrics_np.pop("normalizer")
eval_summary = jax.tree_util.tree_map(lambda x: x / eval_normalizer, eval_metrics_np)
# Update progress bar
epochs.desc = (
f"Epoch... ({epoch + 1}/{nb_epochs} | Loss: {eval_summary['loss']}, Acc: {eval_summary['accuracy']})"
)
if wandb_args.wandb_user_name is not None:
wandb.log({"Eval loss": np.array(eval_summary["loss"]).mean()})
# Save metrics
if has_tensorboard and jax.host_id() == 0:
for name, value in eval_summary.items():
summary_writer.scalar(name, value, epoch)
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hf_public_repos/transformers/examples/research_projects/performer/sanity_script.sh
|
TOKENIZERS_PARALLELISM=true python run_mlm_performer.py --output_dir experiments --dataset_name wikipedia --dataset_config_name 20200501.simple --model_name_or_path bert-base-cased --tokenizer_name bert-base-cased --do_train --overwrite_output_dir --per_device_train_batch_size 4 --learning_rate 5e-4 --warmup_steps 100 --num_train_epochs 3 --performer
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hf_public_repos/transformers/examples/research_projects
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hf_public_repos/transformers/examples/research_projects/performer/README.md
|
# Performer fine-tuning
Example authors: @TevenLeScao, @Patrickvonplaten
Paper authors: Krzysztof Choromanski, Valerii Likhosherstov, David Dohan, Xingyou Song, Andreea Gane, Tamas Sarlos, Peter Hawkins, Jared Davis, Afroz Mohiuddin, Lukasz Kaiser, David Belanger, Lucy Colwell, Adrian Weller
## Requirements
`datasets`, `flax` and `jax`. `wandb` integration is built-in if you want to use it.
## Examples
`sanity_script.sh` will launch performer fine-tuning from the bert-base-cased checkpoint on the Simple Wikipedia dataset (a small, easy-language English Wikipedia) from `datasets`.
`full_script.sh` will launch performer fine-tuning from the bert-large-cased checkpoint on the English Wikipedia dataset from `datasets`.
Here are a few key arguments:
- Remove the `--performer` argument to use a standard Bert model.
- Add `--reinitialize` to start from a blank model rather than a Bert checkpoint.
- You may change the Bert size by passing a different [checkpoint](https://huggingface.co/transformers/pretrained_models.html) to the `--model_name_or_path` argument.
- Passing your user name to the `--wandb_user_name` argument will trigger weights and biases logging.
- You can choose a dataset with `--dataset_name` and `--dataset_config`. Our [viewer](https://huggingface.co/datasets/viewer/) will help you find what you need.
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hf_public_repos/transformers/examples/research_projects/performer/modeling_flax_performer.py
|
# coding=utf-8
# Copyright 2018 The Google Flax Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Callable, Dict, Tuple
import flax.linen as nn
import jax
import jax.numpy as jnp
import numpy as np
from jax.random import PRNGKey
from modeling_flax_performer_utils import make_fast_softmax_attention
from transformers.file_utils import add_start_docstrings
from transformers.modeling_flax_utils import ACT2FN
from transformers.models.bert.configuration_bert import BertConfig
from transformers.models.bert.modeling_flax_bert import FlaxBertOnlyMLMHead, FlaxBertPreTrainedModel
from transformers.utils import logging
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "BertConfig"
_TOKENIZER_FOR_DOC = "BertTokenizer"
BERT_START_DOCSTRING = r"""
This model inherits from :class:`~transformers.PreTrainedModel`. Check the superclass documentation for the generic
methods the library implements for all its model (such as downloading or saving, resizing the input embeddings,
pruning heads etc.)
This model is also a PyTorch `torch.nn.Module <https://pytorch.org/docs/stable/nn.html#torch.nn.Module>`__
subclass. Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to
general usage and behavior.
Parameters:
config (:class:`~transformers.BertConfig`): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the :meth:`~transformers.PreTrainedModel.from_pretrained` method to load the model
weights.
"""
BERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (:obj:`torch.LongTensor` of shape :obj:`({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using :class:`~transformers.BertTokenizer`. See
:meth:`transformers.PreTrainedTokenizer.encode` and :meth:`transformers.PreTrainedTokenizer.__call__` for
details.
`What are input IDs? <../glossary.html#input-ids>`__
attention_mask (:obj:`torch.FloatTensor` of shape :obj:`({0})`, `optional`):
Mask to avoid performing attention on padding token indices. Mask values selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
`What are attention masks? <../glossary.html#attention-mask>`__
token_type_ids (:obj:`torch.LongTensor` of shape :obj:`({0})`, `optional`):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in ``[0,
1]``:
- 0 corresponds to a `sentence A` token,
- 1 corresponds to a `sentence B` token.
`What are token type IDs? <../glossary.html#token-type-ids>`_
position_ids (:obj:`torch.LongTensor` of shape :obj:`({0})`, `optional`):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range ``[0,
config.max_position_embeddings - 1]``.
`What are position IDs? <../glossary.html#position-ids>`_
head_mask (:obj:`torch.FloatTensor` of shape :obj:`(num_heads,)` or :obj:`(num_layers, num_heads)`, `optional`):
Mask to nullify selected heads of the self-attention modules. Mask values selected in ``[0, 1]``:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (:obj:`torch.FloatTensor` of shape :obj:`({0}, hidden_size)`, `optional`):
Optionally, instead of passing :obj:`input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert :obj:`input_ids` indices into associated
vectors than the model's internal embedding lookup matrix.
output_attentions (:obj:`bool`, `optional`):
Whether or not to return the attentions tensors of all attention layers. See ``attentions`` under returned
tensors for more detail.
output_hidden_states (:obj:`bool`, `optional`):
Whether or not to return the hidden states of all layers. See ``hidden_states`` under returned tensors for
more detail.
return_dict (:obj:`bool`, `optional`):
Whether or not to return a :class:`~transformers.file_utils.ModelOutput` instead of a plain tuple.
"""
class FlaxPerformerLayerNorm(nn.Module):
"""
Layer normalization (https://arxiv.org/abs/1607.06450). Operates on the last axis of the input data.
"""
epsilon: float = 1e-6
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
bias: bool = True # If True, bias (beta) is added.
scale: bool = True # If True, multiply by scale (gamma). When the next layer is linear
# (also e.g. nn.relu), this can be disabled since the scaling will be
# done by the next layer.
bias_init: jnp.ndarray = nn.initializers.zeros
scale_init: jnp.ndarray = nn.initializers.ones
@nn.compact
def __call__(self, x):
"""
Applies layer normalization on the input. It normalizes the activations of the layer for each given example in
a batch independently, rather than across a batch like Batch Normalization. i.e. applies a transformation that
maintains the mean activation within each example close to 0 and the activation standard deviation close to 1
Args:
x: the inputs
Returns:
Normalized inputs (the same shape as inputs).
"""
features = x.shape[-1]
mean = jnp.mean(x, axis=-1, keepdims=True)
mean2 = jnp.mean(jax.lax.square(x), axis=-1, keepdims=True)
var = mean2 - jax.lax.square(mean)
mul = jax.lax.rsqrt(var + self.epsilon)
if self.scale:
mul = mul * jnp.asarray(self.param("gamma", self.scale_init, (features,)), self.dtype)
y = (x - mean) * mul
if self.bias:
y = y + jnp.asarray(self.param("beta", self.bias_init, (features,)), self.dtype)
return y
class FlaxPerformerEmbedding(nn.Module):
"""
Specify a new class for doing the embedding stuff as Flax's one use 'embedding' for the parameter name and PyTorch
use 'weight'
"""
vocab_size: int
hidden_size: int
emb_init: Callable[..., np.ndarray] = nn.initializers.normal(stddev=0.1)
@nn.compact
def __call__(self, inputs):
embedding = self.param("weight", self.emb_init, (self.vocab_size, self.hidden_size))
return jnp.take(embedding, inputs, axis=0)
class FlaxPerformerEmbeddings(nn.Module):
"""Construct the embeddings from word, position and token_type embeddings."""
vocab_size: int
hidden_size: int
type_vocab_size: int
max_length: int
@nn.compact
def __call__(self, input_ids, token_type_ids, position_ids, attention_mask):
# Embed
w_emb = FlaxPerformerEmbedding(self.vocab_size, self.hidden_size, name="word_embeddings")(
jnp.atleast_2d(input_ids.astype("i4"))
)
p_emb = FlaxPerformerEmbedding(self.max_length, self.hidden_size, name="position_embeddings")(
jnp.atleast_2d(position_ids.astype("i4"))
)
t_emb = FlaxPerformerEmbedding(self.type_vocab_size, self.hidden_size, name="token_type_embeddings")(
jnp.atleast_2d(token_type_ids.astype("i4"))
)
# Sum all embeddings
summed_emb = w_emb + jnp.broadcast_to(p_emb, w_emb.shape) + t_emb
# Layer Norm
layer_norm = FlaxPerformerLayerNorm(name="layer_norm")(summed_emb)
return layer_norm
class FlaxPerformerAttention(nn.Module):
num_heads: int
head_size: int
@nn.compact
def __call__(self, hidden_state, attention_mask):
single_head_dim = self.head_size // self.num_heads
fast_softmax_attention = make_fast_softmax_attention(qkv_dim=single_head_dim)
self_att = nn.attention.SelfAttention(
num_heads=self.num_heads, qkv_features=self.head_size, name="self", attention_fn=fast_softmax_attention
)(hidden_state, attention_mask)
layer_norm = FlaxPerformerLayerNorm(name="layer_norm")(self_att + hidden_state)
return layer_norm
class FlaxPerformerIntermediate(nn.Module):
output_size: int
hidden_act: str = "gelu"
@nn.compact
def __call__(self, hidden_state):
# TODO: Add ACT2FN reference to change activation function
dense = nn.Dense(features=self.output_size, name="dense")(hidden_state)
return ACT2FN[self.hidden_act](dense)
class FlaxPerformerOutput(nn.Module):
@nn.compact
def __call__(self, intermediate_output, attention_output):
hidden_state = nn.Dense(attention_output.shape[-1], name="dense")(intermediate_output)
hidden_state = FlaxPerformerLayerNorm(name="layer_norm")(hidden_state + attention_output)
return hidden_state
class FlaxPerformerLayer(nn.Module):
num_heads: int
head_size: int
intermediate_size: int
hidden_act: str = "gelu"
@nn.compact
def __call__(self, hidden_state, attention_mask):
attention = FlaxPerformerAttention(self.num_heads, self.head_size, name="attention")(
hidden_state, attention_mask
)
intermediate = FlaxPerformerIntermediate(
self.intermediate_size, name="intermediate", hidden_act=self.hidden_act
)(attention)
output = FlaxPerformerOutput(name="output")(intermediate, attention)
return output
class FlaxPerformerLayerCollection(nn.Module):
"""
Stores N BertLayer(s)
"""
num_layers: int
num_heads: int
head_size: int
intermediate_size: int
hidden_act: str = "gelu"
@nn.compact
def __call__(self, inputs, attention_mask):
assert self.num_layers > 0, f"num_layers should be >= 1, got ({self.num_layers})"
# Initialize input / output
input_i = inputs
# Forward over all encoders
for i in range(self.num_layers):
layer = FlaxPerformerLayer(
self.num_heads, self.head_size, self.intermediate_size, hidden_act=self.hidden_act, name=f"{i}"
)
input_i = layer(input_i, attention_mask)
return input_i
class FlaxPerformerEncoder(nn.Module):
num_layers: int
num_heads: int
head_size: int
intermediate_size: int
hidden_act: str = "gelu"
@nn.compact
def __call__(self, hidden_state, attention_mask):
layer = FlaxPerformerLayerCollection(
self.num_layers,
self.num_heads,
self.head_size,
self.intermediate_size,
name="layer",
hidden_act=self.hidden_act,
)(hidden_state, attention_mask)
return layer
class FlaxPerformerPooler(nn.Module):
@nn.compact
def __call__(self, hidden_state):
cls_token = hidden_state[:, 0]
out = nn.Dense(hidden_state.shape[-1], name="dense")(cls_token)
return jax.lax.tanh(out)
class FlaxPerformerModule(nn.Module):
vocab_size: int
hidden_size: int
type_vocab_size: int
max_length: int
num_encoder_layers: int
num_heads: int
head_size: int
intermediate_size: int
hidden_act: str = "gelu"
add_pooling_layer: bool = True
@nn.compact
def __call__(self, input_ids, token_type_ids, position_ids, attention_mask):
# Embedding
embeddings = FlaxPerformerEmbeddings(
self.vocab_size, self.hidden_size, self.type_vocab_size, self.max_length, name="embeddings"
)(input_ids, token_type_ids, position_ids, attention_mask)
# N stacked encoding layers
encoder = FlaxPerformerEncoder(
self.num_encoder_layers,
self.num_heads,
self.head_size,
self.intermediate_size,
hidden_act=self.hidden_act,
name="encoder",
)(embeddings, attention_mask)
if not self.add_pooling_layer:
return encoder
pooled = FlaxPerformerPooler(name="pooler")(encoder)
return encoder, pooled
@add_start_docstrings(
"The bare Bert Model transformer outputting raw hidden-states without any specific head on top.",
BERT_START_DOCSTRING,
)
class FlaxPerformerModel(FlaxBertPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in `Attention is
all you need <https://arxiv.org/abs/1706.03762>`__ by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
"""
model_class = FlaxPerformerModule
config_class = BertConfig
base_model_prefix = "bert"
@staticmethod
def convert_from_pytorch(pt_state: Dict, config: BertConfig) -> Dict:
jax_state = dict(pt_state)
# Need to change some parameters name to match Flax names so that we don't have to fork any layer
for key, tensor in pt_state.items():
# Key parts
key_parts = set(key.split("."))
# Every dense layer has "kernel" parameters instead of "weight"
if "dense.weight" in key:
del jax_state[key]
key = key.replace("weight", "kernel")
jax_state[key] = tensor
# SelfAttention needs also to replace "weight" by "kernel"
if {"query", "key", "value"} & key_parts:
# Flax SelfAttention decomposes the heads (num_head, size // num_heads)
if "bias" in key:
jax_state[key] = tensor.reshape((config.num_attention_heads, -1))
elif "weight":
del jax_state[key]
key = key.replace("weight", "kernel")
tensor = tensor.reshape((config.num_attention_heads, -1, config.hidden_size)).transpose((2, 0, 1))
jax_state[key] = tensor
# SelfAttention output is not a separate layer, remove one nesting
if "attention.output.dense" in key:
del jax_state[key]
key = key.replace("attention.output.dense", "attention.self.out")
jax_state[key] = tensor
# SelfAttention output is not a separate layer, remove nesting on layer norm
if "attention.output.LayerNorm" in key:
del jax_state[key]
key = key.replace("attention.output.LayerNorm", "attention.LayerNorm")
jax_state[key] = tensor
# There are some transposed parameters w.r.t their PyTorch counterpart
if "intermediate.dense.kernel" in key or "output.dense.kernel" in key:
jax_state[key] = tensor.T
# Self Attention output projection needs to be transposed
if "out.kernel" in key:
jax_state[key] = tensor.reshape((config.hidden_size, config.num_attention_heads, -1)).transpose(
1, 2, 0
)
# Pooler needs to transpose its kernel
if "pooler.dense.kernel" in key:
jax_state[key] = tensor.T
# Handle LayerNorm conversion
if "LayerNorm" in key:
del jax_state[key]
# Replace LayerNorm by layer_norm
new_key = key.replace("LayerNorm", "layer_norm")
if "weight" in key:
new_key = new_key.replace("weight", "gamma")
elif "bias" in key:
new_key = new_key.replace("bias", "beta")
jax_state[new_key] = tensor
return jax_state
def __init__(
self, config: BertConfig, input_shape: Tuple = (1, 1), seed: int = 0, dtype: jnp.dtype = jnp.float32, **kwargs
):
module = FlaxPerformerModule(
vocab_size=config.vocab_size,
hidden_size=config.hidden_size,
type_vocab_size=config.type_vocab_size,
max_length=config.max_position_embeddings,
num_encoder_layers=config.num_hidden_layers,
num_heads=config.num_attention_heads,
head_size=config.hidden_size,
intermediate_size=config.intermediate_size,
dropout_rate=config.hidden_dropout_prob,
hidden_act=config.hidden_act,
)
super().__init__(config, module, input_shape=input_shape, seed=seed, dtype=dtype)
@property
def module(self) -> nn.Module:
return self._module
def __call__(
self, input_ids, token_type_ids=None, position_ids=None, dropout_rng: PRNGKey = None, attention_mask=None
):
input_ids, attention_mask, token_type_ids, position_ids = self._check_inputs(
input_ids, attention_mask, token_type_ids, position_ids
)
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
return self.module.apply(
{"params": self.params},
jnp.array(input_ids, dtype="i4"),
jnp.array(token_type_ids, dtype="i4"),
jnp.array(position_ids, dtype="i4"),
jnp.array(attention_mask, dtype="i4"),
rng=rngs,
)
class FlaxPerformerForMaskedLM(FlaxBertPreTrainedModel):
def __init__(
self, config: BertConfig, input_shape: Tuple = (1, 1), seed: int = 0, dtype: jnp.dtype = jnp.float32, **kwargs
):
module = FlaxPerformerForMaskedLMModule(
vocab_size=config.vocab_size,
type_vocab_size=config.type_vocab_size,
hidden_size=config.hidden_size,
intermediate_size=config.intermediate_size,
head_size=config.hidden_size,
num_heads=config.num_attention_heads,
num_encoder_layers=config.num_hidden_layers,
max_length=config.max_position_embeddings,
hidden_act=config.hidden_act,
**kwargs,
)
super().__init__(config, module, input_shape=input_shape, seed=seed, dtype=dtype)
def __call__(
self,
input_ids,
attention_mask=None,
token_type_ids=None,
position_ids=None,
params: dict = None,
train: bool = False,
dropout_rng: PRNGKey = None,
):
input_ids, attention_mask, token_type_ids, position_ids = self._check_inputs(
input_ids, attention_mask, token_type_ids, position_ids
)
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
return self.module.apply(
{"params": params or self.params},
jnp.array(input_ids, dtype="i4"),
jnp.array(attention_mask, dtype="i4"),
jnp.array(token_type_ids, dtype="i4"),
jnp.array(position_ids, dtype="i4"),
not train,
rngs=rngs,
)
class FlaxPerformerForMaskedLMModule(nn.Module):
vocab_size: int
hidden_size: int
intermediate_size: int
head_size: int
num_heads: int
num_encoder_layers: int
type_vocab_size: int
max_length: int
hidden_act: str
dropout_rate: float = 0.0
dtype: jnp.dtype = jnp.float32
@nn.compact
def __call__(
self, input_ids, attention_mask=None, token_type_ids=None, position_ids=None, deterministic: bool = True
):
# Model
encoder = FlaxPerformerModule(
vocab_size=self.vocab_size,
hidden_size=self.hidden_size,
type_vocab_size=self.type_vocab_size,
max_length=self.max_length,
num_encoder_layers=self.num_encoder_layers,
num_heads=self.num_heads,
head_size=self.hidden_size,
intermediate_size=self.intermediate_size,
hidden_act=self.hidden_act,
add_pooling_layer=False,
name="bert",
)(input_ids, attention_mask, token_type_ids, position_ids)
# Compute the prediction scores
encoder = nn.Dropout(rate=self.dropout_rate)(encoder, deterministic=deterministic)
logits = FlaxBertOnlyMLMHead(
vocab_size=self.vocab_size, hidden_act=self.hidden_act, name="cls", dtype=self.dtype
)(encoder)
return (logits,)
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hf_public_repos/transformers/examples/research_projects/codeparrot/README.md
|
# CodeParrot 🦜
<p align="center">
<img src="https://huggingface.co/datasets/lvwerra/repo-images/raw/main/code-highlighting-streamlit.png" alt="drawing" width="350"/>
</p>
## What is this about?
This is an open-source effort to train and evaluate code generation models. CodeParrot 🦜 is a GPT-2 model trained from scratch on Python code. The highlights of this project are:
- initialize and train a GPT-2 language model from scratch for code generation
- train a custom tokenizer adapted for Python code
- clean and deduplicate a large (>100GB) dataset with `datasets`
- train with `accelerate` on multiple GPUs using data parallelism and mixed precision
- continuously push checkpoints to the hub with `huggingface_hub`
- stream the dataset with `datasets` during training to avoid disk bottlenecks
- apply the `code_eval` metric in `datasets` to evaluate on [OpenAI's _HumanEval_ benchmark](https://huggingface.co/datasets/openai_humaneval)
- showcase examples for downstream tasks with code models in [examples](https://github.com/huggingface/transformers/tree/main/examples/research_projects/codeparrot/examples) folder:
- Algorithmic complexity prediction
- Code generation from english text
- Code explanation
## Installation
To install the dependencies simply run the following command:
```bash
pip install -r requirements.txt
```
To reproduce the results you can follow the scripts in the following sections. Note that we don't always show all possible arguments to the scripts. To get the full list of arguments with descriptions you can run the following command on any script:
```bash
python scripts/some_script.py --help
```
Before you run any of the scripts make sure you are logged in and can push to the hub:
```bash
huggingface-cli login
```
Additionally, sure you have git-lfs installed. You can find instructions for how to install it [here](https://git-lfs.github.com/).
## Dataset
The source of the dataset is the GitHub dump available on Google's [BigQuery](https://cloud.google.com/blog/topics/public-datasets/github-on-bigquery-analyze-all-the-open-source-code). The database was queried for all Python files with less than 1MB in size resulting in a 180GB dataset with over 20M files. The dataset is available on the Hugging Face Hub [here](https://huggingface.co/datasets/transformersbook/codeparrot).
### Preprocessing
The raw dataset contains many duplicates. We deduplicated and filtered the dataset using the heuristics proposed in OpenAI's Codex [paper](https://arxiv.org/abs/2107.03374) and some new ones:
- exact deduplication using each file's hash after having removed whistespaces.
- near deduplication using MinHash and Jaccard similarity. MinHash with a Jaccard threshold (default=0.85) is first used to create duplicate clusters. Then these clusters are then reduced to unique files based on the exact Jaccard similarity. See `deduplicate_dataset` in `minhash_deduplication.py` for a detailed description.
- filtering files with max line length > 1000
- filtering files with mean line length > 100
- fraction of alphanumeric characters < 0.25
- containing the word "auto-generated" or similar in the first 5 lines
- filtering with a probability of 0.7 of files with a mention of "test file" or "configuration file" or similar in the first 5 lines
- filtering with a probability of 0.7 of files with high occurence of the keywords "test " or "config"
- filtering with a probability of 0.7 of files without a mention of the keywords `def` , `for`, `while` and `class`
- filtering files that use the assignment operator `=` less than 5 times
- filtering files with ratio between number of characters and number of tokens after tokenization < 1.5 (the average ratio is 3.6)
The script to process the full dataset can be found in `scripts/preprocessing.py`. Executing the script on 16 vCPUs takes roughly 3h and removes 70% of the original dataset. The cleaned [train](https://huggingface.co/datasets/codeparrot/codeparrot-clean-train-v2) and [validation](https://huggingface.co/datasets/codeparrot/codeparrot-clean-valid-v2) splits are also available on the Hub if you want to skip this step or use the data for another project.
To execute the preprocessing run the following command:
```bash
python scripts/preprocessing.py \
--dataset_name transformersbook/codeparrot \
--output_dir codeparrot-clean
```
During preprocessing the dataset is downloaded and stored locally as well as caches of the computations. Make sure you have more than 500GB free disk space to execute it.
### Pretokenization
The tokenization of the data might be slow during the training especially for small models. We provide code to pretokenize the data beforehand in `scripts/pretokenizing.py`, but this step is optional. The dataset is downloaded and stored locally and the tokenized data is pushed to the hub. The tokenized clean [train](https://huggingface.co/datasets/codeparrot/tokenized-codeparrot-train) and [validation](https://huggingface.co/datasets/codeparrot/tokenized-codeparrot-valid) datasets are available if you want to use them directly.
To execute the pretokenization, for the clean train data for instance, run the following command:
```bash
python scripts/pretokenizing.py \
--dataset_name codeparrot/codeparrot-clean-train \
--tokenized_data_repo tokenized-codeparrot-train
```
## Tokenizer
Before training a new model for code we create a new tokenizer that is efficient at code tokenization. To train the tokenizer you can run the following command:
```bash
python scripts/bpe_training.py \
--base_tokenizer gpt2 \
--dataset_name codeparrot/codeparrot-clean-train
```
_Note:_ We originally trained the tokenizer on the unprocessed train split of the dataset `transformersbook/codeparrot-train`.
## Training
The models are randomly initialized and trained from scratch. To initialize a new model you can run:
```bash
python scripts/initialize_model.py \
--config_name gpt2-large \
--tokenizer_name codeparrot/codeparrot \
--model_name codeparrot \
--push_to_hub True
```
This will initialize a new model with the architecture and configuration of `gpt2-large` and use the tokenizer to appropriately size the input embeddings. Finally, the initilaized model is pushed the hub.
We can either pass the name of a text dataset or a pretokenized dataset which speeds up training a bit.
Now that the tokenizer and model are also ready we can start training the model. The main training script is built with `accelerate` to scale across a wide range of platforms and infrastructure scales. We train two models with [110M](https://huggingface.co/codeparrot/codeparrot-small/) and [1.5B](https://huggingface.co/codeparrot/codeparrot/) parameters for 25-30B tokens on a 16xA100 (40GB) machine which takes 1 day and 1 week, respectively.
First you need to configure `accelerate` and login to Weights & Biases:
```bash
accelerate config
wandb login
```
Note that during the `accelerate` configuration we enabled FP16. Then to train the large model you can run
```bash
accelerate launch scripts/codeparrot_training.py
```
If you want to train the small model you need to make some modifications:
```bash
accelerate launch scripts/codeparrot_training.py \
--model_ckpt codeparrot/codeparrot-small \
--train_batch_size 12 \
--valid_batch_size 12 \
--learning_rate 5e-4 \
--num_warmup_steps 2000 \
--gradient_accumulation 1 \
--gradient_checkpointing False \
--max_train_steps 150000 \
--save_checkpoint_steps 15000
```
Recall that you can see the full set of possible options with descriptions (for all scripts) by running:
```bash
python scripts/codeparrot_training.py --help
```
Instead of streaming the dataset from the hub you can also stream it from disk. This can be helpful for long training runs where the connection can be interrupted sometimes. To stream locally you simply need to clone the datasets and replace the dataset name with their path. In this example we store the data in a folder called `data`:
```bash
git lfs install
mkdir data
git -C "./data" clone https://huggingface.co/datasets/codeparrot/codeparrot-clean-train
git -C "./data" clone https://huggingface.co/datasets/codeparrot/codeparrot-clean-valid
```
And then pass the paths to the datasets when we run the training script:
```bash
accelerate launch scripts/codeparrot_training.py \
--model_ckpt codeparrot/codeparrot-small \
--dataset_name_train ./data/codeparrot-clean-train \
--dataset_name_valid ./data/codeparrot-clean-valid \
--train_batch_size 12 \
--valid_batch_size 12 \
--learning_rate 5e-4 \
--num_warmup_steps 2000 \
--gradient_accumulation 1 \
--gradient_checkpointing False \
--max_train_steps 150000 \
--save_checkpoint_steps 15000
```
## Evaluation
For evaluating the language modeling loss on the validation set or any other dataset you can use the following command:
```bash
python scripts/validation_loss.py \
--model_ckpt codeparrot/codeparrot \
--dataset_name codeparrot/codeparrot-clean-valid
```
In addition we evaluate the model on OpenAI's _HumanEval_ benchmark. You can run the evaluation with the following command:
```bash
accelerate launch scripts/human_eval.py --model_ckpt codeparrot/codeparrot \
--do_sample True \
--temperature 0.2 \
--top_p 0.95 \
--n_samples=200 \
--HF_ALLOW_CODE_EVAL="0"
```
The results as well as reference values are shown in the following table:
| Model | pass@1 | pass@10 | pass@100|
|-------|--------|---------|---------|
|CodeParrot 🦜 (110M) | 3.80% | 6.57% | 12.78% |
|CodeParrot 🦜 (1.5B) | 3.99% | 8.69% | 17.88% |
|||||
|Codex (25M)| 3.21% | 7.1% | 12.89%|
|Codex (85M)| 8.22% | 12.81% | 22.40% |
|Codex (300M)| 13.17%| 20.37% | 36.27% |
|Codex (12B)| 28.81%| 46.81% | 72.31% |
|||||
|GPT-neo (125M)| 0.75% | 1.88% | 2.97% |
|GPT-neo (1.5B)| 4.79% | 7.47% | 16.30% |
|GPT-neo (2.7B)| 6.41% | 11.27% | 21.37% |
|GPT-J (6B)| 11.62% | 15.74% | 27.74% |
The numbers were obtained by sampling with `T = [0.2, 0.6, 0.8]` and picking the best value for each metric. Both CodeParrot 🦜 models are still underfitted and longer training would likely improve the performance.
## Demo
Give the model a shot yourself! There are three demos to interact with CodeParrot 🦜:
- [Code generation](https://huggingface.co/spaces/codeparrot/codeparrot-generation)
- [Code highlighting](https://huggingface.co/spaces/codeparrot/codeparrot-highlighting)
- [Comparison to other code models](https://huggingface.co/spaces/codeparrot/loubnabnl/code-generation-models)
## Training with Megatron
[Megatron](https://github.com/NVIDIA/Megatron-LM) is a framework developed by NVIDIA for training large transformer models. While the CodeParrot code is easy to follow and modify to your needs the Megatron framework lets you train models faster. Below we explain how to use it.
### Setup
You can pull an NVIDIA PyTorch Container that comes with all the required installations from [NGC](https://catalog.ngc.nvidia.com/orgs/nvidia/containers/pytorch). See [documentation](https://docs.nvidia.com/deeplearning/frameworks/pytorch-release-notes/index.html) for more details:
With the following Docker command you can run the container (`xx.xx` denotes your Docker version), and clone [Megatron repository](https://github.com/NVIDIA/Megatron-LM) into it:
```bash
docker run --gpus all -it --rm nvcr.io/nvidia/pytorch:xx.xx-py3
git clone https://github.com/NVIDIA/Megatron-LM
```
You also need to add the vocabulary file and merges table of the tokenizer that you trained on code into the container. You can also find these files in [vocab.json](https://huggingface.co/codeparrot/codeparrot/raw/main/vocab.json) and [merges.txt](https://huggingface.co/codeparrot/codeparrot/raw/main/merges.txt).
```bash
sudo docker cp vocab.json CONTAINER_ID:/workspace/Megatron-LM
sudo docker cp merges.txt CONTAINER_ID:/workspace/Megatron-LM
```
### Data preprocessing
The training data requires preprocessing. First, you need to convert it into a loose json format, with one json containing a text sample per line. In python this can be done this way:
```python
from datasets import load_dataset
train_data = load_dataset('codeparrot/codeparrot-clean-train', split='train')
train_data.to_json("codeparrot_data.json", lines=True)
```
The data is then tokenized, shuffled and processed into a binary format for training using the following command:
```bash
pip install nltk
cd Megatron-LM
python tools/preprocess_data.py \
--input codeparrot_data.json \
--output-prefix codeparrot \
--vocab vocab.json \
--dataset-impl mmap \
--tokenizer-type GPT2BPETokenizer \
--merge-file merges.txt \
--json-keys content \
--workers 32 \
--chunk-size 25 \
--append-eod
```
This outputs two files `codeparrot_content_document.idx` and `codeparrot_content_document.bin` which are used in the training.
### Training
You can configure the model architecture and training parameters as shown below, or put it in a bash script that you will run. This runs on 8 GPUs the 110M parameter CodeParrot pretraining, with the same settings as before. Note that the data is partitioned by default into a 969:30:1 ratio for training/validation/test sets.
```bash
GPUS_PER_NODE=8
MASTER_ADDR=localhost
MASTER_PORT=6001
NNODES=1
NODE_RANK=0
WORLD_SIZE=$(($GPUS_PER_NODE*$NNODES))
DISTRIBUTED_ARGS="--nproc_per_node $GPUS_PER_NODE --nnodes $NNODES --node_rank $NODE_RANK --master_addr $MASTER_ADDR --master_port $MASTER_PORT"
CHECKPOINT_PATH=/workspace/Megatron-LM/experiments/codeparrot-small
VOCAB_FILE=vocab.json
MERGE_FILE=merges.txt
DATA_PATH=codeparrot_content_document
GPT_ARGS="--num-layers 12
--hidden-size 768
--num-attention-heads 12
--seq-length 1024
--max-position-embeddings 1024
--micro-batch-size 12
--global-batch-size 192
--lr 0.0005
--train-iters 150000
--lr-decay-iters 150000
--lr-decay-style cosine
--lr-warmup-iters 2000
--weight-decay .1
--adam-beta2 .999
--fp16
--log-interval 10
--save-interval 2000
--eval-interval 200
--eval-iters 10
"
TENSORBOARD_ARGS="--tensorboard-dir experiments/tensorboard"
python3 -m torch.distributed.launch $DISTRIBUTED_ARGS \
pretrain_gpt.py \
--tensor-model-parallel-size 1 \
--pipeline-model-parallel-size 1 \
$GPT_ARGS \
--vocab-file $VOCAB_FILE \
--merge-file $MERGE_FILE \
--save $CHECKPOINT_PATH \
--load $CHECKPOINT_PATH \
--data-path $DATA_PATH \
$TENSORBOARD_ARGS
```
The training takes almost 12 hours in this setting.
### Convert model to `transformers`
After training we want to use the model in `transformers` e.g. to evaluate it on HumanEval. You can convert it to `transformers` following [this](https://huggingface.co/nvidia/megatron-gpt2-345m) tutorial. For instance, after the training is finished you can copy the weights of the last iteration 150k and convert the `model_optim_rng.pt` file to a `pytorch_model.bin` file that is supported by `transformers`.
```bash
mkdir -p nvidia/megatron-codeparrot-small
sudo docker cp CONTAINER_ID:/workspace/Megatron-LM/experiments/codeparrot-small/iter_0150000/mp_rank_00/model_optim_rng.pt nvidia/megatron-codeparrot-small
git clone https://github.com/huggingface/transformers.git
git clone https://github.com/NVIDIA/Megatron-LM.git
export PYTHONPATH=Megatron-LM
python transformers/src/transformers/models/megatron_gpt2/convert_megatron_gpt2_checkpoint.py nvidia/megatron-codeparrot-small/model_optim_rng.pt
```
Be careful, you will need to replace the generated vocabulary file and merges table after the conversion, with the original ones if you plan to load the tokenizer from there.
## Further Resources
A detailed description of the project can be found in the chapter "Training Transformers from Scratch" in the upcoming O'Reilly book [Natural Language Processing with Transformers](https://learning.oreilly.com/library/view/natural-language-processing/9781098103231/).
This example was provided by [Leandro von Werra](www.github.com/lvwerra).
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/codeparrot/requirements.txt
|
transformers==4.19.0
datasets==1.16.0
wandb==0.12.0
tensorboard==2.6.0
torch==1.11.0
huggingface-hub==0.1.0
git+https://github.com/huggingface/accelerate.git@3c45b6f760ad8745be9ebc9bbb26f5b04dea4abe
datasketch==1.5.7
dpu_utils
| 0 |
hf_public_repos/transformers/examples/research_projects/codeparrot
|
hf_public_repos/transformers/examples/research_projects/codeparrot/scripts/initialize_model.py
|
from arguments import InitializationArguments
from transformers import AutoConfig, AutoModelForCausalLM, AutoTokenizer, HfArgumentParser
# Configuration
parser = HfArgumentParser(InitializationArguments)
args = parser.parse_args()
# Load codeparrot tokenizer trained for Python code tokenization
tokenizer = AutoTokenizer.from_pretrained(args.tokenizer_name)
# Config: "scale_attn_by_layer_idx" and "reorder_and_upcast_attn" are Mistral stability tweaks
config_kwargs = {
"vocab_size": len(tokenizer),
"scale_attn_by_inverse_layer_idx": True,
"reorder_and_upcast_attn": True,
}
# Load model config (GPT-2 large in this case)
config = AutoConfig.from_pretrained(args.config_name, **config_kwargs)
# Initialize new model with config
model = AutoModelForCausalLM.from_config(config)
# Save model to the hub
model.save_pretrained(args.model_name, push_to_hub=args.push_to_hub)
| 0 |
hf_public_repos/transformers/examples/research_projects/codeparrot
|
hf_public_repos/transformers/examples/research_projects/codeparrot/scripts/codeparrot_training.py
|
import logging
import os
import time
from argparse import Namespace
from pathlib import Path
import datasets
import torch
from accelerate import Accelerator, DistributedType
from accelerate.utils import ProjectConfiguration
from arguments import TrainingArguments
from datasets import load_dataset
from huggingface_hub import Repository
from torch.optim import AdamW
from torch.utils.data import IterableDataset
from torch.utils.data.dataloader import DataLoader
from torch.utils.data.datapipes.iter.combinatorics import ShufflerIterDataPipe
import transformers
from transformers import AutoModelForCausalLM, AutoTokenizer, HfArgumentParser, get_scheduler, set_seed
class ConstantLengthDataset(IterableDataset):
"""
Iterable dataset that returns constant length chunks of tokens from stream of text files.
Args:
tokenizer (Tokenizer): The processor used for proccessing the data.
dataset (dataset.Dataset): Dataset with text files.
infinite (bool): If True the iterator is reset after dataset reaches end else stops.
seq_length (int): Length of token sequences to return.
num_of_sequences (int): Number of token sequences to keep in buffer.
chars_per_token (int): Number of characters per token used to estimate number of tokens in text buffer.
tokenized (bool): If true we use a pretokenized dataset.
"""
def __init__(
self,
tokenizer,
dataset,
infinite=False,
seq_length=1024,
num_of_sequences=1024,
chars_per_token=3.6,
tokenized=False,
):
self.tokenizer = tokenizer
self.concat_token_id = tokenizer.bos_token_id
self.dataset = dataset
self.seq_length = seq_length
self.epoch = 0
self.infinite = infinite
self.current_size = 0
self.tokenized = tokenized
if self.tokenized:
self.max_buffer_size = seq_length * num_of_sequences
self.content_field = "input_ids"
else:
self.max_buffer_size = seq_length * chars_per_token * num_of_sequences
self.content_field = "content"
def __iter__(self):
iterator = iter(self.dataset)
more_examples = True
while more_examples:
buffer, buffer_len = [], 0
while True:
if buffer_len >= self.max_buffer_size:
break
try:
buffer.append(next(iterator)[self.content_field])
buffer_len += len(buffer[-1])
except StopIteration:
if self.infinite:
iterator = iter(self.dataset)
self.epoch += 1
logger.info(f"Dataset epoch: {self.epoch}")
else:
more_examples = False
break
if self.tokenized:
tokenized_inputs = buffer
else:
tokenized_inputs = self.tokenizer(buffer, truncation=False)["input_ids"]
all_token_ids = []
for tokenized_input in tokenized_inputs:
all_token_ids.extend(tokenized_input + [self.concat_token_id])
for i in range(0, len(all_token_ids), self.seq_length):
input_ids = all_token_ids[i : i + self.seq_length]
if len(input_ids) == self.seq_length:
self.current_size += 1
yield torch.tensor(input_ids)
def shuffle(self, buffer_size=1000):
return ShufflerIterDataPipe(self, buffer_size=buffer_size)
def setup_logging(args):
project_name = args.model_ckpt.split("/")[-1]
logger = logging.getLogger(__name__)
log_dir = Path(args.save_dir) / "log/"
log_dir.mkdir(exist_ok=True)
filename = f"debug_{accelerator.process_index}.log"
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO,
handlers=[logging.FileHandler(log_dir / filename), logging.StreamHandler()],
)
if accelerator.is_main_process: # we only want to setup logging once
accelerator.init_trackers(project_name, vars(args))
run_name = accelerator.trackers[0].run.name
logger.setLevel(logging.INFO)
datasets.utils.logging.set_verbosity_info()
transformers.utils.logging.set_verbosity_info()
else:
run_name = ""
logger.setLevel(logging.ERROR)
datasets.utils.logging.set_verbosity_error()
transformers.utils.logging.set_verbosity_error()
return logger, run_name
def create_dataloaders(args):
ds_kwargs = {"streaming": True}
train_data = load_dataset(args.dataset_name_train, split="train", **ds_kwargs)
train_data = train_data.shuffle(buffer_size=args.shuffle_buffer, seed=args.seed)
valid_data = load_dataset(args.dataset_name_valid, split="train", **ds_kwargs)
train_dataset = ConstantLengthDataset(
tokenizer, train_data, infinite=True, seq_length=args.seq_length, tokenized=args.tokenized
)
valid_dataset = ConstantLengthDataset(
tokenizer, valid_data, infinite=False, seq_length=args.seq_length, tokenized=args.tokenized
)
train_dataset = train_dataset.shuffle(buffer_size=args.shuffle_buffer)
train_dataloader = DataLoader(train_dataset, batch_size=args.train_batch_size, shuffle=True)
eval_dataloader = DataLoader(valid_dataset, batch_size=args.valid_batch_size)
return train_dataloader, eval_dataloader
def get_grouped_params(model, args, no_decay=["bias", "ln_1.weight", "ln_2.weight", "ln_f.weight"]):
params_with_wd, params_without_wd = [], []
for n, p in model.named_parameters():
if any(nd in n for nd in no_decay):
params_without_wd.append(p)
else:
params_with_wd.append(p)
return [
{"params": params_with_wd, "weight_decay": args.weight_decay},
{"params": params_without_wd, "weight_decay": 0.0},
]
def log_metrics(step, metrics):
logger.info(f"Step {step}: {metrics}")
if accelerator.is_main_process:
accelerator.log(metrics, step)
def compute_tflops(elapsed_time, accelerator, args):
# TFLOPs formula (from Equation 3 in Section 5.1 of https://arxiv.org/pdf/2104.04473.pdf).
config_model = accelerator.unwrap_model(model).config
checkpoint_factor = 4 if args.gradient_checkpointing else 3
batch_size = args.train_batch_size * accelerator.state.num_processes * args.gradient_accumulation_steps
factor = 24 * checkpoint_factor * batch_size * args.seq_length * config_model.n_layer * (config_model.n_embd**2)
flops_per_iteration = factor * (
1.0
+ (args.seq_length / (6.0 * config_model.n_embd))
+ (tokenizer.vocab_size / (16.0 * config_model.n_layer * config_model.n_embd))
)
tflops = flops_per_iteration / (elapsed_time * accelerator.state.num_processes * (10**12))
return tflops
def evaluate(args):
model.eval()
losses = []
for step, batch in enumerate(eval_dataloader):
with torch.no_grad():
outputs = model(batch, labels=batch)
loss = outputs.loss.repeat(args.valid_batch_size)
losses.append(accelerator.gather(loss))
if args.max_eval_steps > 0 and step >= args.max_eval_steps:
break
losses = torch.cat(losses)
loss = losses[: eval_dataloader.dataset.current_size].mean()
try:
perplexity = torch.exp(loss)
except OverflowError:
perplexity = float("inf")
return loss.item(), perplexity.item()
# Settings
parser = HfArgumentParser(TrainingArguments)
args = parser.parse_args()
# Accelerator
config = ProjectConfiguration(project_dir=args.save_dir, logging_dir="log")
accelerator = Accelerator(log_with=["wandb", "tensorboard"], project_config=config)
acc_state = {str(k): str(v) for k, v in accelerator.state.__dict__.items()}
args = Namespace(**vars(args), **acc_state)
samples_per_step = accelerator.state.num_processes * args.train_batch_size
set_seed(args.seed)
# Clone model repository
if accelerator.is_main_process:
hf_repo = Repository(args.save_dir, clone_from=args.model_ckpt)
# Logging
logger, run_name = setup_logging(args)
logger.info(accelerator.state)
# Checkout new branch on repo
if accelerator.is_main_process:
hf_repo.git_checkout(run_name, create_branch_ok=True)
# Load model and tokenizer
model = AutoModelForCausalLM.from_pretrained(args.save_dir)
if args.gradient_checkpointing:
model.gradient_checkpointing_enable()
tokenizer = AutoTokenizer.from_pretrained(args.save_dir)
# Load dataset and dataloader
train_dataloader, eval_dataloader = create_dataloaders(args)
# Prepare the optimizer and learning rate scheduler
optimizer = AdamW(get_grouped_params(model, args), lr=args.learning_rate)
lr_scheduler = get_scheduler(
name=args.lr_scheduler_type,
optimizer=optimizer,
num_warmup_steps=args.num_warmup_steps,
num_training_steps=args.max_train_steps,
)
accelerator.register_for_checkpointing(lr_scheduler)
def get_lr():
return optimizer.param_groups[0]["lr"]
# Prepare everything with our `accelerator`.
model, optimizer, train_dataloader, eval_dataloader = accelerator.prepare(
model, optimizer, train_dataloader, eval_dataloader
)
# load in the weights and states from a previous save
if args.resume_from_checkpoint:
if args.resume_from_checkpoint is not None or args.resume_from_checkpoint != "":
accelerator.print(f"Resumed from checkpoint: {args.resume_from_checkpoint}")
accelerator.load_state(args.resume_from_checkpoint)
path = os.path.basename(args.resume_from_checkpoint)
else:
# Get the most recent checkpoint
dirs = [f.name for f in os.scandir(args.save_dir) if f.is_dir() and "step" in str(f)]
dirs.sort(key=os.path.getctime)
path = dirs[-1] # Sorts folders by date modified, most recent checkpoint is the last
# Extract the step of the checkpoint to continue from there
training_difference = os.path.splitext(path)[0]
resume_step = int(training_difference.replace("step_", ""))
# Train model
model.train()
completed_steps = 0
t_start = time.time()
loss_tracking = 0
for step, batch in enumerate(train_dataloader, start=1):
if args.resume_from_checkpoint and step < resume_step:
continue # we need to skip steps until we reach the resumed step
loss = model(batch, labels=batch, use_cache=False).loss
avg_loss = accelerator.gather(loss.repeat(args.train_batch_size)).mean()
loss_tracking += avg_loss.item() / args.gradient_accumulation_steps
log_metrics(step, {"samples": step * samples_per_step, "loss_per_step/train": loss.item()})
loss = loss / args.gradient_accumulation_steps
if step % args.gradient_accumulation_steps != 0:
# Prevent backward from doing gradient all_reduce in every step
if accelerator.distributed_type == DistributedType.MULTI_GPU:
with model.no_sync():
accelerator.backward(loss)
else:
accelerator.backward(loss)
else:
lr = get_lr()
accelerator.backward(loss)
accelerator.clip_grad_norm_(model.parameters(), 1.0)
optimizer.step()
lr_scheduler.step()
optimizer.zero_grad()
elapsed_time = time.time() - t_start
tflops = compute_tflops(elapsed_time, accelerator, args)
log_metrics(
step,
{
"steps": completed_steps,
"loss/train": loss_tracking,
"lr": lr,
"tflops": tflops,
"time_per_iteration": elapsed_time,
},
)
t_start = time.time()
loss_tracking = 0
completed_steps += 1
if step % args.save_checkpoint_steps == 0:
logger.info("Evaluating and saving model checkpoint")
eval_loss, perplexity = evaluate(args)
log_metrics(step, {"loss/eval": eval_loss, "perplexity": perplexity})
accelerator.wait_for_everyone()
save_dir = os.path.join(args.save_dir, f"step_{step}")
accelerator.save_state(save_dir)
if accelerator.is_main_process:
hf_repo.push_to_hub(commit_message=f"step {step}")
model.train()
if completed_steps >= args.max_train_steps:
break
# Evaluate and save the last checkpoint
logger.info("Evaluating and saving model after training")
eval_loss, perplexity = evaluate(args)
log_metrics(step, {"loss/eval": eval_loss, "perplexity": perplexity})
accelerator.wait_for_everyone()
unwrapped_model = accelerator.unwrap_model(model)
unwrapped_model.save_pretrained(args.save_dir, save_function=accelerator.save)
save_dir = os.path.join(args.save_dir, f"step_{step}")
accelerator.save_state(save_dir)
if accelerator.is_main_process:
hf_repo.push_to_hub(commit_message="final model")
| 0 |
hf_public_repos/transformers/examples/research_projects/codeparrot
|
hf_public_repos/transformers/examples/research_projects/codeparrot/scripts/pretokenizing.py
|
import multiprocessing
import time
from arguments import PretokenizationArguments
from datasets import load_dataset
from transformers import AutoTokenizer, HfArgumentParser
def tokenize(example):
output = {}
output["input_ids"] = tokenizer(example["content"], truncation=False)["input_ids"]
output["ratio_char_token"] = len(example["content"]) / len(output["input_ids"])
return output
parser = HfArgumentParser(PretokenizationArguments)
args = parser.parse_args()
if args.num_workers is None:
args.num_workers = multiprocessing.cpu_count()
tokenizer = AutoTokenizer.from_pretrained(args.tokenizer_dir)
t_start = time.time()
ds = load_dataset(args.dataset_name, split="train")
print(f"Dataset loaded in {time.time()-t_start:.2f}s")
t_start = time.time()
ds = ds.map(
tokenize,
num_proc=args.num_workers,
remove_columns=[
"repo_name",
"path",
"copies",
"size",
"content",
"license",
"hash",
"line_mean",
"line_max",
"alpha_frac",
"autogenerated",
],
)
print(f"Dataset tokenized in {time.time()-t_start:.2f}s")
t_start = time.time()
ds.push_to_hub(args.tokenized_data_repo)
print(f"Data pushed to the hub in {time.time()-t_start:.2f}s")
| 0 |
hf_public_repos/transformers/examples/research_projects/codeparrot
|
hf_public_repos/transformers/examples/research_projects/codeparrot/scripts/bpe_training.py
|
from arguments import TokenizerTrainingArguments
from datasets import load_dataset
from tqdm import tqdm
from transformers import AutoTokenizer, HfArgumentParser
from transformers.models.gpt2.tokenization_gpt2 import bytes_to_unicode
# Iterator for Training
def batch_iterator(batch_size=10):
for _ in tqdm(range(0, args.n_examples, batch_size)):
yield [next(iter_dataset)[args.text_column] for _ in range(batch_size)]
# Configuration
parser = HfArgumentParser(TokenizerTrainingArguments)
args = parser.parse_args()
# Base tokenizer
tokenizer = AutoTokenizer.from_pretrained(args.base_tokenizer)
base_vocab = list(bytes_to_unicode().values())
# Load dataset
dataset = load_dataset(args.dataset_name, split="train", streaming=True)
iter_dataset = iter(dataset)
# Training and saving
new_tokenizer = tokenizer.train_new_from_iterator(
batch_iterator(), vocab_size=args.vocab_size, initial_alphabet=base_vocab
)
new_tokenizer.save_pretrained(args.tokenizer_name, push_to_hub=args.push_to_hub)
| 0 |
hf_public_repos/transformers/examples/research_projects/codeparrot
|
hf_public_repos/transformers/examples/research_projects/codeparrot/scripts/preprocessing.py
|
import gzip
import json
import multiprocessing
import os
import re
import shutil
import time
from pathlib import Path
import numpy as np
from arguments import PreprocessingArguments
from datasets import load_dataset
from huggingface_hub.utils import insecure_hashlib
from minhash_deduplication import deduplicate_dataset
from transformers import AutoTokenizer, HfArgumentParser
PATTERN = re.compile(r"\s+")
def get_hash(example):
"""Get hash of content field."""
return {"hash": insecure_hashlib.md5(re.sub(PATTERN, "", example["content"]).encode("utf-8")).hexdigest()}
def line_stats(example):
"""Calculates mean and max line length of file."""
line_lengths = [len(line) for line in example["content"].splitlines()]
return {"line_mean": np.mean(line_lengths), "line_max": max(line_lengths)}
def alpha_stats(example):
"""Calculates mean and max line length of file."""
alpha_frac = np.mean([c.isalnum() for c in example["content"]])
return {"alpha_frac": alpha_frac}
def check_uniques(example, uniques):
"""Check if current hash is still in set of unique hashes and remove if true."""
if example["hash"] in uniques:
uniques.remove(example["hash"])
return True
else:
return False
def is_autogenerated(example, scan_width=5):
"""Check if file is autogenerated by looking for keywords in the first few lines of the file."""
keywords = ["auto-generated", "autogenerated", "automatically generated"]
lines = example["content"].splitlines()
for _, line in zip(range(scan_width), lines):
for keyword in keywords:
if keyword in line.lower():
return {"autogenerated": True}
else:
return {"autogenerated": False}
def is_config_or_test(example, scan_width=5, coeff=0.05):
"""Check if file is a configuration file or a unit test by :
1- looking for keywords in the first few lines of the file.
2- counting number of occurence of the words 'config' and 'test' with respect to number of lines.
"""
keywords = ["unit tests", "test file", "configuration file"]
lines = example["content"].splitlines()
count_config = 0
count_test = 0
# first test
for _, line in zip(range(scan_width), lines):
for keyword in keywords:
if keyword in line.lower():
return {"config_or_test": True}
# second test
nlines = example["content"].count("\n")
threshold = int(coeff * nlines)
for line in lines:
count_config += line.lower().count("config")
count_test += line.lower().count("test")
if count_config > threshold or count_test > threshold:
return {"config_or_test": True}
return {"config_or_test": False}
def has_no_keywords(example):
"""Check if a python file has none of the keywords for: funcion, class, for loop, while loop."""
keywords = ["def ", "class ", "for ", "while "]
lines = example["content"].splitlines()
for line in lines:
for keyword in keywords:
if keyword in line.lower():
return {"has_no_keywords": False}
return {"has_no_keywords": True}
def has_few_assignments(example, minimum=4):
"""Check if file uses symbol '=' less than `minimum` times."""
lines = example["content"].splitlines()
counter = 0
for line in lines:
counter += line.lower().count("=")
if counter > minimum:
return {"has_few_assignments": False}
return {"has_few_assignments": True}
def char_token_ratio(example):
"""Compute character/token ratio of the file with tokenizer."""
input_ids = tokenizer(example["content"], truncation=False)["input_ids"]
ratio = len(example["content"]) / len(input_ids)
return {"ratio": ratio}
def preprocess(example):
"""Chain all preprocessing steps into one function to not fill cache."""
results = {}
results.update(get_hash(example))
results.update(line_stats(example))
results.update(alpha_stats(example))
results.update(char_token_ratio(example))
results.update(is_autogenerated(example))
results.update(is_config_or_test(example))
results.update(has_no_keywords(example))
results.update(has_few_assignments(example))
return results
def filter(example, uniques, args):
"""Filter dataset with heuristics. Config, test and has_no_keywords files are removed with a given probability."""
if not check_uniques(example, uniques):
return False
elif example["autogenerated"]:
return False
elif example["line_max"] > args.line_max:
return False
elif example["line_mean"] > args.line_mean:
return False
elif example["alpha_frac"] < args.alpha_frac:
return False
elif example["ratio"] < args.min_token_ratio:
return False
elif example["config_or_test"] and np.random.rand() <= args.filter_proba:
return False
elif example["has_no_keywords"] and np.random.rand() <= args.filter_proba:
return False
elif example["has_few_assignments"]:
return False
else:
return True
def compress_file(file_path):
"""Compress a file with g-zip."""
with open(file_path, "rb") as f_in:
with gzip.open(str(file_path) + ".gz", "wb", compresslevel=6) as f_out:
shutil.copyfileobj(f_in, f_out)
os.unlink(file_path)
# Settings
parser = HfArgumentParser(PreprocessingArguments)
args = parser.parse_args()
if args.num_workers is None:
args.num_workers = multiprocessing.cpu_count()
tokenizer = AutoTokenizer.from_pretrained(args.tokenizer_dir)
# Load dataset
t_start = time.time()
ds = load_dataset(args.dataset_name, split="train")
print(f"Time to load dataset: {time.time()-t_start:.2f}")
# Run preprocessing
t_start = time.time()
ds = ds.map(preprocess, num_proc=args.num_workers)
print(f"Time to preprocess dataset: {time.time()-t_start:.2f}")
# Deduplicate hashes
uniques = set(ds.unique("hash"))
frac = len(uniques) / len(ds)
print(f"Fraction of duplicates: {1-frac:.2%}")
# Deduplicate data and apply heuristics
t_start = time.time()
ds_filter = ds.filter(filter, fn_kwargs={"uniques": uniques, "args": args})
print(f"Time to filter dataset: {time.time()-t_start:.2f}")
print(f"Size of filtered dataset: {len(ds_filter)}")
# Deduplicate with minhash and jaccard similarity
if args.near_deduplication:
t_start = time.time()
ds_filter, duplicate_clusters = deduplicate_dataset(ds_filter, args.jaccard_threshold)
print(f"Time to deduplicate dataset: {time.time()-t_start:.2f}")
print(f"Size of deduplicate dataset: {len(ds_filter)}")
# Save data in batches of samples_per_file
output_dir = Path(args.output_dir)
output_dir.mkdir(exist_ok=True)
# save duplicate_clusters in the output_dir as artifacts
# not sure it is the right place the save it
if args.near_deduplication:
with open(output_dir / "duplicate_clusters.json", "w") as f:
json.dump(duplicate_clusters, f)
data_dir = output_dir / "data"
data_dir.mkdir(exist_ok=True)
t_start = time.time()
for file_number, index in enumerate(range(0, len(ds_filter), args.samples_per_file)):
file_path = str(data_dir / f"file-{file_number+1:012}.json")
end_index = min(len(ds_filter), index + args.samples_per_file)
ds_filter.select(list(range(index, end_index))).to_json(file_path)
compress_file(file_path)
print(f"Time to save dataset: {time.time()-t_start:.2f}")
| 0 |
hf_public_repos/transformers/examples/research_projects/codeparrot
|
hf_public_repos/transformers/examples/research_projects/codeparrot/scripts/human_eval.py
|
import json
import multiprocessing
import os
import re
from collections import defaultdict
import torch
from accelerate import Accelerator
from accelerate.utils import set_seed
from arguments import HumanEvalArguments
from datasets import load_dataset, load_metric
from torch.utils.data import IterableDataset
from torch.utils.data.dataloader import DataLoader
from tqdm import tqdm
import transformers
from transformers import AutoModelForCausalLM, AutoTokenizer, HfArgumentParser, StoppingCriteria, StoppingCriteriaList
EOF_STRINGS = ["\nclass", "\ndef", "\n#", "\n@", "\nprint", "\nif"]
class TokenizedDataset(IterableDataset):
"""Tokenize and preprocess the dataset
Multiple copies of the same prompt are sent sequentially.
See compute_code for more details.
"""
def __init__(self, tokenizer, dataset, n_tasks=None, n_copies=1):
self.tokenizer = tokenizer
self.dataset = dataset
self.n_tasks = len(dataset) if n_tasks is None else n_tasks
self.n_copies = n_copies
def __iter__(self):
prompts = []
for task in range(self.n_tasks):
# without strip, the model generate commented codes ...
prompts.append(self.tokenizer.eos_token + self.dataset[task]["prompt"].strip())
outputs = self.tokenizer(prompts, padding=True, return_tensors="pt")
for task in range(self.n_tasks):
for _ in range(self.n_copies):
yield {
"ids": outputs.input_ids[task],
"task_id": task,
"input_len": outputs.attention_mask[task].sum(),
}
class EndOfFunctionCriteria(StoppingCriteria):
"""Custom `StoppingCriteria` which checks if all generated functions in the batch are completed."""
def __init__(self, start_length, eof_strings, tokenizer):
self.start_length = start_length
self.eof_strings = eof_strings
self.tokenizer = tokenizer
def __call__(self, input_ids, scores, **kwargs):
"""Returns true if all generated sequences contain any of the end-of-function strings."""
decoded_generations = self.tokenizer.batch_decode(input_ids[:, self.start_length :])
done = []
for decoded_generation in decoded_generations:
done.append(any(stop_string in decoded_generation for stop_string in self.eof_strings))
return all(done)
def remove_last_block(string):
"""Remove the last block of the code containing EOF_STRINGS"""
string_list = re.split("(%s)" % "|".join(EOF_STRINGS), string)
# last string should be ""
return "".join(string_list[:-2])
def complete_code(accelerator, model, tokenizer, dataloader, n_tasks, batch_size=20, **gen_kwargs):
"""Generate multiple codes for each task in the dataset. This function leverage accelerator to distribute
the processing to multiple GPUs.
dataloader, a wrapper around a TokenizeDataset objectm is supposed to send all the prompts from
the evalution dataset to the modelm as the following:
[p_0_0, p_0_1, ..., p_0_nc-1, p_1_0, ..., p_nt-1_nc-1]
where nc is the number of copies of the prompt, and nt is the number of tasks.
nc is such that num_sample = nc * batch_size
Parameters
----------
accelerator: Accelerator
model: transformers.PreTrainedModel
Code generation model. AutoTokenizer.from_pretrained(model_ckpt), ex model_ckpt = "lvwerra/codeparrot"
tokenizer: transformers.AutoTokenizer
The tokenizer used to train model
dataloader: DataLoader
The dataloader is a wrapper around a TokenizeDataset object. It is designed to be used with multiple GPUs.
n_tasks: int
The number of tasks in the dataset. It is used to determine the length of the output.
Should be aligned with the number of tasks in the TokenizeDataset.
batch_size: int
num_return_sequences per copy of the prompt such that num_sample = batch_size * n_copies
gen_kwargs: dict
Keyword arguments for the generation function of the model.
Returns
-------
code_gens: list of list of str, of length n_tasks
List of generated codes for each task.
Each element is a list of generated codes for each task, with length num_samples
"""
gen_token_dict = defaultdict(list) # dict of list of generated tokens
for step, batch in tqdm(enumerate(dataloader)):
with torch.no_grad():
gen_kwargs["stopping_criteria"][0].start_length = batch["ids"].shape[-1]
generated_tokens = accelerator.unwrap_model(model).generate(
input_ids=batch["ids"][:, : batch["input_len"]], num_return_sequences=batch_size, **gen_kwargs
)
# each task is generated batch_size times
generated_tasks = batch["task_id"].repeat(batch_size)
generated_tokens = accelerator.pad_across_processes(
generated_tokens, dim=1, pad_index=tokenizer.pad_token_id
)
generated_tokens, generated_tasks = accelerator.gather((generated_tokens, generated_tasks))
generated_tokens = generated_tokens.cpu().numpy()
generated_tasks = generated_tasks.cpu().numpy()
for task, generated_tokens in zip(generated_tasks, generated_tokens):
gen_token_dict[task].append(generated_tokens)
code_gens = [[] for _ in range(n_tasks)]
for task, generated_tokens in gen_token_dict.items():
for s in generated_tokens:
gen_code = tokenizer.decode(s, skip_special_tokens=True, clean_up_tokenization_spaces=True)
code_gens[task].append(remove_last_block(gen_code))
return code_gens
def main():
# Setup configuration
parser = HfArgumentParser(HumanEvalArguments)
args = parser.parse_args()
transformers.logging.set_verbosity_error()
# enables code execution in code_eval metric
os.environ["HF_ALLOW_CODE_EVAL"] = args.HF_ALLOW_CODE_EVAL
# make sure tokenizer plays nice with multiprocessing
os.environ["TOKENIZERS_PARALLELISM"] = "false"
if args.num_workers is None:
args.num_workers = multiprocessing.cpu_count()
# Use dataset load to feed to accelerate
accelerator = Accelerator()
set_seed(args.seed, device_specific=True)
# Load model and tokenizer
tokenizer = AutoTokenizer.from_pretrained(args.model_ckpt)
tokenizer.pad_token = tokenizer.eos_token
model = AutoModelForCausalLM.from_pretrained(args.model_ckpt)
# Generation settings
gen_kwargs = {
"do_sample": args.do_sample,
"temperature": args.temperature,
"max_new_tokens": args.max_new_tokens,
"top_p": args.top_p,
"top_k": args.top_k,
"stopping_criteria": StoppingCriteriaList([EndOfFunctionCriteria(0, EOF_STRINGS, tokenizer)]),
}
# Load evaluation dataset and metric
human_eval = load_dataset("openai_humaneval")
code_eval_metric = load_metric("code_eval")
n_tasks = args.num_tasks if args.num_tasks is not None else len(human_eval["test"])
n_copies = args.n_samples // args.batch_size
human_eval_tokenized = TokenizedDataset(tokenizer, human_eval["test"], n_copies=n_copies, n_tasks=n_tasks)
# do not confuse args.batch_size, which is actually the num_return_sequences
human_eval_loader = DataLoader(human_eval_tokenized, batch_size=1)
# Run a quick test to see if code evaluation is enabled
try:
_ = code_eval_metric.compute(references=[""], predictions=[[""]])
except ValueError as exception:
print(
'Code evaluation not enabled. Read the warning below carefully and then use `--HF_ALLOW_CODE_EVAL="1"`'
" flag to enable code evaluation."
)
raise exception
model, human_eval_loader = accelerator.prepare(model, human_eval_loader)
generations = complete_code(
accelerator,
model,
tokenizer,
human_eval_loader,
n_tasks=n_tasks,
batch_size=args.batch_size,
**gen_kwargs,
)
if accelerator.is_main_process:
references = []
for task in tqdm(range(n_tasks)):
test_func = human_eval["test"][task]["test"]
entry_point = f"check({human_eval['test'][task]['entry_point']})"
references.append("\n" + test_func + "\n" + entry_point)
# Evaluate completions with "code_eval" metric
pass_at_k, _ = code_eval_metric.compute(
references=references, predictions=generations, num_workers=args.num_workers
)
print(f"Results: {pass_at_k}")
# Save results to json file
with open(args.output_file, "w") as fp:
json.dump(pass_at_k, fp)
# For some reason the folliwng seems to be necessary sometimes for code_eval to work nice with multiprocessing
# https://stackoverflow.com/questions/60804599/python-multiprocessing-keeps-spawning-the-whole-script
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects/codeparrot
|
hf_public_repos/transformers/examples/research_projects/codeparrot/scripts/validation_loss.py
|
import logging
import torch
from accelerate import Accelerator
from arguments import EvaluationArguments
from datasets import load_dataset
from torch.utils.data import IterableDataset
from torch.utils.data.dataloader import DataLoader
from transformers import AutoModelForCausalLM, AutoTokenizer, HfArgumentParser, set_seed
class ConstantLengthDataset(IterableDataset):
def __init__(self, tokenizer, dataset, seq_length=1024, num_of_sequences=1024, chars_per_token=3.6):
self.tokenizer = tokenizer
self.concat_token_id = tokenizer.bos_token_id
self.dataset = dataset
self.seq_length = seq_length
self.input_characters = seq_length * chars_per_token * num_of_sequences
def __iter__(self):
iterator = iter(self.dataset)
more_examples = True
while more_examples:
buffer, buffer_len = [], 0
while True:
if buffer_len >= self.input_characters:
break
try:
buffer.append(next(iterator)["content"])
buffer_len += len(buffer[-1])
except StopIteration:
more_examples = False
break
tokenized_inputs = tokenizer(buffer, truncation=False)["input_ids"]
all_token_ids = []
for tokenized_input in tokenized_inputs:
all_token_ids.extend(tokenized_input + [self.concat_token_id])
for i in range(0, len(all_token_ids), self.seq_length):
input_ids = all_token_ids[i : i + self.seq_length]
if len(input_ids) == self.seq_length:
yield torch.tensor(input_ids)
def create_dataloader(args):
ds_kwargs = {"streaming": True}
valid_data = load_dataset(args.dataset_name, split="train", **ds_kwargs)
valid_dataset = ConstantLengthDataset(tokenizer, valid_data, seq_length=args.seq_length)
eval_dataloader = DataLoader(valid_dataset, batch_size=args.batch_size)
return eval_dataloader
def evaluate(args):
model.eval()
losses = []
for step, batch in enumerate(eval_dataloader):
with torch.no_grad():
outputs = model(batch, labels=batch)
loss = outputs.loss.repeat(args.batch_size)
losses.append(accelerator.gather(loss))
if args.max_eval_steps > 0 and step >= args.max_eval_steps:
break
loss = torch.mean(torch.cat(losses))
try:
perplexity = torch.exp(loss)
except OverflowError:
perplexity = float("inf")
return loss.item(), perplexity.item()
# Setup Accelerator
accelerator = Accelerator()
# Parse configuration
parser = HfArgumentParser(EvaluationArguments)
args = parser.parse_args()
set_seed(args.seed)
# Logging
logger = logging.getLogger(__name__)
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s", datefmt="%m/%d/%Y %H:%M:%S", level=logging.INFO
)
# Load model and tokenizer
model = AutoModelForCausalLM.from_pretrained(args.model_ckpt)
tokenizer = AutoTokenizer.from_pretrained(args.model_ckpt)
# Load dataset and dataloader
eval_dataloader = create_dataloader(args)
# Prepare everything with our `accelerator`.
model, eval_dataloader = accelerator.prepare(model, eval_dataloader)
# Evaluate and save the last checkpoint
logger.info("Evaluating and saving model after training")
eval_loss, perplexity = evaluate(args)
logger.info(f"loss/eval: {eval_loss}, perplexity: {perplexity}")
| 0 |
hf_public_repos/transformers/examples/research_projects/codeparrot
|
hf_public_repos/transformers/examples/research_projects/codeparrot/scripts/minhash_deduplication.py
|
import json
import multiprocessing as mp
import re
from collections import defaultdict
from functools import partial
from typing import Dict, List, Optional, Set, Tuple, Type
from datasets import Dataset
from datasketch import MinHash, MinHashLSH
from dpu_utils.utils.iterators import ThreadedIterator
from tqdm import tqdm
NON_ALPHA = re.compile("[^A-Za-z_0-9]")
# parameters used in DuplicationIndex
MIN_NUM_TOKENS = 10
NUM_PERM = 256
def get_min_hash(tokens: List[str]) -> Optional[MinHash]:
"""Compute the MinHash of a code snippet."""
if len(tokens) < MIN_NUM_TOKENS:
return None
min_hash = MinHash(num_perm=NUM_PERM)
for token in set(tokens):
min_hash.update(token.encode())
return min_hash
def get_tokens(code: str) -> Set[str]:
"""Tokenize a code snippet."""
return {t for t in NON_ALPHA.split(code) if len(t.strip()) > 0}
class DuplicationIndex:
def __init__(
self,
*,
duplication_jaccard_threshold: float = 0.85,
):
self._duplication_jaccard_threshold = duplication_jaccard_threshold
self._num_perm = NUM_PERM
self._index = MinHashLSH(threshold=self._duplication_jaccard_threshold, num_perm=self._num_perm)
self._duplicate_clusters = defaultdict(set)
def add(self, code_key: Tuple, min_hash: MinHash) -> None:
"""Add a key to _index (MinHashLSH)
the min_hash is used to query closest matches based on the jaccard_threshold.
The new key is either added to a existing cluster of one close match,
or a new cluster is created. The clusters created in this way, depend on the order of add.
Args:
code_key (Tuple of (index, repo_name, path)):
Theoritically any hasbale key. Here we use a tuple to retrieve the information later.
min_hash: MinHash of the code_key.
"""
close_duplicates = self._index.query(min_hash)
if code_key in self._index.keys:
print(f"Duplicate key {code_key}")
return
self._index.insert(code_key, min_hash)
if len(close_duplicates) > 0:
for base_duplicate in close_duplicates:
if base_duplicate in self._duplicate_clusters:
self._duplicate_clusters[base_duplicate].add(code_key)
break
else:
self._duplicate_clusters[close_duplicates[0]].add(code_key)
def get_duplicate_clusters(self) -> List[List[Dict]]:
"""Export the duplicate clusters.
For each cluster, the first element is the base element of the cluster.
The base element has an estimation jaccard similarity higher than the threshold with all the other elements.
Returns:
duplicate_clusters (List[List[Dict]]):
List of duplicate clusters.
"""
duplicate_clusters = []
for base, duplicates in self._duplicate_clusters.items():
cluster = [base] + list(duplicates)
# reformat the cluster to be a list of dict
cluster = [{"base_index": el[0], "repo_name": el[1], "path": el[2]} for el in cluster]
duplicate_clusters.append(cluster)
return duplicate_clusters
def save(self, filepath) -> None:
duplicate_clusters = self.get_duplicate_clusters()
with open(filepath, "w") as f:
json.dump(duplicate_clusters, f)
def _compute_min_hash(element):
index, data = element
min_hash = get_min_hash([t for t in NON_ALPHA.split(data["content"]) if len(t.strip()) > 0])
if min_hash is not None:
return (index, data["repo_name"], data["path"]), min_hash
def minhash_iter(dataset_iterator: Type[Dataset]):
with mp.Pool() as pool:
for data in pool.imap_unordered(
_compute_min_hash,
ThreadedIterator(dataset_iterator, max_queue_size=10000),
chunksize=100,
):
if data is not None:
yield data
def make_duplicate_clusters(dataset_iterator: Type[Dataset], jaccard_threshold: float):
"""Find duplicate clusters in the dataset in two steps:
1. Compute MinHash for each code snippet. MinHash is a tool for fast jaccard similarity estimation.
This step is computed using an asynchronous multiprocessing pool, minhash_iter
2. Find duplicate clusters. The computed MinHash is added sequentially to the DuplicationIndex.
This step cannot be parallelized. So using asynchronous thread in the previous step helps to speed up the process.
"""
di = DuplicationIndex(duplication_jaccard_threshold=jaccard_threshold)
for filename, min_hash in tqdm(ThreadedIterator(minhash_iter(enumerate(dataset_iterator)), max_queue_size=100)):
di.add(filename, min_hash)
# Returns a List[Cluster] where Cluster is List[str] with the filenames.
return di.get_duplicate_clusters()
def jaccard_similarity(code1: str, code2: str) -> float:
"""Compute the Jaccard similarity of two code snippets."""
tokens1 = get_tokens(code1)
tokens2 = get_tokens(code2)
return len(tokens1 & tokens2) / len(tokens1 | tokens2)
_shared_dataset = None
def _find_cluster_extremes_shared(cluster, jaccard_threshold):
"""Find a reduced cluster such that each code in the origin cluster is similar to at least one code in the reduced cluster.
Two codes are similar if their Jaccard similarity is above the threshold.
Args:
cluster (List[dict]):
cluster is a list of dict, each dict contains the following keys:
- base_index
- repo_name
- path
This is a typical output of DuplicationIndex.get_duplicate_clusters()
jaccard_threshold (float):
threshold for Jaccard similarity.
Two codes are similar if their Jaccard similarity is above the threshold.
Returns:
extremes (List[dict]):
A reduced representation of the cluster. The field copies is added to each dict.
The copies field indicates the number of similar codes in the cluster for a extreme.
"""
extremes = []
for element1 in cluster:
code1 = _shared_dataset[element1["base_index"]]["content"]
for element2 in extremes:
code2 = _shared_dataset[element2["base_index"]]["content"]
if jaccard_similarity(code1, code2) >= jaccard_threshold:
element2["copies"] += 1
break
else:
element1["copies"] = 1
extremes.append(element1)
return extremes
def find_extremes(cluster_list, dataset, jaccard_threshold):
"""Call the _find_cluster_extremes_shared function in a parallel fashion.
Args:
cluster_list (List[List[Dict]]):
each cluster is a list of dicts with the key base_index,
referring to the index of the base code in the dataset.
dataset (Type[Dataset]):
dataset is used to access the content of the code snippets,
using the base_index from the cluster_list.
dataset is shared between all the processes using a glabal variable (any other way to share the dataset?),
otherwise the multi processing is not speeded up.
jaccard_threshold (float):
the threshold for the jaccard similarity. The default value is 0.85
Returns:
extremes_list (List[Dict]):
Each cluster is reduced to extremes.
See _find_cluster_extremes_shared for the definition of extremes.
"""
global _shared_dataset
_shared_dataset = dataset
extremes_list = []
f = partial(_find_cluster_extremes_shared, jaccard_threshold=jaccard_threshold)
with mp.Pool() as pool:
for extremes in tqdm(
pool.imap_unordered(
f,
cluster_list,
),
total=len(cluster_list),
):
extremes_list.append(extremes)
return extremes_list
def deduplicate_dataset(
dataset: Type[Dataset], jaccard_threshold: float = 0.85
) -> Tuple[Type[Dataset], List[List[Dict]]]:
"""Deduplicate the dataset using minhash and jaccard similarity.
This function first generate duplicate clusters, then each cluster
is reduced to the extremes that are similar to the other elements in the cluster.
Codes are called similar if their Jaccard similarity is greater than jaccard_threshold (0.85 default).
Args:
dataset (Type[Dataset]):
The dataset to deduplicate.
jaccard_threshold (float, default=0.85):
jaccard threshold to determine if two codes are similar
Returns:
ds_dedup (Type[Dataset]):
The deduplicated dataset.
duplicate_clusters (List[List[Dict]]):
The list of duplicate clusters.
Each cluster is a list of dicts with the following keys:
- base_index : int
The index of the code in the original dataset.
- repo_name : str
- path : str
- copies : int
The number of copies of the code in the cluster. (find_cluster_extremes)
- is_extreme : bool
Whether the code is an extreme in the cluster.
All the codes in the cluster are removed from the dataset except the extremes.
Example:
>>> from datasets import load_dataset
>>> from minhash_deduplication import deduplicate_dataset
>>> ds = load_dataset("lvwerra/codeparrot-clean", split="train")
>>> ds_dedup, duplicate_clusters = deduplicate_dataset(ds, jaccard_threshold=0.85)
"""
duplicate_clusters = make_duplicate_clusters(dataset, jaccard_threshold)
duplicate_indices = {x["base_index"] for cluster in duplicate_clusters for x in cluster}
extreme_dict = {}
extremes_clusters = find_extremes(duplicate_clusters, dataset, jaccard_threshold)
for extremes in extremes_clusters:
for element in extremes:
extreme_dict[element["base_index"]] = element
remove_indices = duplicate_indices - set(extreme_dict.keys())
ds_filter = dataset.filter(lambda x, idx: idx not in remove_indices, with_indices=True)
# update duplicate_clusters
for cluster in duplicate_clusters:
for element in cluster:
element["is_extreme"] = element["base_index"] in extreme_dict
if element["is_extreme"]:
element["copies"] = extreme_dict[element["base_index"]]["copies"]
print(f"Original dataset size: {len(dataset)}")
print(f"Number of duplicate clusters: {len(duplicate_clusters)}")
print(f"Files in duplicate cluster: {len(duplicate_indices)}")
print(f"Unique files in duplicate cluster: {len(extreme_dict)}")
print(f"Filtered dataset size: {len(ds_filter)}")
return ds_filter, duplicate_clusters
| 0 |
hf_public_repos/transformers/examples/research_projects/codeparrot
|
hf_public_repos/transformers/examples/research_projects/codeparrot/scripts/arguments.py
|
from dataclasses import dataclass, field
from typing import Optional
@dataclass
class TrainingArguments:
"""
Configuration for training model.
"""
model_ckpt: Optional[str] = field(
default="codeparrot/codeparrot", metadata={"help": "Model name or path of model to be trained."}
)
save_dir: Optional[str] = field(
default="./", metadata={"help": "Save dir where model repo is cloned and models updates are saved to."}
)
dataset_name_train: Optional[str] = field(
default="codeparrot/codeparrot-clean-train", metadata={"help": "Name or path of training dataset."}
)
dataset_name_valid: Optional[str] = field(
default="codeparrot/codeparrot-clean-valid", metadata={"help": "Name or path of validation dataset."}
)
train_batch_size: Optional[int] = field(default=2, metadata={"help": "Batch size for training."})
valid_batch_size: Optional[int] = field(default=2, metadata={"help": "Batch size for evaluation."})
weight_decay: Optional[float] = field(default=0.1, metadata={"help": "Value of weight decay."})
shuffle_buffer: Optional[int] = field(
default=10000, metadata={"help": "Size of buffer used to shuffle streaming dataset."}
)
learning_rate: Optional[float] = field(default=2e-4, metadata={"help": "Learning rate fo training."})
lr_scheduler_type: Optional[str] = field(default="cosine", metadata={"help": "Learning rate."})
num_warmup_steps: Optional[int] = field(
default=750, metadata={"help": "Number of warmup steps in the learning rate schedule."}
)
gradient_accumulation_steps: Optional[int] = field(
default=16, metadata={"help": "Number of gradient accumulation steps."}
)
gradient_checkpointing: Optional[bool] = field(
default=True, metadata={"help": "Use gradient checkpointing to reduce memory footprint."}
)
max_train_steps: Optional[int] = field(default=50000, metadata={"help": "Maximum number of training steps."})
max_eval_steps: Optional[int] = field(
default=-1, metadata={"help": "Maximum number of evaluation steps. If -1 the full dataset is evaluated."}
)
seq_length: Optional[int] = field(default=1024, metadata={"help": "Sequence lengths used for training."})
seed: Optional[int] = field(default=1, metadata={"help": "Training seed."})
save_checkpoint_steps: Optional[int] = field(
default=1024,
metadata={"help": "Interval to save checkpoints. Measured as number of forward passes not training steps."},
)
resume_from_checkpoint: Optional[str] = field(
default=None, metadata={"help": "States path if the training should continue from a checkpoint folder."}
)
tokenized: Optional[bool] = field(default=False, metadata={"help": "If True the data is pretokenized."})
@dataclass
class EvaluationArguments:
"""
Configuration for evaluating model.
"""
model_ckpt: Optional[str] = field(
default="codeparrot/codeparrot", metadata={"help": "Model name or path of model to be evaluated."}
)
dataset_name: Optional[str] = field(
default="codeparrot/codeparrot-clean-valid", metadata={"help": "Name or path of validation dataset."}
)
batch_size: Optional[int] = field(default=2, metadata={"help": "Batch size used for evaluation."})
max_eval_steps: Optional[int] = field(
default=-1, metadata={"help": "Maximum number of evaluation steps. If -1 the full dataset is evaluated."}
)
seq_length: Optional[int] = field(default=1024, metadata={"help": "Length of sequences to be evaluated."})
seed: Optional[int] = field(default=1, metadata={"help": "Random seed used for evaluation."})
@dataclass
class HumanEvalArguments:
"""
Configuration for running evaluation on HumanEval dataset.
"""
model_ckpt: Optional[str] = field(
default="codeparrot/codeparrot", metadata={"help": "Model name or path of model to be evaluated."}
)
num_workers: Optional[int] = field(default=None, metadata={"help": "Number of workers used for code evaluation."})
num_tasks: Optional[int] = field(
default=None,
metadata={"help": "The number of human-eval tasks to run. If not included all tasks are evaluated."},
)
do_sample: Optional[bool] = field(
default=True, metadata={"help": "Sample from the language model's output distribution."}
)
temperature: Optional[float] = field(default=0.2, metadata={"help": "Sampling temperature used for generation."})
max_new_tokens: Optional[int] = field(default=256, metadata={"help": "Maximum number of newly generated tokens."})
top_k: Optional[int] = field(default=0, metadata={"help": "Top-k parameter used for generation."})
top_p: Optional[float] = field(default=0.95, metadata={"help": "Top-p parameter used for nucleus sampling."})
batch_size: Optional[int] = field(default=10, metadata={"help": "Number of generations to run in parallel."})
n_samples: Optional[int] = field(
default=200, metadata={"help": "Number of completions to generate for each sample."}
)
seed: Optional[int] = field(default=1, metadata={"help": "Random seed used for evaluation."})
output_file: Optional[str] = field(
default="eval_results.json", metadata={"help": "Random seed used for evaluation."}
)
HF_ALLOW_CODE_EVAL: Optional[str] = field(
default="0", metadata={"help": "Allow `code_eval` to execute Python code on machine"}
)
device_int: Optional[int] = field(
default=-1,
metadata={
"help": (
"Determine which device to run the `text-generation` Pipeline on. -1 is CPU and any zero or positive"
" number corresponds to which GPU device id to run on."
)
},
)
@dataclass
class PreprocessingArguments:
"""
Configuration for preprocessing data.
"""
num_workers: Optional[int] = field(
default=None,
metadata={
"help": "The number of CPU cores to use for parallel preprocessing. Default uses the maximum available."
},
)
dataset_name: Optional[str] = field(
default="transformersbook/codeparrot", metadata={"help": "Folder or name of dataset to process."}
)
output_dir: Optional[str] = field(
default="codeparrot-clean", metadata={"help": "Folder to save processed processed dataset."}
)
samples_per_file: Optional[int] = field(
default=100_000, metadata={"help": "Number of files to save per JSON output file."}
)
text_column: Optional[str] = field(default="content", metadata={"help": "Column containing text data to process."})
line_max: Optional[float] = field(
default=1000, metadata={"help": "Maximum line length in file, otherwise file is filtered."}
)
line_mean: Optional[float] = field(
default=100, metadata={"help": "Maximum mean line length in file, otherwise file is filtered."}
)
alpha_frac: Optional[float] = field(
default=0.25, metadata={"help": "Maximum fraction of non-alphanumeric characters, otherwise file is filtered."}
)
min_token_ratio: Optional[float] = field(
default=1.5, metadata={"help": "Minimum character token ratio for the file, otherwise file is filtered."}
)
filter_proba: Optional[float] = field(
default=0.7, metadata={"help": "Probability for filtering config, test and uncommon files."}
)
tokenizer: Optional[str] = field(
default="codeparrot/codeparrot",
metadata={"help": "Name or path to the tokenizer."},
)
near_deduplication: Optional[bool] = field(
default=False, metadata={"help": "If True, near-duplicate samples are removed."}
)
jaccard_threshold: Optional[float] = field(
default=0.85, metadata={"help": "Jaccard threshold for near-duplicate samples."}
)
@dataclass
class TokenizerTrainingArguments:
"""
Configuration for tokenizer training.
"""
base_tokenizer: Optional[str] = field(
default="gpt2", metadata={"help": "Base tokenizer to build new tokenizer from."}
)
dataset_name: Optional[str] = field(
default="transformersbook/codeparrot-train", metadata={"help": "Dataset to train tokenizer on."}
)
text_column: Optional[str] = field(default="content", metadata={"help": "Column containing text data to process."})
vocab_size: Optional[int] = field(default=200_000, metadata={"help": "Number of examples to train tokenizer on."})
n_examples: Optional[int] = field(
default=32768, metadata={"help": "Number of examples to train the tokenizer on."}
)
tokenizer_name: Optional[str] = field(default="codeparrot", metadata={"help": "Name of new tokenizer."})
push_to_hub: Optional[bool] = field(default=True, metadata={"help": "Push saved tokenizer to the hub."})
@dataclass
class PretokenizationArguments:
"""
Configuration for data pretokenization.
"""
tokenizer_dir: Optional[str] = field(
default="codeparrot/codeparrot", metadata={"help": "Name or path to the tokenizer."}
)
dataset_name: Optional[str] = field(
default="codeparrot/codeparrot-clean-train", metadata={"help": "Name or path to the dataset to pretokenize."}
)
tokenized_data_repo: Optional[str] = field(
default="tokenized-codeparrot-train", metadata={"help": "Repo name of the pretokenized data."}
)
num_workers: Optional[int] = field(default=None, metadata={"help": "Number of workers used for code evaluation."})
@dataclass
class InitializationArguments:
"""
Configuration for initializing new model.
"""
config_name: Optional[str] = field(
default="gpt2-large", metadata={"help": "Configuration to use for model initialization."}
)
tokenizer_name: Optional[str] = field(
default="codeparrot/codeparrot", metadata={"help": "Tokenizer attached to model."}
)
model_name: Optional[str] = field(default="codeparrot", metadata={"help": "Name of the created model."})
push_to_hub: Optional[bool] = field(default=True, metadata={"help": "Push saved tokenizer to the hub."})
| 0 |
hf_public_repos/transformers/examples/research_projects/codeparrot/scripts
|
hf_public_repos/transformers/examples/research_projects/codeparrot/scripts/tests/test_deduplicate.py
|
from unittest import TestCase
from datasets import Dataset
from minhash_deduplication import deduplicate_dataset, make_duplicate_clusters
def get_dataset():
data_dict = {
"repo_name": ["test_repo1", "test_repo2", "test_repo3"],
"path": ["test_1.py", "test_2.py", "unit_test.py"],
"content": ["a " * 20, "a " * 30, "b " * 7],
}
dataset = Dataset.from_dict(data_dict)
return dataset
class MakeDuplicateClustersTest(TestCase):
def test_make_duplicate_clusters(self):
ds = get_dataset()
duplicate_clusters = make_duplicate_clusters(ds, 0.85)
self.assertEqual(len(duplicate_clusters[0]), 2)
def test_deduplicate_dataset(self):
ds = get_dataset()
ds_filter, duplicate_clusters = deduplicate_dataset(ds)
self.assertEqual(len(ds_filter), 2)
print(duplicate_clusters)
self.assertEqual(duplicate_clusters[0][0]["copies"], 2)
self.assertEqual(duplicate_clusters[0][0]["is_extreme"], True)
| 0 |
hf_public_repos/transformers/examples/research_projects/codeparrot
|
hf_public_repos/transformers/examples/research_projects/codeparrot/examples/train_complexity_predictor.py
|
import argparse
from copy import deepcopy
import numpy as np
from datasets import ClassLabel, DatasetDict, load_dataset
from evaluate import load
from transformers import (
AutoModelForSequenceClassification,
AutoTokenizer,
DataCollatorWithPadding,
Trainer,
TrainerCallback,
TrainingArguments,
set_seed,
)
def get_args():
parser = argparse.ArgumentParser()
parser.add_argument("--model_ckpt", type=str, default="microsoft/unixcoder-base-nine")
parser.add_argument("--num_epochs", type=int, default=5)
parser.add_argument("--batch_size", type=int, default=6)
parser.add_argument("--gradient_accumulation_steps", type=int, default=1)
parser.add_argument("--freeze", type=bool, default=True)
parser.add_argument("--learning_rate", type=float, default=5e-4)
parser.add_argument("--seed", type=int, default=0)
parser.add_argument("--lr_scheduler_type", type=str, default="cosine")
parser.add_argument("--num_warmup_steps", type=int, default=10)
parser.add_argument("--weight_decay", type=float, default=0.01)
parser.add_argument("--output_dir", type=str, default="./results")
return parser.parse_args()
metric = load("accuracy")
def compute_metrics(eval_pred):
predictions, labels = eval_pred
predictions = np.argmax(predictions, axis=1)
return metric.compute(predictions=predictions, references=labels)
class CustomCallback(TrainerCallback):
def __init__(self, trainer) -> None:
super().__init__()
self._trainer = trainer
def on_epoch_end(self, args, state, control, **kwargs):
if control.should_evaluate:
control_copy = deepcopy(control)
self._trainer.evaluate(eval_dataset=self._trainer.train_dataset, metric_key_prefix="train")
return control_copy
def main():
args = get_args()
set_seed(args.seed)
dataset = load_dataset("codeparrot/codecomplex", split="train")
train_test = dataset.train_test_split(test_size=0.2)
test_validation = train_test["test"].train_test_split(test_size=0.5)
train_test_validation = DatasetDict(
{
"train": train_test["train"],
"test": test_validation["train"],
"valid": test_validation["test"],
}
)
print("Loading tokenizer and model")
tokenizer = AutoTokenizer.from_pretrained(args.model_ckpt)
tokenizer.pad_token = tokenizer.eos_token
model = AutoModelForSequenceClassification.from_pretrained(args.model_ckpt, num_labels=7)
model.config.pad_token_id = model.config.eos_token_id
if args.freeze:
for param in model.roberta.parameters():
param.requires_grad = False
labels = ClassLabel(num_classes=7, names=list(set(train_test_validation["train"]["complexity"])))
def tokenize(example):
inputs = tokenizer(example["src"], truncation=True, max_length=1024)
label = labels.str2int(example["complexity"])
return {
"input_ids": inputs["input_ids"],
"attention_mask": inputs["attention_mask"],
"label": label,
}
tokenized_datasets = train_test_validation.map(
tokenize,
batched=True,
remove_columns=train_test_validation["train"].column_names,
)
data_collator = DataCollatorWithPadding(tokenizer=tokenizer)
training_args = TrainingArguments(
output_dir=args.output_dir,
learning_rate=args.learning_rate,
lr_scheduler_type=args.lr_scheduler_type,
evaluation_strategy="epoch",
save_strategy="epoch",
logging_strategy="epoch",
per_device_train_batch_size=args.batch_size,
per_device_eval_batch_size=args.batch_size,
num_train_epochs=args.num_epochs,
gradient_accumulation_steps=args.gradient_accumulation_steps,
weight_decay=0.01,
metric_for_best_model="accuracy",
run_name="complexity-java",
report_to="wandb",
)
trainer = Trainer(
model=model,
args=training_args,
train_dataset=tokenized_datasets["train"],
eval_dataset=tokenized_datasets["valid"],
tokenizer=tokenizer,
data_collator=data_collator,
compute_metrics=compute_metrics,
)
print("Training...")
trainer.add_callback(CustomCallback(trainer))
trainer.train()
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects/codeparrot
|
hf_public_repos/transformers/examples/research_projects/codeparrot/examples/README.md
|
# Examples
In this folder we showcase some examples to use code models for downstream tasks.
## Complexity prediction
In this task we want to predict the complexity of Java programs in [CodeComplex](https://huggingface.co/datasets/codeparrot/codecomplex) dataset. Using Hugging Face `trainer`, we finetuned [multilingual CodeParrot](https://huggingface.co/codeparrot/codeparrot-small-multi) and [UniXcoder](https://huggingface.co/microsoft/unixcoder-base-nine) on it, and we used the latter to build this Java complexity prediction [space](https://huggingface.co/spaces/codeparrot/code-complexity-predictor) on Hugging Face hub.
To fine-tune a model on this dataset you can use the following commands:
```python
python train_complexity_predictor.py \
--model_ckpt microsoft/unixcoder-base-nine \
--num_epochs 60 \
--num_warmup_steps 10 \
--batch_size 8 \
--learning_rate 5e-4
```
## Code generation: text to python
In this task we want to train a model to generate code from english text. We finetuned Codeparrot-small on [github-jupyter-text-to-code](https://huggingface.co/datasets/codeparrot/github-jupyter-text-to-code), a dataset where the samples are a succession of docstrings and their Python code, originally extracted from Jupyter notebooks parsed in this [dataset](https://huggingface.co/datasets/codeparrot/github-jupyter-parsed).
To fine-tune a model on this dataset we use the same [script](https://github.com/huggingface/transformers/blob/main/examples/research_projects/codeparrot/scripts/codeparrot_training.py) as the pretraining of codeparrot:
```python
accelerate launch scripts/codeparrot_training.py \
--model_ckpt codeparrot/codeparrot-small \
--dataset_name_train codeparrot/github-jupyter-text-to-code \
--dataset_name_valid codeparrot/github-jupyter-text-to-code \
--train_batch_size 12 \
--valid_batch_size 12 \
--learning_rate 5e-4 \
--num_warmup_steps 100 \
--gradient_accumulation 1 \
--gradient_checkpointing False \
--max_train_steps 3000 \
--save_checkpoint_steps 200 \
--save_dir jupyter-text-to-python
```
## Code explanation: python to text
In this task we want to train a model to explain python code. We finetuned Codeparrot-small on [github-jupyter-code-to-text](https://huggingface.co/datasets/codeparrot/github-jupyter-code-to-text), a dataset where the samples are a succession of Python code and its explanation as a docstring, we just inverted the order of text and code pairs in github-jupyter-code-to-text dataset and added the delimiters "Explanation:" and "End of explanation" inside the doctrings.
To fine-tune a model on this dataset we use the same [script](https://github.com/huggingface/transformers/blob/main/examples/research_projects/codeparrot/scripts/codeparrot_training.py) as the pretraining of codeparrot:
```python
accelerate launch scripts/codeparrot_training.py \
--model_ckpt codeparrot/codeparrot-small \
--dataset_name_train codeparrot/github-jupyter-code-to-text \
--dataset_name_valid codeparrot/github-jupyter-code-to-text \
--train_batch_size 12 \
--valid_batch_size 12 \
--learning_rate 5e-4 \
--num_warmup_steps 100 \
--gradient_accumulation 1 \
--gradient_checkpointing False \
--max_train_steps 3000 \
--save_checkpoint_steps 200 \
--save_dir jupyter-python-to-text
```
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hf_public_repos/transformers/examples/research_projects/codeparrot/examples/requirements.txt
|
datasets==2.3.2
transformers==4.21.1
wandb==0.13.1
evaluate==0.2.2
scikit-learn==1.1.2
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hf_public_repos/transformers/examples/research_projects
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hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/callbacks_rag.py
|
import logging
from pathlib import Path
import numpy as np
import pytorch_lightning as pl
import torch
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from pytorch_lightning.utilities import rank_zero_only
from utils_rag import save_json
def count_trainable_parameters(model):
model_parameters = filter(lambda p: p.requires_grad, model.parameters())
params = sum([np.prod(p.size()) for p in model_parameters])
return params
logger = logging.getLogger(__name__)
def get_checkpoint_callback(output_dir, metric):
"""Saves the best model by validation EM score."""
if metric == "rouge2":
exp = "{val_avg_rouge2:.4f}-{step_count}"
elif metric == "bleu":
exp = "{val_avg_bleu:.4f}-{step_count}"
elif metric == "em":
exp = "{val_avg_em:.4f}-{step_count}"
elif metric == "loss":
exp = "{val_avg_loss:.4f}-{step_count}"
else:
raise NotImplementedError(
f"seq2seq callbacks only support rouge2 and bleu, got {metric}, You can make your own by adding to this"
" function."
)
checkpoint_callback = ModelCheckpoint(
dirpath=output_dir,
filename=exp,
monitor=f"val_{metric}",
mode="max",
save_top_k=1,
every_n_epochs=1, # works only with PL > 1.3
)
return checkpoint_callback
def get_early_stopping_callback(metric, patience):
return EarlyStopping(
monitor=f"val_{metric}", # does this need avg?
mode="min" if "loss" in metric else "max",
patience=patience,
verbose=True,
)
class Seq2SeqLoggingCallback(pl.Callback):
def on_batch_end(self, trainer, pl_module):
lrs = {f"lr_group_{i}": param["lr"] for i, param in enumerate(pl_module.trainer.optimizers[0].param_groups)}
pl_module.logger.log_metrics(lrs)
@rank_zero_only
def _write_logs(
self, trainer: pl.Trainer, pl_module: pl.LightningModule, type_path: str, save_generations=True
) -> None:
logger.info(f"***** {type_path} results at step {trainer.global_step:05d} *****")
metrics = trainer.callback_metrics
trainer.logger.log_metrics({k: v for k, v in metrics.items() if k not in ["log", "progress_bar", "preds"]})
# Log results
od = Path(pl_module.hparams.output_dir)
if type_path == "test":
results_file = od / "test_results.txt"
generations_file = od / "test_generations.txt"
else:
# this never gets hit. I prefer not to save intermediate generations, and results are in metrics.json
# If people want this it will be easy enough to add back.
results_file = od / f"{type_path}_results/{trainer.global_step:05d}.txt"
generations_file = od / f"{type_path}_generations/{trainer.global_step:05d}.txt"
results_file.parent.mkdir(exist_ok=True)
generations_file.parent.mkdir(exist_ok=True)
with open(results_file, "a+") as writer:
for key in sorted(metrics):
if key in ["log", "progress_bar", "preds"]:
continue
val = metrics[key]
if isinstance(val, torch.Tensor):
val = val.item()
msg = f"{key}: {val:.6f}\n"
writer.write(msg)
if not save_generations:
return
if "preds" in metrics:
content = "\n".join(metrics["preds"])
generations_file.open("w+").write(content)
@rank_zero_only
def on_train_start(self, trainer, pl_module):
try:
npars = pl_module.model.model.num_parameters()
except AttributeError:
npars = pl_module.model.num_parameters()
n_trainable_pars = count_trainable_parameters(pl_module)
# mp stands for million parameters
trainer.logger.log_metrics({"n_params": npars, "mp": npars / 1e6, "grad_mp": n_trainable_pars / 1e6})
@rank_zero_only
def on_test_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
save_json(pl_module.metrics, pl_module.metrics_save_path)
return self._write_logs(trainer, pl_module, "test")
@rank_zero_only
def on_validation_end(self, trainer: pl.Trainer, pl_module):
save_json(pl_module.metrics, pl_module.metrics_save_path)
# Uncommenting this will save val generations
# return self._write_logs(trainer, pl_module, "valid")
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hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/utils_rag.py
|
import itertools
import json
import linecache
import os
import pickle
import re
import socket
import string
from collections import Counter
from logging import getLogger
from pathlib import Path
from typing import Callable, Dict, Iterable, List
import git
import torch
from torch.utils.data import Dataset
from transformers import BartTokenizer, RagTokenizer, T5Tokenizer
def encode_line(tokenizer, line, max_length, padding_side, pad_to_max_length=True, return_tensors="pt"):
extra_kw = {"add_prefix_space": True} if isinstance(tokenizer, BartTokenizer) and not line.startswith(" ") else {}
tokenizer.padding_side = padding_side
return tokenizer(
[line],
max_length=max_length,
padding="max_length" if pad_to_max_length else None,
truncation=True,
return_tensors=return_tensors,
add_special_tokens=True,
**extra_kw,
)
def trim_batch(
input_ids,
pad_token_id,
attention_mask=None,
):
"""Remove columns that are populated exclusively by pad_token_id"""
keep_column_mask = input_ids.ne(pad_token_id).any(dim=0)
if attention_mask is None:
return input_ids[:, keep_column_mask]
else:
return (input_ids[:, keep_column_mask], attention_mask[:, keep_column_mask])
class Seq2SeqDataset(Dataset):
def __init__(
self,
tokenizer,
data_dir,
max_source_length,
max_target_length,
type_path="train",
n_obs=None,
src_lang=None,
tgt_lang=None,
prefix="",
):
super().__init__()
self.src_file = Path(data_dir).joinpath(type_path + ".source")
self.tgt_file = Path(data_dir).joinpath(type_path + ".target")
self.src_lens = self.get_char_lens(self.src_file)
self.max_source_length = max_source_length
self.max_target_length = max_target_length
assert min(self.src_lens) > 0, f"found empty line in {self.src_file}"
self.tokenizer = tokenizer
self.prefix = prefix
if n_obs is not None:
self.src_lens = self.src_lens[:n_obs]
self.src_lang = src_lang
self.tgt_lang = tgt_lang
def __len__(self):
return len(self.src_lens)
def __getitem__(self, index) -> Dict[str, torch.Tensor]:
index = index + 1 # linecache starts at 1
source_line = self.prefix + linecache.getline(str(self.src_file), index).rstrip("\n")
tgt_line = linecache.getline(str(self.tgt_file), index).rstrip("\n")
assert source_line, f"empty source line for index {index}"
assert tgt_line, f"empty tgt line for index {index}"
# Need to add eos token manually for T5
if isinstance(self.tokenizer, T5Tokenizer):
source_line += self.tokenizer.eos_token
tgt_line += self.tokenizer.eos_token
# Pad source and target to the right
source_tokenizer = (
self.tokenizer.question_encoder if isinstance(self.tokenizer, RagTokenizer) else self.tokenizer
)
target_tokenizer = self.tokenizer.generator if isinstance(self.tokenizer, RagTokenizer) else self.tokenizer
source_inputs = encode_line(source_tokenizer, source_line, self.max_source_length, "right")
target_inputs = encode_line(target_tokenizer, tgt_line, self.max_target_length, "right")
source_ids = source_inputs["input_ids"].squeeze()
target_ids = target_inputs["input_ids"].squeeze()
src_mask = source_inputs["attention_mask"].squeeze()
return {
"input_ids": source_ids,
"attention_mask": src_mask,
"decoder_input_ids": target_ids,
}
@staticmethod
def get_char_lens(data_file):
return [len(x) for x in Path(data_file).open().readlines()]
def collate_fn(self, batch) -> Dict[str, torch.Tensor]:
input_ids = torch.stack([x["input_ids"] for x in batch])
masks = torch.stack([x["attention_mask"] for x in batch])
target_ids = torch.stack([x["decoder_input_ids"] for x in batch])
tgt_pad_token_id = (
self.tokenizer.generator.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
src_pad_token_id = (
self.tokenizer.question_encoder.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
y = trim_batch(target_ids, tgt_pad_token_id)
source_ids, source_mask = trim_batch(input_ids, src_pad_token_id, attention_mask=masks)
batch = {
"input_ids": source_ids,
"attention_mask": source_mask,
"decoder_input_ids": y,
}
return batch
logger = getLogger(__name__)
def flatten_list(summary_ids: List[List]):
return list(itertools.chain.from_iterable(summary_ids))
def save_git_info(folder_path: str) -> None:
"""Save git information to output_dir/git_log.json"""
repo_infos = get_git_info()
save_json(repo_infos, os.path.join(folder_path, "git_log.json"))
def save_json(content, path, indent=4, **json_dump_kwargs):
with open(path, "w") as f:
json.dump(content, f, indent=indent, **json_dump_kwargs)
def load_json(path):
with open(path) as f:
return json.load(f)
def get_git_info():
repo = git.Repo(search_parent_directories=True)
repo_infos = {
"repo_id": str(repo),
"repo_sha": str(repo.head.object.hexsha),
"repo_branch": str(repo.active_branch),
"hostname": str(socket.gethostname()),
}
return repo_infos
def lmap(f: Callable, x: Iterable) -> List:
"""list(map(f, x))"""
return list(map(f, x))
def pickle_save(obj, path):
"""pickle.dump(obj, path)"""
with open(path, "wb") as f:
return pickle.dump(obj, f)
def normalize_answer(s):
"""Lower text and remove punctuation, articles and extra whitespace."""
def remove_articles(text):
return re.sub(r"\b(a|an|the)\b", " ", text)
def white_space_fix(text):
return " ".join(text.split())
def remove_punc(text):
exclude = set(string.punctuation)
return "".join(ch for ch in text if ch not in exclude)
def lower(text):
return text.lower()
return white_space_fix(remove_articles(remove_punc(lower(s))))
def f1_score(prediction, ground_truth):
prediction_tokens = normalize_answer(prediction).split()
ground_truth_tokens = normalize_answer(ground_truth).split()
common = Counter(prediction_tokens) & Counter(ground_truth_tokens)
num_same = sum(common.values())
if num_same == 0:
return 0
precision = 1.0 * num_same / len(prediction_tokens)
recall = 1.0 * num_same / len(ground_truth_tokens)
f1 = (2 * precision * recall) / (precision + recall)
return f1
def exact_match_score(prediction, ground_truth):
return normalize_answer(prediction) == normalize_answer(ground_truth)
def calculate_exact_match(output_lns: List[str], reference_lns: List[str]) -> Dict:
assert len(output_lns) == len(reference_lns)
em = 0
for hypo, pred in zip(output_lns, reference_lns):
em += exact_match_score(hypo, pred)
if len(output_lns) > 0:
em /= len(output_lns)
return {"em": em}
def is_rag_model(model_prefix):
return model_prefix.startswith("rag")
def set_extra_model_params(extra_params, hparams, config):
equivalent_param = {p: p for p in extra_params}
# T5 models don't have `dropout` param, they have `dropout_rate` instead
equivalent_param["dropout"] = "dropout_rate"
for p in extra_params:
if getattr(hparams, p, None):
if not hasattr(config, p) and not hasattr(config, equivalent_param[p]):
logger.info("config doesn't have a `{}` attribute".format(p))
delattr(hparams, p)
continue
set_p = p if hasattr(config, p) else equivalent_param[p]
setattr(config, set_p, getattr(hparams, p))
delattr(hparams, p)
return hparams, config
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hf_public_repos/transformers/examples/research_projects
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hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/README.md
|
# End-to-End finetuning of RAG (including DPR retriever) for Question Answering.
This finetuning script is actively maintained by [Shamane Siri](https://github.com/shamanez). Feel free to ask questions on the [Forum](https://discuss.huggingface.co/) or post an issue on [GitHub](https://github.com/huggingface/transformers/issues/new/choose) and tag @shamanez.
Others that helped out: Patrick von Platen (@patrickvonplaten), Quentin Lhoest (@lhoestq), and Rivindu Weerasekera (@rivinduw)
The original RAG implementation is able to train the question encoder and generator end-to-end.
This extension enables complete end-to-end training of RAG including the context encoder in the retriever component.
Please read the [accompanying blog post](https://shamanesiri.medium.com/how-to-finetune-the-entire-rag-architecture-including-dpr-retriever-4b4385322552) for details on this implementation.
The original RAG code has also been modified to work with the latest versions of pytorch lightning (version 1.2.10) and RAY (version 1.3.0). All other implementation details remain the same as the [original RAG code](https://github.com/huggingface/transformers/tree/main/examples/research_projects/rag).
Read more about RAG at https://arxiv.org/abs/2005.11401.
This code can be modified to experiment with other research on retrival augmented models which include training of the retriever (e.g. [REALM](https://arxiv.org/abs/2002.08909) and [MARGE](https://arxiv.org/abs/2006.15020)).
To start training, use the bash script (finetune_rag_ray_end2end.sh) in this folder. This script also includes descriptions on each command-line argument used.
# Latest Update
⚠️ Updated the rag-end2end-retriever to be compatible with PL==1.6.4 and RAY==1.13.0 (latest versions to the date 2022-June-11)
# Note
⚠️ This project should be run with pytorch-lightning==1.3.1 which has a potential security vulnerability
# Testing
The following two bash scripts can be used to quickly test the implementation.
1. sh ./test_run/test_finetune.sh script
- Tests the full end-to-end fine-tuning ability with a dummy knowlendge-base and dummy training dataset (check test_dir directory).
- Users can replace the dummy dataset and knowledge-base with their own to do their own finetuning.
- Please read the comments in the test_finetune.sh file.
2. sh ./test_run/test_rag_new_features.sh
- Tests the newly added functions (set_context_encoder and set_context_encoder_tokenizer) related to modeling rag.
- This is sufficient to check the model's ability to use the set functions correctly.
# Comparison of end2end RAG (including DPR finetuning) VS original-RAG
We conducted a simple experiment to investigate the effectiveness of this end2end training extension using the SQuAD dataset. Please execute the following steps to reproduce the results.
- Create a knowledge-base using all the context passages in the SQuAD dataset with their respective titles.
- Use the question-answer pairs as training data.
- Train the system for 10 epochs.
- Test the Exact Match (EM) score with the SQuAD dataset's validation set.
- Training dataset, the knowledge-base, and hyperparameters used in experiments can be accessed from [here](https://drive.google.com/drive/folders/1qyzV-PaEARWvaU_jjpnU_NUS3U_dSjtG?usp=sharing).
# Results
- We train both models for 10 epochs.
| Model Type | EM-Score|
| --------------------| --------|
| RAG-original | 28.12 |
| RAG-end2end with DPR| 40.02 |
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hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/kb_encode_utils.py
|
import os
from functools import partial
from glob import glob
import faiss
from datasets import Features, Sequence, Value, concatenate_datasets, load_dataset, load_from_disk
from transformers import DPRContextEncoder, DPRContextEncoderTokenizerFast
def split_text(text, n=100, character=" "):
"""Split the text every ``n``-th occurrence of ``character``"""
text = text.split(character)
return [character.join(text[i : i + n]).strip() for i in range(0, len(text), n)]
def split_documents(documents):
"""Split documents into passages"""
titles, texts = [], []
for title, text in zip(documents["title"], documents["text"]):
if text is not None:
for passage in split_text(text):
titles.append(title if title is not None else "")
texts.append(passage)
return {"title": titles, "text": texts}
def embed_update(ctx_encoder, total_processes, device, process_num, shard_dir, csv_path):
kb_dataset = load_dataset(
"csv", data_files=[csv_path], split="train", delimiter="\t", column_names=["title", "text"]
)
kb_dataset = kb_dataset.map(
split_documents, batched=True, num_proc=1
) # if you want you can load already splitted csv.
kb_list = [kb_dataset.shard(total_processes, i, contiguous=True) for i in range(total_processes)]
data_shrad = kb_list[process_num]
arrow_folder = "data_" + str(process_num)
passages_path = os.path.join(shard_dir, arrow_folder)
context_tokenizer = DPRContextEncoderTokenizerFast.from_pretrained("facebook/dpr-ctx_encoder-multiset-base")
ctx_encoder = ctx_encoder.to(device=device)
def embed(
documents: dict, ctx_encoder: DPRContextEncoder, ctx_tokenizer: DPRContextEncoderTokenizerFast, device
) -> dict:
"""Compute the DPR embeddings of document passages"""
input_ids = ctx_tokenizer(
documents["title"], documents["text"], truncation=True, padding="longest", return_tensors="pt"
)["input_ids"]
embeddings = ctx_encoder(input_ids.to(device=device), return_dict=True).pooler_output
return {"embeddings": embeddings.detach().cpu().numpy()}
new_features = Features(
{"text": Value("string"), "title": Value("string"), "embeddings": Sequence(Value("float32"))}
) # optional, save as float32 instead of float64 to save space
dataset = data_shrad.map(
partial(embed, ctx_encoder=ctx_encoder, ctx_tokenizer=context_tokenizer, device=device),
batched=True,
batch_size=16,
features=new_features,
)
dataset.save_to_disk(passages_path)
def add_index(shard_dir, index_path):
data_shard_list = []
for shard_address in glob(str(shard_dir) + "/*/"):
data_shard_list.append(load_from_disk(shard_address))
concat = concatenate_datasets(data_shard_list)
faiss.omp_set_num_threads(96)
index = faiss.IndexHNSWFlat(768, 128, faiss.METRIC_INNER_PRODUCT)
concat.add_faiss_index("embeddings", custom_index=index)
concat.get_index("embeddings").save(
index_path
) # since we load the index in to memory,we can directly update the index in the disk
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hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/finetune_rag_ray_end2end.sh
|
# Sample script to finetune RAG using Ray for distributed retrieval.
# Add parent directory to python path to access lightning_base.py
export PYTHONPATH="../":"${PYTHONPATH}"
#creates the custom knowlegebase
python use_own_knowledge_dataset.py \
--csv_path /DIR/SQUAD-KB/squad-kb.csv \
--output_dir /DIR/SQUAD-KB
# Start a single-node Ray cluster.
ray start --head
# A sample finetuning run, you need to specify data_dir, output_dir and model_name_or_path
# run ./examples/rag/finetune_rag_ray.sh --help to see all the possible options
python finetune_rag.py \
--data_dir /DIR/squad-training-data \
--output_dir /DIR/model_checkpoints \
--model_name_or_path facebook/rag-token-base \
--model_type rag_token \
--fp16 \
--gpus 2 \
--profile \
--do_train \
--end2end \
--do_predict \
--n_val -1 \
--train_batch_size 4 \
--eval_batch_size 1 \
--max_source_length 128 \
--max_target_length 25 \
--val_max_target_length 25 \
--test_max_target_length 25 \
--label_smoothing 0.1 \
--dropout 0.1 \
--attention_dropout 0.1 \
--weight_decay 0.001 \
--adam_epsilon 1e-08 \
--max_grad_norm 0.1 \
--lr_scheduler polynomial \
--learning_rate 3e-05 \
--num_train_epochs 10 \
--warmup_steps 500 \
--gradient_accumulation_steps 8 \
--distributed_retriever ray \
--num_retrieval_workers 4 \
--passages_path /DIR/SQUAD-KB/my_knowledge_dataset \
--index_path /DIR/SQUAD-KB/my_knowledge_dataset_hnsw_index.faiss \
--index_name custom \
--context_encoder_name facebook/dpr-ctx_encoder-multiset-base \
--csv_path /DIR/SQUAD-KB/squad-kb.csv \
--index_gpus 1 \
--gpu_order [5,6,7,8,9,0,1,2,3,4] \
--shard_dir ./test_dir/kb-shards \
--indexing_freq 500
# Stop the Ray cluster.
ray stop
#this script was used to test the SQuAD data.
#change the dir paramater acording to your prefernece.
#please use the same device ordere when running CUDA_VISIBLE_DEVICES=5,6,7,8,9,0,1,2,3,4 sh finetune_rag_ray_end2end.sh
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hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/distributed_ray_retriever.py
|
import logging
import random
import ray
from transformers import RagConfig, RagRetriever, RagTokenizer
from transformers.models.rag.retrieval_rag import CustomHFIndex
logger = logging.getLogger(__name__)
class RayRetriever:
def __init__(self):
self.initialized = False
def create_rag_retriever(self, config, question_encoder_tokenizer, generator_tokenizer, index):
if not self.initialized:
self.retriever = RagRetriever(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
index=index,
init_retrieval=False,
)
self.initialized = True
def init_retrieval(self):
self.retriever.index.init_index()
def clear_object(self):
# delete the old self.retriever object before assigning the new index
del self.retriever
self.initialized = False
def retrieve(self, question_hidden_states, n_docs):
doc_ids, retrieved_doc_embeds = self.retriever._main_retrieve(question_hidden_states, n_docs)
doc_dicts = self.retriever.index.get_doc_dicts(doc_ids)
return doc_ids, retrieved_doc_embeds, doc_dicts
class RagRayDistributedRetriever(RagRetriever):
"""
A distributed retriever built on top of the ``Ray`` API, a library
for building distributed applications (https://docs.ray.io/en/master/).
package. During training, all training workers initialize their own
instance of a `RagRayDistributedRetriever`, and each instance of
this distributed retriever shares a common set of Retrieval Ray
Actors (https://docs.ray.io/en/master/walkthrough.html#remote
-classes-actors) that load the index on separate processes. Ray
handles the communication between the `RagRayDistributedRetriever`
instances and the remote Ray actors. If training is done in a
non-distributed setup, the index will simply be loaded in the same
process as the training worker and Ray will not be used.
Args:
config (:class:`~transformers.RagConfig`):
The configuration of the RAG model this Retriever is used with. Contains parameters indicating which ``Index`` to build.
question_encoder_tokenizer (:class:`~transformers.PreTrainedTokenizer`):
The tokenizer that was used to tokenize the question.
It is used to decode the question and then use the generator_tokenizer.
generator_tokenizer (:class:`~transformers.PreTrainedTokenizer`):
The tokenizer used for the generator part of the RagModel.
retrieval_workers (:obj:`List[ray.ActorClass(RayRetriever)]`): A list of already initialized `RayRetriever` actors.
These actor classes run on remote processes and are responsible for performing the index lookup.
index (:class:`~transformers.retrieval_rag.Index`, optional, defaults to the one defined by the configuration):
If specified, use this index instead of the one built using the configuration
"""
def __init__(self, config, question_encoder_tokenizer, generator_tokenizer, retrieval_workers, index=None):
if index is not None and index.is_initialized() and len(retrieval_workers) > 0:
raise ValueError(
"When using Ray for distributed fine-tuning, "
"you'll need to provide the paths instead, "
"as the dataset and the index are loaded "
"separately. More info in examples/rag/use_own_knowledge_dataset.py "
)
super().__init__(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
index=index,
init_retrieval=False,
)
self.retrieval_workers = retrieval_workers
self.question_encoder_tokenizer = question_encoder_tokenizer
self.generator_tokenizer = generator_tokenizer
if len(self.retrieval_workers) > 0:
ray.get(
[
worker.create_rag_retriever.remote(config, question_encoder_tokenizer, generator_tokenizer, index)
for worker in self.retrieval_workers
]
)
def init_retrieval(self):
"""
Retriever initialization function, needs to be called from the
training process. This function triggers retrieval initialization
for all retrieval actors if using distributed setting, or loads
index into current process if training is not distributed.
"""
logger.info("initializing retrieval")
if len(self.retrieval_workers) > 0:
ray.get([worker.init_retrieval.remote() for worker in self.retrieval_workers])
else:
# Non-distributed training. Load index into this same process.
self.index.init_index()
def retrieve(self, question_hidden_states, n_docs):
"""
Retrieves documents for specified ``question_hidden_states``. If
running training with multiple workers, a random retrieval actor is
selected to perform the index lookup and return the result.
Args:
question_hidden_states (:obj:`np.ndarray` of shape :obj:`(batch_size, vector_size)`):
A batch of query vectors to retrieve with.
n_docs (:obj:`int`):
The number of docs retrieved per query.
Output:
retrieved_doc_embeds (:obj:`np.ndarray` of shape :obj:`(batch_size, n_docs, dim)`
The retrieval embeddings of the retrieved docs per query.
doc_ids (:obj:`np.ndarray` of shape :obj:`batch_size, n_docs`)
The ids of the documents in the index
doc_dicts (:obj:`List[dict]`):
The retrieved_doc_embeds examples per query.
"""
if len(self.retrieval_workers) > 0:
# Select a random retrieval actor.
random_worker = self.retrieval_workers[random.randint(0, len(self.retrieval_workers) - 1)]
doc_ids, retrieved_doc_embeds, doc_dicts = ray.get(
random_worker.retrieve.remote(question_hidden_states, n_docs)
)
else:
doc_ids, retrieved_doc_embeds = self._main_retrieve(question_hidden_states, n_docs)
doc_dicts = self.index.get_doc_dicts(doc_ids)
return retrieved_doc_embeds, doc_ids, doc_dicts
@classmethod
def get_tokenizers(cls, retriever_name_or_path, indexed_dataset=None, **kwargs):
return super(RagRayDistributedRetriever, cls).get_tokenizers(retriever_name_or_path, indexed_dataset, **kwargs)
@classmethod
def from_pretrained(cls, retriever_name_or_path, actor_handles, indexed_dataset=None, **kwargs):
config = kwargs.pop("config", None) or RagConfig.from_pretrained(retriever_name_or_path, **kwargs)
rag_tokenizer = RagTokenizer.from_pretrained(retriever_name_or_path, config=config)
question_encoder_tokenizer = rag_tokenizer.question_encoder
generator_tokenizer = rag_tokenizer.generator
if indexed_dataset is not None:
config.index_name = "custom"
index = CustomHFIndex(config.retrieval_vector_size, indexed_dataset)
else:
index = cls._build_index(config)
return cls(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
retrieval_workers=actor_handles,
index=index,
)
def re_load(self):
logger.info("re-loading the new dataset with embeddings")
# access from the training loop
ray.get([worker.clear_object.remote() for worker in self.retrieval_workers])
# build the index object again
index = self._build_index(self.config)
ray.get(
[
worker.create_rag_retriever.remote(
self.config, self.question_encoder_tokenizer, self.generator_tokenizer, index
)
for worker in self.retrieval_workers
]
)
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/lightning_base.py
|
import argparse
import logging
import os
from pathlib import Path
from typing import Any, Dict
import pytorch_lightning as pl
from pytorch_lightning.utilities import rank_zero_info
from transformers import (
AdamW,
AutoConfig,
AutoModel,
AutoModelForPreTraining,
AutoModelForQuestionAnswering,
AutoModelForSeq2SeqLM,
AutoModelForSequenceClassification,
AutoModelForTokenClassification,
AutoModelWithLMHead,
AutoTokenizer,
PretrainedConfig,
PreTrainedTokenizer,
)
from transformers.optimization import (
Adafactor,
get_cosine_schedule_with_warmup,
get_cosine_with_hard_restarts_schedule_with_warmup,
get_linear_schedule_with_warmup,
get_polynomial_decay_schedule_with_warmup,
)
from transformers.utils.versions import require_version
logger = logging.getLogger(__name__)
require_version("pytorch_lightning>=1.0.4")
MODEL_MODES = {
"base": AutoModel,
"sequence-classification": AutoModelForSequenceClassification,
"question-answering": AutoModelForQuestionAnswering,
"pretraining": AutoModelForPreTraining,
"token-classification": AutoModelForTokenClassification,
"language-modeling": AutoModelWithLMHead,
"summarization": AutoModelForSeq2SeqLM,
"translation": AutoModelForSeq2SeqLM,
}
# update this and the import above to support new schedulers from transformers.optimization
arg_to_scheduler = {
"linear": get_linear_schedule_with_warmup,
"cosine": get_cosine_schedule_with_warmup,
"cosine_w_restarts": get_cosine_with_hard_restarts_schedule_with_warmup,
"polynomial": get_polynomial_decay_schedule_with_warmup,
# '': get_constant_schedule, # not supported for now
# '': get_constant_schedule_with_warmup, # not supported for now
}
arg_to_scheduler_choices = sorted(arg_to_scheduler.keys())
arg_to_scheduler_metavar = "{" + ", ".join(arg_to_scheduler_choices) + "}"
class BaseTransformer(pl.LightningModule):
def __init__(
self,
hparams: argparse.Namespace,
num_labels=None,
mode="base",
config=None,
tokenizer=None,
model=None,
**config_kwargs,
):
"""Initialize a model, tokenizer and config."""
super().__init__()
# TODO: move to self.save_hyperparameters()
# self.save_hyperparameters()
# can also expand arguments into trainer signature for easier reading
self.save_hyperparameters(hparams)
self.step_count = 0
self.output_dir = Path(self.hparams.output_dir)
cache_dir = self.hparams.cache_dir if self.hparams.cache_dir else None
if config is None:
self.config = AutoConfig.from_pretrained(
self.hparams.config_name if self.hparams.config_name else self.hparams.model_name_or_path,
**({"num_labels": num_labels} if num_labels is not None else {}),
cache_dir=cache_dir,
**config_kwargs,
)
else:
self.config: PretrainedConfig = config
extra_model_params = ("encoder_layerdrop", "decoder_layerdrop", "dropout", "attention_dropout")
for p in extra_model_params:
if getattr(self.hparams, p, None):
assert hasattr(self.config, p), f"model config doesn't have a `{p}` attribute"
setattr(self.config, p, getattr(self.hparams, p))
if tokenizer is None:
self.tokenizer = AutoTokenizer.from_pretrained(
self.hparams.tokenizer_name if self.hparams.tokenizer_name else self.hparams.model_name_or_path,
cache_dir=cache_dir,
)
else:
self.tokenizer: PreTrainedTokenizer = tokenizer
self.model_type = MODEL_MODES[mode]
if model is None:
self.model = self.model_type.from_pretrained(
self.hparams.model_name_or_path,
from_tf=bool(".ckpt" in self.hparams.model_name_or_path),
config=self.config,
cache_dir=cache_dir,
)
else:
self.model = model
def load_hf_checkpoint(self, *args, **kwargs):
self.model = self.model_type.from_pretrained(*args, **kwargs)
def get_lr_scheduler(self):
get_schedule_func = arg_to_scheduler[self.hparams.lr_scheduler]
scheduler = get_schedule_func(
self.opt, num_warmup_steps=self.hparams.warmup_steps, num_training_steps=self.total_steps()
)
scheduler = {"scheduler": scheduler, "interval": "step", "frequency": 1}
return scheduler
def configure_optimizers(self):
"""Prepare optimizer and schedule (linear warmup and decay)"""
model = self.model
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [
p for n, p in model.named_parameters() if not any(nd in n for nd in no_decay)
], # check this named paramters
"weight_decay": self.hparams.weight_decay,
},
{
"params": [p for n, p in model.named_parameters() if any(nd in n for nd in no_decay)],
"weight_decay": 0.0,
},
]
if self.hparams.adafactor:
optimizer = Adafactor(
optimizer_grouped_parameters, lr=self.hparams.learning_rate, scale_parameter=False, relative_step=False
)
else:
optimizer = AdamW(
optimizer_grouped_parameters, lr=self.hparams.learning_rate, eps=self.hparams.adam_epsilon
)
self.opt = optimizer
scheduler = self.get_lr_scheduler()
return [optimizer], [scheduler]
def test_step(self, batch, batch_nb):
return self.validation_step(batch, batch_nb)
def test_epoch_end(self, outputs):
return self.validation_end(outputs)
def total_steps(self) -> int:
"""The number of total training steps that will be run. Used for lr scheduler purposes."""
num_devices = max(1, self.hparams.gpus) # TODO: consider num_tpu_cores
effective_batch_size = self.hparams.train_batch_size * self.hparams.accumulate_grad_batches * num_devices
return (self.dataset_size / effective_batch_size) * self.hparams.max_epochs
def setup(self, stage):
if stage == "test":
self.dataset_size = len(self.test_dataloader().dataset)
else:
self.train_loader = self.get_dataloader("train", self.hparams.train_batch_size, shuffle=True)
self.dataset_size = len(self.train_dataloader().dataset)
def get_dataloader(self, type_path: str, batch_size: int, shuffle: bool = False):
raise NotImplementedError("You must implement this for your task")
def train_dataloader(self):
return self.train_loader
def val_dataloader(self):
return self.get_dataloader("dev", self.hparams.eval_batch_size, shuffle=False)
def test_dataloader(self):
return self.get_dataloader("test", self.hparams.eval_batch_size, shuffle=False)
def _feature_file(self, mode):
return os.path.join(
self.hparams.data_dir,
"cached_{}_{}_{}".format(
mode,
list(filter(None, self.hparams.model_name_or_path.split("/"))).pop(),
str(self.hparams.max_seq_length),
),
)
@pl.utilities.rank_zero_only
def on_save_checkpoint(self, checkpoint: Dict[str, Any]) -> None:
save_path = self.output_dir.joinpath("best_tfmr")
self.model.config.save_step = self.step_count
self.model.save_pretrained(save_path)
self.tokenizer.save_pretrained(save_path)
@staticmethod
def add_model_specific_args(parser, root_dir):
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--config_name", default="", type=str, help="Pretrained config name or path if not the same as model_name"
)
parser.add_argument(
"--tokenizer_name",
default=None,
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default=str(Path(__file__).parent / "test_run" / "cache"),
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--encoder_layerdrop",
type=float,
help="Encoder layer dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--decoder_layerdrop",
type=float,
help="Decoder layer dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--dropout",
type=float,
help="Dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--attention_dropout",
type=float,
help="Attention dropout probability (Optional). Goes into model.config",
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
parser.add_argument(
"--lr_scheduler",
default="linear",
choices=arg_to_scheduler_choices,
metavar=arg_to_scheduler_metavar,
type=str,
help="Learning rate scheduler",
)
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight decay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument("--num_workers", default=4, type=int, help="kwarg passed to DataLoader")
parser.add_argument("--num_train_epochs", dest="max_epochs", default=3, type=int)
parser.add_argument("--train_batch_size", default=32, type=int)
parser.add_argument("--eval_batch_size", default=32, type=int)
parser.add_argument("--adafactor", action="store_true")
class InitCallback(pl.Callback):
# this process can also be done with PL ddp plugging.
# But still it is experimental (check original RAG, I updated that with pluggin (shamanez))
def on_sanity_check_start(self, trainer, pl_module):
if (
trainer.is_global_zero and trainer.global_rank == 0
): # we initialize the retriever only on master worker with RAY. In new pytorch-lightning accelorators are removed.
pl_module.model.rag.retriever.init_retrieval() # better to use hook functions.
class CheckParamCallback(pl.Callback):
# check whether new added model paramters are differentiable
def on_after_backward(self, trainer, pl_module):
# print(pl_module.model.rag)
for name, param in pl_module.model.rag.named_parameters():
if param.grad is None:
print(name)
class LoggingCallback(pl.Callback):
def on_batch_end(self, trainer, pl_module):
lr_scheduler = trainer.lr_schedulers[0]["scheduler"]
lrs = {f"lr_group_{i}": lr for i, lr in enumerate(lr_scheduler.get_lr())}
pl_module.logger.log_metrics(lrs)
def on_validation_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
rank_zero_info("***** Validation results *****")
metrics = trainer.callback_metrics
# Log results
for key in sorted(metrics):
if key not in ["log", "progress_bar"]:
rank_zero_info("{} = {}\n".format(key, str(metrics[key])))
def on_test_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
rank_zero_info("***** Test results *****")
metrics = trainer.callback_metrics
# Log and save results to file
output_test_results_file = os.path.join(pl_module.hparams.output_dir, "test_results.txt")
with open(output_test_results_file, "w") as writer:
for key in sorted(metrics):
if key not in ["log", "progress_bar"]:
rank_zero_info("{} = {}\n".format(key, str(metrics[key])))
writer.write("{} = {}\n".format(key, str(metrics[key])))
def add_generic_args(parser, root_dir) -> None:
# To allow all pl args uncomment the following line
# parser = pl.Trainer.add_argparse_args(parser)
parser.add_argument(
"--output_dir",
default=str(Path(__file__).parent / "test_run" / "model_checkpoints"),
type=str,
help="The output directory where the model predictions and checkpoints will be written.",
)
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O2",
help=(
"For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']. "
"See details at https://nvidia.github.io/apex/amp.html"
),
)
parser.add_argument("--n_tpu_cores", dest="tpu_cores", type=int)
parser.add_argument("--max_grad_norm", dest="gradient_clip_val", default=1.0, type=float, help="Max gradient norm")
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_predict", action="store_true", help="Whether to run predictions on the test set.")
parser.add_argument(
"--gradient_accumulation_steps",
dest="accumulate_grad_batches",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument(
"--data_dir",
default=str(Path(__file__).parent / "test_run" / "dummy-train-data"),
type=str,
help="The input data dir. Should contain the training files for the CoNLL-2003 NER task.",
)
def generic_train(
model: BaseTransformer,
args: argparse.Namespace,
early_stopping_callback=None,
logger=True, # can pass WandbLogger() here
extra_callbacks=[],
checkpoint_callback=None,
logging_callback=None,
**extra_train_kwargs,
):
pl.seed_everything(args.seed)
# init model
odir = Path(model.hparams.output_dir)
odir.mkdir(exist_ok=True)
# add custom checkpoints
if checkpoint_callback is None:
checkpoint_callback = pl.callbacks.ModelCheckpoint(
filepath=args.output_dir, prefix="checkpoint", monitor="val_loss", mode="min", save_top_k=1
)
if early_stopping_callback:
extra_callbacks.append(early_stopping_callback)
if logging_callback is None:
logging_callback = LoggingCallback()
train_params = {}
if args.fp16:
train_params["precision"] = 16
if args.gpus > 1:
train_params["accelerator"] = "auto"
train_params["strategy"] = "ddp"
train_params["accumulate_grad_batches"] = args.accumulate_grad_batches
train_params["profiler"] = None
train_params["devices"] = "auto"
trainer = pl.Trainer.from_argparse_args(
args,
weights_summary=None,
callbacks=[logging_callback] + extra_callbacks + [InitCallback()] + [checkpoint_callback],
logger=logger,
val_check_interval=1,
num_sanity_val_steps=2,
**train_params,
)
if args.do_train:
trainer.fit(model)
else:
print("RAG modeling tests with new set functions successfuly executed!")
return trainer
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/eval_rag.py
|
""" Evaluation script for RAG models."""
import argparse
import ast
import logging
import os
import sys
import pandas as pd
import torch
from tqdm import tqdm
from transformers import BartForConditionalGeneration, RagRetriever, RagSequenceForGeneration, RagTokenForGeneration
from transformers import logging as transformers_logging
sys.path.append(os.path.join(os.getcwd())) # noqa: E402 # isort:skip
from utils_rag import exact_match_score, f1_score # noqa: E402 # isort:skip
logger = logging.getLogger(__name__)
logging.basicConfig(level=logging.INFO)
transformers_logging.set_verbosity_info()
def infer_model_type(model_name_or_path):
if "token" in model_name_or_path:
return "rag_token"
if "sequence" in model_name_or_path:
return "rag_sequence"
if "bart" in model_name_or_path:
return "bart"
return None
def metric_max_over_ground_truths(metric_fn, prediction, ground_truths):
return max(metric_fn(prediction, gt) for gt in ground_truths)
def get_scores(args, preds_path, gold_data_path):
hypos = [line.strip() for line in open(preds_path, "r").readlines()]
answers = []
if args.gold_data_mode == "qa":
data = pd.read_csv(gold_data_path, sep="\t", header=None)
for answer_list in data[1]:
ground_truths = ast.literal_eval(answer_list)
answers.append(ground_truths)
else:
references = [line.strip() for line in open(gold_data_path, "r").readlines()]
answers = [[reference] for reference in references]
f1 = em = total = 0
for prediction, ground_truths in zip(hypos, answers):
total += 1
em += metric_max_over_ground_truths(exact_match_score, prediction, ground_truths)
f1 += metric_max_over_ground_truths(f1_score, prediction, ground_truths)
em = 100.0 * em / total
f1 = 100.0 * f1 / total
logger.info(f"F1: {f1:.2f}")
logger.info(f"EM: {em:.2f}")
def get_precision_at_k(args, preds_path, gold_data_path):
k = args.k
hypos = [line.strip() for line in open(preds_path, "r").readlines()]
references = [line.strip() for line in open(gold_data_path, "r").readlines()]
em = total = 0
for hypo, reference in zip(hypos, references):
hypo_provenance = set(hypo.split("\t")[:k])
ref_provenance = set(reference.split("\t"))
total += 1
em += len(hypo_provenance & ref_provenance) / k
em = 100.0 * em / total
logger.info(f"Precision@{k}: {em: .2f}")
def evaluate_batch_retrieval(args, rag_model, questions):
def strip_title(title):
if title.startswith('"'):
title = title[1:]
if title.endswith('"'):
title = title[:-1]
return title
retriever_input_ids = rag_model.retriever.question_encoder_tokenizer.batch_encode_plus(
questions,
return_tensors="pt",
padding=True,
truncation=True,
)["input_ids"].to(args.device)
question_enc_outputs = rag_model.rag.question_encoder(retriever_input_ids)
question_enc_pool_output = question_enc_outputs[0]
result = rag_model.retriever(
retriever_input_ids,
question_enc_pool_output.cpu().detach().to(torch.float32).numpy(),
prefix=rag_model.rag.generator.config.prefix,
n_docs=rag_model.config.n_docs,
return_tensors="pt",
)
all_docs = rag_model.retriever.index.get_doc_dicts(result.doc_ids)
provenance_strings = []
for docs in all_docs:
provenance = [strip_title(title) for title in docs["title"]]
provenance_strings.append("\t".join(provenance))
return provenance_strings
def evaluate_batch_e2e(args, rag_model, questions):
with torch.no_grad():
inputs_dict = rag_model.retriever.question_encoder_tokenizer.batch_encode_plus(
questions, return_tensors="pt", padding=True, truncation=True
)
input_ids = inputs_dict.input_ids.to(args.device)
attention_mask = inputs_dict.attention_mask.to(args.device)
outputs = rag_model.generate( # rag_model overwrites generate
input_ids,
attention_mask=attention_mask,
num_beams=args.num_beams,
min_length=args.min_length,
max_length=args.max_length,
early_stopping=False,
num_return_sequences=1,
bad_words_ids=[[0, 0]], # BART likes to repeat BOS tokens, dont allow it to generate more than one
)
answers = rag_model.retriever.generator_tokenizer.batch_decode(outputs, skip_special_tokens=True)
if args.print_predictions:
for q, a in zip(questions, answers):
logger.info("Q: {} - A: {}".format(q, a))
return answers
def get_args():
parser = argparse.ArgumentParser()
parser.add_argument(
"--model_type",
choices=["rag_sequence", "rag_token", "bart"],
type=str,
help=(
"RAG model type: rag_sequence, rag_token or bart, if none specified, the type is inferred from the"
" model_name_or_path"
),
)
parser.add_argument(
"--index_name",
default=None,
choices=["exact", "compressed", "legacy"],
type=str,
help="RAG model retriever type",
)
parser.add_argument(
"--index_path",
default=None,
type=str,
help="Path to the retrieval index",
)
parser.add_argument("--n_docs", default=5, type=int, help="Number of retrieved docs")
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained checkpoints or model identifier from huggingface.co/models",
)
parser.add_argument(
"--eval_mode",
choices=["e2e", "retrieval"],
default="e2e",
type=str,
help=(
"Evaluation mode, e2e calculates exact match and F1 of the downstream task, retrieval calculates"
" precision@k."
),
)
parser.add_argument("--k", default=1, type=int, help="k for the precision@k calculation")
parser.add_argument(
"--evaluation_set",
default=None,
type=str,
required=True,
help="Path to a file containing evaluation samples",
)
parser.add_argument(
"--gold_data_path",
default=None,
type=str,
required=True,
help="Path to a tab-separated file with gold samples",
)
parser.add_argument(
"--gold_data_mode",
default="qa",
type=str,
choices=["qa", "ans"],
help=(
"Format of the gold data file"
"qa - a single line in the following format: question [tab] answer_list"
"ans - a single line of the gold file contains the expected answer string"
),
)
parser.add_argument(
"--predictions_path",
type=str,
default="predictions.txt",
help="Name of the predictions file, to be stored in the checkpoints directory",
)
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument(
"--eval_batch_size",
default=8,
type=int,
help="Batch size per GPU/CPU for evaluation.",
)
parser.add_argument(
"--recalculate",
help="Recalculate predictions even if the prediction file exists",
action="store_true",
)
parser.add_argument(
"--num_beams",
default=4,
type=int,
help="Number of beams to be used when generating answers",
)
parser.add_argument("--min_length", default=1, type=int, help="Min length of the generated answers")
parser.add_argument("--max_length", default=50, type=int, help="Max length of the generated answers")
parser.add_argument(
"--print_predictions",
action="store_true",
help="If True, prints predictions while evaluating.",
)
parser.add_argument(
"--print_docs",
action="store_true",
help="If True, prints docs retried while generating.",
)
args = parser.parse_args()
args.device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
return args
def main(args):
model_kwargs = {}
if args.model_type is None:
args.model_type = infer_model_type(args.model_name_or_path)
assert args.model_type is not None
if args.model_type.startswith("rag"):
model_class = RagTokenForGeneration if args.model_type == "rag_token" else RagSequenceForGeneration
model_kwargs["n_docs"] = args.n_docs
if args.index_name is not None:
model_kwargs["index_name"] = args.index_name
if args.index_path is not None:
model_kwargs["index_path"] = args.index_path
else:
model_class = BartForConditionalGeneration
checkpoints = (
[f.path for f in os.scandir(args.model_name_or_path) if f.is_dir()]
if args.eval_all_checkpoints
else [args.model_name_or_path]
)
logger.info("Evaluate the following checkpoints: %s", checkpoints)
score_fn = get_scores if args.eval_mode == "e2e" else get_precision_at_k
evaluate_batch_fn = evaluate_batch_e2e if args.eval_mode == "e2e" else evaluate_batch_retrieval
for checkpoint in checkpoints:
if os.path.exists(args.predictions_path) and (not args.recalculate):
logger.info("Calculating metrics based on an existing predictions file: {}".format(args.predictions_path))
score_fn(args, args.predictions_path, args.gold_data_path)
continue
logger.info("***** Running evaluation for {} *****".format(checkpoint))
logger.info(" Batch size = %d", args.eval_batch_size)
logger.info(" Predictions will be stored under {}".format(args.predictions_path))
if args.model_type.startswith("rag"):
retriever = RagRetriever.from_pretrained(checkpoint, **model_kwargs)
model = model_class.from_pretrained(checkpoint, retriever=retriever, **model_kwargs)
model.retriever.init_retrieval()
else:
model = model_class.from_pretrained(checkpoint, **model_kwargs)
model.to(args.device)
with open(args.evaluation_set, "r") as eval_file, open(args.predictions_path, "w") as preds_file:
questions = []
for line in tqdm(eval_file):
questions.append(line.strip())
if len(questions) == args.eval_batch_size:
answers = evaluate_batch_fn(args, model, questions)
preds_file.write("\n".join(answers) + "\n")
preds_file.flush()
questions = []
if len(questions) > 0:
answers = evaluate_batch_fn(args, model, questions)
preds_file.write("\n".join(answers))
preds_file.flush()
score_fn(args, args.predictions_path, args.gold_data_path)
if __name__ == "__main__":
args = get_args()
main(args)
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/use_own_knowledge_dataset.py
|
import logging
import os
from dataclasses import dataclass, field
from functools import partial
from pathlib import Path
from tempfile import TemporaryDirectory
from typing import List, Optional
import faiss
import torch
from datasets import Features, Sequence, Value, load_dataset
from transformers import DPRContextEncoder, DPRContextEncoderTokenizerFast, HfArgumentParser
logger = logging.getLogger(__name__)
torch.set_grad_enabled(False)
device = "cuda" if torch.cuda.is_available() else "cpu"
def split_text(text: str, n=100, character=" ") -> List[str]:
"""Split the text every ``n``-th occurrence of ``character``"""
text = text.split(character)
return [character.join(text[i : i + n]).strip() for i in range(0, len(text), n)]
def split_documents(documents: dict) -> dict:
"""Split documents into passages"""
titles, texts = [], []
for title, text in zip(documents["title"], documents["text"]):
if text is not None:
for passage in split_text(text):
titles.append(title if title is not None else "")
texts.append(passage)
return {"title": titles, "text": texts}
def embed(documents: dict, ctx_encoder: DPRContextEncoder, ctx_tokenizer: DPRContextEncoderTokenizerFast) -> dict:
"""Compute the DPR embeddings of document passages"""
input_ids = ctx_tokenizer(
documents["title"], documents["text"], truncation=True, padding="longest", return_tensors="pt"
)["input_ids"]
embeddings = ctx_encoder(input_ids.to(device=device), return_dict=True).pooler_output
return {"embeddings": embeddings.detach().cpu().numpy()}
def main(
rag_example_args: "RagExampleArguments",
processing_args: "ProcessingArguments",
index_hnsw_args: "IndexHnswArguments",
):
######################################
logger.info("Step 1 - Create the dataset")
######################################
# The dataset needed for RAG must have three columns:
# - title (string): title of the document
# - text (string): text of a passage of the document
# - embeddings (array of dimension d): DPR representation of the passage
# Let's say you have documents in tab-separated csv files with columns "title" and "text"
assert os.path.isfile(rag_example_args.csv_path), "Please provide a valid path to a csv file"
# You can load a Dataset object this way
dataset = load_dataset(
"csv", data_files=[rag_example_args.csv_path], split="train", delimiter="\t", column_names=["title", "text"]
)
# More info about loading csv files in the documentation: https://huggingface.co/docs/datasets/loading_datasets?highlight=csv#csv-files
# Then split the documents into passages of 100 words
dataset = dataset.map(split_documents, batched=True, num_proc=processing_args.num_proc)
# And compute the embeddings
ctx_encoder = DPRContextEncoder.from_pretrained(rag_example_args.dpr_ctx_encoder_model_name).to(device=device)
ctx_tokenizer = DPRContextEncoderTokenizerFast.from_pretrained(rag_example_args.dpr_ctx_encoder_model_name)
new_features = Features(
{"text": Value("string"), "title": Value("string"), "embeddings": Sequence(Value("float32"))}
) # optional, save as float32 instead of float64 to save space
dataset = dataset.map(
partial(embed, ctx_encoder=ctx_encoder, ctx_tokenizer=ctx_tokenizer),
batched=True,
batch_size=processing_args.batch_size,
features=new_features,
)
# And finally save your dataset
passages_path = os.path.join(rag_example_args.output_dir, "my_knowledge_dataset")
dataset.save_to_disk(passages_path)
# from datasets import load_from_disk
# dataset = load_from_disk(passages_path) # to reload the dataset
######################################
logger.info("Step 2 - Index the dataset")
######################################
# Let's use the Faiss implementation of HNSW for fast approximate nearest neighbor search
index = faiss.IndexHNSWFlat(index_hnsw_args.d, index_hnsw_args.m, faiss.METRIC_INNER_PRODUCT)
dataset.add_faiss_index("embeddings", custom_index=index)
# And save the index
index_path = os.path.join(rag_example_args.output_dir, "my_knowledge_dataset_hnsw_index.faiss")
dataset.get_index("embeddings").save(index_path)
# dataset.load_faiss_index("embeddings", index_path) # to reload the index
@dataclass
class RagExampleArguments:
csv_path: str = field(
default=str(Path(__file__).parent / "test_run" / "dummy-kb" / "my_knowledge_dataset.csv"),
metadata={"help": "Path to a tab-separated csv file with columns 'title' and 'text'"},
)
question: Optional[str] = field(
default=None,
metadata={"help": "Question that is passed as input to RAG. Default is 'What does Moses' rod turn into ?'."},
)
rag_model_name: str = field(
default="facebook/rag-sequence-nq",
metadata={"help": "The RAG model to use. Either 'facebook/rag-sequence-nq' or 'facebook/rag-token-nq'"},
)
dpr_ctx_encoder_model_name: str = field(
default="facebook/dpr-ctx_encoder-multiset-base",
metadata={
"help": (
"The DPR context encoder model to use. Either 'facebook/dpr-ctx_encoder-single-nq-base' or"
" 'facebook/dpr-ctx_encoder-multiset-base'"
)
},
)
output_dir: Optional[str] = field(
default=str(Path(__file__).parent / "test_run" / "dummy-kb"),
metadata={"help": "Path to a directory where the dataset passages and the index will be saved"},
)
@dataclass
class ProcessingArguments:
num_proc: Optional[int] = field(
default=None,
metadata={
"help": "The number of processes to use to split the documents into passages. Default is single process."
},
)
batch_size: int = field(
default=16,
metadata={
"help": "The batch size to use when computing the passages embeddings using the DPR context encoder."
},
)
@dataclass
class IndexHnswArguments:
d: int = field(
default=768,
metadata={"help": "The dimension of the embeddings to pass to the HNSW Faiss index."},
)
m: int = field(
default=128,
metadata={
"help": (
"The number of bi-directional links created for every new element during the HNSW index construction."
)
},
)
if __name__ == "__main__":
logging.basicConfig(level=logging.WARNING)
logger.setLevel(logging.INFO)
parser = HfArgumentParser((RagExampleArguments, ProcessingArguments, IndexHnswArguments))
rag_example_args, processing_args, index_hnsw_args = parser.parse_args_into_dataclasses()
with TemporaryDirectory() as tmp_dir:
rag_example_args.output_dir = rag_example_args.output_dir or tmp_dir
main(rag_example_args, processing_args, index_hnsw_args)
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/requirements.txt
|
faiss-cpu >= 1.7.2
datasets
psutil >= 5.9.1
torch >= 1.11.0
pytorch-lightning == 1.6.4
nvidia-ml-py3 == 7.352.0
ray >= 1.13.0
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/finetune_rag.py
|
"""Finetuning script for RAG models. Adapted from examples.seq2seq.finetune.py"""
import argparse
import copy
import json
import logging
import multiprocessing
import os
import random
import shutil
import sys
import time
from collections import defaultdict
from pathlib import Path
from typing import Any, Dict, List, Tuple
import numpy as np
import pytorch_lightning as pl
import torch
import torch.distributed as dist
from datasets import concatenate_datasets, load_from_disk
from torch.utils.data import DataLoader
from transformers import (
AutoConfig,
AutoTokenizer,
BartForConditionalGeneration,
BatchEncoding,
DPRConfig,
DPRContextEncoder,
DPRContextEncoderTokenizerFast,
RagConfig,
RagSequenceForGeneration,
RagTokenForGeneration,
RagTokenizer,
T5ForConditionalGeneration,
)
from transformers import logging as transformers_logging
from transformers.integrations import is_ray_available
if is_ray_available():
import ray
from distributed_ray_retriever import RagRayDistributedRetriever, RayRetriever
from glob import glob
from callbacks_rag import Seq2SeqLoggingCallback, get_checkpoint_callback, get_early_stopping_callback
from kb_encode_utils import add_index, embed_update
from lightning_base import BaseTransformer, add_generic_args, generic_train
from pynvml import nvmlDeviceGetCount, nvmlDeviceGetHandleByIndex, nvmlDeviceGetMemoryInfo, nvmlInit
from utils_rag import (
Seq2SeqDataset,
calculate_exact_match,
get_git_info,
is_rag_model,
lmap,
pickle_save,
save_git_info,
save_json,
set_extra_model_params,
)
logging.basicConfig(level=logging.INFO)
logger = logging.getLogger(__name__)
transformers_logging.set_verbosity_info()
sys.path.insert(2, str(Path(__file__).resolve().parents[1]))
isEmUpdateBusy = False
isAddIndexBusy = False
processes = []
threadHandle_index = None
class AttrDict(dict):
def __init__(self, *args, **kwargs):
super(AttrDict, self).__init__(*args, **kwargs)
self.__dict__ = self
class GenerativeQAModule(BaseTransformer):
mode = "generative_qa"
loss_names = ["loss"]
metric_names = ["em"]
val_metric = "em"
def __init__(self, hparams, **kwargs):
# when loading from a pytorch lightning checkpoint, hparams are passed as dict
if isinstance(hparams, dict):
hparams = AttrDict(hparams)
if hparams.model_type == "rag_sequence":
self.model_class = RagSequenceForGeneration
elif hparams.model_type == "rag_token":
self.model_class = RagTokenForGeneration
elif hparams.model_type == "bart":
self.model_class = BartForConditionalGeneration
else:
self.model_class = T5ForConditionalGeneration
self.is_rag_model = is_rag_model(hparams.model_type)
config_class = RagConfig if self.is_rag_model else AutoConfig
config = config_class.from_pretrained(hparams.model_name_or_path)
# set retriever parameters
config.index_name = hparams.index_name or config.index_name
config.passages_path = hparams.passages_path or config.passages_path
config.index_path = hparams.index_path or config.index_path
config.use_dummy_dataset = hparams.use_dummy_dataset
# set extra_model_params for generator configs and load_model
extra_model_params = ("encoder_layerdrop", "decoder_layerdrop", "attention_dropout", "dropout")
if self.is_rag_model:
if hparams.prefix is not None:
config.generator.prefix = hparams.prefix
config.label_smoothing = hparams.label_smoothing
hparams, config.generator = set_extra_model_params(extra_model_params, hparams, config.generator)
if hparams.distributed_retriever == "ray":
# The Ray retriever needs the handles to the retriever actors.
retriever = RagRayDistributedRetriever.from_pretrained(
hparams.model_name_or_path, hparams.actor_handles, config=config
)
if hparams.end2end:
ctx_encoder_tokenizer = DPRContextEncoderTokenizerFast.from_pretrained(
"facebook/dpr-ctx_encoder-multiset-base"
)
retriever.set_ctx_encoder_tokenizer(ctx_encoder_tokenizer)
else:
logger.info("please use RAY as the distributed retrieval method")
model = self.model_class.from_pretrained(hparams.model_name_or_path, config=config, retriever=retriever)
if hparams.end2end:
ctx_encoder = DPRContextEncoder.from_pretrained(hparams.context_encoder_name)
model.set_context_encoder_for_training(ctx_encoder)
prefix = config.question_encoder.prefix
else:
if hparams.prefix is not None:
config.prefix = hparams.prefix
hparams, config = set_extra_model_params(extra_model_params, hparams, config)
model = self.model_class.from_pretrained(hparams.model_name_or_path, config=config)
prefix = config.prefix
tokenizer = (
RagTokenizer.from_pretrained(hparams.model_name_or_path)
if self.is_rag_model
else AutoTokenizer.from_pretrained(hparams.model_name_or_path)
)
self.config_dpr = DPRConfig.from_pretrained(hparams.context_encoder_name)
self.custom_config = hparams
self.context_tokenizer = DPRContextEncoderTokenizerFast.from_pretrained(hparams.context_encoder_name)
super().__init__(hparams, config=config, tokenizer=tokenizer, model=model)
save_git_info(self.hparams.output_dir)
self.output_dir = Path(self.hparams.output_dir)
self.dpr_ctx_check_dir = str(Path(self.hparams.output_dir)) + "/dpr_ctx_checkpoint"
self.metrics_save_path = Path(self.output_dir) / "metrics.json"
self.hparams_save_path = Path(self.output_dir) / "hparams.pkl"
pickle_save(self.hparams, self.hparams_save_path)
self.step_count = 0
self.metrics = defaultdict(list)
self.dataset_kwargs: dict = {
"data_dir": self.hparams.data_dir,
"max_source_length": self.hparams.max_source_length,
"prefix": prefix or "",
}
n_observations_per_split = {
"train": self.hparams.n_train,
"val": self.hparams.n_val,
"test": self.hparams.n_test,
}
self.n_obs = {k: v if v >= 0 else None for k, v in n_observations_per_split.items()}
self.target_lens = {
"train": self.hparams.max_target_length,
"val": self.hparams.val_max_target_length,
"test": self.hparams.test_max_target_length,
}
assert self.target_lens["train"] <= self.target_lens["val"], f"target_lens: {self.target_lens}"
assert self.target_lens["train"] <= self.target_lens["test"], f"target_lens: {self.target_lens}"
self.hparams.git_sha = get_git_info()["repo_sha"]
self.num_workers = hparams.num_workers
self.distributed_port = self.hparams.distributed_port
# For single GPU training, init_ddp_connection is not called.
# So we need to initialize the retrievers here.
if hparams.gpus <= 1:
if hparams.distributed_retriever == "ray":
self.model.retriever.init_retrieval()
else:
logger.info("please use RAY as the distributed retrieval method")
self.distributed_retriever = hparams.distributed_retriever
def forward(self, input_ids, **kwargs):
return self.model(input_ids, **kwargs)
def ids_to_clean_text(self, generated_ids: List[int]):
gen_text = self.tokenizer.batch_decode(
generated_ids, skip_special_tokens=True, clean_up_tokenization_spaces=True
)
return lmap(str.strip, gen_text)
def _step(self, batch: dict) -> Tuple:
source_ids, source_mask, target_ids = batch["input_ids"], batch["attention_mask"], batch["decoder_input_ids"]
rag_kwargs = {}
if isinstance(self.model, T5ForConditionalGeneration):
decoder_input_ids = self.model._shift_right(target_ids)
lm_labels = target_ids
elif isinstance(self.model, BartForConditionalGeneration):
decoder_input_ids = target_ids[:, :-1].contiguous()
lm_labels = target_ids[:, 1:].clone()
else:
assert self.is_rag_model
generator = self.model.rag.generator
if isinstance(generator, T5ForConditionalGeneration):
decoder_start_token_id = generator.config.decoder_start_token_id
decoder_input_ids = (
torch.cat(
[torch.tensor([[decoder_start_token_id]] * target_ids.shape[0]).to(target_ids), target_ids],
dim=1,
)
if target_ids.shape[0] < self.target_lens["train"]
else generator._shift_right(target_ids)
)
elif isinstance(generator, BartForConditionalGeneration):
decoder_input_ids = target_ids
lm_labels = decoder_input_ids
rag_kwargs["reduce_loss"] = True
assert decoder_input_ids is not None
outputs = self(
source_ids,
attention_mask=source_mask,
decoder_input_ids=decoder_input_ids,
use_cache=False,
labels=lm_labels,
**rag_kwargs,
)
loss = outputs["loss"]
return (loss,)
@property
def pad(self) -> int:
raise NotImplementedError("pad not implemented")
def training_step(self, batch, batch_idx) -> Dict:
global isEmUpdateBusy # use to check whether the entire embedding update process is finished or not
global isAddIndexBusy # use to check whether the entire indexing process is finished or not
global processes # use to keep threads embedding update processes
global threadHandle_index # use to keep thread in embedding indexing processes
if (self.trainer.global_rank == 0) and (self.custom_config.end2end):
if (not batch_idx == 0) and (batch_idx % self.custom_config.indexing_freq == 0):
free_gpu_list = []
nvmlInit()
deviceCount = nvmlDeviceGetCount()
my_list = json.loads(self.custom_config.gpu_order)
for i in range(deviceCount):
handle = nvmlDeviceGetHandleByIndex(i)
info = nvmlDeviceGetMemoryInfo(handle)
if info.used / 1e6 < 15:
position = my_list.index(i)
free_gpu_list.append("cuda:" + str(position))
if len(free_gpu_list) >= self.custom_config.index_gpus:
has_free_gpus = True
else:
has_free_gpus = False
if (not isEmUpdateBusy) and has_free_gpus:
model_copy = type(self.model.rag.ctx_encoder)(
self.config_dpr
) # get a new instance #this will be load in the CPU
model_copy.load_state_dict(self.model.rag.ctx_encoder.state_dict()) # copy weights
processes = []
if len(free_gpu_list) > self.custom_config.index_gpus:
cuda_devices = random.sample(free_gpu_list, self.custom_config.index_gpus)
else:
cuda_devices = free_gpu_list
num_processes = len(cuda_devices)
for rank in range(num_processes):
logger.info("Iniitializing embedding calculation process rank{}".format(rank))
device = cuda_devices[rank]
p = multiprocessing.Process(
target=embed_update,
args=(
copy.deepcopy(model_copy),
num_processes,
device,
rank,
self.custom_config.shard_dir,
self.custom_config.csv_path,
),
)
processes.append(p)
for p in processes:
p.start()
isEmUpdateBusy = True
if isEmUpdateBusy and (not isAddIndexBusy):
index_process_list = [processes[k].is_alive() for k in range(self.custom_config.index_gpus)]
if (
sum(index_process_list) == 0
): # If entire list is false, we can say all embedding calculation process has finished
logger.info("Start adding the index")
threadHandle_index = multiprocessing.Process(
target=add_index,
args=(
self.custom_config.shard_dir,
self.config.index_path,
),
)
threadHandle_index.start()
isAddIndexBusy = True
# check when index building has started
if isAddIndexBusy:
# check still the index_building process is happening
if not threadHandle_index.is_alive():
logger.info("Merging the dataset shards")
saved_dataset_shards = []
for address in glob(str(self.custom_config.shard_dir) + "/*/"):
saved_dataset_shards.append(load_from_disk(address))
concat = concatenate_datasets(saved_dataset_shards)
concat.save_to_disk(self.config.passages_path) # here we update the main passage file on the disk
logger.info("done updating the dataset")
# To Do (@Aaron) : Useful in the future dynamic memory implementation.
# if you load the index from the disk make sure to update the index file here, otherwise it is ok to update the index file from the worker.
# logger.info("then updating the index")
# shutil.copy(self.custom_config.temp_index, self.config.idex_path)
logger.info("Loading new passages and iniitalzing new index")
self.trainer.model.module.module.model.rag.retriever.re_load()
self.trainer.model.module.module.model.rag.retriever.init_retrieval()
isEmUpdateBusy = False
isAddIndexBusy = False
self.trainer.strategy.barrier("barrier")
loss_tensors = self._step(batch)
logs = dict(zip(self.loss_names, loss_tensors))
# tokens per batch
tgt_pad_token_id = (
self.tokenizer.generator.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
src_pad_token_id = (
self.tokenizer.question_encoder.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
logs["tpb"] = (
batch["input_ids"].ne(src_pad_token_id).sum() + batch["decoder_input_ids"].ne(tgt_pad_token_id).sum()
)
self.log("loss", loss_tensors[0])
return loss_tensors[0]
def validation_step(self, batch, batch_idx) -> Dict:
return self._generative_step(batch)
def validation_epoch_end(self, outputs, prefix="val") -> Dict:
self.step_count += 1
losses = {k: torch.stack([x[k] for x in outputs]).mean() for k in self.loss_names}
loss = losses["loss"]
gen_metrics = {
k: np.array([x[k] for x in outputs]).mean() for k in self.metric_names + ["gen_time", "gen_len"]
}
metrics_tensor: torch.FloatTensor = torch.tensor(gen_metrics[self.val_metric]).type_as(loss)
gen_metrics.update({k: v.item() for k, v in losses.items()})
# fix for https://github.com/PyTorchLightning/pytorch-lightning/issues/2424
if dist.is_initialized():
dist.all_reduce(metrics_tensor, op=dist.ReduceOp.SUM)
metrics_tensor = metrics_tensor / dist.get_world_size()
gen_metrics.update({self.val_metric: metrics_tensor.item()})
losses.update(gen_metrics)
metrics = {f"{prefix}_avg_{k}": x for k, x in losses.items()}
metrics["step_count"] = self.step_count
self.save_metrics(metrics, prefix) # writes to self.metrics_save_path
log_dict = {
f"{prefix}_avg_em": metrics[f"{prefix}_avg_em"],
"step_count": metrics["step_count"],
f"{prefix}_avg_loss": metrics[f"{prefix}_avg_loss"],
f"{prefix}_loss": loss,
f"{prefix}_em": metrics_tensor,
}
self.log_dict(log_dict)
def save_metrics(self, latest_metrics, type_path) -> None:
self.metrics[type_path].append(latest_metrics)
save_json(self.metrics, self.metrics_save_path)
def calc_generative_metrics(self, preds, target) -> Dict:
return calculate_exact_match(preds, target)
def _generative_step(self, batch: dict) -> dict:
start_time = time.time()
batch = BatchEncoding(batch).to(device=self.model.device)
generated_ids = self.model.generate(
batch["input_ids"],
attention_mask=batch["attention_mask"],
do_deduplication=False, # rag specific parameter
use_cache=True,
min_length=1,
max_length=self.target_lens["val"],
)
gen_time = (time.time() - start_time) / batch["input_ids"].shape[0]
preds: List[str] = self.ids_to_clean_text(generated_ids)
target: List[str] = self.ids_to_clean_text(batch["decoder_input_ids"])
# print(preds,target)
loss_tensors = self._step(batch)
base_metrics = dict(zip(self.loss_names, loss_tensors))
gen_metrics: Dict = self.calc_generative_metrics(preds, target)
summ_len = np.mean(lmap(len, generated_ids))
base_metrics.update(gen_time=gen_time, gen_len=summ_len, preds=preds, target=target, **gen_metrics)
return base_metrics
def test_step(self, batch, batch_idx):
return self._generative_step(batch)
def test_epoch_end(self, outputs):
return self.validation_epoch_end(outputs, prefix="test")
def get_dataset(self, type_path) -> Seq2SeqDataset:
n_obs = self.n_obs[type_path]
max_target_length = self.target_lens[type_path]
dataset = Seq2SeqDataset(
self.tokenizer,
type_path=type_path,
n_obs=n_obs,
max_target_length=max_target_length,
**self.dataset_kwargs,
)
return dataset
def get_dataloader(self, type_path: str, batch_size: int, shuffle: bool = False) -> DataLoader:
dataset = self.get_dataset(type_path)
dataloader = DataLoader(
dataset,
batch_size=batch_size,
collate_fn=dataset.collate_fn,
shuffle=shuffle,
num_workers=self.num_workers,
)
return dataloader
def train_dataloader(self) -> DataLoader:
dataloader = self.get_dataloader("train", batch_size=self.hparams.train_batch_size, shuffle=True)
return dataloader
def val_dataloader(self) -> DataLoader:
return self.get_dataloader("val", batch_size=self.hparams.eval_batch_size)
def test_dataloader(self) -> DataLoader:
return self.get_dataloader("test", batch_size=self.hparams.eval_batch_size)
@pl.utilities.rank_zero_only
def on_save_checkpoint(self, checkpoint: Dict[str, Any]) -> None:
save_path = self.output_dir.joinpath("checkpoint{}".format(self.step_count))
self.model.config.save_step = self.step_count
# self.model.save_pretrained(save_path)
self.tokenizer.save_pretrained(save_path)
if self.custom_config.end2end:
modified_state_dict = self.model.state_dict()
for key in self.model.state_dict().keys():
if key.split(".")[1] == "ctx_encoder":
del modified_state_dict[key]
self.model.save_pretrained(save_directory=save_path, state_dict=modified_state_dict)
save_path_dpr = os.path.join(self.dpr_ctx_check_dir, "checkpoint{}".format(self.step_count))
self.model.rag.ctx_encoder.save_pretrained(save_path_dpr)
self.context_tokenizer.save_pretrained(save_path_dpr)
@staticmethod
def add_model_specific_args(parser, root_dir):
BaseTransformer.add_model_specific_args(parser, root_dir)
add_generic_args(parser, root_dir)
parser.add_argument(
"--max_source_length",
default=128,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument(
"--max_target_length",
default=25,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument(
"--val_max_target_length",
default=25,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument(
"--test_max_target_length",
default=25,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument("--logger_name", type=str, choices=["default", "wandb", "wandb_shared"], default="default")
parser.add_argument("--n_train", type=int, default=-1, required=False, help="# examples. -1 means use all.")
parser.add_argument("--n_val", type=int, default=-1, required=False, help="# examples. -1 means use all.")
parser.add_argument("--n_test", type=int, default=-1, required=False, help="# examples. -1 means use all.")
parser.add_argument("--label_smoothing", type=float, default=0.0, required=False)
parser.add_argument(
"--prefix",
type=str,
default=None,
help="Prefix added at the beginning of each text, typically used with T5-based models.",
)
parser.add_argument(
"--early_stopping_patience",
type=int,
default=-1,
required=False,
help=(
"-1 means never early stop. early_stopping_patience is measured in validation checks, not epochs. So"
" val_check_interval will effect it."
),
)
parser.add_argument(
"--distributed-port", type=int, default=-1, required=False, help="Port number for distributed training."
)
parser.add_argument(
"--model_type",
choices=["rag_sequence", "rag_token", "bart", "t5"],
type=str,
help=(
"RAG model type: sequence or token, if none specified, the type is inferred from the"
" model_name_or_path"
),
)
parser.add_argument(
"--context_encoder_name",
default="facebook/dpr-ctx_encoder-multiset-base",
type=str,
help="Name of the pre-trained context encoder checkpoint from the DPR",
)
parser.add_argument(
"--csv_path",
default=str(Path(__file__).parent / "test_run" / "dummy-kb" / "my_knowledge_dataset.csv"),
type=str,
help="path of the raw KB csv",
)
parser.add_argument("--end2end", action="store_true", help="whether to train the system end2end or not")
parser.add_argument("--index_gpus", type=int, help="how many GPUs used in re-encoding process")
parser.add_argument(
"--shard_dir",
type=str,
default=str(Path(__file__).parent / "test_run" / "kb-shards"),
help="directory used to keep temporary shards during the re-encode process",
)
parser.add_argument(
"--gpu_order",
type=str,
help=(
"order of the GPU used during the fine-tuning. Used to finding free GPUs during the re-encode"
" process. I do not have many GPUs :)"
),
)
parser.add_argument("--indexing_freq", type=int, help="frequency of re-encode process")
return parser
@staticmethod
def add_retriever_specific_args(parser):
parser.add_argument(
"--index_name",
type=str,
default=None,
help=(
"Name of the index to use: 'hf' for a canonical dataset from the datasets library (default), 'custom'"
" for a local index, or 'legacy' for the orignal one)"
),
)
parser.add_argument(
"--passages_path",
type=str,
default=str(Path(__file__).parent / "test_run" / "dummy-kb" / "my_knowledge_dataset"),
help=(
"Path to the dataset of passages for custom index. More info about custom indexes in the RagRetriever"
" documentation as well as in `examples/rag/use_own_knowledge_dataset.py`"
),
)
parser.add_argument(
"--index_path",
type=str,
default=str(Path(__file__).parent / "test_run" / "dummy-kb" / "my_knowledge_dataset_hnsw_index.faiss"),
help=(
"Path to the faiss index for custom index. More info about custom indexes in the RagRetriever"
" documentation as well as in `examples/rag/use_own_knowledge_dataset.py`"
),
)
parser.add_argument(
"--distributed_retriever",
choices=["ray", "pytorch"],
type=str,
default="ray",
help=(
"What implementation to use for distributed retriever? If "
"pytorch is selected, the index is loaded on training "
"worker 0, and torch.distributed is used to handle "
"communication between training worker 0, and the other "
"training workers. If ray is selected, the Ray library is "
"used to create load the index on separate processes, "
"and Ray handles the communication between the training "
"workers and the retrieval actors."
),
)
parser.add_argument(
"--use_dummy_dataset",
type=bool,
default=False,
help=(
"Whether to use the dummy version of the dataset index. More info about custom indexes in the"
" RagRetriever documentation as well as in `examples/rag/use_own_knowledge_dataset.py`"
),
)
return parser
@staticmethod
def add_ray_specific_args(parser):
# Ray cluster address.
parser.add_argument(
"--ray-address",
default="auto",
type=str,
help=(
"The address of the Ray cluster to connect to. If not "
"specified, Ray will attempt to automatically detect the "
"cluster. Has no effect if pytorch is used as the distributed "
"retriever."
),
)
parser.add_argument(
"--num_retrieval_workers",
type=int,
default=1,
help=(
"The number of retrieval actors to use when Ray is selected "
"for the distributed retriever. Has no effect when "
"distributed_retriever is set to pytorch."
),
)
return parser
def main(args=None, model=None) -> GenerativeQAModule:
parser = argparse.ArgumentParser()
parser = pl.Trainer.add_argparse_args(parser)
parser = GenerativeQAModule.add_model_specific_args(parser, os.getcwd())
parser = GenerativeQAModule.add_retriever_specific_args(parser)
args = args or parser.parse_args()
Path(args.output_dir).mkdir(exist_ok=True)
Path(args.output_dir + "/dpr_ctx_checkpoint").mkdir(
exist_ok=True
) # save dpr_context encoder seprately for the future use
print(args.shard_dir)
if os.path.exists(args.shard_dir): # we do not need previous kb shards used in dataset re-conding and re-indexing
shutil.rmtree(args.shard_dir)
Path(args.shard_dir).mkdir(exist_ok=True)
if os.path.exists(
args.cache_dir
): # we do not need previous cache files used in dataset re-conding and re-indexing
shutil.rmtree(args.cache_dir)
Path(args.cache_dir).mkdir(exist_ok=True)
named_actors = []
if args.distributed_retriever == "ray" and args.gpus > 1:
if not is_ray_available():
raise RuntimeError("Please install Ray to use the Ray distributed retriever.")
# Connect to an existing Ray cluster.
try:
ray.init(address=args.ray_address, namespace="rag")
except (ConnectionError, ValueError):
logger.warning(
"Connection to Ray cluster failed. Make sure a Ray "
"cluster is running by either using Ray's cluster "
"launcher (`ray up`) or by manually starting Ray on "
"each node via `ray start --head` for the head node "
"and `ray start --address='<ip address>:6379'` for "
"additional nodes. See "
"https://docs.ray.io/en/master/cluster/index.html "
"for more info."
)
raise
# Create Ray actors only for rank 0.
if ("LOCAL_RANK" not in os.environ or os.environ["LOCAL_RANK"] == 0) and (
"NODE_RANK" not in os.environ or os.environ["NODE_RANK"] == 0
):
remote_cls = ray.remote(RayRetriever)
named_actors = [
remote_cls.options(name="retrieval_worker_{}".format(i)).remote()
for i in range(args.num_retrieval_workers)
]
else:
logger.info(
"Getting named actors for NODE_RANK {}, LOCAL_RANK {}".format(
os.environ["NODE_RANK"], os.environ["LOCAL_RANK"]
)
)
named_actors = [ray.get_actor("retrieval_worker_{}".format(i)) for i in range(args.num_retrieval_workers)]
args.actor_handles = named_actors
assert args.actor_handles == named_actors
if model is None:
model: GenerativeQAModule = GenerativeQAModule(args)
dataset = Path(args.data_dir).name
if (
args.logger_name == "default"
or args.fast_dev_run
or str(args.output_dir).startswith("/tmp")
or str(args.output_dir).startswith("/var")
):
training_logger = True # don't pollute wandb logs unnecessarily
elif args.logger_name == "wandb":
from pytorch_lightning.loggers import WandbLogger
project = os.environ.get("WANDB_PROJECT", dataset)
training_logger = WandbLogger(name=model.output_dir.name, project=project)
elif args.logger_name == "wandb_shared":
from pytorch_lightning.loggers import WandbLogger
training_logger = WandbLogger(name=model.output_dir.name, project=f"hf_{dataset}")
es_callback = (
get_early_stopping_callback(model.val_metric, args.early_stopping_patience)
if args.early_stopping_patience >= 0
else False
)
trainer: pl.Trainer = generic_train(
model,
args,
logging_callback=Seq2SeqLoggingCallback(),
checkpoint_callback=get_checkpoint_callback(args.output_dir, model.val_metric),
early_stopping_callback=es_callback,
logger=training_logger,
profiler=pl.profiler.AdvancedProfiler() if args.profile else None,
)
pickle_save(model.hparams, model.output_dir / "hparams.pkl")
if not args.do_predict:
return model
# test() without a model tests using the best checkpoint automatically
trainer.test()
return model
if __name__ == "__main__":
multiprocessing.set_start_method("spawn")
parser = argparse.ArgumentParser()
parser = pl.Trainer.add_argparse_args(parser)
parser = GenerativeQAModule.add_model_specific_args(parser, os.getcwd())
parser = GenerativeQAModule.add_retriever_specific_args(parser)
parser = GenerativeQAModule.add_ray_specific_args(parser)
# Pytorch Lightning Profiler
parser.add_argument(
"--profile",
action="store_true",
help="If True, use pytorch_lightning.profiler.AdvancedProfiler to profile the Trainer.",
)
args = parser.parse_args()
main(args)
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hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever
|
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/test_run/test_finetune.sh
|
# Add parent directory to python path to access lightning_base.py
export PYTHONPATH="../":"${PYTHONPATH}"
#creates the custom knowlegebase
python use_own_knowledge_dataset.py
# Start a single-node Ray cluster.
ray start --head
# A sample finetuning run, you need to specify data_dir, output_dir and model_name_or_path
# run ./examples/rag/finetune_rag_ray.sh --help to see all the possible options
python finetune_rag.py \
--model_name_or_path facebook/rag-token-base \
--model_type rag_token \
--fp16 \
--gpus 2 \
--profile \
--do_train \
--end2end \
--do_predict \
--n_val -1 \
--train_batch_size 1 \
--eval_batch_size 1 \
--max_source_length 128 \
--max_target_length 25 \
--val_max_target_length 25 \
--test_max_target_length 25 \
--label_smoothing 0.1 \
--dropout 0.1 \
--attention_dropout 0.1 \
--weight_decay 0.001 \
--adam_epsilon 1e-08 \
--max_grad_norm 0.1 \
--lr_scheduler polynomial \
--learning_rate 3e-05 \
--num_train_epochs 10 \
--warmup_steps 500 \
--gradient_accumulation_steps 1 \
--distributed_retriever ray \
--num_retrieval_workers 4 \
--index_name custom \
--context_encoder_name facebook/dpr-ctx_encoder-multiset-base \
--index_gpus 2 \
--gpu_order [2,3,4,5,6,7,8,9,0,1] \
--indexing_freq 5
# Stop the Ray cluster.
ray stop
#CUDA_VISIBLE_DEVICES=2,3,4,5,6,7,8,9,0,1 sh ./test_run/test_finetune.sh
#Make sure --gpu_order is same.
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hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever
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hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/test_run/test_rag_new_features.sh
|
export PYTHONPATH="../":"${PYTHONPATH}"
python use_own_knowledge_dataset.py
ray start --head
python finetune_rag.py \
--model_name_or_path facebook/rag-token-base \
--model_type rag_token \
--context_encoder_name facebook/dpr-ctx_encoder-multiset-base \
--fp16 \
--gpus 1 \
--profile \
--end2end \
--index_name custom
ray stop
| 0 |
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/test_run
|
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/test_run/dummy-kb/my_knowledge_dataset.csv
|
Aaron Aaron Aaron ( or ; "Ahärôn") is a prophet, high priest, and the brother of Moses in the Abrahamic religions. Knowledge of Aaron, along with his brother Moses, comes exclusively from religious texts, such as the Bible and Quran. The Hebrew Bible relates that, unlike Moses, who grew up in the Egyptian royal court, Aaron and his elder sister Miriam remained with their kinsmen in the eastern border-land of Egypt (Goshen). When Moses first confronted the Egyptian king about the Israelites, Aaron served as his brother's spokesman ("prophet") to the Pharaoh. Part of the Law (Torah) that Moses received from God at Sinai granted Aaron the priesthood for himself and his male descendants, and he became the first High Priest of the Israelites. Aaron died before the Israelites crossed the North Jordan river and he was buried on Mount Hor (Numbers 33:39; Deuteronomy 10:6 says he died and was buried at Moserah). Aaron is also mentioned in the New Testament of the Bible. According to the Book of Exodus, Aaron first functioned as Moses' assistant. Because Moses complained that he could not speak well, God appointed Aaron as Moses' "prophet" (Exodus 4:10-17; 7:1). At the command of Moses, he let his rod turn into a snake. Then he stretched out his rod in order to bring on the first three plagues. After that, Moses tended to act and speak for himself. During the journey in the wilderness, Aaron was not always prominent or active. At the battle with Amalek, he was chosen with Hur to support the hand of Moses that held the "rod of God". When the revelation was given to Moses at biblical Mount Sinai, he headed the elders of Israel who accompanied Moses on the way to the summit.
"Pokémon" Pokémon , also known as in Japan, is a media franchise managed by The Pokémon Company, a Japanese consortium between Nintendo, Game Freak, and Creatures. The franchise copyright is shared by all three companies, but Nintendo is the sole owner of the trademark. The franchise was created by Satoshi Tajiri in 1995, and is centered on fictional creatures called "Pokémon", which humans, known as Pokémon Trainers, catch and train to battle each other for sport. The English slogan for the franchise is "Gotta Catch 'Em All". Works within the franchise are set in the Pokémon universe. The franchise began as "Pokémon Red" and "Green" (released outside of Japan as "Pokémon Red" and "Blue"), a pair of video games for the original Game Boy that were developed by Game Freak and published by Nintendo in February 1996. "Pokémon" has since gone on to become the highest-grossing media franchise of all time, with over in revenue up until March 2017. The original video game series is the second best-selling video game franchise (behind Nintendo's "Mario" franchise) with more than 300million copies sold and over 800million mobile downloads. In addition, the "Pokémon" franchise includes the world's top-selling toy brand, the top-selling trading card game with over 25.7billion cards sold, an anime television series that has become the most successful video game adaptation with over 20 seasons and 1,000 episodes in 124 countries, as well as an anime film series, a , books, manga comics, music, and merchandise. The franchise is also represented in other Nintendo media, such as the "Super Smash Bros." series. In November 2005, 4Kids Entertainment, which had managed the non-game related licensing of "Pokémon", announced that it had agreed not to renew the "Pokémon" representation agreement. The Pokémon Company International oversees all "Pokémon" licensing outside Asia.
| 0 |
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/test_run
|
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/test_run/dummy-train-data/test.target
|
to a snake
Moses' assistant
Egyptian royal court
let his rod turn in to a snake
The Pokémon Company
Nintendo
world's top-selling toy brand, the top-selling trading card game
over 20 seasons
| 0 |
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/test_run
|
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/test_run/dummy-train-data/test.source
|
What does Moses' rod turn into ?
Who is Aron?
Where did Moses grow up ?
What happens at the command of the Moses ?
Who manages the Pokémon ?
Who owned the Pokémon trademark ?
What else include in Pokémon franchise ?
How many seasons in Pokémon animme series ?
| 0 |
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/test_run
|
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/test_run/dummy-train-data/val.source
|
What does Moses' rod turn into ?
Who is Aron?
Where did Moses grow up ?
What happens at the command of the Moses ?
Who manages the Pokémon ?
Who owned the Pokémon trademark ?
What else include in Pokémon franchise ?
How many seasons in Pokémon animme series ?
| 0 |
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/test_run
|
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/test_run/dummy-train-data/train.source
|
What does Moses' rod turn into ?
Who is Aron?
Where did Moses grow up ?
What happens at the command of the Moses ?
Who manages the Pokémon ?
Who owned the Pokémon trademark ?
What else include in Pokémon franchise ?
How many seasons in Pokémon animme series ?
What does Moses' rod turn into ?
Who is Aron?
Where did Moses grow up ?
What happens at the command of the Moses ?
Who manages the Pokémon ?
Who owned the Pokémon trademark ?
What else include in Pokémon franchise ?
How many seasons in Pokémon animme series ?
What does Moses' rod turn into ?
Who is Aron?
Where did Moses grow up ?
What happens at the command of the Moses ?
Who manages the Pokémon ?
Who owned the Pokémon trademark ?
What else include in Pokémon franchise ?
How many seasons in Pokémon animme series ?
What does Moses' rod turn into ?
Who is Aron?
Where did Moses grow up ?
What happens at the command of the Moses ?
Who manages the Pokémon ?
Who owned the Pokémon trademark ?
What else include in Pokémon franchise ?
How many seasons in Pokémon animme series ?
What does Moses' rod turn into ?
Who is Aron?
Where did Moses grow up ?
What happens at the command of the Moses ?
Who manages the Pokémon ?
Who owned the Pokémon trademark ?
What else include in Pokémon franchise ?
How many seasons in Pokémon animme series ?
What does Moses' rod turn into ?
Who is Aron?
Where did Moses grow up ?
What happens at the command of the Moses ?
Who manages the Pokémon ?
Who owned the Pokémon trademark ?
What else include in Pokémon franchise ?
How many seasons in Pokémon animme series ?
| 0 |
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/test_run
|
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/test_run/dummy-train-data/train.target
|
to a snake
Moses' assistant
Egyptian royal court
let his rod turn in to a snake
The Pokémon Company
Nintendo
world's top-selling toy brand, the top-selling trading card game
over 20 seasons
to a snake
Moses' assistant
Egyptian royal court
let his rod turn in to a snake
The Pokémon Company
Nintendo
world's top-selling toy brand, the top-selling trading card game
over 20 seasons
to a snake
Moses' assistant
Egyptian royal court
let his rod turn in to a snake
The Pokémon Company
Nintendo
world's top-selling toy brand, the top-selling trading card game
over 20 seasons
to a snake
Moses' assistant
Egyptian royal court
let his rod turn in to a snake
The Pokémon Company
Nintendo
world's top-selling toy brand, the top-selling trading card game
over 20 seasons
to a snake
Moses' assistant
Egyptian royal court
let his rod turn in to a snake
The Pokémon Company
Nintendo
world's top-selling toy brand, the top-selling trading card game
over 20 seasons
to a snake
Moses' assistant
Egyptian royal court
let his rod turn in to a snake
The Pokémon Company
Nintendo
world's top-selling toy brand, the top-selling trading card game
over 20 seasons
| 0 |
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/test_run
|
hf_public_repos/transformers/examples/research_projects/rag-end2end-retriever/test_run/dummy-train-data/val.target
|
to a snake
Moses' assistant
Egyptian royal court
let his rod turn in to a snake
The Pokémon Company
Nintendo
world's top-selling toy brand, the top-selling trading card game
over 20 seasons
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/visual_bert/visualizing_image.py
|
"""
coding=utf-8
Copyright 2018, Antonio Mendoza Hao Tan, Mohit Bansal
Adapted From Facebook Inc, Detectron2
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.import copy
"""
import colorsys
import io
import cv2
import matplotlib as mpl
import matplotlib.colors as mplc
import matplotlib.figure as mplfigure
import numpy as np
import torch
from matplotlib.backends.backend_agg import FigureCanvasAgg
from utils import img_tensorize
_SMALL_OBJ = 1000
class SingleImageViz:
def __init__(
self,
img,
scale=1.2,
edgecolor="g",
alpha=0.5,
linestyle="-",
saveas="test_out.jpg",
rgb=True,
pynb=False,
id2obj=None,
id2attr=None,
pad=0.7,
):
"""
img: an RGB image of shape (H, W, 3).
"""
if isinstance(img, torch.Tensor):
img = img.numpy().astype("np.uint8")
if isinstance(img, str):
img = img_tensorize(img)
assert isinstance(img, np.ndarray)
width, height = img.shape[1], img.shape[0]
fig = mplfigure.Figure(frameon=False)
dpi = fig.get_dpi()
width_in = (width * scale + 1e-2) / dpi
height_in = (height * scale + 1e-2) / dpi
fig.set_size_inches(width_in, height_in)
ax = fig.add_axes([0.0, 0.0, 1.0, 1.0])
ax.axis("off")
ax.set_xlim(0.0, width)
ax.set_ylim(height)
self.saveas = saveas
self.rgb = rgb
self.pynb = pynb
self.img = img
self.edgecolor = edgecolor
self.alpha = 0.5
self.linestyle = linestyle
self.font_size = int(np.sqrt(min(height, width)) * scale // 3)
self.width = width
self.height = height
self.scale = scale
self.fig = fig
self.ax = ax
self.pad = pad
self.id2obj = id2obj
self.id2attr = id2attr
self.canvas = FigureCanvasAgg(fig)
def add_box(self, box, color=None):
if color is None:
color = self.edgecolor
(x0, y0, x1, y1) = box
width = x1 - x0
height = y1 - y0
self.ax.add_patch(
mpl.patches.Rectangle(
(x0, y0),
width,
height,
fill=False,
edgecolor=color,
linewidth=self.font_size // 3,
alpha=self.alpha,
linestyle=self.linestyle,
)
)
def draw_boxes(self, boxes, obj_ids=None, obj_scores=None, attr_ids=None, attr_scores=None):
if len(boxes.shape) > 2:
boxes = boxes[0]
if len(obj_ids.shape) > 1:
obj_ids = obj_ids[0]
if len(obj_scores.shape) > 1:
obj_scores = obj_scores[0]
if len(attr_ids.shape) > 1:
attr_ids = attr_ids[0]
if len(attr_scores.shape) > 1:
attr_scores = attr_scores[0]
if isinstance(boxes, torch.Tensor):
boxes = boxes.numpy()
if isinstance(boxes, list):
boxes = np.array(boxes)
assert isinstance(boxes, np.ndarray)
areas = np.prod(boxes[:, 2:] - boxes[:, :2], axis=1)
sorted_idxs = np.argsort(-areas).tolist()
boxes = boxes[sorted_idxs] if boxes is not None else None
obj_ids = obj_ids[sorted_idxs] if obj_ids is not None else None
obj_scores = obj_scores[sorted_idxs] if obj_scores is not None else None
attr_ids = attr_ids[sorted_idxs] if attr_ids is not None else None
attr_scores = attr_scores[sorted_idxs] if attr_scores is not None else None
assigned_colors = [self._random_color(maximum=1) for _ in range(len(boxes))]
assigned_colors = [assigned_colors[idx] for idx in sorted_idxs]
if obj_ids is not None:
labels = self._create_text_labels_attr(obj_ids, obj_scores, attr_ids, attr_scores)
for i in range(len(boxes)):
color = assigned_colors[i]
self.add_box(boxes[i], color)
self.draw_labels(labels[i], boxes[i], color)
def draw_labels(self, label, box, color):
x0, y0, x1, y1 = box
text_pos = (x0, y0)
instance_area = (y1 - y0) * (x1 - x0)
small = _SMALL_OBJ * self.scale
if instance_area < small or y1 - y0 < 40 * self.scale:
if y1 >= self.height - 5:
text_pos = (x1, y0)
else:
text_pos = (x0, y1)
height_ratio = (y1 - y0) / np.sqrt(self.height * self.width)
lighter_color = self._change_color_brightness(color, brightness_factor=0.7)
font_size = np.clip((height_ratio - 0.02) / 0.08 + 1, 1.2, 2)
font_size *= 0.75 * self.font_size
self.draw_text(
text=label,
position=text_pos,
color=lighter_color,
)
def draw_text(
self,
text,
position,
color="g",
ha="left",
):
rotation = 0
font_size = self.font_size
color = np.maximum(list(mplc.to_rgb(color)), 0.2)
color[np.argmax(color)] = max(0.8, np.max(color))
bbox = {
"facecolor": "black",
"alpha": self.alpha,
"pad": self.pad,
"edgecolor": "none",
}
x, y = position
self.ax.text(
x,
y,
text,
size=font_size * self.scale,
family="sans-serif",
bbox=bbox,
verticalalignment="top",
horizontalalignment=ha,
color=color,
zorder=10,
rotation=rotation,
)
def save(self, saveas=None):
if saveas is None:
saveas = self.saveas
if saveas.lower().endswith(".jpg") or saveas.lower().endswith(".png"):
cv2.imwrite(
saveas,
self._get_buffer()[:, :, ::-1],
)
else:
self.fig.savefig(saveas)
def _create_text_labels_attr(self, classes, scores, attr_classes, attr_scores):
labels = [self.id2obj[i] for i in classes]
attr_labels = [self.id2attr[i] for i in attr_classes]
labels = [
f"{label} {score:.2f} {attr} {attr_score:.2f}"
for label, score, attr, attr_score in zip(labels, scores, attr_labels, attr_scores)
]
return labels
def _create_text_labels(self, classes, scores):
labels = [self.id2obj[i] for i in classes]
if scores is not None:
if labels is None:
labels = ["{:.0f}%".format(s * 100) for s in scores]
else:
labels = ["{} {:.0f}%".format(li, s * 100) for li, s in zip(labels, scores)]
return labels
def _random_color(self, maximum=255):
idx = np.random.randint(0, len(_COLORS))
ret = _COLORS[idx] * maximum
if not self.rgb:
ret = ret[::-1]
return ret
def _get_buffer(self):
if not self.pynb:
s, (width, height) = self.canvas.print_to_buffer()
if (width, height) != (self.width, self.height):
img = cv2.resize(self.img, (width, height))
else:
img = self.img
else:
buf = io.BytesIO() # works for cairo backend
self.canvas.print_rgba(buf)
width, height = self.width, self.height
s = buf.getvalue()
img = self.img
buffer = np.frombuffer(s, dtype="uint8")
img_rgba = buffer.reshape(height, width, 4)
rgb, alpha = np.split(img_rgba, [3], axis=2)
try:
import numexpr as ne # fuse them with numexpr
visualized_image = ne.evaluate("img * (1 - alpha / 255.0) + rgb * (alpha / 255.0)")
except ImportError:
alpha = alpha.astype("float32") / 255.0
visualized_image = img * (1 - alpha) + rgb * alpha
return visualized_image.astype("uint8")
def _change_color_brightness(self, color, brightness_factor):
assert brightness_factor >= -1.0 and brightness_factor <= 1.0
color = mplc.to_rgb(color)
polygon_color = colorsys.rgb_to_hls(*mplc.to_rgb(color))
modified_lightness = polygon_color[1] + (brightness_factor * polygon_color[1])
modified_lightness = 0.0 if modified_lightness < 0.0 else modified_lightness
modified_lightness = 1.0 if modified_lightness > 1.0 else modified_lightness
modified_color = colorsys.hls_to_rgb(polygon_color[0], modified_lightness, polygon_color[2])
return modified_color
# Color map
_COLORS = (
np.array(
[
0.000,
0.447,
0.741,
0.850,
0.325,
0.098,
0.929,
0.694,
0.125,
0.494,
0.184,
0.556,
0.466,
0.674,
0.188,
0.301,
0.745,
0.933,
0.635,
0.078,
0.184,
0.300,
0.300,
0.300,
0.600,
0.600,
0.600,
1.000,
0.000,
0.000,
1.000,
0.500,
0.000,
0.749,
0.749,
0.000,
0.000,
1.000,
0.000,
0.000,
0.000,
1.000,
0.667,
0.000,
1.000,
0.333,
0.333,
0.000,
0.333,
0.667,
0.000,
0.333,
1.000,
0.000,
0.667,
0.333,
0.000,
0.667,
0.667,
0.000,
0.667,
1.000,
0.000,
1.000,
0.333,
0.000,
1.000,
0.667,
0.000,
1.000,
1.000,
0.000,
0.000,
0.333,
0.500,
0.000,
0.667,
0.500,
0.000,
1.000,
0.500,
0.333,
0.000,
0.500,
0.333,
0.333,
0.500,
0.333,
0.667,
0.500,
0.333,
1.000,
0.500,
0.667,
0.000,
0.500,
0.667,
0.333,
0.500,
0.667,
0.667,
0.500,
0.667,
1.000,
0.500,
1.000,
0.000,
0.500,
1.000,
0.333,
0.500,
1.000,
0.667,
0.500,
1.000,
1.000,
0.500,
0.000,
0.333,
1.000,
0.000,
0.667,
1.000,
0.000,
1.000,
1.000,
0.333,
0.000,
1.000,
0.333,
0.333,
1.000,
0.333,
0.667,
1.000,
0.333,
1.000,
1.000,
0.667,
0.000,
1.000,
0.667,
0.333,
1.000,
0.667,
0.667,
1.000,
0.667,
1.000,
1.000,
1.000,
0.000,
1.000,
1.000,
0.333,
1.000,
1.000,
0.667,
1.000,
0.333,
0.000,
0.000,
0.500,
0.000,
0.000,
0.667,
0.000,
0.000,
0.833,
0.000,
0.000,
1.000,
0.000,
0.000,
0.000,
0.167,
0.000,
0.000,
0.333,
0.000,
0.000,
0.500,
0.000,
0.000,
0.667,
0.000,
0.000,
0.833,
0.000,
0.000,
1.000,
0.000,
0.000,
0.000,
0.167,
0.000,
0.000,
0.333,
0.000,
0.000,
0.500,
0.000,
0.000,
0.667,
0.000,
0.000,
0.833,
0.000,
0.000,
1.000,
0.000,
0.000,
0.000,
0.143,
0.143,
0.143,
0.857,
0.857,
0.857,
1.000,
1.000,
1.000,
]
)
.astype(np.float32)
.reshape(-1, 3)
)
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/visual_bert/processing_image.py
|
"""
coding=utf-8
Copyright 2018, Antonio Mendoza Hao Tan, Mohit Bansal
Adapted From Facebook Inc, Detectron2
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.import copy
"""
import sys
from typing import Tuple
import numpy as np
import torch
from PIL import Image
from torch import nn
from transformers.image_utils import PILImageResampling
from utils import img_tensorize
class ResizeShortestEdge:
def __init__(self, short_edge_length, max_size=sys.maxsize):
"""
Args:
short_edge_length (list[min, max])
max_size (int): maximum allowed longest edge length.
"""
self.interp_method = "bilinear"
self.max_size = max_size
self.short_edge_length = short_edge_length
def __call__(self, imgs):
img_augs = []
for img in imgs:
h, w = img.shape[:2]
# later: provide list and randomly choose index for resize
size = np.random.randint(self.short_edge_length[0], self.short_edge_length[1] + 1)
if size == 0:
return img
scale = size * 1.0 / min(h, w)
if h < w:
newh, neww = size, scale * w
else:
newh, neww = scale * h, size
if max(newh, neww) > self.max_size:
scale = self.max_size * 1.0 / max(newh, neww)
newh = newh * scale
neww = neww * scale
neww = int(neww + 0.5)
newh = int(newh + 0.5)
if img.dtype == np.uint8:
pil_image = Image.fromarray(img)
pil_image = pil_image.resize((neww, newh), PILImageResampling.BILINEAR)
img = np.asarray(pil_image)
else:
img = img.permute(2, 0, 1).unsqueeze(0) # 3, 0, 1) # hw(c) -> nchw
img = nn.functional.interpolate(
img, (newh, neww), mode=self.interp_method, align_corners=False
).squeeze(0)
img_augs.append(img)
return img_augs
class Preprocess:
def __init__(self, cfg):
self.aug = ResizeShortestEdge([cfg.INPUT.MIN_SIZE_TEST, cfg.INPUT.MIN_SIZE_TEST], cfg.INPUT.MAX_SIZE_TEST)
self.input_format = cfg.INPUT.FORMAT
self.size_divisibility = cfg.SIZE_DIVISIBILITY
self.pad_value = cfg.PAD_VALUE
self.max_image_size = cfg.INPUT.MAX_SIZE_TEST
self.device = cfg.MODEL.DEVICE
self.pixel_std = torch.tensor(cfg.MODEL.PIXEL_STD).to(self.device).view(len(cfg.MODEL.PIXEL_STD), 1, 1)
self.pixel_mean = torch.tensor(cfg.MODEL.PIXEL_MEAN).to(self.device).view(len(cfg.MODEL.PIXEL_STD), 1, 1)
self.normalizer = lambda x: (x - self.pixel_mean) / self.pixel_std
def pad(self, images):
max_size = tuple(max(s) for s in zip(*[img.shape for img in images]))
image_sizes = [im.shape[-2:] for im in images]
images = [
nn.functional.pad(
im,
[0, max_size[-1] - size[1], 0, max_size[-2] - size[0]],
value=self.pad_value,
)
for size, im in zip(image_sizes, images)
]
return torch.stack(images), torch.tensor(image_sizes)
def __call__(self, images, single_image=False):
with torch.no_grad():
if not isinstance(images, list):
images = [images]
if single_image:
assert len(images) == 1
for i in range(len(images)):
if isinstance(images[i], torch.Tensor):
images.insert(i, images.pop(i).to(self.device).float())
elif not isinstance(images[i], torch.Tensor):
images.insert(
i,
torch.as_tensor(img_tensorize(images.pop(i), input_format=self.input_format))
.to(self.device)
.float(),
)
# resize smallest edge
raw_sizes = torch.tensor([im.shape[:2] for im in images])
images = self.aug(images)
# transpose images and convert to torch tensors
# images = [torch.as_tensor(i.astype("float32")).permute(2, 0, 1).to(self.device) for i in images]
# now normalize before pad to avoid useless arithmetic
images = [self.normalizer(x) for x in images]
# now pad them to do the following operations
images, sizes = self.pad(images)
# Normalize
if self.size_divisibility > 0:
raise NotImplementedError()
# pad
scales_yx = torch.true_divide(raw_sizes, sizes)
if single_image:
return images[0], sizes[0], scales_yx[0]
else:
return images, sizes, scales_yx
def _scale_box(boxes, scale_yx):
boxes[:, 0::2] *= scale_yx[:, 1]
boxes[:, 1::2] *= scale_yx[:, 0]
return boxes
def _clip_box(tensor, box_size: Tuple[int, int]):
assert torch.isfinite(tensor).all(), "Box tensor contains infinite or NaN!"
h, w = box_size
tensor[:, 0].clamp_(min=0, max=w)
tensor[:, 1].clamp_(min=0, max=h)
tensor[:, 2].clamp_(min=0, max=w)
tensor[:, 3].clamp_(min=0, max=h)
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/visual_bert/README.md
|
# VisualBERT Demo
This demo shows usage of VisualBERT VQA model and is adapted from LXMERT demo present [here](https://github.com/huggingface/transformers/blob/main/examples/research_projects/lxmert/demo.ipynb).
1. make a virtualenv: ``virtualenv venv`` and activate ``source venv/bin/activate``
2. install reqs: ``pip install -r ./requirements.txt``
3. usage is as shown in demo.ipynb
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/visual_bert/extracting_data.py
|
import getopt
import json
import os
# import numpy as np
import sys
from collections import OrderedDict
import datasets
import numpy as np
import torch
from modeling_frcnn import GeneralizedRCNN
from processing_image import Preprocess
from utils import Config
"""
USAGE:
``python extracting_data.py -i <img_dir> -o <dataset_file>.datasets <batch_size>``
"""
TEST = False
CONFIG = Config.from_pretrained("unc-nlp/frcnn-vg-finetuned")
DEFAULT_SCHEMA = datasets.Features(
OrderedDict(
{
"attr_ids": datasets.Sequence(length=CONFIG.MAX_DETECTIONS, feature=datasets.Value("float32")),
"attr_probs": datasets.Sequence(length=CONFIG.MAX_DETECTIONS, feature=datasets.Value("float32")),
"boxes": datasets.Array2D((CONFIG.MAX_DETECTIONS, 4), dtype="float32"),
"img_id": datasets.Value("int32"),
"obj_ids": datasets.Sequence(length=CONFIG.MAX_DETECTIONS, feature=datasets.Value("float32")),
"obj_probs": datasets.Sequence(length=CONFIG.MAX_DETECTIONS, feature=datasets.Value("float32")),
"roi_features": datasets.Array2D((CONFIG.MAX_DETECTIONS, 2048), dtype="float32"),
"sizes": datasets.Sequence(length=2, feature=datasets.Value("float32")),
"preds_per_image": datasets.Value(dtype="int32"),
}
)
)
class Extract:
def __init__(self, argv=sys.argv[1:]):
inputdir = None
outputfile = None
subset_list = None
batch_size = 1
opts, args = getopt.getopt(argv, "i:o:b:s", ["inputdir=", "outfile=", "batch_size=", "subset_list="])
for opt, arg in opts:
if opt in ("-i", "--inputdir"):
inputdir = arg
elif opt in ("-o", "--outfile"):
outputfile = arg
elif opt in ("-b", "--batch_size"):
batch_size = int(arg)
elif opt in ("-s", "--subset_list"):
subset_list = arg
assert inputdir is not None # and os.path.isdir(inputdir), f"{inputdir}"
assert outputfile is not None and not os.path.isfile(outputfile), f"{outputfile}"
if subset_list is not None:
with open(os.path.realpath(subset_list)) as f:
self.subset_list = {self._vqa_file_split()[0] for x in tryload(f)}
else:
self.subset_list = None
self.config = CONFIG
if torch.cuda.is_available():
self.config.model.device = "cuda"
self.inputdir = os.path.realpath(inputdir)
self.outputfile = os.path.realpath(outputfile)
self.preprocess = Preprocess(self.config)
self.model = GeneralizedRCNN.from_pretrained("unc-nlp/frcnn-vg-finetuned", config=self.config)
self.batch = batch_size if batch_size != 0 else 1
self.schema = DEFAULT_SCHEMA
def _vqa_file_split(self, file):
img_id = int(file.split(".")[0].split("_")[-1])
filepath = os.path.join(self.inputdir, file)
return (img_id, filepath)
@property
def file_generator(self):
batch = []
for i, file in enumerate(os.listdir(self.inputdir)):
if self.subset_list is not None and i not in self.subset_list:
continue
batch.append(self._vqa_file_split(file))
if len(batch) == self.batch:
temp = batch
batch = []
yield list(map(list, zip(*temp)))
for i in range(1):
yield list(map(list, zip(*batch)))
def __call__(self):
# make writer
if not TEST:
writer = datasets.ArrowWriter(features=self.schema, path=self.outputfile)
# do file generator
for i, (img_ids, filepaths) in enumerate(self.file_generator):
images, sizes, scales_yx = self.preprocess(filepaths)
output_dict = self.model(
images,
sizes,
scales_yx=scales_yx,
padding="max_detections",
max_detections=self.config.MAX_DETECTIONS,
pad_value=0,
return_tensors="np",
location="cpu",
)
output_dict["boxes"] = output_dict.pop("normalized_boxes")
if not TEST:
output_dict["img_id"] = np.array(img_ids)
batch = self.schema.encode_batch(output_dict)
writer.write_batch(batch)
if TEST:
break
# finalizer the writer
if not TEST:
num_examples, num_bytes = writer.finalize()
print(f"Success! You wrote {num_examples} entry(s) and {num_bytes >> 20} mb")
def tryload(stream):
try:
data = json.load(stream)
try:
data = list(data.keys())
except Exception:
data = [d["img_id"] for d in data]
except Exception:
try:
data = eval(stream.read())
except Exception:
data = stream.read().split("\n")
return data
if __name__ == "__main__":
extract = Extract(sys.argv[1:])
extract()
if not TEST:
dataset = datasets.Dataset.from_file(extract.outputfile)
# wala!
# print(np.array(dataset[0:2]["roi_features"]).shape)
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/visual_bert/requirements.txt
|
appdirs==1.4.3
argon2-cffi==20.1.0
async-generator==1.10
attrs==20.2.0
backcall==0.2.0
CacheControl==0.12.6
certifi==2023.7.22
cffi==1.14.2
chardet==3.0.4
click==7.1.2
colorama==0.4.3
contextlib2==0.6.0
cycler==0.10.0
datasets==1.0.0
decorator==4.4.2
defusedxml==0.6.0
dill==0.3.2
distlib==0.3.0
distro==1.4.0
entrypoints==0.3
filelock==3.0.12
future==0.18.3
html5lib==1.0.1
idna==2.8
ipaddr==2.2.0
ipykernel==5.3.4
ipython
ipython-genutils==0.2.0
ipywidgets==7.5.1
jedi==0.17.2
Jinja2>=2.11.3
joblib==1.2.0
jsonschema==3.2.0
jupyter==1.0.0
jupyter-client==6.1.7
jupyter-console==6.2.0
jupyter-core==4.6.3
jupyterlab-pygments==0.1.1
kiwisolver==1.2.0
lockfile==0.12.2
MarkupSafe==1.1.1
matplotlib==3.3.1
mistune==2.0.3
msgpack==0.6.2
nbclient==0.5.0
nbconvert==6.5.1
nbformat==5.0.7
nest-asyncio==1.4.0
notebook==6.4.12
numpy==1.22.0
opencv-python==4.4.0.42
packaging==20.3
pandas==1.1.2
pandocfilters==1.4.2
parso==0.7.1
pep517==0.8.2
pexpect==4.8.0
pickleshare==0.7.5
Pillow>=8.1.1
progress==1.5
prometheus-client==0.8.0
prompt-toolkit==3.0.7
ptyprocess==0.6.0
pyaml==20.4.0
pyarrow==1.0.1
pycparser==2.20
Pygments>=2.7.4
pyparsing==2.4.6
pyrsistent==0.16.0
python-dateutil==2.8.1
pytoml==0.1.21
pytz==2020.1
PyYAML>=5.4
pyzmq==19.0.2
qtconsole==4.7.7
QtPy==1.9.0
regex==2020.7.14
requests==2.31.0
retrying==1.3.3
sacremoses==0.0.43
Send2Trash==1.5.0
sentencepiece==0.1.91
six==1.14.0
terminado==0.8.3
testpath==0.4.4
tokenizers==0.8.1rc2
torch==1.6.0
torchvision==0.7.0
tornado==6.3.3
tqdm==4.48.2
traitlets
git+https://github.com/huggingface/transformers.git
urllib3==1.26.18
wcwidth==0.2.5
webencodings==0.5.1
wget==3.2
widgetsnbextension==3.5.1
xxhash==2.0.0
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/visual_bert/utils.py
|
"""
coding=utf-8
Copyright 2018, Antonio Mendoza Hao Tan, Mohit Bansal, Huggingface team :)
Adapted From Facebook Inc, Detectron2
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.import copy
"""
import copy
import fnmatch
import json
import os
import pickle as pkl
import shutil
import sys
import tarfile
import tempfile
from collections import OrderedDict
from contextlib import contextmanager
from functools import partial
from io import BytesIO
from pathlib import Path
from urllib.parse import urlparse
from zipfile import ZipFile, is_zipfile
import cv2
import numpy as np
import requests
import wget
from filelock import FileLock
from huggingface_hub.utils import insecure_hashlib
from PIL import Image
from tqdm.auto import tqdm
from yaml import Loader, dump, load
try:
import torch
_torch_available = True
except ImportError:
_torch_available = False
try:
from torch.hub import _get_torch_home
torch_cache_home = _get_torch_home()
except ImportError:
torch_cache_home = os.path.expanduser(
os.getenv("TORCH_HOME", os.path.join(os.getenv("XDG_CACHE_HOME", "~/.cache"), "torch"))
)
default_cache_path = os.path.join(torch_cache_home, "transformers")
CLOUDFRONT_DISTRIB_PREFIX = "https://cdn.huggingface.co"
S3_BUCKET_PREFIX = "https://s3.amazonaws.com/models.huggingface.co/bert"
PATH = "/".join(str(Path(__file__).resolve()).split("/")[:-1])
CONFIG = os.path.join(PATH, "config.yaml")
ATTRIBUTES = os.path.join(PATH, "attributes.txt")
OBJECTS = os.path.join(PATH, "objects.txt")
PYTORCH_PRETRAINED_BERT_CACHE = os.getenv("PYTORCH_PRETRAINED_BERT_CACHE", default_cache_path)
PYTORCH_TRANSFORMERS_CACHE = os.getenv("PYTORCH_TRANSFORMERS_CACHE", PYTORCH_PRETRAINED_BERT_CACHE)
TRANSFORMERS_CACHE = os.getenv("TRANSFORMERS_CACHE", PYTORCH_TRANSFORMERS_CACHE)
WEIGHTS_NAME = "pytorch_model.bin"
CONFIG_NAME = "config.yaml"
def load_labels(objs=OBJECTS, attrs=ATTRIBUTES):
vg_classes = []
with open(objs) as f:
for object in f.readlines():
vg_classes.append(object.split(",")[0].lower().strip())
vg_attrs = []
with open(attrs) as f:
for object in f.readlines():
vg_attrs.append(object.split(",")[0].lower().strip())
return vg_classes, vg_attrs
def load_checkpoint(ckp):
r = OrderedDict()
with open(ckp, "rb") as f:
ckp = pkl.load(f)["model"]
for k in copy.deepcopy(list(ckp.keys())):
v = ckp.pop(k)
if isinstance(v, np.ndarray):
v = torch.tensor(v)
else:
assert isinstance(v, torch.tensor), type(v)
r[k] = v
return r
class Config:
_pointer = {}
def __init__(self, dictionary: dict, name: str = "root", level=0):
self._name = name
self._level = level
d = {}
for k, v in dictionary.items():
if v is None:
raise ValueError()
k = copy.deepcopy(k)
v = copy.deepcopy(v)
if isinstance(v, dict):
v = Config(v, name=k, level=level + 1)
d[k] = v
setattr(self, k, v)
self._pointer = d
def __repr__(self):
return str(list((self._pointer.keys())))
def __setattr__(self, key, val):
self.__dict__[key] = val
self.__dict__[key.upper()] = val
levels = key.split(".")
last_level = len(levels) - 1
pointer = self._pointer
if len(levels) > 1:
for i, l in enumerate(levels):
if hasattr(self, l) and isinstance(getattr(self, l), Config):
setattr(getattr(self, l), ".".join(levels[i:]), val)
if l == last_level:
pointer[l] = val
else:
pointer = pointer[l]
def to_dict(self):
return self._pointer
def dump_yaml(self, data, file_name):
with open(f"{file_name}", "w") as stream:
dump(data, stream)
def dump_json(self, data, file_name):
with open(f"{file_name}", "w") as stream:
json.dump(data, stream)
@staticmethod
def load_yaml(config):
with open(config) as stream:
data = load(stream, Loader=Loader)
return data
def __str__(self):
t = " "
if self._name != "root":
r = f"{t * (self._level-1)}{self._name}:\n"
else:
r = ""
level = self._level
for i, (k, v) in enumerate(self._pointer.items()):
if isinstance(v, Config):
r += f"{t * (self._level)}{v}\n"
self._level += 1
else:
r += f"{t * (self._level)}{k}: {v} ({type(v).__name__})\n"
self._level = level
return r[:-1]
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path: str, **kwargs):
config_dict, kwargs = cls.get_config_dict(pretrained_model_name_or_path, **kwargs)
return cls(config_dict)
@classmethod
def get_config_dict(cls, pretrained_model_name_or_path: str, **kwargs):
cache_dir = kwargs.pop("cache_dir", None)
force_download = kwargs.pop("force_download", False)
resume_download = kwargs.pop("resume_download", False)
proxies = kwargs.pop("proxies", None)
local_files_only = kwargs.pop("local_files_only", False)
if os.path.isdir(pretrained_model_name_or_path):
config_file = os.path.join(pretrained_model_name_or_path, CONFIG_NAME)
elif os.path.isfile(pretrained_model_name_or_path) or is_remote_url(pretrained_model_name_or_path):
config_file = pretrained_model_name_or_path
else:
config_file = hf_bucket_url(pretrained_model_name_or_path, filename=CONFIG_NAME, use_cdn=False)
try:
# Load from URL or cache if already cached
resolved_config_file = cached_path(
config_file,
cache_dir=cache_dir,
force_download=force_download,
proxies=proxies,
resume_download=resume_download,
local_files_only=local_files_only,
)
# Load config dict
if resolved_config_file is None:
raise EnvironmentError
config_file = Config.load_yaml(resolved_config_file)
except EnvironmentError:
msg = "Can't load config for"
raise EnvironmentError(msg)
if resolved_config_file == config_file:
print("loading configuration file from path")
else:
print("loading configuration file cache")
return Config.load_yaml(resolved_config_file), kwargs
# quick compare tensors
def compare(in_tensor):
out_tensor = torch.load("dump.pt", map_location=in_tensor.device)
n1 = in_tensor.numpy()
n2 = out_tensor.numpy()[0]
print(n1.shape, n1[0, 0, :5])
print(n2.shape, n2[0, 0, :5])
assert np.allclose(n1, n2, rtol=0.01, atol=0.1), (
f"{sum([1 for x in np.isclose(n1, n2, rtol=0.01, atol=0.1).flatten() if x is False])/len(n1.flatten())*100:.4f} %"
" element-wise mismatch"
)
raise Exception("tensors are all good")
# Hugging face functions below
def is_remote_url(url_or_filename):
parsed = urlparse(url_or_filename)
return parsed.scheme in ("http", "https")
def hf_bucket_url(model_id: str, filename: str, use_cdn=True) -> str:
endpoint = CLOUDFRONT_DISTRIB_PREFIX if use_cdn else S3_BUCKET_PREFIX
legacy_format = "/" not in model_id
if legacy_format:
return f"{endpoint}/{model_id}-{filename}"
else:
return f"{endpoint}/{model_id}/{filename}"
def http_get(
url,
temp_file,
proxies=None,
resume_size=0,
user_agent=None,
):
ua = "python/{}".format(sys.version.split()[0])
if _torch_available:
ua += "; torch/{}".format(torch.__version__)
if isinstance(user_agent, dict):
ua += "; " + "; ".join("{}/{}".format(k, v) for k, v in user_agent.items())
elif isinstance(user_agent, str):
ua += "; " + user_agent
headers = {"user-agent": ua}
if resume_size > 0:
headers["Range"] = "bytes=%d-" % (resume_size,)
response = requests.get(url, stream=True, proxies=proxies, headers=headers)
if response.status_code == 416: # Range not satisfiable
return
content_length = response.headers.get("Content-Length")
total = resume_size + int(content_length) if content_length is not None else None
progress = tqdm(
unit="B",
unit_scale=True,
total=total,
initial=resume_size,
desc="Downloading",
)
for chunk in response.iter_content(chunk_size=1024):
if chunk: # filter out keep-alive new chunks
progress.update(len(chunk))
temp_file.write(chunk)
progress.close()
def get_from_cache(
url,
cache_dir=None,
force_download=False,
proxies=None,
etag_timeout=10,
resume_download=False,
user_agent=None,
local_files_only=False,
):
if cache_dir is None:
cache_dir = TRANSFORMERS_CACHE
if isinstance(cache_dir, Path):
cache_dir = str(cache_dir)
os.makedirs(cache_dir, exist_ok=True)
etag = None
if not local_files_only:
try:
response = requests.head(url, allow_redirects=True, proxies=proxies, timeout=etag_timeout)
if response.status_code == 200:
etag = response.headers.get("ETag")
except (EnvironmentError, requests.exceptions.Timeout):
# etag is already None
pass
filename = url_to_filename(url, etag)
# get cache path to put the file
cache_path = os.path.join(cache_dir, filename)
# etag is None = we don't have a connection, or url doesn't exist, or is otherwise inaccessible.
# try to get the last downloaded one
if etag is None:
if os.path.exists(cache_path):
return cache_path
else:
matching_files = [
file
for file in fnmatch.filter(os.listdir(cache_dir), filename + ".*")
if not file.endswith(".json") and not file.endswith(".lock")
]
if len(matching_files) > 0:
return os.path.join(cache_dir, matching_files[-1])
else:
# If files cannot be found and local_files_only=True,
# the models might've been found if local_files_only=False
# Notify the user about that
if local_files_only:
raise ValueError(
"Cannot find the requested files in the cached path and outgoing traffic has been"
" disabled. To enable model look-ups and downloads online, set 'local_files_only'"
" to False."
)
return None
# From now on, etag is not None.
if os.path.exists(cache_path) and not force_download:
return cache_path
# Prevent parallel downloads of the same file with a lock.
lock_path = cache_path + ".lock"
with FileLock(lock_path):
# If the download just completed while the lock was activated.
if os.path.exists(cache_path) and not force_download:
# Even if returning early like here, the lock will be released.
return cache_path
if resume_download:
incomplete_path = cache_path + ".incomplete"
@contextmanager
def _resumable_file_manager():
with open(incomplete_path, "a+b") as f:
yield f
temp_file_manager = _resumable_file_manager
if os.path.exists(incomplete_path):
resume_size = os.stat(incomplete_path).st_size
else:
resume_size = 0
else:
temp_file_manager = partial(tempfile.NamedTemporaryFile, dir=cache_dir, delete=False)
resume_size = 0
# Download to temporary file, then copy to cache dir once finished.
# Otherwise you get corrupt cache entries if the download gets interrupted.
with temp_file_manager() as temp_file:
print(
"%s not found in cache or force_download set to True, downloading to %s",
url,
temp_file.name,
)
http_get(
url,
temp_file,
proxies=proxies,
resume_size=resume_size,
user_agent=user_agent,
)
os.replace(temp_file.name, cache_path)
meta = {"url": url, "etag": etag}
meta_path = cache_path + ".json"
with open(meta_path, "w") as meta_file:
json.dump(meta, meta_file)
return cache_path
def url_to_filename(url, etag=None):
url_bytes = url.encode("utf-8")
url_hash = insecure_hashlib.sha256(url_bytes)
filename = url_hash.hexdigest()
if etag:
etag_bytes = etag.encode("utf-8")
etag_hash = insecure_hashlib.sha256(etag_bytes)
filename += "." + etag_hash.hexdigest()
if url.endswith(".h5"):
filename += ".h5"
return filename
def cached_path(
url_or_filename,
cache_dir=None,
force_download=False,
proxies=None,
resume_download=False,
user_agent=None,
extract_compressed_file=False,
force_extract=False,
local_files_only=False,
):
if cache_dir is None:
cache_dir = TRANSFORMERS_CACHE
if isinstance(url_or_filename, Path):
url_or_filename = str(url_or_filename)
if isinstance(cache_dir, Path):
cache_dir = str(cache_dir)
if is_remote_url(url_or_filename):
# URL, so get it from the cache (downloading if necessary)
output_path = get_from_cache(
url_or_filename,
cache_dir=cache_dir,
force_download=force_download,
proxies=proxies,
resume_download=resume_download,
user_agent=user_agent,
local_files_only=local_files_only,
)
elif os.path.exists(url_or_filename):
# File, and it exists.
output_path = url_or_filename
elif urlparse(url_or_filename).scheme == "":
# File, but it doesn't exist.
raise EnvironmentError("file {} not found".format(url_or_filename))
else:
# Something unknown
raise ValueError("unable to parse {} as a URL or as a local path".format(url_or_filename))
if extract_compressed_file:
if not is_zipfile(output_path) and not tarfile.is_tarfile(output_path):
return output_path
# Path where we extract compressed archives
# We avoid '.' in dir name and add "-extracted" at the end: "./model.zip" => "./model-zip-extracted/"
output_dir, output_file = os.path.split(output_path)
output_extract_dir_name = output_file.replace(".", "-") + "-extracted"
output_path_extracted = os.path.join(output_dir, output_extract_dir_name)
if os.path.isdir(output_path_extracted) and os.listdir(output_path_extracted) and not force_extract:
return output_path_extracted
# Prevent parallel extractions
lock_path = output_path + ".lock"
with FileLock(lock_path):
shutil.rmtree(output_path_extracted, ignore_errors=True)
os.makedirs(output_path_extracted)
if is_zipfile(output_path):
with ZipFile(output_path, "r") as zip_file:
zip_file.extractall(output_path_extracted)
zip_file.close()
elif tarfile.is_tarfile(output_path):
tar_file = tarfile.open(output_path)
tar_file.extractall(output_path_extracted)
tar_file.close()
else:
raise EnvironmentError("Archive format of {} could not be identified".format(output_path))
return output_path_extracted
return output_path
def get_data(query, delim=","):
assert isinstance(query, str)
if os.path.isfile(query):
with open(query) as f:
data = eval(f.read())
else:
req = requests.get(query)
try:
data = requests.json()
except Exception:
data = req.content.decode()
assert data is not None, "could not connect"
try:
data = eval(data)
except Exception:
data = data.split("\n")
req.close()
return data
def get_image_from_url(url):
response = requests.get(url)
img = np.array(Image.open(BytesIO(response.content)))
return img
# to load legacy frcnn checkpoint from detectron
def load_frcnn_pkl_from_url(url):
fn = url.split("/")[-1]
if fn not in os.listdir(os.getcwd()):
wget.download(url)
with open(fn, "rb") as stream:
weights = pkl.load(stream)
model = weights.pop("model")
new = {}
for k, v in model.items():
new[k] = torch.from_numpy(v)
if "running_var" in k:
zero = torch.tensor([0])
k2 = k.replace("running_var", "num_batches_tracked")
new[k2] = zero
return new
def get_demo_path():
print(f"{os.path.abspath(os.path.join(PATH, os.pardir))}/demo.ipynb")
def img_tensorize(im, input_format="RGB"):
assert isinstance(im, str)
if os.path.isfile(im):
img = cv2.imread(im)
else:
img = get_image_from_url(im)
assert img is not None, f"could not connect to: {im}"
img = cv2.cvtColor(img, cv2.COLOR_BGR2RGB)
if input_format == "RGB":
img = img[:, :, ::-1]
return img
def chunk(images, batch=1):
return (images[i : i + batch] for i in range(0, len(images), batch))
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/visual_bert/modeling_frcnn.py
|
"""
coding=utf-8
Copyright 2018, Antonio Mendoza Hao Tan, Mohit Bansal
Adapted From Facebook Inc, Detectron2 && Huggingface Co.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.import copy
"""
import itertools
import math
import os
from abc import ABCMeta, abstractmethod
from collections import OrderedDict, namedtuple
from typing import Dict, List, Tuple
import numpy as np
import torch
from torch import nn
from torch.nn.modules.batchnorm import BatchNorm2d
from torchvision.ops import RoIPool
from torchvision.ops.boxes import batched_nms, nms
from utils import WEIGHTS_NAME, Config, cached_path, hf_bucket_url, is_remote_url, load_checkpoint
# other:
def norm_box(boxes, raw_sizes):
if not isinstance(boxes, torch.Tensor):
normalized_boxes = boxes.copy()
else:
normalized_boxes = boxes.clone()
normalized_boxes[:, :, (0, 2)] /= raw_sizes[:, 1]
normalized_boxes[:, :, (1, 3)] /= raw_sizes[:, 0]
return normalized_boxes
def pad_list_tensors(
list_tensors,
preds_per_image,
max_detections=None,
return_tensors=None,
padding=None,
pad_value=0,
location=None,
):
"""
location will always be cpu for np tensors
"""
if location is None:
location = "cpu"
assert return_tensors in {"pt", "np", None}
assert padding in {"max_detections", "max_batch", None}
new = []
if padding is None:
if return_tensors is None:
return list_tensors
elif return_tensors == "pt":
if not isinstance(list_tensors, torch.Tensor):
return torch.stack(list_tensors).to(location)
else:
return list_tensors.to(location)
else:
if not isinstance(list_tensors, list):
return np.array(list_tensors.to(location))
else:
return list_tensors.to(location)
if padding == "max_detections":
assert max_detections is not None, "specify max number of detections per batch"
elif padding == "max_batch":
max_detections = max(preds_per_image)
for i in range(len(list_tensors)):
too_small = False
tensor_i = list_tensors.pop(0)
if tensor_i.ndim < 2:
too_small = True
tensor_i = tensor_i.unsqueeze(-1)
assert isinstance(tensor_i, torch.Tensor)
tensor_i = nn.functional.pad(
input=tensor_i,
pad=(0, 0, 0, max_detections - preds_per_image[i]),
mode="constant",
value=pad_value,
)
if too_small:
tensor_i = tensor_i.squeeze(-1)
if return_tensors is None:
if location == "cpu":
tensor_i = tensor_i.cpu()
tensor_i = tensor_i.tolist()
if return_tensors == "np":
if location == "cpu":
tensor_i = tensor_i.cpu()
tensor_i = tensor_i.numpy()
else:
if location == "cpu":
tensor_i = tensor_i.cpu()
new.append(tensor_i)
if return_tensors == "np":
return np.stack(new, axis=0)
elif return_tensors == "pt" and not isinstance(new, torch.Tensor):
return torch.stack(new, dim=0)
else:
return list_tensors
def do_nms(boxes, scores, image_shape, score_thresh, nms_thresh, mind, maxd):
scores = scores[:, :-1]
num_bbox_reg_classes = boxes.shape[1] // 4
# Convert to Boxes to use the `clip` function ...
boxes = boxes.reshape(-1, 4)
_clip_box(boxes, image_shape)
boxes = boxes.view(-1, num_bbox_reg_classes, 4) # R x C x 4
# Select max scores
max_scores, max_classes = scores.max(1) # R x C --> R
num_objs = boxes.size(0)
boxes = boxes.view(-1, 4)
idxs = torch.arange(num_objs).to(boxes.device) * num_bbox_reg_classes + max_classes
max_boxes = boxes[idxs] # Select max boxes according to the max scores.
# Apply NMS
keep = nms(max_boxes, max_scores, nms_thresh)
keep = keep[:maxd]
if keep.shape[-1] >= mind and keep.shape[-1] <= maxd:
max_boxes, max_scores = max_boxes[keep], max_scores[keep]
classes = max_classes[keep]
return max_boxes, max_scores, classes, keep
else:
return None
# Helper Functions
def _clip_box(tensor, box_size: Tuple[int, int]):
assert torch.isfinite(tensor).all(), "Box tensor contains infinite or NaN!"
h, w = box_size
tensor[:, 0].clamp_(min=0, max=w)
tensor[:, 1].clamp_(min=0, max=h)
tensor[:, 2].clamp_(min=0, max=w)
tensor[:, 3].clamp_(min=0, max=h)
def _nonempty_boxes(box, threshold: float = 0.0) -> torch.Tensor:
widths = box[:, 2] - box[:, 0]
heights = box[:, 3] - box[:, 1]
keep = (widths > threshold) & (heights > threshold)
return keep
def get_norm(norm, out_channels):
if isinstance(norm, str):
if len(norm) == 0:
return None
norm = {
"BN": BatchNorm2d,
"GN": lambda channels: nn.GroupNorm(32, channels),
"nnSyncBN": nn.SyncBatchNorm, # keep for debugging
"": lambda x: x,
}[norm]
return norm(out_channels)
def _create_grid_offsets(size: List[int], stride: int, offset: float, device):
grid_height, grid_width = size
shifts_x = torch.arange(
offset * stride,
grid_width * stride,
step=stride,
dtype=torch.float32,
device=device,
)
shifts_y = torch.arange(
offset * stride,
grid_height * stride,
step=stride,
dtype=torch.float32,
device=device,
)
shift_y, shift_x = torch.meshgrid(shifts_y, shifts_x)
shift_x = shift_x.reshape(-1)
shift_y = shift_y.reshape(-1)
return shift_x, shift_y
def build_backbone(cfg):
input_shape = ShapeSpec(channels=len(cfg.MODEL.PIXEL_MEAN))
norm = cfg.RESNETS.NORM
stem = BasicStem(
in_channels=input_shape.channels,
out_channels=cfg.RESNETS.STEM_OUT_CHANNELS,
norm=norm,
caffe_maxpool=cfg.MODEL.MAX_POOL,
)
freeze_at = cfg.BACKBONE.FREEZE_AT
if freeze_at >= 1:
for p in stem.parameters():
p.requires_grad = False
out_features = cfg.RESNETS.OUT_FEATURES
depth = cfg.RESNETS.DEPTH
num_groups = cfg.RESNETS.NUM_GROUPS
width_per_group = cfg.RESNETS.WIDTH_PER_GROUP
bottleneck_channels = num_groups * width_per_group
in_channels = cfg.RESNETS.STEM_OUT_CHANNELS
out_channels = cfg.RESNETS.RES2_OUT_CHANNELS
stride_in_1x1 = cfg.RESNETS.STRIDE_IN_1X1
res5_dilation = cfg.RESNETS.RES5_DILATION
assert res5_dilation in {1, 2}, "res5_dilation cannot be {}.".format(res5_dilation)
num_blocks_per_stage = {50: [3, 4, 6, 3], 101: [3, 4, 23, 3], 152: [3, 8, 36, 3]}[depth]
stages = []
out_stage_idx = [{"res2": 2, "res3": 3, "res4": 4, "res5": 5}[f] for f in out_features]
max_stage_idx = max(out_stage_idx)
for idx, stage_idx in enumerate(range(2, max_stage_idx + 1)):
dilation = res5_dilation if stage_idx == 5 else 1
first_stride = 1 if idx == 0 or (stage_idx == 5 and dilation == 2) else 2
stage_kargs = {
"num_blocks": num_blocks_per_stage[idx],
"first_stride": first_stride,
"in_channels": in_channels,
"bottleneck_channels": bottleneck_channels,
"out_channels": out_channels,
"num_groups": num_groups,
"norm": norm,
"stride_in_1x1": stride_in_1x1,
"dilation": dilation,
}
stage_kargs["block_class"] = BottleneckBlock
blocks = ResNet.make_stage(**stage_kargs)
in_channels = out_channels
out_channels *= 2
bottleneck_channels *= 2
if freeze_at >= stage_idx:
for block in blocks:
block.freeze()
stages.append(blocks)
return ResNet(stem, stages, out_features=out_features)
def find_top_rpn_proposals(
proposals,
pred_objectness_logits,
images,
image_sizes,
nms_thresh,
pre_nms_topk,
post_nms_topk,
min_box_side_len,
training,
):
"""Args:
proposals (list[Tensor]): (L, N, Hi*Wi*A, 4).
pred_objectness_logits: tensors of length L.
nms_thresh (float): IoU threshold to use for NMS
pre_nms_topk (int): before nms
post_nms_topk (int): after nms
min_box_side_len (float): minimum proposal box side
training (bool): True if proposals are to be used in training,
Returns:
results (List[Dict]): stores post_nms_topk object proposals for image i.
"""
num_images = len(images)
device = proposals[0].device
# 1. Select top-k anchor for every level and every image
topk_scores = [] # #lvl Tensor, each of shape N x topk
topk_proposals = []
level_ids = [] # #lvl Tensor, each of shape (topk,)
batch_idx = torch.arange(num_images, device=device)
for level_id, proposals_i, logits_i in zip(itertools.count(), proposals, pred_objectness_logits):
Hi_Wi_A = logits_i.shape[1]
num_proposals_i = min(pre_nms_topk, Hi_Wi_A)
# sort is faster than topk (https://github.com/pytorch/pytorch/issues/22812)
# topk_scores_i, topk_idx = logits_i.topk(num_proposals_i, dim=1)
logits_i, idx = logits_i.sort(descending=True, dim=1)
topk_scores_i = logits_i[batch_idx, :num_proposals_i]
topk_idx = idx[batch_idx, :num_proposals_i]
# each is N x topk
topk_proposals_i = proposals_i[batch_idx[:, None], topk_idx] # N x topk x 4
topk_proposals.append(topk_proposals_i)
topk_scores.append(topk_scores_i)
level_ids.append(torch.full((num_proposals_i,), level_id, dtype=torch.int64, device=device))
# 2. Concat all levels together
topk_scores = torch.cat(topk_scores, dim=1)
topk_proposals = torch.cat(topk_proposals, dim=1)
level_ids = torch.cat(level_ids, dim=0)
# if I change to batched_nms, I wonder if this will make a difference
# 3. For each image, run a per-level NMS, and choose topk results.
results = []
for n, image_size in enumerate(image_sizes):
boxes = topk_proposals[n]
scores_per_img = topk_scores[n]
# I will have to take a look at the boxes clip method
_clip_box(boxes, image_size)
# filter empty boxes
keep = _nonempty_boxes(boxes, threshold=min_box_side_len)
lvl = level_ids
if keep.sum().item() != len(boxes):
boxes, scores_per_img, lvl = (
boxes[keep],
scores_per_img[keep],
level_ids[keep],
)
keep = batched_nms(boxes, scores_per_img, lvl, nms_thresh)
keep = keep[:post_nms_topk]
res = (boxes[keep], scores_per_img[keep])
results.append(res)
# I wonder if it would be possible for me to pad all these things.
return results
def subsample_labels(labels, num_samples, positive_fraction, bg_label):
"""
Returns:
pos_idx, neg_idx (Tensor):
1D vector of indices. The total length of both is `num_samples` or fewer.
"""
positive = torch.nonzero((labels != -1) & (labels != bg_label)).squeeze(1)
negative = torch.nonzero(labels == bg_label).squeeze(1)
num_pos = int(num_samples * positive_fraction)
# protect against not enough positive examples
num_pos = min(positive.numel(), num_pos)
num_neg = num_samples - num_pos
# protect against not enough negative examples
num_neg = min(negative.numel(), num_neg)
# randomly select positive and negative examples
perm1 = torch.randperm(positive.numel(), device=positive.device)[:num_pos]
perm2 = torch.randperm(negative.numel(), device=negative.device)[:num_neg]
pos_idx = positive[perm1]
neg_idx = negative[perm2]
return pos_idx, neg_idx
def add_ground_truth_to_proposals(gt_boxes, proposals):
raise NotImplementedError()
def add_ground_truth_to_proposals_single_image(gt_boxes, proposals):
raise NotImplementedError()
def _fmt_box_list(box_tensor, batch_index: int):
repeated_index = torch.full(
(len(box_tensor), 1),
batch_index,
dtype=box_tensor.dtype,
device=box_tensor.device,
)
return torch.cat((repeated_index, box_tensor), dim=1)
def convert_boxes_to_pooler_format(box_lists: List[torch.Tensor]):
pooler_fmt_boxes = torch.cat(
[_fmt_box_list(box_list, i) for i, box_list in enumerate(box_lists)],
dim=0,
)
return pooler_fmt_boxes
def assign_boxes_to_levels(
box_lists: List[torch.Tensor],
min_level: int,
max_level: int,
canonical_box_size: int,
canonical_level: int,
):
box_sizes = torch.sqrt(torch.cat([boxes.area() for boxes in box_lists]))
# Eqn.(1) in FPN paper
level_assignments = torch.floor(canonical_level + torch.log2(box_sizes / canonical_box_size + 1e-8))
# clamp level to (min, max), in case the box size is too large or too small
# for the available feature maps
level_assignments = torch.clamp(level_assignments, min=min_level, max=max_level)
return level_assignments.to(torch.int64) - min_level
# Helper Classes
class _NewEmptyTensorOp(torch.autograd.Function):
@staticmethod
def forward(ctx, x, new_shape):
ctx.shape = x.shape
return x.new_empty(new_shape)
@staticmethod
def backward(ctx, grad):
shape = ctx.shape
return _NewEmptyTensorOp.apply(grad, shape), None
class ShapeSpec(namedtuple("_ShapeSpec", ["channels", "height", "width", "stride"])):
def __new__(cls, *, channels=None, height=None, width=None, stride=None):
return super().__new__(cls, channels, height, width, stride)
class Box2BoxTransform(object):
"""
This R-CNN transformation scales the box's width and height
by exp(dw), exp(dh) and shifts a box's center by the offset
(dx * width, dy * height).
"""
def __init__(self, weights: Tuple[float, float, float, float], scale_clamp: float = None):
"""
Args:
weights (4-element tuple): Scaling factors that are applied to the
(dx, dy, dw, dh) deltas. In Fast R-CNN, these were originally set
such that the deltas have unit variance; now they are treated as
hyperparameters of the system.
scale_clamp (float): When predicting deltas, the predicted box scaling
factors (dw and dh) are clamped such that they are <= scale_clamp.
"""
self.weights = weights
if scale_clamp is not None:
self.scale_clamp = scale_clamp
else:
"""
Value for clamping large dw and dh predictions.
The heuristic is that we clamp such that dw and dh are no larger
than what would transform a 16px box into a 1000px box
(based on a small anchor, 16px, and a typical image size, 1000px).
"""
self.scale_clamp = math.log(1000.0 / 16)
def get_deltas(self, src_boxes, target_boxes):
"""
Get box regression transformation deltas (dx, dy, dw, dh) that can be used
to transform the `src_boxes` into the `target_boxes`. That is, the relation
``target_boxes == self.apply_deltas(deltas, src_boxes)`` is true (unless
any delta is too large and is clamped).
Args:
src_boxes (Tensor): source boxes, e.g., object proposals
target_boxes (Tensor): target of the transformation, e.g., ground-truth
boxes.
"""
assert isinstance(src_boxes, torch.Tensor), type(src_boxes)
assert isinstance(target_boxes, torch.Tensor), type(target_boxes)
src_widths = src_boxes[:, 2] - src_boxes[:, 0]
src_heights = src_boxes[:, 3] - src_boxes[:, 1]
src_ctr_x = src_boxes[:, 0] + 0.5 * src_widths
src_ctr_y = src_boxes[:, 1] + 0.5 * src_heights
target_widths = target_boxes[:, 2] - target_boxes[:, 0]
target_heights = target_boxes[:, 3] - target_boxes[:, 1]
target_ctr_x = target_boxes[:, 0] + 0.5 * target_widths
target_ctr_y = target_boxes[:, 1] + 0.5 * target_heights
wx, wy, ww, wh = self.weights
dx = wx * (target_ctr_x - src_ctr_x) / src_widths
dy = wy * (target_ctr_y - src_ctr_y) / src_heights
dw = ww * torch.log(target_widths / src_widths)
dh = wh * torch.log(target_heights / src_heights)
deltas = torch.stack((dx, dy, dw, dh), dim=1)
assert (src_widths > 0).all().item(), "Input boxes to Box2BoxTransform are not valid!"
return deltas
def apply_deltas(self, deltas, boxes):
"""
Apply transformation `deltas` (dx, dy, dw, dh) to `boxes`.
Args:
deltas (Tensor): transformation deltas of shape (N, k*4), where k >= 1.
deltas[i] represents k potentially different class-specific
box transformations for the single box boxes[i].
boxes (Tensor): boxes to transform, of shape (N, 4)
"""
boxes = boxes.to(deltas.dtype)
widths = boxes[:, 2] - boxes[:, 0]
heights = boxes[:, 3] - boxes[:, 1]
ctr_x = boxes[:, 0] + 0.5 * widths
ctr_y = boxes[:, 1] + 0.5 * heights
wx, wy, ww, wh = self.weights
dx = deltas[:, 0::4] / wx
dy = deltas[:, 1::4] / wy
dw = deltas[:, 2::4] / ww
dh = deltas[:, 3::4] / wh
# Prevent sending too large values into torch.exp()
dw = torch.clamp(dw, max=self.scale_clamp)
dh = torch.clamp(dh, max=self.scale_clamp)
pred_ctr_x = dx * widths[:, None] + ctr_x[:, None]
pred_ctr_y = dy * heights[:, None] + ctr_y[:, None]
pred_w = torch.exp(dw) * widths[:, None]
pred_h = torch.exp(dh) * heights[:, None]
pred_boxes = torch.zeros_like(deltas)
pred_boxes[:, 0::4] = pred_ctr_x - 0.5 * pred_w # x1
pred_boxes[:, 1::4] = pred_ctr_y - 0.5 * pred_h # y1
pred_boxes[:, 2::4] = pred_ctr_x + 0.5 * pred_w # x2
pred_boxes[:, 3::4] = pred_ctr_y + 0.5 * pred_h # y2
return pred_boxes
class Matcher(object):
"""
This class assigns to each predicted "element" (e.g., a box) a ground-truth
element. Each predicted element will have exactly zero or one matches; each
ground-truth element may be matched to zero or more predicted elements.
The matching is determined by the MxN match_quality_matrix, that characterizes
how well each (ground-truth, prediction)-pair match each other. For example,
if the elements are boxes, this matrix may contain box intersection-over-union
overlap values.
The matcher returns (a) a vector of length N containing the index of the
ground-truth element m in [0, M) that matches to prediction n in [0, N).
(b) a vector of length N containing the labels for each prediction.
"""
def __init__(
self,
thresholds: List[float],
labels: List[int],
allow_low_quality_matches: bool = False,
):
"""
Args:
thresholds (list): a list of thresholds used to stratify predictions
into levels.
labels (list): a list of values to label predictions belonging at
each level. A label can be one of {-1, 0, 1} signifying
{ignore, negative class, positive class}, respectively.
allow_low_quality_matches (bool): if True, produce additional matches or predictions with maximum match quality lower than high_threshold.
For example, thresholds = [0.3, 0.5] labels = [0, -1, 1] All predictions with iou < 0.3 will be marked with 0 and
thus will be considered as false positives while training. All predictions with 0.3 <= iou < 0.5 will be marked with -1 and
thus will be ignored. All predictions with 0.5 <= iou will be marked with 1 and thus will be considered as true positives.
"""
thresholds = thresholds[:]
assert thresholds[0] > 0
thresholds.insert(0, -float("inf"))
thresholds.append(float("inf"))
assert all(low <= high for (low, high) in zip(thresholds[:-1], thresholds[1:]))
assert all(label_i in [-1, 0, 1] for label_i in labels)
assert len(labels) == len(thresholds) - 1
self.thresholds = thresholds
self.labels = labels
self.allow_low_quality_matches = allow_low_quality_matches
def __call__(self, match_quality_matrix):
"""
Args:
match_quality_matrix (Tensor[float]): an MxN tensor, containing the pairwise quality between M ground-truth elements and N predicted
elements. All elements must be >= 0 (due to the us of `torch.nonzero` for selecting indices in :meth:`set_low_quality_matches_`).
Returns:
matches (Tensor[int64]): a vector of length N, where matches[i] is a matched ground-truth index in [0, M)
match_labels (Tensor[int8]): a vector of length N, where pred_labels[i] indicates true or false positive or ignored
"""
assert match_quality_matrix.dim() == 2
if match_quality_matrix.numel() == 0:
default_matches = match_quality_matrix.new_full((match_quality_matrix.size(1),), 0, dtype=torch.int64)
# When no gt boxes exist, we define IOU = 0 and therefore set labels
# to `self.labels[0]`, which usually defaults to background class 0
# To choose to ignore instead,
# can make labels=[-1,0,-1,1] + set appropriate thresholds
default_match_labels = match_quality_matrix.new_full(
(match_quality_matrix.size(1),), self.labels[0], dtype=torch.int8
)
return default_matches, default_match_labels
assert torch.all(match_quality_matrix >= 0)
# match_quality_matrix is M (gt) x N (predicted)
# Max over gt elements (dim 0) to find best gt candidate for each prediction
matched_vals, matches = match_quality_matrix.max(dim=0)
match_labels = matches.new_full(matches.size(), 1, dtype=torch.int8)
for l, low, high in zip(self.labels, self.thresholds[:-1], self.thresholds[1:]):
low_high = (matched_vals >= low) & (matched_vals < high)
match_labels[low_high] = l
if self.allow_low_quality_matches:
self.set_low_quality_matches_(match_labels, match_quality_matrix)
return matches, match_labels
def set_low_quality_matches_(self, match_labels, match_quality_matrix):
"""
Produce additional matches for predictions that have only low-quality matches.
Specifically, for each ground-truth G find the set of predictions that have
maximum overlap with it (including ties); for each prediction in that set, if
it is unmatched, then match it to the ground-truth G.
This function implements the RPN assignment case (i)
in Sec. 3.1.2 of Faster R-CNN.
"""
# For each gt, find the prediction with which it has highest quality
highest_quality_foreach_gt, _ = match_quality_matrix.max(dim=1)
# Find the highest quality match available, even if it is low, including ties.
# Note that the matches qualities must be positive due to the use of
# `torch.nonzero`.
of_quality_inds = match_quality_matrix == highest_quality_foreach_gt[:, None]
if of_quality_inds.dim() == 0:
(_, pred_inds_with_highest_quality) = of_quality_inds.unsqueeze(0).nonzero().unbind(1)
else:
(_, pred_inds_with_highest_quality) = of_quality_inds.nonzero().unbind(1)
match_labels[pred_inds_with_highest_quality] = 1
class RPNOutputs(object):
def __init__(
self,
box2box_transform,
anchor_matcher,
batch_size_per_image,
positive_fraction,
images,
pred_objectness_logits,
pred_anchor_deltas,
anchors,
boundary_threshold=0,
gt_boxes=None,
smooth_l1_beta=0.0,
):
"""
Args:
box2box_transform (Box2BoxTransform): :class:`Box2BoxTransform` instance for anchor-proposal transformations.
anchor_matcher (Matcher): :class:`Matcher` instance for matching anchors to ground-truth boxes; used to determine training labels.
batch_size_per_image (int): number of proposals to sample when training
positive_fraction (float): target fraction of sampled proposals that should be positive
images (ImageList): :class:`ImageList` instance representing N input images
pred_objectness_logits (list[Tensor]): A list of L elements. Element i is a tensor of shape (N, A, Hi, W)
pred_anchor_deltas (list[Tensor]): A list of L elements. Element i is a tensor of shape (N, A*4, Hi, Wi)
anchors (list[torch.Tensor]): nested list of boxes. anchors[i][j] at (n, l) stores anchor array for feature map l
boundary_threshold (int): if >= 0, then anchors that extend beyond the image boundary by more than boundary_thresh are not used in training.
gt_boxes (list[Boxes], optional): A list of N elements.
smooth_l1_beta (float): The transition point between L1 and L2 lossn. When set to 0, the loss becomes L1. When +inf, it is ignored
"""
self.box2box_transform = box2box_transform
self.anchor_matcher = anchor_matcher
self.batch_size_per_image = batch_size_per_image
self.positive_fraction = positive_fraction
self.pred_objectness_logits = pred_objectness_logits
self.pred_anchor_deltas = pred_anchor_deltas
self.anchors = anchors
self.gt_boxes = gt_boxes
self.num_feature_maps = len(pred_objectness_logits)
self.num_images = len(images)
self.boundary_threshold = boundary_threshold
self.smooth_l1_beta = smooth_l1_beta
def _get_ground_truth(self):
raise NotImplementedError()
def predict_proposals(self):
# pred_anchor_deltas: (L, N, ? Hi, Wi)
# anchors:(N, L, -1, B)
# here we loop over specific feature map, NOT images
proposals = []
anchors = self.anchors.transpose(0, 1)
for anchors_i, pred_anchor_deltas_i in zip(anchors, self.pred_anchor_deltas):
B = anchors_i.size(-1)
N, _, Hi, Wi = pred_anchor_deltas_i.shape
anchors_i = anchors_i.flatten(start_dim=0, end_dim=1)
pred_anchor_deltas_i = pred_anchor_deltas_i.view(N, -1, B, Hi, Wi).permute(0, 3, 4, 1, 2).reshape(-1, B)
proposals_i = self.box2box_transform.apply_deltas(pred_anchor_deltas_i, anchors_i)
# Append feature map proposals with shape (N, Hi*Wi*A, B)
proposals.append(proposals_i.view(N, -1, B))
proposals = torch.stack(proposals)
return proposals
def predict_objectness_logits(self):
"""
Returns:
pred_objectness_logits (list[Tensor]) -> (N, Hi*Wi*A).
"""
pred_objectness_logits = [
# Reshape: (N, A, Hi, Wi) -> (N, Hi, Wi, A) -> (N, Hi*Wi*A)
score.permute(0, 2, 3, 1).reshape(self.num_images, -1)
for score in self.pred_objectness_logits
]
return pred_objectness_logits
# Main Classes
class Conv2d(nn.Conv2d):
def __init__(self, *args, **kwargs):
norm = kwargs.pop("norm", None)
activation = kwargs.pop("activation", None)
super().__init__(*args, **kwargs)
self.norm = norm
self.activation = activation
def forward(self, x):
if x.numel() == 0 and self.training:
assert not isinstance(self.norm, nn.SyncBatchNorm)
if x.numel() == 0:
assert not isinstance(self.norm, nn.GroupNorm)
output_shape = [
(i + 2 * p - (di * (k - 1) + 1)) // s + 1
for i, p, di, k, s in zip(
x.shape[-2:],
self.padding,
self.dilation,
self.kernel_size,
self.stride,
)
]
output_shape = [x.shape[0], self.weight.shape[0]] + output_shape
empty = _NewEmptyTensorOp.apply(x, output_shape)
if self.training:
_dummy = sum(x.view(-1)[0] for x in self.parameters()) * 0.0
return empty + _dummy
else:
return empty
x = super().forward(x)
if self.norm is not None:
x = self.norm(x)
if self.activation is not None:
x = self.activation(x)
return x
class LastLevelMaxPool(nn.Module):
"""
This module is used in the original FPN to generate a downsampled P6 feature from P5.
"""
def __init__(self):
super().__init__()
self.num_levels = 1
self.in_feature = "p5"
def forward(self, x):
return [nn.functional.max_pool2d(x, kernel_size=1, stride=2, padding=0)]
class LastLevelP6P7(nn.Module):
"""
This module is used in RetinaNet to generate extra layers, P6 and P7 from C5 feature.
"""
def __init__(self, in_channels, out_channels):
super().__init__()
self.num_levels = 2
self.in_feature = "res5"
self.p6 = nn.Conv2d(in_channels, out_channels, 3, 2, 1)
self.p7 = nn.Conv2d(out_channels, out_channels, 3, 2, 1)
def forward(self, c5):
p6 = self.p6(c5)
p7 = self.p7(nn.functional.relu(p6))
return [p6, p7]
class BasicStem(nn.Module):
def __init__(self, in_channels=3, out_channels=64, norm="BN", caffe_maxpool=False):
super().__init__()
self.conv1 = Conv2d(
in_channels,
out_channels,
kernel_size=7,
stride=2,
padding=3,
bias=False,
norm=get_norm(norm, out_channels),
)
self.caffe_maxpool = caffe_maxpool
# use pad 1 instead of pad zero
def forward(self, x):
x = self.conv1(x)
x = nn.functional.relu_(x)
if self.caffe_maxpool:
x = nn.functional.max_pool2d(x, kernel_size=3, stride=2, padding=0, ceil_mode=True)
else:
x = nn.functional.max_pool2d(x, kernel_size=3, stride=2, padding=1)
return x
@property
def out_channels(self):
return self.conv1.out_channels
@property
def stride(self):
return 4 # = stride 2 conv -> stride 2 max pool
class ResNetBlockBase(nn.Module):
def __init__(self, in_channels, out_channels, stride):
super().__init__()
self.in_channels = in_channels
self.out_channels = out_channels
self.stride = stride
def freeze(self):
for p in self.parameters():
p.requires_grad = False
return self
class BottleneckBlock(ResNetBlockBase):
def __init__(
self,
in_channels,
out_channels,
bottleneck_channels,
stride=1,
num_groups=1,
norm="BN",
stride_in_1x1=False,
dilation=1,
):
super().__init__(in_channels, out_channels, stride)
if in_channels != out_channels:
self.shortcut = Conv2d(
in_channels,
out_channels,
kernel_size=1,
stride=stride,
bias=False,
norm=get_norm(norm, out_channels),
)
else:
self.shortcut = None
# The original MSRA ResNet models have stride in the first 1x1 conv
# The subsequent fb.torch.resnet and Caffe2 ResNe[X]t implementations have
# stride in the 3x3 conv
stride_1x1, stride_3x3 = (stride, 1) if stride_in_1x1 else (1, stride)
self.conv1 = Conv2d(
in_channels,
bottleneck_channels,
kernel_size=1,
stride=stride_1x1,
bias=False,
norm=get_norm(norm, bottleneck_channels),
)
self.conv2 = Conv2d(
bottleneck_channels,
bottleneck_channels,
kernel_size=3,
stride=stride_3x3,
padding=1 * dilation,
bias=False,
groups=num_groups,
dilation=dilation,
norm=get_norm(norm, bottleneck_channels),
)
self.conv3 = Conv2d(
bottleneck_channels,
out_channels,
kernel_size=1,
bias=False,
norm=get_norm(norm, out_channels),
)
def forward(self, x):
out = self.conv1(x)
out = nn.functional.relu_(out)
out = self.conv2(out)
out = nn.functional.relu_(out)
out = self.conv3(out)
if self.shortcut is not None:
shortcut = self.shortcut(x)
else:
shortcut = x
out += shortcut
out = nn.functional.relu_(out)
return out
class Backbone(nn.Module, metaclass=ABCMeta):
def __init__(self):
super().__init__()
@abstractmethod
def forward(self):
pass
@property
def size_divisibility(self):
"""
Some backbones require the input height and width to be divisible by a specific integer. This is
typically true for encoder / decoder type networks with lateral connection (e.g., FPN) for which feature maps need to match
dimension in the "bottom up" and "top down" paths. Set to 0 if no specific input size divisibility is required.
"""
return 0
def output_shape(self):
return {
name: ShapeSpec(
channels=self._out_feature_channels[name],
stride=self._out_feature_strides[name],
)
for name in self._out_features
}
@property
def out_features(self):
"""deprecated"""
return self._out_features
@property
def out_feature_strides(self):
"""deprecated"""
return {f: self._out_feature_strides[f] for f in self._out_features}
@property
def out_feature_channels(self):
"""deprecated"""
return {f: self._out_feature_channels[f] for f in self._out_features}
class ResNet(Backbone):
def __init__(self, stem, stages, num_classes=None, out_features=None):
"""
Args:
stem (nn.Module): a stem module
stages (list[list[ResNetBlock]]): several (typically 4) stages, each contains multiple :class:`ResNetBlockBase`.
num_classes (None or int): if None, will not perform classification.
out_features (list[str]): name of the layers whose outputs should be returned in forward. Can be anything in:
"stem", "linear", or "res2" ... If None, will return the output of the last layer.
"""
super(ResNet, self).__init__()
self.stem = stem
self.num_classes = num_classes
current_stride = self.stem.stride
self._out_feature_strides = {"stem": current_stride}
self._out_feature_channels = {"stem": self.stem.out_channels}
self.stages_and_names = []
for i, blocks in enumerate(stages):
for block in blocks:
assert isinstance(block, ResNetBlockBase), block
curr_channels = block.out_channels
stage = nn.Sequential(*blocks)
name = "res" + str(i + 2)
self.add_module(name, stage)
self.stages_and_names.append((stage, name))
self._out_feature_strides[name] = current_stride = int(
current_stride * np.prod([k.stride for k in blocks])
)
self._out_feature_channels[name] = blocks[-1].out_channels
if num_classes is not None:
self.avgpool = nn.AdaptiveAvgPool2d((1, 1))
self.linear = nn.Linear(curr_channels, num_classes)
# Sec 5.1 in "Accurate, Large Minibatch SGD: Training ImageNet in 1 Hour":
# "The 1000-way fully-connected layer is initialized by
# drawing weights from a zero-mean Gaussian with std of 0.01."
nn.init.normal_(self.linear.weight, stddev=0.01)
name = "linear"
if out_features is None:
out_features = [name]
self._out_features = out_features
assert len(self._out_features)
children = [x[0] for x in self.named_children()]
for out_feature in self._out_features:
assert out_feature in children, "Available children: {}".format(", ".join(children))
def forward(self, x):
outputs = {}
x = self.stem(x)
if "stem" in self._out_features:
outputs["stem"] = x
for stage, name in self.stages_and_names:
x = stage(x)
if name in self._out_features:
outputs[name] = x
if self.num_classes is not None:
x = self.avgpool(x)
x = self.linear(x)
if "linear" in self._out_features:
outputs["linear"] = x
return outputs
def output_shape(self):
return {
name: ShapeSpec(
channels=self._out_feature_channels[name],
stride=self._out_feature_strides[name],
)
for name in self._out_features
}
@staticmethod
def make_stage(
block_class,
num_blocks,
first_stride=None,
*,
in_channels,
out_channels,
**kwargs,
):
"""
Usually, layers that produce the same feature map spatial size
are defined as one "stage".
Under such definition, stride_per_block[1:] should all be 1.
"""
if first_stride is not None:
assert "stride" not in kwargs and "stride_per_block" not in kwargs
kwargs["stride_per_block"] = [first_stride] + [1] * (num_blocks - 1)
blocks = []
for i in range(num_blocks):
curr_kwargs = {}
for k, v in kwargs.items():
if k.endswith("_per_block"):
assert (
len(v) == num_blocks
), f"Argument '{k}' of make_stage should have the same length as num_blocks={num_blocks}."
newk = k[: -len("_per_block")]
assert newk not in kwargs, f"Cannot call make_stage with both {k} and {newk}!"
curr_kwargs[newk] = v[i]
else:
curr_kwargs[k] = v
blocks.append(block_class(in_channels=in_channels, out_channels=out_channels, **curr_kwargs))
in_channels = out_channels
return blocks
class ROIPooler(nn.Module):
"""
Region of interest feature map pooler that supports pooling from one or more
feature maps.
"""
def __init__(
self,
output_size,
scales,
sampling_ratio,
canonical_box_size=224,
canonical_level=4,
):
super().__init__()
# assumption that stride is a power of 2.
min_level = -math.log2(scales[0])
max_level = -math.log2(scales[-1])
# a bunch of testing
assert math.isclose(min_level, int(min_level)) and math.isclose(max_level, int(max_level))
assert len(scales) == max_level - min_level + 1, "not pyramid"
assert 0 < min_level and min_level <= max_level
if isinstance(output_size, int):
output_size = (output_size, output_size)
assert len(output_size) == 2 and isinstance(output_size[0], int) and isinstance(output_size[1], int)
if len(scales) > 1:
assert min_level <= canonical_level and canonical_level <= max_level
assert canonical_box_size > 0
self.output_size = output_size
self.min_level = int(min_level)
self.max_level = int(max_level)
self.level_poolers = nn.ModuleList(RoIPool(output_size, spatial_scale=scale) for scale in scales)
self.canonical_level = canonical_level
self.canonical_box_size = canonical_box_size
def forward(self, feature_maps, boxes):
"""
Args:
feature_maps: List[torch.Tensor(N,C,W,H)]
box_lists: list[torch.Tensor])
Returns:
A tensor of shape(N*B, Channels, output_size, output_size)
"""
x = list(feature_maps.values())
num_level_assignments = len(self.level_poolers)
assert len(x) == num_level_assignments and len(boxes) == x[0].size(0)
pooler_fmt_boxes = convert_boxes_to_pooler_format(boxes)
if num_level_assignments == 1:
return self.level_poolers[0](x[0], pooler_fmt_boxes)
level_assignments = assign_boxes_to_levels(
boxes,
self.min_level,
self.max_level,
self.canonical_box_size,
self.canonical_level,
)
num_boxes = len(pooler_fmt_boxes)
num_channels = x[0].shape[1]
output_size = self.output_size[0]
dtype, device = x[0].dtype, x[0].device
output = torch.zeros(
(num_boxes, num_channels, output_size, output_size),
dtype=dtype,
device=device,
)
for level, (x_level, pooler) in enumerate(zip(x, self.level_poolers)):
inds = torch.nonzero(level_assignments == level).squeeze(1)
pooler_fmt_boxes_level = pooler_fmt_boxes[inds]
output[inds] = pooler(x_level, pooler_fmt_boxes_level)
return output
class ROIOutputs(object):
def __init__(self, cfg, training=False):
self.smooth_l1_beta = cfg.ROI_BOX_HEAD.SMOOTH_L1_BETA
self.box2box_transform = Box2BoxTransform(weights=cfg.ROI_BOX_HEAD.BBOX_REG_WEIGHTS)
self.training = training
self.score_thresh = cfg.ROI_HEADS.SCORE_THRESH_TEST
self.min_detections = cfg.MIN_DETECTIONS
self.max_detections = cfg.MAX_DETECTIONS
nms_thresh = cfg.ROI_HEADS.NMS_THRESH_TEST
if not isinstance(nms_thresh, list):
nms_thresh = [nms_thresh]
self.nms_thresh = nms_thresh
def _predict_boxes(self, proposals, box_deltas, preds_per_image):
num_pred = box_deltas.size(0)
B = proposals[0].size(-1)
K = box_deltas.size(-1) // B
box_deltas = box_deltas.view(num_pred * K, B)
proposals = torch.cat(proposals, dim=0).unsqueeze(-2).expand(num_pred, K, B)
proposals = proposals.reshape(-1, B)
boxes = self.box2box_transform.apply_deltas(box_deltas, proposals)
return boxes.view(num_pred, K * B).split(preds_per_image, dim=0)
def _predict_objs(self, obj_logits, preds_per_image):
probs = nn.functional.softmax(obj_logits, dim=-1)
probs = probs.split(preds_per_image, dim=0)
return probs
def _predict_attrs(self, attr_logits, preds_per_image):
attr_logits = attr_logits[..., :-1].softmax(-1)
attr_probs, attrs = attr_logits.max(-1)
return attr_probs.split(preds_per_image, dim=0), attrs.split(preds_per_image, dim=0)
@torch.no_grad()
def inference(
self,
obj_logits,
attr_logits,
box_deltas,
pred_boxes,
features,
sizes,
scales=None,
):
# only the pred boxes is the
preds_per_image = [p.size(0) for p in pred_boxes]
boxes_all = self._predict_boxes(pred_boxes, box_deltas, preds_per_image)
obj_scores_all = self._predict_objs(obj_logits, preds_per_image) # list of length N
attr_probs_all, attrs_all = self._predict_attrs(attr_logits, preds_per_image)
features = features.split(preds_per_image, dim=0)
# fun for each image too, also I can experiment and do multiple images
final_results = []
zipped = zip(boxes_all, obj_scores_all, attr_probs_all, attrs_all, sizes)
for i, (boxes, obj_scores, attr_probs, attrs, size) in enumerate(zipped):
for nms_t in self.nms_thresh:
outputs = do_nms(
boxes,
obj_scores,
size,
self.score_thresh,
nms_t,
self.min_detections,
self.max_detections,
)
if outputs is not None:
max_boxes, max_scores, classes, ids = outputs
break
if scales is not None:
scale_yx = scales[i]
max_boxes[:, 0::2] *= scale_yx[1]
max_boxes[:, 1::2] *= scale_yx[0]
final_results.append(
(
max_boxes,
classes,
max_scores,
attrs[ids],
attr_probs[ids],
features[i][ids],
)
)
boxes, classes, class_probs, attrs, attr_probs, roi_features = map(list, zip(*final_results))
return boxes, classes, class_probs, attrs, attr_probs, roi_features
def training(self, obj_logits, attr_logits, box_deltas, pred_boxes, features, sizes):
pass
def __call__(
self,
obj_logits,
attr_logits,
box_deltas,
pred_boxes,
features,
sizes,
scales=None,
):
if self.training:
raise NotImplementedError()
return self.inference(
obj_logits,
attr_logits,
box_deltas,
pred_boxes,
features,
sizes,
scales=scales,
)
class Res5ROIHeads(nn.Module):
"""
ROIHeads perform all per-region computation in an R-CNN.
It contains logic of cropping the regions, extract per-region features
(by the res-5 block in this case), and make per-region predictions.
"""
def __init__(self, cfg, input_shape):
super().__init__()
self.batch_size_per_image = cfg.RPN.BATCH_SIZE_PER_IMAGE
self.positive_sample_fraction = cfg.ROI_HEADS.POSITIVE_FRACTION
self.in_features = cfg.ROI_HEADS.IN_FEATURES
self.num_classes = cfg.ROI_HEADS.NUM_CLASSES
self.proposal_append_gt = cfg.ROI_HEADS.PROPOSAL_APPEND_GT
self.feature_strides = {k: v.stride for k, v in input_shape.items()}
self.feature_channels = {k: v.channels for k, v in input_shape.items()}
self.cls_agnostic_bbox_reg = cfg.ROI_BOX_HEAD.CLS_AGNOSTIC_BBOX_REG
self.stage_channel_factor = 2**3 # res5 is 8x res2
self.out_channels = cfg.RESNETS.RES2_OUT_CHANNELS * self.stage_channel_factor
# self.proposal_matcher = Matcher(
# cfg.ROI_HEADS.IOU_THRESHOLDS,
# cfg.ROI_HEADS.IOU_LABELS,
# allow_low_quality_matches=False,
# )
pooler_resolution = cfg.ROI_BOX_HEAD.POOLER_RESOLUTION
pooler_scales = (1.0 / self.feature_strides[self.in_features[0]],)
sampling_ratio = cfg.ROI_BOX_HEAD.POOLER_SAMPLING_RATIO
res5_halve = cfg.ROI_BOX_HEAD.RES5HALVE
use_attr = cfg.ROI_BOX_HEAD.ATTR
num_attrs = cfg.ROI_BOX_HEAD.NUM_ATTRS
self.pooler = ROIPooler(
output_size=pooler_resolution,
scales=pooler_scales,
sampling_ratio=sampling_ratio,
)
self.res5 = self._build_res5_block(cfg)
if not res5_halve:
"""
Modifications for VG in RoI heads:
1. Change the stride of conv1 and shortcut in Res5.Block1 from 2 to 1
2. Modifying all conv2 with (padding: 1 --> 2) and (dilation: 1 --> 2)
"""
self.res5[0].conv1.stride = (1, 1)
self.res5[0].shortcut.stride = (1, 1)
for i in range(3):
self.res5[i].conv2.padding = (2, 2)
self.res5[i].conv2.dilation = (2, 2)
self.box_predictor = FastRCNNOutputLayers(
self.out_channels,
self.num_classes,
self.cls_agnostic_bbox_reg,
use_attr=use_attr,
num_attrs=num_attrs,
)
def _build_res5_block(self, cfg):
stage_channel_factor = self.stage_channel_factor # res5 is 8x res2
num_groups = cfg.RESNETS.NUM_GROUPS
width_per_group = cfg.RESNETS.WIDTH_PER_GROUP
bottleneck_channels = num_groups * width_per_group * stage_channel_factor
out_channels = self.out_channels
stride_in_1x1 = cfg.RESNETS.STRIDE_IN_1X1
norm = cfg.RESNETS.NORM
blocks = ResNet.make_stage(
BottleneckBlock,
3,
first_stride=2,
in_channels=out_channels // 2,
bottleneck_channels=bottleneck_channels,
out_channels=out_channels,
num_groups=num_groups,
norm=norm,
stride_in_1x1=stride_in_1x1,
)
return nn.Sequential(*blocks)
def _shared_roi_transform(self, features, boxes):
x = self.pooler(features, boxes)
return self.res5(x)
def forward(self, features, proposal_boxes, gt_boxes=None):
if self.training:
"""
see https://github.com/airsplay/py-bottom-up-attention/\
blob/master/detectron2/modeling/roi_heads/roi_heads.py
"""
raise NotImplementedError()
assert not proposal_boxes[0].requires_grad
box_features = self._shared_roi_transform(features, proposal_boxes)
feature_pooled = box_features.mean(dim=[2, 3]) # pooled to 1x1
obj_logits, attr_logits, pred_proposal_deltas = self.box_predictor(feature_pooled)
return obj_logits, attr_logits, pred_proposal_deltas, feature_pooled
class AnchorGenerator(nn.Module):
"""
For a set of image sizes and feature maps, computes a set of anchors.
"""
def __init__(self, cfg, input_shape: List[ShapeSpec]):
super().__init__()
sizes = cfg.ANCHOR_GENERATOR.SIZES
aspect_ratios = cfg.ANCHOR_GENERATOR.ASPECT_RATIOS
self.strides = [x.stride for x in input_shape]
self.offset = cfg.ANCHOR_GENERATOR.OFFSET
assert 0.0 <= self.offset < 1.0, self.offset
"""
sizes (list[list[int]]): sizes[i] is the list of anchor sizes for feat map i
1. given in absolute lengths in units of the input image;
2. they do not dynamically scale if the input image size changes.
aspect_ratios (list[list[float]])
strides (list[int]): stride of each input feature.
"""
self.num_features = len(self.strides)
self.cell_anchors = nn.ParameterList(self._calculate_anchors(sizes, aspect_ratios))
self._spacial_feat_dim = 4
def _calculate_anchors(self, sizes, aspect_ratios):
# If one size (or aspect ratio) is specified and there are multiple feature
# maps, then we "broadcast" anchors of that single size (or aspect ratio)
if len(sizes) == 1:
sizes *= self.num_features
if len(aspect_ratios) == 1:
aspect_ratios *= self.num_features
assert self.num_features == len(sizes)
assert self.num_features == len(aspect_ratios)
cell_anchors = [self.generate_cell_anchors(s, a).float() for s, a in zip(sizes, aspect_ratios)]
return cell_anchors
@property
def box_dim(self):
return self._spacial_feat_dim
@property
def num_cell_anchors(self):
"""
Returns:
list[int]: Each int is the number of anchors at every pixel location, on that feature map.
"""
return [len(cell_anchors) for cell_anchors in self.cell_anchors]
def grid_anchors(self, grid_sizes):
anchors = []
for size, stride, base_anchors in zip(grid_sizes, self.strides, self.cell_anchors):
shift_x, shift_y = _create_grid_offsets(size, stride, self.offset, base_anchors.device)
shifts = torch.stack((shift_x, shift_y, shift_x, shift_y), dim=1)
anchors.append((shifts.view(-1, 1, 4) + base_anchors.view(1, -1, 4)).reshape(-1, 4))
return anchors
def generate_cell_anchors(self, sizes=(32, 64, 128, 256, 512), aspect_ratios=(0.5, 1, 2)):
"""
anchors are continuous geometric rectangles
centered on one feature map point sample.
We can later build the set of anchors
for the entire feature map by tiling these tensors
"""
anchors = []
for size in sizes:
area = size**2.0
for aspect_ratio in aspect_ratios:
w = math.sqrt(area / aspect_ratio)
h = aspect_ratio * w
x0, y0, x1, y1 = -w / 2.0, -h / 2.0, w / 2.0, h / 2.0
anchors.append([x0, y0, x1, y1])
return nn.Parameter(torch.tensor(anchors))
def forward(self, features):
"""
Args:
features List[torch.Tensor]: list of feature maps on which to generate anchors.
Returns:
torch.Tensor: a list of #image elements.
"""
num_images = features[0].size(0)
grid_sizes = [feature_map.shape[-2:] for feature_map in features]
anchors_over_all_feature_maps = self.grid_anchors(grid_sizes)
anchors_over_all_feature_maps = torch.stack(anchors_over_all_feature_maps)
return anchors_over_all_feature_maps.unsqueeze(0).repeat_interleave(num_images, dim=0)
class RPNHead(nn.Module):
"""
RPN classification and regression heads. Uses a 3x3 conv to produce a shared
hidden state from which one 1x1 conv predicts objectness logits for each anchor
and a second 1x1 conv predicts bounding-box deltas specifying how to deform
each anchor into an object proposal.
"""
def __init__(self, cfg, input_shape: List[ShapeSpec]):
super().__init__()
# Standard RPN is shared across levels:
in_channels = [s.channels for s in input_shape]
assert len(set(in_channels)) == 1, "Each level must have the same channel!"
in_channels = in_channels[0]
anchor_generator = AnchorGenerator(cfg, input_shape)
num_cell_anchors = anchor_generator.num_cell_anchors
box_dim = anchor_generator.box_dim
assert len(set(num_cell_anchors)) == 1, "Each level must have the same number of cell anchors"
num_cell_anchors = num_cell_anchors[0]
if cfg.PROPOSAL_GENERATOR.HIDDEN_CHANNELS == -1:
hid_channels = in_channels
else:
hid_channels = cfg.PROPOSAL_GENERATOR.HIDDEN_CHANNELS
# Modifications for VG in RPN (modeling/proposal_generator/rpn.py)
# Use hidden dim instead fo the same dim as Res4 (in_channels)
# 3x3 conv for the hidden representation
self.conv = nn.Conv2d(in_channels, hid_channels, kernel_size=3, stride=1, padding=1)
# 1x1 conv for predicting objectness logits
self.objectness_logits = nn.Conv2d(hid_channels, num_cell_anchors, kernel_size=1, stride=1)
# 1x1 conv for predicting box2box transform deltas
self.anchor_deltas = nn.Conv2d(hid_channels, num_cell_anchors * box_dim, kernel_size=1, stride=1)
for layer in [self.conv, self.objectness_logits, self.anchor_deltas]:
nn.init.normal_(layer.weight, std=0.01)
nn.init.constant_(layer.bias, 0)
def forward(self, features):
"""
Args:
features (list[Tensor]): list of feature maps
"""
pred_objectness_logits = []
pred_anchor_deltas = []
for x in features:
t = nn.functional.relu(self.conv(x))
pred_objectness_logits.append(self.objectness_logits(t))
pred_anchor_deltas.append(self.anchor_deltas(t))
return pred_objectness_logits, pred_anchor_deltas
class RPN(nn.Module):
"""
Region Proposal Network, introduced by the Faster R-CNN paper.
"""
def __init__(self, cfg, input_shape: Dict[str, ShapeSpec]):
super().__init__()
self.min_box_side_len = cfg.PROPOSAL_GENERATOR.MIN_SIZE
self.in_features = cfg.RPN.IN_FEATURES
self.nms_thresh = cfg.RPN.NMS_THRESH
self.batch_size_per_image = cfg.RPN.BATCH_SIZE_PER_IMAGE
self.positive_fraction = cfg.RPN.POSITIVE_FRACTION
self.smooth_l1_beta = cfg.RPN.SMOOTH_L1_BETA
self.loss_weight = cfg.RPN.LOSS_WEIGHT
self.pre_nms_topk = {
True: cfg.RPN.PRE_NMS_TOPK_TRAIN,
False: cfg.RPN.PRE_NMS_TOPK_TEST,
}
self.post_nms_topk = {
True: cfg.RPN.POST_NMS_TOPK_TRAIN,
False: cfg.RPN.POST_NMS_TOPK_TEST,
}
self.boundary_threshold = cfg.RPN.BOUNDARY_THRESH
self.anchor_generator = AnchorGenerator(cfg, [input_shape[f] for f in self.in_features])
self.box2box_transform = Box2BoxTransform(weights=cfg.RPN.BBOX_REG_WEIGHTS)
self.anchor_matcher = Matcher(
cfg.RPN.IOU_THRESHOLDS,
cfg.RPN.IOU_LABELS,
allow_low_quality_matches=True,
)
self.rpn_head = RPNHead(cfg, [input_shape[f] for f in self.in_features])
def training(self, images, image_shapes, features, gt_boxes):
pass
def inference(self, outputs, images, image_shapes, features, gt_boxes=None):
outputs = find_top_rpn_proposals(
outputs.predict_proposals(),
outputs.predict_objectness_logits(),
images,
image_shapes,
self.nms_thresh,
self.pre_nms_topk[self.training],
self.post_nms_topk[self.training],
self.min_box_side_len,
self.training,
)
results = []
for img in outputs:
im_boxes, img_box_logits = img
img_box_logits, inds = img_box_logits.sort(descending=True)
im_boxes = im_boxes[inds]
results.append((im_boxes, img_box_logits))
(proposal_boxes, logits) = tuple(map(list, zip(*results)))
return proposal_boxes, logits
def forward(self, images, image_shapes, features, gt_boxes=None):
"""
Args:
images (torch.Tensor): input images of length `N`
features (dict[str: Tensor])
gt_instances
"""
# features is dict, key = block level, v = feature_map
features = [features[f] for f in self.in_features]
pred_objectness_logits, pred_anchor_deltas = self.rpn_head(features)
anchors = self.anchor_generator(features)
outputs = RPNOutputs(
self.box2box_transform,
self.anchor_matcher,
self.batch_size_per_image,
self.positive_fraction,
images,
pred_objectness_logits,
pred_anchor_deltas,
anchors,
self.boundary_threshold,
gt_boxes,
self.smooth_l1_beta,
)
# For RPN-only models, the proposals are the final output
if self.training:
raise NotImplementedError()
return self.training(outputs, images, image_shapes, features, gt_boxes)
else:
return self.inference(outputs, images, image_shapes, features, gt_boxes)
class FastRCNNOutputLayers(nn.Module):
"""
Two linear layers for predicting Fast R-CNN outputs:
(1) proposal-to-detection box regression deltas
(2) classification scores
"""
def __init__(
self,
input_size,
num_classes,
cls_agnostic_bbox_reg,
box_dim=4,
use_attr=False,
num_attrs=-1,
):
"""
Args:
input_size (int): channels, or (channels, height, width)
num_classes (int)
cls_agnostic_bbox_reg (bool)
box_dim (int)
"""
super().__init__()
if not isinstance(input_size, int):
input_size = np.prod(input_size)
# (do + 1 for background class)
self.cls_score = nn.Linear(input_size, num_classes + 1)
num_bbox_reg_classes = 1 if cls_agnostic_bbox_reg else num_classes
self.bbox_pred = nn.Linear(input_size, num_bbox_reg_classes * box_dim)
self.use_attr = use_attr
if use_attr:
"""
Modifications for VG in RoI heads
Embedding: {num_classes + 1} --> {input_size // 8}
Linear: {input_size + input_size // 8} --> {input_size // 4}
Linear: {input_size // 4} --> {num_attrs + 1}
"""
self.cls_embedding = nn.Embedding(num_classes + 1, input_size // 8)
self.fc_attr = nn.Linear(input_size + input_size // 8, input_size // 4)
self.attr_score = nn.Linear(input_size // 4, num_attrs + 1)
nn.init.normal_(self.cls_score.weight, std=0.01)
nn.init.normal_(self.bbox_pred.weight, std=0.001)
for item in [self.cls_score, self.bbox_pred]:
nn.init.constant_(item.bias, 0)
def forward(self, roi_features):
if roi_features.dim() > 2:
roi_features = torch.flatten(roi_features, start_dim=1)
scores = self.cls_score(roi_features)
proposal_deltas = self.bbox_pred(roi_features)
if self.use_attr:
_, max_class = scores.max(-1) # [b, c] --> [b]
cls_emb = self.cls_embedding(max_class) # [b] --> [b, 256]
roi_features = torch.cat([roi_features, cls_emb], -1) # [b, 2048] + [b, 256] --> [b, 2304]
roi_features = self.fc_attr(roi_features)
roi_features = nn.functional.relu(roi_features)
attr_scores = self.attr_score(roi_features)
return scores, attr_scores, proposal_deltas
else:
return scores, proposal_deltas
class GeneralizedRCNN(nn.Module):
def __init__(self, cfg):
super().__init__()
self.device = torch.device(cfg.MODEL.DEVICE)
self.backbone = build_backbone(cfg)
self.proposal_generator = RPN(cfg, self.backbone.output_shape())
self.roi_heads = Res5ROIHeads(cfg, self.backbone.output_shape())
self.roi_outputs = ROIOutputs(cfg)
self.to(self.device)
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path, *model_args, **kwargs):
config = kwargs.pop("config", None)
state_dict = kwargs.pop("state_dict", None)
cache_dir = kwargs.pop("cache_dir", None)
from_tf = kwargs.pop("from_tf", False)
force_download = kwargs.pop("force_download", False)
resume_download = kwargs.pop("resume_download", False)
proxies = kwargs.pop("proxies", None)
local_files_only = kwargs.pop("local_files_only", False)
use_cdn = kwargs.pop("use_cdn", True)
# Load config if we don't provide a configuration
if not isinstance(config, Config):
config_path = config if config is not None else pretrained_model_name_or_path
# try:
config = Config.from_pretrained(
config_path,
cache_dir=cache_dir,
force_download=force_download,
resume_download=resume_download,
proxies=proxies,
local_files_only=local_files_only,
)
# Load model
if pretrained_model_name_or_path is not None:
if os.path.isdir(pretrained_model_name_or_path):
if os.path.isfile(os.path.join(pretrained_model_name_or_path, WEIGHTS_NAME)):
# Load from a PyTorch checkpoint
archive_file = os.path.join(pretrained_model_name_or_path, WEIGHTS_NAME)
else:
raise EnvironmentError(
"Error no file named {} found in directory {} ".format(
WEIGHTS_NAME,
pretrained_model_name_or_path,
)
)
elif os.path.isfile(pretrained_model_name_or_path) or is_remote_url(pretrained_model_name_or_path):
archive_file = pretrained_model_name_or_path
elif os.path.isfile(pretrained_model_name_or_path + ".index"):
assert from_tf, "We found a TensorFlow checkpoint at {}, please set from_tf to True to load from this checkpoint".format(
pretrained_model_name_or_path + ".index"
)
archive_file = pretrained_model_name_or_path + ".index"
else:
archive_file = hf_bucket_url(
pretrained_model_name_or_path,
filename=WEIGHTS_NAME,
use_cdn=use_cdn,
)
try:
# Load from URL or cache if already cached
resolved_archive_file = cached_path(
archive_file,
cache_dir=cache_dir,
force_download=force_download,
proxies=proxies,
resume_download=resume_download,
local_files_only=local_files_only,
)
if resolved_archive_file is None:
raise EnvironmentError
except EnvironmentError:
msg = f"Can't load weights for '{pretrained_model_name_or_path}'."
raise EnvironmentError(msg)
if resolved_archive_file == archive_file:
print("loading weights file {}".format(archive_file))
else:
print("loading weights file {} from cache at {}".format(archive_file, resolved_archive_file))
else:
resolved_archive_file = None
# Instantiate model.
model = cls(config)
if state_dict is None:
try:
try:
state_dict = torch.load(resolved_archive_file, map_location="cpu")
except Exception:
state_dict = load_checkpoint(resolved_archive_file)
except Exception:
raise OSError(
"Unable to load weights from pytorch checkpoint file. "
"If you tried to load a PyTorch model from a TF 2.0 checkpoint, please set from_tf=True. "
)
missing_keys = []
unexpected_keys = []
error_msgs = []
# Convert old format to new format if needed from a PyTorch state_dict
old_keys = []
new_keys = []
for key in state_dict.keys():
new_key = None
if "gamma" in key:
new_key = key.replace("gamma", "weight")
if "beta" in key:
new_key = key.replace("beta", "bias")
if new_key:
old_keys.append(key)
new_keys.append(new_key)
for old_key, new_key in zip(old_keys, new_keys):
state_dict[new_key] = state_dict.pop(old_key)
# copy state_dict so _load_from_state_dict can modify it
metadata = getattr(state_dict, "_metadata", None)
state_dict = state_dict.copy()
if metadata is not None:
state_dict._metadata = metadata
model_to_load = model
model_to_load.load_state_dict(state_dict)
if model.__class__.__name__ != model_to_load.__class__.__name__:
base_model_state_dict = model_to_load.state_dict().keys()
head_model_state_dict_without_base_prefix = [
key.split(cls.base_model_prefix + ".")[-1] for key in model.state_dict().keys()
]
missing_keys.extend(head_model_state_dict_without_base_prefix - base_model_state_dict)
if len(unexpected_keys) > 0:
print(
f"Some weights of the model checkpoint at {pretrained_model_name_or_path} were not used when"
f" initializing {model.__class__.__name__}: {unexpected_keys}\n- This IS expected if you are"
f" initializing {model.__class__.__name__} from the checkpoint of a model trained on another task or"
" with another architecture (e.g. initializing a BertForSequenceClassification model from a"
" BertForPreTraining model).\n- This IS NOT expected if you are initializing"
f" {model.__class__.__name__} from the checkpoint of a model that you expect to be exactly identical"
" (initializing a BertForSequenceClassification model from a BertForSequenceClassification model)."
)
else:
print(f"All model checkpoint weights were used when initializing {model.__class__.__name__}.\n")
if len(missing_keys) > 0:
print(
f"Some weights of {model.__class__.__name__} were not initialized from the model checkpoint at"
f" {pretrained_model_name_or_path} and are newly initialized: {missing_keys}\nYou should probably"
" TRAIN this model on a down-stream task to be able to use it for predictions and inference."
)
else:
print(
f"All the weights of {model.__class__.__name__} were initialized from the model checkpoint at"
f" {pretrained_model_name_or_path}.\nIf your task is similar to the task the model of the checkpoint"
f" was trained on, you can already use {model.__class__.__name__} for predictions without further"
" training."
)
if len(error_msgs) > 0:
raise RuntimeError(
"Error(s) in loading state_dict for {}:\n\t{}".format(
model.__class__.__name__, "\n\t".join(error_msgs)
)
)
# Set model in evaluation mode to deactivate DropOut modules by default
model.eval()
return model
def forward(
self,
images,
image_shapes,
gt_boxes=None,
proposals=None,
scales_yx=None,
**kwargs,
):
"""
kwargs:
max_detections (int), return_tensors {"np", "pt", None}, padding {None,
"max_detections"}, pad_value (int), location = {"cuda", "cpu"}
"""
if self.training:
raise NotImplementedError()
return self.inference(
images=images,
image_shapes=image_shapes,
gt_boxes=gt_boxes,
proposals=proposals,
scales_yx=scales_yx,
**kwargs,
)
@torch.no_grad()
def inference(
self,
images,
image_shapes,
gt_boxes=None,
proposals=None,
scales_yx=None,
**kwargs,
):
# run images through backbone
original_sizes = image_shapes * scales_yx
features = self.backbone(images)
# generate proposals if none are available
if proposals is None:
proposal_boxes, _ = self.proposal_generator(images, image_shapes, features, gt_boxes)
else:
assert proposals is not None
# pool object features from either gt_boxes, or from proposals
obj_logits, attr_logits, box_deltas, feature_pooled = self.roi_heads(features, proposal_boxes, gt_boxes)
# prepare FRCNN Outputs and select top proposals
boxes, classes, class_probs, attrs, attr_probs, roi_features = self.roi_outputs(
obj_logits=obj_logits,
attr_logits=attr_logits,
box_deltas=box_deltas,
pred_boxes=proposal_boxes,
features=feature_pooled,
sizes=image_shapes,
scales=scales_yx,
)
# will we pad???
subset_kwargs = {
"max_detections": kwargs.get("max_detections", None),
"return_tensors": kwargs.get("return_tensors", None),
"pad_value": kwargs.get("pad_value", 0),
"padding": kwargs.get("padding", None),
}
preds_per_image = torch.tensor([p.size(0) for p in boxes])
boxes = pad_list_tensors(boxes, preds_per_image, **subset_kwargs)
classes = pad_list_tensors(classes, preds_per_image, **subset_kwargs)
class_probs = pad_list_tensors(class_probs, preds_per_image, **subset_kwargs)
attrs = pad_list_tensors(attrs, preds_per_image, **subset_kwargs)
attr_probs = pad_list_tensors(attr_probs, preds_per_image, **subset_kwargs)
roi_features = pad_list_tensors(roi_features, preds_per_image, **subset_kwargs)
subset_kwargs["padding"] = None
preds_per_image = pad_list_tensors(preds_per_image, None, **subset_kwargs)
sizes = pad_list_tensors(image_shapes, None, **subset_kwargs)
normalized_boxes = norm_box(boxes, original_sizes)
return OrderedDict(
{
"obj_ids": classes,
"obj_probs": class_probs,
"attr_ids": attrs,
"attr_probs": attr_probs,
"boxes": boxes,
"sizes": sizes,
"preds_per_image": preds_per_image,
"roi_features": roi_features,
"normalized_boxes": normalized_boxes,
}
)
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/visual_bert/demo.ipynb
|
# %pip install-r requirements.txtfrom IPython.display import Image, display
import PIL.Image
import io
import torch
import numpy as np
from processing_image import Preprocess
from visualizing_image import SingleImageViz
from modeling_frcnn import GeneralizedRCNN
from utils import Config
import utils
from transformers import VisualBertForQuestionAnswering, BertTokenizerFast
# URL = "https://raw.githubusercontent.com/airsplay/py-bottom-up-attention/master/demo/data/images/input.jpg"
URL = "https://vqa.cloudcv.org/media/test2014/COCO_test2014_000000262567.jpg"
OBJ_URL = "https://raw.githubusercontent.com/airsplay/py-bottom-up-attention/master/demo/data/genome/1600-400-20/objects_vocab.txt"
ATTR_URL = "https://raw.githubusercontent.com/airsplay/py-bottom-up-attention/master/demo/data/genome/1600-400-20/attributes_vocab.txt"
VQA_URL = "https://dl.fbaipublicfiles.com/pythia/data/answers_vqa.txt"
# for visualizing output
def showarray(a, fmt="jpeg"):
a = np.uint8(np.clip(a, 0, 255))
f = io.BytesIO()
PIL.Image.fromarray(a).save(f, fmt)
display(Image(data=f.getvalue()))# load object, attribute, and answer labels
objids = utils.get_data(OBJ_URL)
attrids = utils.get_data(ATTR_URL)
vqa_answers = utils.get_data(VQA_URL)# load models and model components
frcnn_cfg = Config.from_pretrained("unc-nlp/frcnn-vg-finetuned")
frcnn = GeneralizedRCNN.from_pretrained("unc-nlp/frcnn-vg-finetuned", config=frcnn_cfg)
image_preprocess = Preprocess(frcnn_cfg)
bert_tokenizer = BertTokenizerFast.from_pretrained("bert-base-uncased")
visualbert_vqa = VisualBertForQuestionAnswering.from_pretrained("uclanlp/visualbert-vqa")# image viz
frcnn_visualizer = SingleImageViz(URL, id2obj=objids, id2attr=attrids)
# run frcnn
images, sizes, scales_yx = image_preprocess(URL)
output_dict = frcnn(
images,
sizes,
scales_yx=scales_yx,
padding="max_detections",
max_detections=frcnn_cfg.max_detections,
return_tensors="pt",
)
# add boxes and labels to the image
frcnn_visualizer.draw_boxes(
output_dict.get("boxes"),
output_dict.pop("obj_ids"),
output_dict.pop("obj_probs"),
output_dict.pop("attr_ids"),
output_dict.pop("attr_probs"),
)
showarray(frcnn_visualizer._get_buffer())# test_questions_for_url1 = [
# "Where is this scene?",
# "what is the man riding?",
# "What is the man wearing?",
# "What is the color of the horse?"
# ]
test_questions_for_url2 = [
"Where is the cat?",
"What is near the disk?",
"What is the color of the table?",
"What is the color of the cat?",
"What is the shape of the monitor?",
]
# Very important that the boxes are normalized
# normalized_boxes = output_dict.get("normalized_boxes")
features = output_dict.get("roi_features")for test_question in test_questions_for_url2:
test_question = [test_question]
inputs = bert_tokenizer(
test_question,
padding="max_length",
max_length=20,
truncation=True,
return_token_type_ids=True,
return_attention_mask=True,
add_special_tokens=True,
return_tensors="pt",
)
output_vqa = visualbert_vqa(
input_ids=inputs.input_ids,
attention_mask=inputs.attention_mask,
visual_embeds=features,
visual_attention_mask=torch.ones(features.shape[:-1]),
token_type_ids=inputs.token_type_ids,
output_attentions=False,
)
# get prediction
pred_vqa = output_vqa["logits"].argmax(-1)
print("Question:", test_question)
print("prediction from VisualBert VQA:", vqa_answers[pred_vqa])
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/robust-speech-event/README.md
|
# Robust Speech Challenge 🤗
Welcome to the robust speech recognition challenge 🎙️ !
The goal of this event is to build **robust**, **real-world** speech recognition (ASR) systems in as many languages as possible 🌏🌍🌎.
If necessary and available, free access to a V100S 32 GB GPU will kindly be provided by the [OVHcloud team]( https://www.ovhcloud.com/) 🚀.
This document summarizes all the relevant information required for the speech community event 📋.
To sign-up, please see [this forum post](https://discuss.huggingface.co/t/open-to-the-community-robust-speech-recognition-challenge/13614) 🤗. Please make sure to:
- Read it in detail
- Fill the google form
- Join our Discord server in the #join-sprint channel.
## Table of Contents
- [TLDR;](#tldr)
- [Important dates](#important-dates)
- [How to install pytorch, transformers, datasets](#how-to-install-relevant-libraries)
- [Data and Preprocessing](#data-and-preprocessing)
- [How to fine-tune an acoustic model](#how-to-finetune-an-acoustic-model)
- [How to fine-tune with OVH could](#how-to-finetune-with-ovh-cloud)
- [How to combine n-gram language models with acoustic model](#how-to-combine-n-gram-with-acoustic-model)
- [Evaluation](#evaluation)
- [Prizes](#prizes)
- [Communication and Problems](#communication-and-problems)
- [Talks](#talks)
- [General Tips & Tricks](#general-tips-and-tricks)
## TLDR
Participants are encouraged to leverage pre-trained speech recognition checkpoints,
preferably [facebook/wav2vec2-large-xlsr-53](https://huggingface.co/facebook/wav2vec2-large-xlsr-53),
to train a speech recognition system in a language of their choice.
Speech recognition systems should be trained using **PyTorch**, **🤗 Transformers**, and, **🤗 Datasets**.
For more information on how to install the above libraries, please read through
[How to install pytorch, transformers, datasets](#how-to-install-relevant-libraries).
Participants can make use of whatever data they think is useful to build a
speech recognition system for **real-world** audio data -
**except** the Common Voice `"test"` split of their chosen language.
The section [Data and preprocessing](#data-and-preprocessing) explains
in more detail what audio data can be used, how to find suitable audio data, and
how the audio data can be processed.
For training, it is recommended to use the [official training script](https://github.com/huggingface/transformers/blob/main/examples/pytorch/speech-recognition/run_speech_recognition_ctc.py) or a modification thereof. A step-by-step guide on how to fine-tune
an acoustic model for a speech recognition system can be found under [How to fine-tune an acoustic model](#how-to-finetune-an-acoustic-model).
If possible it is encouraged to fine-tune the acoustic models on local GPU machines, but
if those are not available, the OVH could team kindly provides a limited
number of GPUs for the event. Simply fill out [this google form](https://forms.gle/GFZkMkKLiufi75g28) to get access to a GPU.
For more information on how to train an acoustic model on one of OVH's GPU - see [How to fine-tune a speech recognition model with OVHcould](#how-to-fine-tune-with-ovh-cloud).
The performance of speech recognition system can often significantly be improved by adding a
language model for decoding. For more information on how to add a language model, please
take a look at [How to combine n-gram language models with speech recognition models](#how-to-combine-n-gram-with-model).
During the event, the speech recognition system will be evaluated on both the Common Voice `"test"` split
of the participants' chosen language as well as the *real-world* `"dev"` data provided by
the Hugging Face team.
At the end of the robust speech recognition challenge, the speech recognition system will also be evaluated on the
*real-world* `"test"` data provided by the Hugging Face team. Each participant should add an
`eval.py` script to her/his model repository in a specific format that lets one easily
evaluate the speech recognition system on both Common Voice's `"test"` data as well as the *real-world* audio
data. Please read through the [Evaluation](#evaluation) section to make sure your evaluation script is in the correct format. Speech recognition systems
with evaluation scripts in an incorrect format can sadly not be considered for the Challenge.
At the end of the event, the best performing speech recognition system
will receive a prize 🏆 - more information regarding the prizes can be found under [Prizes](#prizes).
We believe that framing the event as a competition is more fun, but at the core, the event is about
creating speech recognition systems in as many languages as possible as a community.
This can be achieved by working together, helping each other to solve bugs, share important findings, etc...🤗
**Note**:
Please, read through the section on [Communication & Problems](#communication-and-problems) to make sure you
know how to ask for help, etc...
All important announcements will be made on discord. Please make sure that
you've joined [this discord channel](https://discord.gg/SHr5wC7m)
Also, please make sure that you have been added to the [Speech Event Organization](https://huggingface.co/speech-recognition-community-v2).
You should have received an invite by email. If you didn't receive an invite, please contact the organizers, *e.g.* Anton, Patrick, or Omar directly on discord.
## Important dates
## Data and preprocessing
In this section, we will quickly go over how to find suitable training data and
how to preprocess it.
To begin with, **all data except Common Voice's `"test"` data can be used as training data.**
The exception includes all Common Voice versions as the test data split of later Common Voice versions often
overlaps with the one of previous versions, *e.g.* the test data of Common Voice 7 in English is
to a big part identical to the test data of Common Voice 6 in English:
```python
load_dataset("mozilla-foundation/common_voice_7_0", "en", split="test")
```
includes more or less the same data as
```python
load_dataset("mozilla-foundation/common_voice_6_1", "en", split="test")
```
However, we strongly encourage participants to make use of Common Voice's other splits, *e.g.* `"train"` and `"validation"`.
For most languages, the Common Voice dataset offers already a decent amount of training data. It is usually
always advantageous to collect additional data. To do so, the participants are in a first step encouraged to search the
Hugging Face Hub for additional audio data, for example by selecting the category
["speech-processing"](https://huggingface.co/datasets?task_categories=task_categories:speech-processing&sort=downloads).
All datasets that are available on the Hub can be downloaded via the 🤗 Datasets library in the same way Common Voice is downloaded.
If one wants to combine multiple datasets for training, it might make sense to take a look at
the [`interleave_datasets`](https://huggingface.co/docs/datasets/package_reference/main_classes?highlight=interleave#datasets.interleave_datasets) function.
In addition, participants can also make use of their audio data. Here, please make sure that you **are allowed to use the audio data**. E.g., if audio data
is taken from media platforms, such as YouTube, it should be verified that the media platform and the owner of the data have given her/his approval to use the audio
data in the context of machine learning research. If you are not sure whether the data you want to use has the appropriate licensing, please contact the Hugging Face
team on discord.
Next, let's talk about preprocessing. Audio data and transcriptions have to be brought into the correct format when
training the acoustic model (example shown in [How to fine-tune an acoustic model](#how-to-finetune-an-acoustic-model)).
It is recommended that this is done by using 🤗 Datasets `.map()` function as shown
[here](https://github.com/huggingface/transformers/blob/9a2dabae7002258e41419491c73dd43ad61b5de7/examples/pytorch/speech-recognition/run_speech_recognition_ctc.py#L444). As can be
see we can pass some characters that will be removed from the transcriptions, *e.g.*: `--chars_to_ignore , ? . ! - \; \: \" “ % ‘ ” � \`
on the official ["Single GPU Example"](https://github.com/huggingface/transformers/tree/main/examples/pytorch/speech-recognition#single-gpu-ctc).
The participants are free to modify this preprocessing by removing more characters or even replacing characters as
it is done in the [official blog post](https://github.com/huggingface/transformers/blob/9a2dabae7002258e41419491c73dd43ad61b5de7/examples/pytorch/speech-recognition/run_speech_recognition_ctc.py#L444).
**However**, there are some rules regarding what characters are allowed to be removed/replaced and which are not.
These rules are not this straightforward and therefore often have to be evaluated case-by-case.
It is allowed (and recommended) to normalize the data to only have lower-case characters. It is also allowed (and recommended) to remove typographical
symbols and punctuation marks. A list of such symbols can *e.g.* be found [here](https://en.wikipedia.org/wiki/List_of_typographical_symbols_and_punctuation_marks) - however here we already must be careful. We should **not** remove a symbol that would change the meaning of the words, *e.g.* in English,
we should not remove the single quotation mark `'` since it would change the meaning of the word `"it's"` to `"its"` which would then be incorrect.
So the golden rule here is to not remove any characters that could change the meaning of a word into another word. This is not always obvious and should
be given some consideration. As another example, it is fine to remove the "Hyphen-minus" sign "`-`" since it doesn't change the
meaning of a word to another one. *E.g.* "`fine-tuning`" would be changed to "`finetuning`" which has still the same meaning.
Since those choices are not always obvious when in doubt feel free to ask on Discord or even better post your question on the forum, as was
done, *e.g.* [here](https://discuss.huggingface.co/t/spanish-asr-fine-tuning-wav2vec2/4586).
## How to install relevant libraries
The following libraries are required to fine-tune a speech model with 🤗 Transformers and 🤗 Datasets in PyTorch.
- [PyTorch](https://pytorch.org/)
- [Transformers](https://github.com/huggingface/transformers)
- [Datasets](https://github.com/huggingface/datasets)
We recommend installing the above libraries in a [virtual environment](https://docs.python.org/3/library/venv.html).
If you're unfamiliar with Python virtual environments, check out the [user guide](https://packaging.python.org/guides/installing-using-pip-and-virtual-environments/). Create a virtual environment with the version of Python you're going
to use and activate it.
You should be able to run the command:
```bash
python3 -m venv <your-venv-name>
```
You can activate your venv by running
```bash
source ~/<your-venv-name>/bin/activate
```
To begin with please make sure you have PyTorch and CUDA correctly installed.
The following command should return ``True``:
```bash
python -c "import torch; print(torch.cuda.is_available())"
```
If the above command doesn't print ``True``, in the first step, please follow the
instructions [here](https://pytorch.org/) to install PyTorch with CUDA.
We strongly recommend making use of the provided PyTorch examples scripts in [transformers/examples/pytorch/speech-recognition](https://github.com/huggingface/transformers/tree/main/examples/pytorch/speech-recognition) to train your speech recognition
system.
In all likelihood, you will adjust one of the example scripts, so we recommend forking and cloning the 🤗 Transformers repository as follows.
1. Fork the [repository](https://github.com/huggingface/transformers) by
clicking on the 'Fork' button on the repository's page. This creates a copy of the code
under your GitHub user account.
2. Clone your fork to your local disk, and add the base repository as a remote:
```bash
$ git clone https://github.com/<your Github handle>/transformers.git
$ cd transformers
$ git remote add upstream https://github.com/huggingface/transformers.git
```
3. Create a new branch to hold your development changes. This is especially useful to share code changes with your team:
```bash
$ git checkout -b a-descriptive-name-for-my-project
```
4. Set up a PyTorch environment by running the following command your virtual environment:
```bash
$ pip install -e ".[torch-speech]"
```
(If transformers was already installed in the virtual environment, remove
it with `pip uninstall transformers` before reinstalling it in editable
mode with the `-e` flag.)
If you have already cloned that repo, you might need to `git pull` to get the most recent changes in the `transformers`
library.
Running this command will automatically install `torch` and the most relevant
libraries required for fine-tuning a speech recognition system.
Next, you should also install the 🤗 Datasets library. We strongly recommend installing the
library from source to profit from the most current additions during the community week.
Simply run the following steps:
```
$ cd ~/
$ git clone https://github.com/huggingface/datasets.git
$ cd datasets
$ pip install -e ".[streaming]"
```
If you plan on contributing a specific dataset during
the community week, please fork the datasets repository and follow the instructions
[here](https://github.com/huggingface/datasets/blob/master/CONTRIBUTING.md#how-to-create-a-pull-request).
To verify that all libraries are correctly installed, you can run the following command in a Python shell.
It verifies that both `transformers` and `datasets` have been correclty installed.
```python
from transformers import AutoModelForCTC, AutoProcessor
from datasets import load_dataset
dummy_dataset = load_dataset("common_voice", "ab", split="test")
model = AutoModelForCTC.from_pretrained("hf-internal-testing/tiny-random-wav2vec2")
model.to("cuda")
processor = AutoProcessor.from_pretrained("hf-internal-testing/tiny-random-wav2vec2")
input_values = processor(dummy_dataset[0]["audio"]["array"], return_tensors="pt", sampling_rate=16_000).input_values
input_values = input_values.to("cuda")
logits = model(input_values).logits
assert logits.shape[-1] == 32
```
## How to finetune an acoustic model
In this section, we show you how to fine-tune a pre-trained [XLS-R Model](https://huggingface.co/docs/transformers/model_doc/xls_r) on the [Common Voice 7 dataset](https://huggingface.co/datasets/mozilla-foundation/common_voice_7_0).
We recommend fine-tuning one of the following pre-trained XLS-R checkpoints:
- [300M parameters version](https://huggingface.co/facebook/wav2vec2-xls-r-300m)
- [1B parameters version](https://huggingface.co/facebook/wav2vec2-xls-r-1b)
- [2B parameters version](https://huggingface.co/facebook/wav2vec2-xls-r-2b)
To begin with, please note that to use the Common Voice dataset, you
have to accept that **your email address** and **username** are shared with the
mozilla-foundation. To get access to the dataset please click on "*Access repository*" [here](https://huggingface.co/datasets/mozilla-foundation/common_voice_7_0).
Next, we recommended that you get familiar with the XLS-R model and its capabilities.
In collaboration with [Fairseq's Wav2Vec2 team](https://github.com/pytorch/fairseq/tree/main/examples/wav2vec),
we've written ["Fine-tuning XLS-R for Multi-Lingual ASR with 🤗 Transformers"](https://huggingface.co/blog/fine-tune-xlsr-wav2vec2) which gives an in-detail explanation of how XLS-R functions and how it can be fine-tuned.
The blog can also be opened and directly fine-tuned in a google colab notebook.
In this section, we will explain how to fine-tune the model on a local machine.
1. **Log in**
To begin with, you should check that you are correctly logged in and that you have `git-lfs` installed so that your fine-tuned model can automatically be uploaded.
Run:
```bash
huggingface-cli login
```
to login. It is recommended to login with your access token that can be found under your hugging face profile (icon in the top right corner on [hf.co](http://hf.co/), then Settings -> Access Tokens -> User Access Tokens -> New Token (if haven't generated one already)
You can then copy-paste this token to log in locally.
2. **Create your model repository**
First, let's make sure that `git-lfs` is correctly installed. To so, simply run:
```bash
git-lfs -v
```
The output should show something like `git-lfs/2.13.2 (GitHub; linux amd64; go 1.15.4)`. If your console states that the `git-lfs` command was not found, please make
sure to install it [here](https://git-lfs.github.com/) or simply via:
```bash
sudo apt-get install git-lfs
```
Now you can create your model repository which will contain all relevant files to
reproduce your training. You can either directly create the model repository on the
Hub (Settings -> New Model) or via the CLI. Here we choose to use the CLI instead.
Assuming that we want to call our model repository *xls-r-ab-test*, we can run the
following command:
```bash
huggingface-cli repo create xls-r-ab-test
```
You can now see the model on the Hub, *e.g.* under https://huggingface.co/hf-test/xls-r-ab-test .
Let's clone the repository so that we can define our training script inside.
```bash
git lfs install
git clone https://huggingface.co/hf-test/xls-r-ab-test
```
3. **Add your training script and `run`-command to the repository**
We encourage participants to add all relevant files for training directly to the
directory so that everything is fully reproducible.
Let's first copy-paste the official training script from our clone
of `transformers` to our just created directory:
```bash
cp ~/transformers/examples/pytorch/speech-recognition/run_speech_recognition_ctc.py ./
```
Next, we'll create a bash file to define the hyper-parameters and configurations
for training. More detailed information on different settings (single-GPU vs. multi-GPU) can be found [here](https://github.com/huggingface/transformers/tree/main/examples/pytorch/speech-recognition#connectionist-temporal-classification).
For demonstration purposes, we will use a dummy XLS-R model `model_name_or_path="hf-test/xls-r-dummy"` on the very low-resource language of "Abkhaz" of [Common Voice 7](https://huggingface.co/datasets/mozilla-foundation/common_voice_7_0): `dataset_config_name="ab"` for just a single epoch.
Before starting to train, let's make sure we have installed all the required libraries. You might want to run:
```bash
pip install -r ~/transformers/examples/pytorch/speech-recognition/requirements.txt
```
Alright, finally we can define the training script. We'll simply use some
dummy hyper-parameters and configurations for demonstration purposes.
Note that we add the flag `--use_auth_token` so that datasets requiring access,
such as [Common Voice 7](https://huggingface.co/datasets/mozilla-foundation/common_voice_7_0) can be downloaded. In addition, we add the `--push_to_hub` flag to make use of the
[Trainers `push_to-hub` functionality](https://huggingface.co/docs/transformers/main/en/main_classes/trainer#transformers.Trainer.push_to_hub) so that your model will be automatically uploaded to the Hub.
Let's copy the following code snippet in a file called `run.sh`
```bash
echo '''python run_speech_recognition_ctc.py \
--dataset_name="mozilla-foundation/common_voice_7_0" \
--model_name_or_path="hf-test/xls-r-dummy" \
--dataset_config_name="ab" \
--output_dir="./" \
--overwrite_output_dir \
--max_steps="10" \
--per_device_train_batch_size="2" \
--learning_rate="3e-4" \
--save_total_limit="1" \
--evaluation_strategy="steps" \
--text_column_name="sentence" \
--length_column_name="input_length" \
--save_steps="5" \
--layerdrop="0.0" \
--freeze_feature_encoder \
--gradient_checkpointing \
--fp16 \
--group_by_length \
--push_to_hub \
--use_auth_token \
--do_train --do_eval''' > run.sh
```
4. **Start training**
Now all that is left to do is to start training the model by executing the
run file.
```bash
bash run.sh
```
The training should not take more than a couple of minutes.
During the training intermediate saved checkpoints are automatically uploaded to
your model repository as can be seen [on this commit](https://huggingface.co/hf-test/xls-r-ab-test/commit/0eb19a0fca4d7d163997b59663d98cd856022aa6) .
At the end of the training, the [Trainer](https://huggingface.co/docs/transformers/main/en/main_classes/trainer) automatically creates a nice model card and all
relevant files are uploaded.
5. **Tips for real model training**
The above steps illustrate how a model can technically be fine-tuned.
However as you can see on the model card [hf-test/xls-r-ab-test](https://huggingface.co/hf-test/xls-r-ab-test), our demonstration has a very poor performance which is
not surprising given that we trained for just 10 steps on a randomly initialized
model.
For real model training, it is recommended to use one of the actual pre-trained XLS-R models:
- [300M parameters version](https://huggingface.co/facebook/wav2vec2-xls-r-300m)
- [1B parameters version](https://huggingface.co/facebook/wav2vec2-xls-r-1b)
- [2B parameters version](https://huggingface.co/facebook/wav2vec2-xls-r-2b)
Also, the hyper-parameters should be carefully chosen depending on the dataset.
As an example, we will fine-tune the 300M parameters model on Swedish on a single
TITAN RTX 24GB GPU.
The model will be called `"xls-r-300m-sv"`.
Following the above steps we first create the model:
```bash
huggingface-cli repo create xls-r-300m-sv
```
, clone it locally (assuming the `<username>` is `hf-test`)
```bash
git clone hf-test/xls-r-300m-sv
```
, and, define the following hyperparameters for training
```bash
echo '''python run_speech_recognition_ctc.py \
--dataset_name="mozilla-foundation/common_voice_7_0" \
--model_name_or_path="facebook/wav2vec2-xls-r-300m" \
--dataset_config_name="sv-SE" \
--output_dir="./" \
--overwrite_output_dir \
--num_train_epochs="50" \
--per_device_train_batch_size="8" \
--per_device_eval_batch_size="8" \
--gradient_accumulation_steps="4" \
--learning_rate="7.5e-5" \
--warmup_steps="2000" \
--length_column_name="input_length" \
--evaluation_strategy="steps" \
--text_column_name="sentence" \
--chars_to_ignore , ? . ! \- \; \: \" “ % ‘ ” � — ’ … – \
--save_steps="500" \
--eval_steps="500" \
--logging_steps="100" \
--layerdrop="0.0" \
--activation_dropout="0.1" \
--save_total_limit="3" \
--freeze_feature_encoder \
--feat_proj_dropout="0.0" \
--mask_time_prob="0.75" \
--mask_time_length="10" \
--mask_feature_prob="0.25" \
--mask_feature_length="64" \
--gradient_checkpointing \
--use_auth_token \
--fp16 \
--group_by_length \
--do_train --do_eval \
--push_to_hub''' > run.sh
```
The training takes *ca.* 7 hours and yields a reasonable test word
error rate of 27% as can be seen on the automatically generated [model card](https://huggingface.co/hf-test/xls-r-300m-sv).
The above-chosen hyperparameters probably work quite well on a range of different
datasets and languages but are by no means optimal. It is up to you to find a good set of
hyperparameters.
## How to finetune with OVH cloud
[](https://youtu.be/XkMnYocAEO0) For a more detailed guide on setting up OVHcloud please watch this video: https://youtu.be/XkMnYocAEO0
### Creating an OVHCloud account
*TIP*: If you haven't created a project on OVHcloud yet, make sure you've received your GPU voucher code *beforehand*,
so that you can skip entering the credit card information.
1. If you're a US citizen, create an account via [OVHcloud.CA](https://ovhcloud.ca/).
If you're from anywhere else in the world, create an account via [OVHcloud.COM](https://ovhcloud.com/).
2. Once logged in, click `Public Cloud` from the top menu and then click `Create your first OVH Public Cloud project`.
Then enter a project name (e.g. "huggingface"), enter your voucher code, and click `Continue` -> `Create my project`.
*Note: if you see a request for credit card details during the last step, and you can't skip it, then your voucher code
is invalid. Please report it to the [#ovh-support](https://discord.gg/p4qqDV3M) channel on Discord.*
### Setting up an AI notebook
1. Go to the `Public Cloud` page and select `Project Management` -> `Users & Roles` from the menu on the left.
2. Click `+ Add user`. Write a user description (e.g. `AI Trainer`), and select an `AI Training Operator` user role.
Click `Confirm`.
3. Write down the *username* and *password* (at the top of the screen) somewhere. They will be needed during step 7.
4. Select `AI & Machine Learning` -> `AI Training` from the menu on the left.
Click `+ Launch a new job` on the AI Training page.
5. On the `Launch a new job` page:
* In `1. Choose a region` select a region closest to you.
* In `2. Enter the Docker image` select `Custom image` -> `baaastijn/ovh_huggingface`.
* You can skip steps `3.` and `4.` if you will be using the Hugging Face Hub to store the models after training.
* In `5. Configure your job` select **1** `GPU`.
* Validate the info and Create the job.
6. On the `AI Training Jobs` screen wait until the job's status changes from `Pending` to `Running`.
7. Click `HTTP Access` from the Job's details page and log in with the AI training user you've created earlier.
Once logged in, you can close the page and click `HTTP Access` to launch a JupyterLab notebook.
8. Awesome, now you have a free GPU-enabled Jupyter instance!
**Note**: If you're an experienced Docker user, feel free to create a custom docker image with all of the needed packages
like the one in step 5. The Dockerfile for it is available here:
[baaastijn/Dockerimages](https://github.com/baaastijn/Dockerimages/tree/main/Hugginface_challenge_speech).
Once you've built your image, push it to https://hub.docker.com/ and select it during the OVHcloud job creation.
For more quick tutorials about OVHcloud AI products, check out the showcase https://vimeo.com/showcase/8903300
## How to combine n-gram with acoustic model
Having trained a speech recognition model with CTC as shown in the section above,
one can further improve the model's performance by adding an **n-gram language model**
to the decoding process of the model. By doing so, we are replacing the naive greedy decoding
with **n-gram-boosted** beam search decoding.
N-gram language models can be built on CPU in just a few minutes. *N-gram-boosted* beam search decoding noticeably slows down the
inference time, but also yields significant word error rates improvements - usually between 10-40 %.
You can find an in-detail blog post on how to build an *n-gram* [here](https://huggingface.co/blog/wav2vec2-with-ngram).
The blog post can be opened in a google colab and by adapting three lines of the example for your use case, one can directly
create an *n-gram* in the google colab.
The blog post gives in-detail instructions on how to build an n-gram and how to add it to your trained speech recognition model.
- why one should add an *n-gram* to her/his speech recognition system,
- how to build an *n-gram*, and,
- how to add the built *n-gram* the speech recognition system for seamless decoding
Our previously trained model - [xls-r-300m-sv](https://huggingface.co/hf-test/xls-r-300m-sv) - enjoys a 30% word error rate reduction after
having added an n-gram. As shown in the example of the blog post, we strongly advise participants to upload all files required for combining
the *n-gram* with a trained speech recognition model directly into the same model repository.
## Evaluation
Finally, we have arrived at the most fun part of the challenge - sitting back and
watching the model transcribe audio. If possible, every participant should evaluate
the speech recognition system on the test set of Common Voice 7 and
ideally also on the real-world audio data (if available).
For languages that have neither a Common Voice evaluation dataset nor a real world
evaluation dataset, please contact the organizers on Discord so that we can work
together to find some evaluation data.
As a first step, one should copy the official `eval.py` script to her/his model
repository. Let's use our previously trained [xls-r-300m-sv](https://huggingface.co/hf-test/xls-r-300m-sv) again as an example.
Assuming that we have a clone of the model's repo under `~/xls-r-300m-sv`, we can
copy the `eval.py` script to the repo.
```bash
cp ~/transformers/examples/research_projects/robust-speech-event/eval.py ~/xls-r-300m-sv
```
Next, we should adapt `eval.py` so that it fits our evaluation data. Here it is
important to keep the `eval.py` file in the following format:
- 1. The following input arguments should not be changed and keep their original functionality/meaning (being to load the model and dataset): `"--model_id"`, `"--dataset"`, `"--config"`, `"--split"`. We recommend to not change any of the code written under `if __name__ == "__main__":`.
- 2. The function `def log_results(result: Dataset, args: Dict[str, str])` should also not be changed. The function expects the above names attached to the `args` object as well as a `datasets.Dataset` object, called `result` which includes all predictions and target transcriptions under the names `"predictions"` and `"targets"` respectively.
- 3. All other code can be changed and adapted. Participants are especially invited to change the `def normalize_text(text: str) -> str:` function as this might be a very language and model-training specific function.
- 4. **Important**: It is not allowed to "cheat" in any way when in comes to pre-and postprocessing. In short, "cheating" refers to any of the following:
- a. Somehow giving the model access to the target transcriptions to improve performance. The model is not allowed to use the target transcriptions to generate its predictions.
- b. Pre-processing the target transcriptions in a way that makes the target transcriptions lose their original meaning. This corresponds to what has already been said in [Data and Preprocessing](#data-and-preprocessing) and is somewhat of a grey zone. It means that one should not remove characters that would make a word to lose its meaning. E.g., it is not allowed to replace all `e` in English with `i` and simply make the model learn that `e` and `i` are the same letter for a better word error rate. This would destroy the meaning of words such as `fell -> fill`. However, it is totally fine to normalize (*e.g.* lowercase) all letters, remove punctuation. There can be a lot of language-specific exceptions and in case you are not sure whether your target transcription pre-processing is allowed, please ask on the Discord channel.
Uff, that was a lot of text describing how to make sure your `eval.py` script
is in the correct format. If you have any questions, please ask openly in Discord.
Great, now that we have adapted the `eval.py` script, we can lean back and run the
evaluation.
First, one should evaluate the model on Common Voice 7's test data. This might
already have been done for your acoustic model during training but in case you
added an *n-gram* language model after having fine-tuned the acoustic model, you
should now see a nice improvement.
The command to evaluate our test model [xls-r-300m-sv](https://huggingface.co/hf-test/xls-r-300m-sv) on Common Voice 7's test data is the following:
```bash
cd xls-r-300m-sv
./eval.py --model_id ./ --dataset mozilla-foundation/common_voice_7_0 --config sv-SE --split test --log_outputs
```
To log each of the model's predictions with the target transcriptions, you can just
add the `--log_outputs` flag.
Running this command should automatically create the file:
`mozilla-foundation_common_voice_7_0_sv-SE_test_eval_results.txt` that contains
both the word- and character error rate.
In a few days, we will give everybody access to some real-world audio data for as many languages as possible.
If your language has real-world audio data, it will most likely have audio input
of multiple minutes. 🤗Transformer's [ASR pipeline](https://huggingface.co/docs/transformers/main/en/main_classes/pipelines#transformers.AutomaticSpeechRecognitionPipeline) supports audio chunking out-of-the-box. You only need to specify
how song each audio chunk should be (`chunk_length_s`) and how much audio stride
(`stride_length_s`) each chunk should use.
For more information on the chunking works, please have a look at [this nice blog post](TODO: ).
In the case of `xls-r-300m-sv`, the following command can be run:
```bash
cd xls-r-300m-sv
./eval.py --model_id hf-test/xls-r-300m-sv --dataset <to-be-announced> --config sv --split validation --chunk_length_s 5.0 --stride_length_s 1.0 --log_outputs
```
Great, now you should have successfully evaluated your model. Finally, there is one
**important** thing you should do so that your model is taken into account
for the final evaluation. You should add two tags to your model, one being `robust-speech-event`, one being the ISO code of your chosen language, *e.g.* `"sv"` for the
exemplary model we used above. You can find a list of all available languages and
their ISO code [here](https://huggingface.co/languages).
To add the tags, simply edit the README.md of your model repository and add
```
- "sv"
- "robust-speech-event"
```
under `tags:` as done [here](https://huggingface.co/hf-test/xls-r-300m-sv/commit/a495fd70c96bb7d019729be9273a265c2557345e).
To verify that you've added the tags correctly make sure that your model
appears when clicking on [this link](https://huggingface.co/models?other=robust-speech-event).
Great that's it! This should give you all the necessary information to evaluate
your model. For the final evaluation, we will verify each evaluation result to
determine the final score and thereby the winning models for each language.
The final score is calculated as follows:
```bash
FINAL_SCORE = 1/3 * WER_Common_Voice_7_test + 1/3 * WER_REAL_AUDIO_DEV + 1/3 * WER_REAL_AUDIO_TEST
```
The dataset `WER_REAL_AUDIO_TEST` is hidden and will only be published
at the end of the robust speech challenge.
If there is no real audio data for your language the final score will be
computed solely based on the Common Voice 7 test dataset. If there is also
no Common Voice 7 test dataset for your language, we will see together how to
score your model - if this is the case, please don't be discouraged. We are
especially excited about speech recognition systems of such low-resource
languages and will make sure that we'll decide on a good approach to evaluating
your model.
## Prizes
TODO(Patrick, Omar, ...)
## Communication and Problems
If you encounter any problems or have any questions, you should use one of the following platforms
depending on your type of problem. Hugging Face is an "open-source-first" organization meaning
that we'll try to solve all problems in the most public and most transparent way possible so that everybody
in the community profits.
The following table summarizes what platform to use for which problem.
- Problem/question/bug with the 🤗 Datasets library that you think is a general problem that also impacts other people, please open an [Issues on Datasets](https://github.com/huggingface/datasets/issues/new?assignees=&labels=bug&template=bug-report.md&title=) and ping @anton-l and @patrickvonplaten.
- Problem/question/bug with the 🤗 Transformers library that you think is a general problem that also impacts other people, please open an [Issues on Transformers](https://github.com/huggingface/transformers/issues/new?assignees=&labels=&template=bug-report.md&title=) and ping @anton-l and @patrickvonplaten.
- Problem/question with a modified, customized training script that is less likely to impact other people, please post your problem/question [on the forum](https://discuss.huggingface.co/) and ping @anton-l and @patrickvonplaten.
- Questions regarding access to the OVHcloud GPU, please ask in the Discord channel **#ovh-support**.
- Other questions regarding the event, rules of the event, or if you are not sure where to post your question, please ask in the Discord channel **#sprint-discussions**.
## Talks
We are very excited to be hosting 2 days of talks from Kensho-Technologies, Mozilla's Common Voice, Meta AI Research and Hugging Face.
### Thursday, January 20th
Speaker | Topic | Time | Video |
|-------------|---------------------------------|------------------------|------------------------|
| Patrick von Platen, Hugging Face | Introduction to Robust Speech Challenge | 4h30pm - 5h00pm UTC | [](https://www.youtube.com/watch?v=X9e5Tto-Iuk)
| Raymond Grossman and Jeremy Lopez, Kensho-Technologies | Pyctcdecode & Speech2text decoding | 5h30pm - 6h00pm UTC | [](https://www.youtube.com/watch?v=mp7fHMTnK9A)
### Friday, January 21th
Speaker | Topic | Time | Video |
|-------------|---------------------------------|------------------------|------------------------|
| Gabriel Habayeb, Mozilla Common Voice | Unlocking global speech with Mozilla Common Voice | 4h30pm - 5h00pm UTC | [](https://www.youtube.com/watch?v=Vvn984QmAVg)
| Changhan Wang, Meta AI Research | XLS-R: Large-Scale Cross-lingual Speech Representation Learning on 128 Languages | 5h30pm - 6h00pm UTC | [](https://www.youtube.com/watch?v=ic_J7ZCROBM)
### Talks & Speakers
#### Patrick von Platen, Research Engineer, Hugging Face
- Talk: Introduction to Robust Speech Challenge
- Abstract: In this talk, Patrick outlines the Robust Speech Challenge and gives tips and tricks on how to train and evaluate speech recognition systems with 🤗 Transformers and 🤗 Datasets, and PyTorch.
- Speaker info: Patrick von Platen is a research engineer at Hugging Face and one of the core maintainers of the popular Transformers library. He specializes in speech recognition, encoder-decoder models, and long-range sequence modeling. Before joining Hugging Face, Patrick researched speech recognition at Uber AI, Cambridge University, and RWTH Aachen University.
#### Raymond Grossman, Jeremy Lopez, Machine Learning Engineer, Kensho Technologies
- Talk: PyCTCDecode & Speech2text decoding
- Abstract: PyCTCDecode is a fast and feature-rich CTC beam search decoder for speech recognition written in Python, providing n-gram (kenlm) language model support similar to PaddlePaddle's decoder, but incorporating many new features such as byte pair encoding and real-time decoding to support models like Nvidia's Conformer-CTC or Facebook's Wav2Vec2.
- Speaker info :
- Raymond works as a machine learning engineer at Kensho Technologies, specializing in speech and natural language domains. Before coming to Kensho, he studied mathematics at Princeton and was an avid Kaggler under the moniker @ToTrainThemIsMyCause.
- Jeremy is a machine learning engineer at Kensho Technologies and has worked on a variety of different topics including search and speech recognition. Before working at Kensho, he earned a PhD in experimental particle physics at MIT and continued doing physics research as a postdoc at the University of Colorado Boulder.
#### Gabriel Habayeb, Data Engineer, Common Voice @ Mozilla
- Talk: Unlocking global speech with Mozilla Common Voice
- Abstract: Hear from Common Voice Data Engineer Gabriel Habayeb (Mozilla Foundation) as he talks about how Common Voice makes it easy to crowdsource voice data in global languages, as well as getting key insights into the dataset itself, how we maintain quality, use metadata - and our plans for the future!
- Speaker info: Gabriel is a software developer with the Common Voice team at the Mozilla Foundation with a focus on data engineering. Before joining the Foundation, he spent the last six years working across different industries, including education, enterprise and not-for-profit organizations.
#### Changhan Wang, Main author of XLS-R and Research Engineer, Meta AI Research
- Talk: XLS-R: Large-Scale Cross-lingual Speech Representation Learning on 128 Languages
- Abstract: In this talk, Changhan will present XLS-R, a large-scale model for cross-lingual speech representation learning based on wav2vec 2.0. XLS-R has up to 2B parameters and was trained on nearly half a million hours of publicly available speech audio in 128 languages, an order of magnitude more public data than the largest known prior work. On the CoVoST-2 speech translation benchmark, XLS-R improves the previous state of the art by an average of 7.4 BLEU over 21 translation directions into English. For speech recognition, XLS-R improves over the best known prior work on BABEL, MLS, CommonVoice as well as VoxPopuli, lowering error rates by 14-34% relative on average. XLS-R also sets a new state of the art on VoxLingua107 language identification. The XLS-R team hopes to work together with the open-source community to improve speech processing tasks for many more languages of the world.
## General Tips and Tricks
- Memory efficient training:
In case, you are getting out-of-memory errors on your GPU, we recommend to use
[bitsandbytes](https://github.com/TimDettmers/bitsandbytes) to replace the
native memory-intensive Adam optimizer with the one of `bitsandbytes`. You
can simply run the script `./run_speech_recognition_ctc_bnb.py` provided in this
folder that makes use of `bitsandbytes` instead of the official one.
- Dataset streaming
TODO(Patrick)
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/robust-speech-event/run_speech_recognition_ctc_bnb.py
|
#!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
""" Fine-tuning a 🤗 Transformers CTC model for automatic speech recognition"""
import functools
import json
import logging
import os
import re
import sys
import warnings
from dataclasses import dataclass, field
from typing import Dict, List, Optional, Union
import bitsandbytes as bnb
import datasets
import numpy as np
import torch
from datasets import DatasetDict, load_dataset, load_metric
import transformers
from transformers import (
AutoConfig,
AutoFeatureExtractor,
AutoModelForCTC,
AutoProcessor,
AutoTokenizer,
HfArgumentParser,
Trainer,
TrainingArguments,
Wav2Vec2Processor,
set_seed,
)
from transformers.trainer_pt_utils import get_parameter_names
from transformers.trainer_utils import get_last_checkpoint, is_main_process
from transformers.utils import check_min_version
from transformers.utils.versions import require_version
# Will error if the minimal version of Transformers is not installed. Remove at your own risks.
check_min_version("4.16.0.dev0")
require_version("datasets>=1.13.3", "To fix: pip install -r examples/pytorch/text-classification/requirements.txt")
logger = logging.getLogger(__name__)
def list_field(default=None, metadata=None):
return field(default_factory=lambda: default, metadata=metadata)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
tokenizer_name_or_path: Optional[str] = field(
default=None,
metadata={"help": "Path to pretrained tokenizer or tokenizer identifier from huggingface.co/models"},
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
freeze_feature_encoder: bool = field(
default=True, metadata={"help": "Whether to freeze the feature encoder layers of the model."}
)
attention_dropout: float = field(
default=0.0, metadata={"help": "The dropout ratio for the attention probabilities."}
)
activation_dropout: float = field(
default=0.0, metadata={"help": "The dropout ratio for activations inside the fully connected layer."}
)
feat_proj_dropout: float = field(default=0.0, metadata={"help": "The dropout ratio for the projected features."})
hidden_dropout: float = field(
default=0.0,
metadata={
"help": "The dropout probability for all fully connected layers in the embeddings, encoder, and pooler."
},
)
final_dropout: float = field(
default=0.0,
metadata={"help": "The dropout probability for the final projection layer."},
)
mask_time_prob: float = field(
default=0.05,
metadata={
"help": (
"Probability of each feature vector along the time axis to be chosen as the start of the vector "
"span to be masked. Approximately ``mask_time_prob * sequence_length // mask_time_length`` feature "
"vectors will be masked along the time axis."
)
},
)
mask_time_length: int = field(
default=10,
metadata={"help": "Length of vector span to mask along the time axis."},
)
mask_feature_prob: float = field(
default=0.0,
metadata={
"help": (
"Probability of each feature vector along the feature axis to be chosen as the start of the vectorspan"
" to be masked. Approximately ``mask_feature_prob * sequence_length // mask_feature_length`` feature"
" bins will be masked along the time axis."
)
},
)
mask_feature_length: int = field(
default=10,
metadata={"help": "Length of vector span to mask along the feature axis."},
)
layerdrop: float = field(default=0.0, metadata={"help": "The LayerDrop probability."})
ctc_loss_reduction: Optional[str] = field(
default="mean", metadata={"help": "The way the ctc loss should be reduced. Should be one of 'mean' or 'sum'."}
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
Using `HfArgumentParser` we can turn this class
into argparse arguments to be able to specify them on
the command line.
"""
dataset_name: str = field(
metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
dataset_config_name: str = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_split_name: str = field(
default="train+validation",
metadata={
"help": "The name of the training data set split to use (via the datasets library). Defaults to 'train'"
},
)
eval_split_name: str = field(
default="test",
metadata={
"help": "The name of the training data set split to use (via the datasets library). Defaults to 'train'"
},
)
audio_column_name: str = field(
default="audio",
metadata={"help": "The name of the dataset column containing the audio data. Defaults to 'audio'"},
)
text_column_name: str = field(
default="text",
metadata={"help": "The name of the dataset column containing the text data. Defaults to 'text'"},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached preprocessed datasets or not."}
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of validation examples to this "
"value if set."
)
},
)
chars_to_ignore: Optional[List[str]] = list_field(
default=None,
metadata={"help": "A list of characters to remove from the transcripts."},
)
eval_metrics: List[str] = list_field(
default=["wer"],
metadata={"help": "A list of metrics the model should be evaluated on. E.g. `'wer cer'`"},
)
max_duration_in_seconds: float = field(
default=20.0,
metadata={
"help": (
"Filter audio files that are longer than `max_duration_in_seconds` seconds to"
" 'max_duration_in_seconds`"
)
},
)
min_duration_in_seconds: float = field(
default=0.0, metadata={"help": "Filter audio files that are shorter than `min_duration_in_seconds` seconds"}
)
preprocessing_only: bool = field(
default=False,
metadata={
"help": (
"Whether to only do data preprocessing and skip training. This is especially useful when data"
" preprocessing errors out in distributed training due to timeout. In this case, one should run the"
" preprocessing in a non-distributed setup with `preprocessing_only=True` so that the cached datasets"
" can consequently be loaded in distributed training"
)
},
)
use_auth_token: bool = field(
default=False,
metadata={
"help": (
"If :obj:`True`, will use the token generated when running"
":obj:`huggingface-cli login` as HTTP bearer authorization for remote files."
)
},
)
unk_token: str = field(
default="[UNK]",
metadata={"help": "The unk token for the tokenizer"},
)
pad_token: str = field(
default="[PAD]",
metadata={"help": "The padding token for the tokenizer"},
)
word_delimiter_token: str = field(
default="|",
metadata={"help": "The word delimiter token for the tokenizer"},
)
phoneme_language: Optional[str] = field(
default=None,
metadata={
"help": (
"The target language that should be used be"
" passed to the tokenizer for tokenization. Note that"
" this is only relevant if the model classifies the"
" input audio to a sequence of phoneme sequences."
)
},
)
@dataclass
class DataCollatorCTCWithPadding:
"""
Data collator that will dynamically pad the inputs received.
Args:
processor (:class:`~transformers.AutoProcessor`)
The processor used for proccessing the data.
padding (:obj:`bool`, :obj:`str` or :class:`~transformers.tokenization_utils_base.PaddingStrategy`, `optional`, defaults to :obj:`True`):
Select a strategy to pad the returned sequences (according to the model's padding side and padding index)
among:
* :obj:`True` or :obj:`'longest'`: Pad to the longest sequence in the batch (or no padding if only a single
sequence if provided).
* :obj:`'max_length'`: Pad to a maximum length specified with the argument :obj:`max_length` or to the
maximum acceptable input length for the model if that argument is not provided.
* :obj:`False` or :obj:`'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of
different lengths).
max_length (:obj:`int`, `optional`):
Maximum length of the ``input_values`` of the returned list and optionally padding length (see above).
max_length_labels (:obj:`int`, `optional`):
Maximum length of the ``labels`` returned list and optionally padding length (see above).
pad_to_multiple_of (:obj:`int`, `optional`):
If set will pad the sequence to a multiple of the provided value.
This is especially useful to enable the use of Tensor Cores on NVIDIA hardware with compute capability >=
7.5 (Volta).
"""
processor: AutoProcessor
padding: Union[bool, str] = "longest"
pad_to_multiple_of: Optional[int] = None
pad_to_multiple_of_labels: Optional[int] = None
def __call__(self, features: List[Dict[str, Union[List[int], torch.Tensor]]]) -> Dict[str, torch.Tensor]:
# split inputs and labels since they have to be of different lengths and need
# different padding methods
input_features = [{"input_values": feature["input_values"]} for feature in features]
label_features = [{"input_ids": feature["labels"]} for feature in features]
batch = self.processor.pad(
input_features,
padding=self.padding,
pad_to_multiple_of=self.pad_to_multiple_of,
return_tensors="pt",
)
labels_batch = self.processor.pad(
labels=label_features,
padding=self.padding,
pad_to_multiple_of=self.pad_to_multiple_of_labels,
return_tensors="pt",
)
# replace padding with -100 to ignore loss correctly
labels = labels_batch["input_ids"].masked_fill(labels_batch.attention_mask.ne(1), -100)
batch["labels"] = labels
return batch
def create_vocabulary_from_data(
datasets: DatasetDict,
word_delimiter_token: Optional[str] = None,
unk_token: Optional[str] = None,
pad_token: Optional[str] = None,
):
# Given training and test labels create vocabulary
def extract_all_chars(batch):
all_text = " ".join(batch["target_text"])
vocab = list(set(all_text))
return {"vocab": [vocab], "all_text": [all_text]}
vocabs = datasets.map(
extract_all_chars,
batched=True,
batch_size=-1,
keep_in_memory=True,
remove_columns=datasets["train"].column_names,
)
# take union of all unique characters in each dataset
vocab_set = functools.reduce(
lambda vocab_1, vocab_2: set(vocab_1["vocab"][0]) | set(vocab_2["vocab"][0]), vocabs.values()
)
vocab_dict = {v: k for k, v in enumerate(sorted(vocab_set))}
# replace white space with delimiter token
if word_delimiter_token is not None:
vocab_dict[word_delimiter_token] = vocab_dict[" "]
del vocab_dict[" "]
# add unk and pad token
if unk_token is not None:
vocab_dict[unk_token] = len(vocab_dict)
if pad_token is not None:
vocab_dict[pad_token] = len(vocab_dict)
return vocab_dict
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
# Detecting last checkpoint.
last_checkpoint = None
if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
last_checkpoint = get_last_checkpoint(training_args.output_dir)
if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. "
"Use --overwrite_output_dir to overcome."
)
elif last_checkpoint is not None:
logger.info(
f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
"the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
logger.setLevel(logging.INFO if is_main_process(training_args.local_rank) else logging.WARN)
# Log on each process the small summary:
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}, "
f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
transformers.utils.logging.set_verbosity_info()
logger.info("Training/evaluation parameters %s", training_args)
# Set seed before initializing model.
set_seed(training_args.seed)
# 1. First, let's load the dataset
raw_datasets = DatasetDict()
if training_args.do_train:
raw_datasets["train"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=data_args.train_split_name,
token=data_args.use_auth_token,
)
if data_args.audio_column_name not in raw_datasets["train"].column_names:
raise ValueError(
f"--audio_column_name '{data_args.audio_column_name}' not found in dataset '{data_args.dataset_name}'."
" Make sure to set `--audio_column_name` to the correct audio column - one of"
f" {', '.join(raw_datasets['train'].column_names)}."
)
if data_args.text_column_name not in raw_datasets["train"].column_names:
raise ValueError(
f"--text_column_name {data_args.text_column_name} not found in dataset '{data_args.dataset_name}'. "
"Make sure to set `--text_column_name` to the correct text column - one of "
f"{', '.join(raw_datasets['train'].column_names)}."
)
if data_args.max_train_samples is not None:
raw_datasets["train"] = raw_datasets["train"].select(range(data_args.max_train_samples))
if training_args.do_eval:
raw_datasets["eval"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=data_args.eval_split_name,
token=data_args.use_auth_token,
)
if data_args.max_eval_samples is not None:
raw_datasets["eval"] = raw_datasets["eval"].select(range(data_args.max_eval_samples))
# 2. We remove some special characters from the datasets
# that make training complicated and do not help in transcribing the speech
# E.g. characters, such as `,` and `.` do not really have an acoustic characteristic
# that could be easily picked up by the model
chars_to_ignore_regex = (
f'[{"".join(data_args.chars_to_ignore)}]' if data_args.chars_to_ignore is not None else None
)
text_column_name = data_args.text_column_name
def remove_special_characters(batch):
if chars_to_ignore_regex is not None:
batch["target_text"] = re.sub(chars_to_ignore_regex, "", batch[text_column_name]).lower() + " "
else:
batch["target_text"] = batch[text_column_name].lower() + " "
return batch
with training_args.main_process_first(desc="dataset map special characters removal"):
raw_datasets = raw_datasets.map(
remove_special_characters,
remove_columns=[text_column_name],
desc="remove special characters from datasets",
)
# save special tokens for tokenizer
word_delimiter_token = data_args.word_delimiter_token
unk_token = data_args.unk_token
pad_token = data_args.pad_token
# 3. Next, let's load the config as we might need it to create
# the tokenizer
# load config
config = AutoConfig.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, token=data_args.use_auth_token
)
# 4. Next, if no tokenizer file is defined,
# we create the vocabulary of the model by extracting all unique characters from
# the training and evaluation datasets
# We need to make sure that only first rank saves vocabulary
# make sure all processes wait until vocab is created
tokenizer_name_or_path = model_args.tokenizer_name_or_path
tokenizer_kwargs = {}
if tokenizer_name_or_path is None:
# save vocab in training output dir
tokenizer_name_or_path = training_args.output_dir
vocab_file = os.path.join(tokenizer_name_or_path, "vocab.json")
with training_args.main_process_first():
if training_args.overwrite_output_dir and os.path.isfile(vocab_file):
os.remove(vocab_file)
with training_args.main_process_first(desc="dataset map vocabulary creation"):
if not os.path.isfile(vocab_file):
os.makedirs(tokenizer_name_or_path, exist_ok=True)
vocab_dict = create_vocabulary_from_data(
raw_datasets,
word_delimiter_token=word_delimiter_token,
unk_token=unk_token,
pad_token=pad_token,
)
# save vocab dict to be loaded into tokenizer
with open(vocab_file, "w") as file:
json.dump(vocab_dict, file)
# if tokenizer has just been created
# it is defined by `tokenizer_class` if present in config else by `model_type`
tokenizer_kwargs = {
"config": config if config.tokenizer_class is not None else None,
"tokenizer_type": config.model_type if config.tokenizer_class is None else None,
"unk_token": unk_token,
"pad_token": pad_token,
"word_delimiter_token": word_delimiter_token,
}
# 5. Now we can instantiate the feature extractor, tokenizer and model
# Note for distributed training, the .from_pretrained methods guarantee that only
# one local process can concurrently download model & vocab.
# load feature_extractor and tokenizer
tokenizer = AutoTokenizer.from_pretrained(
tokenizer_name_or_path,
token=data_args.use_auth_token,
**tokenizer_kwargs,
)
feature_extractor = AutoFeatureExtractor.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, token=data_args.use_auth_token
)
# adapt config
config.update(
{
"feat_proj_dropout": model_args.feat_proj_dropout,
"attention_dropout": model_args.attention_dropout,
"hidden_dropout": model_args.hidden_dropout,
"final_dropout": model_args.final_dropout,
"mask_time_prob": model_args.mask_time_prob,
"mask_time_length": model_args.mask_time_length,
"mask_feature_prob": model_args.mask_feature_prob,
"mask_feature_length": model_args.mask_feature_length,
"gradient_checkpointing": training_args.gradient_checkpointing,
"layerdrop": model_args.layerdrop,
"ctc_loss_reduction": model_args.ctc_loss_reduction,
"pad_token_id": tokenizer.pad_token_id,
"vocab_size": len(tokenizer),
"activation_dropout": model_args.activation_dropout,
}
)
# create model
model = AutoModelForCTC.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
config=config,
token=data_args.use_auth_token,
)
# freeze encoder
if model_args.freeze_feature_encoder:
model.freeze_feature_encoder()
# 6. Now we preprocess the datasets including loading the audio, resampling and normalization
# Thankfully, `datasets` takes care of automatically loading and resampling the audio,
# so that we just need to set the correct target sampling rate and normalize the input
# via the `feature_extractor`
# make sure that dataset decodes audio with correct sampling rate
dataset_sampling_rate = next(iter(raw_datasets.values())).features[data_args.audio_column_name].sampling_rate
if dataset_sampling_rate != feature_extractor.sampling_rate:
raw_datasets = raw_datasets.cast_column(
data_args.audio_column_name, datasets.features.Audio(sampling_rate=feature_extractor.sampling_rate)
)
# derive max & min input length for sample rate & max duration
max_input_length = data_args.max_duration_in_seconds * feature_extractor.sampling_rate
min_input_length = data_args.min_duration_in_seconds * feature_extractor.sampling_rate
audio_column_name = data_args.audio_column_name
num_workers = data_args.preprocessing_num_workers
# `phoneme_language` is only relevant if the model is fine-tuned on phoneme classification
phoneme_language = data_args.phoneme_language
# Preprocessing the datasets.
# We need to read the audio files as arrays and tokenize the targets.
def prepare_dataset(batch):
# load audio
sample = batch[audio_column_name]
inputs = feature_extractor(sample["array"], sampling_rate=sample["sampling_rate"])
batch["input_values"] = inputs.input_values[0]
batch["input_length"] = len(batch["input_values"])
# encode targets
additional_kwargs = {}
if phoneme_language is not None:
additional_kwargs["phonemizer_lang"] = phoneme_language
batch["labels"] = tokenizer(batch["target_text"], **additional_kwargs).input_ids
return batch
with training_args.main_process_first(desc="dataset map preprocessing"):
vectorized_datasets = raw_datasets.map(
prepare_dataset,
remove_columns=next(iter(raw_datasets.values())).column_names,
num_proc=num_workers,
desc="preprocess datasets",
)
def is_audio_in_length_range(length):
return length > min_input_length and length < max_input_length
# filter data that is shorter than min_input_length
vectorized_datasets = vectorized_datasets.filter(
is_audio_in_length_range,
num_proc=num_workers,
input_columns=["input_length"],
)
# 7. Next, we can prepare the training.
# Let's use word error rate (WER) as our evaluation metric,
# instantiate a data collator and the trainer
# Define evaluation metrics during training, *i.e.* word error rate, character error rate
eval_metrics = {metric: load_metric(metric) for metric in data_args.eval_metrics}
# for large datasets it is advised to run the preprocessing on a
# single machine first with ``args.preprocessing_only`` since there will mostly likely
# be a timeout when running the script in distributed mode.
# In a second step ``args.preprocessing_only`` can then be set to `False` to load the
# cached dataset
if data_args.preprocessing_only:
logger.info(f"Data preprocessing finished. Files cached at {vectorized_datasets.cache_files}")
return
def compute_metrics(pred):
pred_logits = pred.predictions
pred_ids = np.argmax(pred_logits, axis=-1)
pred.label_ids[pred.label_ids == -100] = tokenizer.pad_token_id
pred_str = tokenizer.batch_decode(pred_ids)
# we do not want to group tokens when computing the metrics
label_str = tokenizer.batch_decode(pred.label_ids, group_tokens=False)
metrics = {k: v.compute(predictions=pred_str, references=label_str) for k, v in eval_metrics.items()}
return metrics
# Now save everything to be able to create a single processor later
if is_main_process(training_args.local_rank):
# save feature extractor, tokenizer and config
feature_extractor.save_pretrained(training_args.output_dir)
tokenizer.save_pretrained(training_args.output_dir)
config.save_pretrained(training_args.output_dir)
try:
processor = AutoProcessor.from_pretrained(training_args.output_dir)
except (OSError, KeyError):
warnings.warn(
"Loading a processor from a feature extractor config that does not"
" include a `processor_class` attribute is deprecated and will be removed in v5. Please add the following "
" attribute to your `preprocessor_config.json` file to suppress this warning: "
" `'processor_class': 'Wav2Vec2Processor'`",
FutureWarning,
)
processor = Wav2Vec2Processor.from_pretrained(training_args.output_dir)
# Instantiate custom data collator
data_collator = DataCollatorCTCWithPadding(processor=processor)
decay_parameters = get_parameter_names(model, [torch.nn.LayerNorm])
decay_parameters = [name for name in decay_parameters if "bias" not in name]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if n in decay_parameters],
"weight_decay": training_args.weight_decay,
},
{
"params": [p for n, p in model.named_parameters() if n not in decay_parameters],
"weight_decay": 0.0,
},
]
optimizer = bnb.optim.Adam8bit(
params=optimizer_grouped_parameters,
lr=training_args.learning_rate,
betas=(training_args.adam_beta1, training_args.adam_beta2),
eps=training_args.adam_epsilon,
)
optimizers = (optimizer, None)
# Initialize Trainer
trainer = Trainer(
model=model,
data_collator=data_collator,
args=training_args,
compute_metrics=compute_metrics,
train_dataset=vectorized_datasets["train"] if training_args.do_train else None,
eval_dataset=vectorized_datasets["eval"] if training_args.do_eval else None,
tokenizer=feature_extractor,
optimizers=optimizers,
)
# 8. Finally, we can start training
# Training
if training_args.do_train:
# use last checkpoint if exist
if last_checkpoint is not None:
checkpoint = last_checkpoint
elif os.path.isdir(model_args.model_name_or_path):
checkpoint = model_args.model_name_or_path
else:
checkpoint = None
train_result = trainer.train(resume_from_checkpoint=checkpoint)
trainer.save_model()
metrics = train_result.metrics
max_train_samples = (
data_args.max_train_samples
if data_args.max_train_samples is not None
else len(vectorized_datasets["train"])
)
metrics["train_samples"] = min(max_train_samples, len(vectorized_datasets["train"]))
trainer.log_metrics("train", metrics)
trainer.save_metrics("train", metrics)
trainer.save_state()
# Evaluation
results = {}
if training_args.do_eval:
logger.info("*** Evaluate ***")
metrics = trainer.evaluate()
max_eval_samples = (
data_args.max_eval_samples if data_args.max_eval_samples is not None else len(vectorized_datasets["eval"])
)
metrics["eval_samples"] = min(max_eval_samples, len(vectorized_datasets["eval"]))
trainer.log_metrics("eval", metrics)
trainer.save_metrics("eval", metrics)
# Write model card and (optionally) push to hub
config_name = data_args.dataset_config_name if data_args.dataset_config_name is not None else "na"
kwargs = {
"finetuned_from": model_args.model_name_or_path,
"tasks": "automatic-speech-recognition",
"tags": ["automatic-speech-recognition", data_args.dataset_name],
"dataset_args": (
f"Config: {config_name}, Training split: {data_args.train_split_name}, Eval split:"
f" {data_args.eval_split_name}"
),
"dataset": f"{data_args.dataset_name.upper()} - {config_name.upper()}",
}
if "common_voice" in data_args.dataset_name:
kwargs["language"] = config_name
if training_args.push_to_hub:
trainer.push_to_hub(**kwargs)
else:
trainer.create_model_card(**kwargs)
return results
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/robust-speech-event/run_speech_recognition_ctc_streaming.py
|
#!/usr/bin/env python
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
""" Fine-tuning a 🤗 Transformers CTC model for automatic speech recognition in streaming mode"""
import logging
import os
import re
import sys
import warnings
from dataclasses import dataclass, field
from typing import Dict, List, Optional, Union
import datasets
import numpy as np
import torch
from datasets import IterableDatasetDict, interleave_datasets, load_dataset, load_metric
from torch.utils.data import IterableDataset
import transformers
from transformers import (
AutoConfig,
AutoFeatureExtractor,
AutoModelForCTC,
AutoProcessor,
AutoTokenizer,
HfArgumentParser,
Trainer,
TrainerCallback,
TrainingArguments,
Wav2Vec2Processor,
set_seed,
)
from transformers.trainer_pt_utils import IterableDatasetShard
from transformers.trainer_utils import get_last_checkpoint, is_main_process
from transformers.utils import check_min_version
from transformers.utils.versions import require_version
# Will error if the minimal version of Transformers is not installed. Remove at your own risk.
check_min_version("4.17.0.dev0")
require_version("datasets>=1.18.2", "To fix: pip install 'datasets>=1.18.2'")
logger = logging.getLogger(__name__)
def list_field(default=None, metadata=None):
return field(default_factory=lambda: default, metadata=metadata)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
tokenizer_name_or_path: Optional[str] = field(
default=None,
metadata={"help": "Path to pretrained tokenizer or tokenizer identifier from huggingface.co/models"},
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
freeze_feature_encoder: bool = field(
default=True, metadata={"help": "Whether to freeze the feature encoder layers of the model."}
)
attention_dropout: float = field(
default=0.0, metadata={"help": "The dropout ratio for the attention probabilities."}
)
activation_dropout: float = field(
default=0.0, metadata={"help": "The dropout ratio for activations inside the fully connected layer."}
)
feat_proj_dropout: float = field(default=0.0, metadata={"help": "The dropout ratio for the projected features."})
hidden_dropout: float = field(
default=0.0,
metadata={
"help": "The dropout probability for all fully connected layers in the embeddings, encoder, and pooler."
},
)
final_dropout: float = field(
default=0.0,
metadata={"help": "The dropout probability for the final projection layer."},
)
mask_time_prob: float = field(
default=0.05,
metadata={
"help": (
"Probability of each feature vector along the time axis to be chosen as the start of the vector "
"span to be masked. Approximately ``mask_time_prob * sequence_length // mask_time_length`` feature "
"vectors will be masked along the time axis."
)
},
)
mask_time_length: int = field(
default=10,
metadata={"help": "Length of vector span to mask along the time axis."},
)
mask_feature_prob: float = field(
default=0.0,
metadata={
"help": (
"Probability of each feature vector along the feature axis to be chosen as the start of the vectorspan"
" to be masked. Approximately ``mask_feature_prob * sequence_length // mask_feature_length`` feature"
" bins will be masked along the time axis."
)
},
)
mask_feature_length: int = field(
default=10,
metadata={"help": "Length of vector span to mask along the feature axis."},
)
layerdrop: float = field(default=0.0, metadata={"help": "The LayerDrop probability."})
ctc_loss_reduction: Optional[str] = field(
default="mean", metadata={"help": "The way the ctc loss should be reduced. Should be one of 'mean' or 'sum'."}
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
Using `HfArgumentParser` we can turn this class
into argparse arguments to be able to specify them on
the command line.
"""
dataset_name: str = field(
metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
dataset_config_name: str = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_split_name: str = field(
default="train+validation",
metadata={
"help": (
"The name of the training data set split to use (via the datasets library). Defaults to "
"'train+validation'"
)
},
)
eval_split_name: str = field(
default="test",
metadata={
"help": "The name of the training data set split to use (via the datasets library). Defaults to 'test'"
},
)
audio_column_name: str = field(
default="audio",
metadata={"help": "The name of the dataset column containing the audio data. Defaults to 'audio'"},
)
text_column_name: str = field(
default="text",
metadata={"help": "The name of the dataset column containing the text data. Defaults to 'text'"},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached preprocessed datasets or not."}
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of validation examples to this "
"value if set."
)
},
)
shuffle_buffer_size: Optional[int] = field(
default=500,
metadata={
"help": (
"The number of streamed examples to download before shuffling them. The large the buffer, "
"the closer it is to real offline shuffling."
)
},
)
chars_to_ignore: Optional[List[str]] = list_field(
default=None,
metadata={"help": "A list of characters to remove from the transcripts."},
)
eval_metrics: List[str] = list_field(
default=["wer"],
metadata={"help": "A list of metrics the model should be evaluated on. E.g. `'wer cer'`"},
)
max_duration_in_seconds: float = field(
default=20.0,
metadata={"help": "Filter audio files that are longer than `max_duration_in_seconds` seconds."},
)
preprocessing_only: bool = field(
default=False,
metadata={
"help": (
"Whether to only do data preprocessing and skip training. This is especially useful when data"
" preprocessing errors out in distributed training due to timeout. In this case, one should run the"
" preprocessing in a non-distributed setup with `preprocessing_only=True` so that the cached datasets"
" can consequently be loaded in distributed training"
)
},
)
use_auth_token: bool = field(
default=False,
metadata={
"help": (
"If :obj:`True`, will use the token generated when running"
":obj:`huggingface-cli login` as HTTP bearer authorization for remote files."
)
},
)
phoneme_language: Optional[str] = field(
default=None,
metadata={
"help": (
"The target language that should be used be"
" passed to the tokenizer for tokenization. Note that"
" this is only relevant if the model classifies the"
" input audio to a sequence of phoneme sequences."
)
},
)
@dataclass
class DataCollatorCTCWithPadding:
"""
Data collator that will dynamically pad the inputs received.
Args:
processor (:class:`~transformers.AutoProcessor`)
The processor used for proccessing the data.
padding (:obj:`bool`, :obj:`str` or :class:`~transformers.tokenization_utils_base.PaddingStrategy`, `optional`, defaults to :obj:`True`):
Select a strategy to pad the returned sequences (according to the model's padding side and padding index)
among:
* :obj:`True` or :obj:`'longest'`: Pad to the longest sequence in the batch (or no padding if only a single
sequence if provided).
* :obj:`'max_length'`: Pad to a maximum length specified with the argument :obj:`max_length` or to the
maximum acceptable input length for the model if that argument is not provided.
* :obj:`False` or :obj:`'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of
different lengths).
max_length (:obj:`int`, `optional`):
Maximum length of the ``input_values`` of the returned list and optionally padding length (see above).
max_length_labels (:obj:`int`, `optional`):
Maximum length of the ``labels`` returned list and optionally padding length (see above).
pad_to_multiple_of (:obj:`int`, `optional`):
If set will pad the sequence to a multiple of the provided value.
This is especially useful to enable the use of Tensor Cores on NVIDIA hardware with compute capability >=
7.5 (Volta).
"""
processor: AutoProcessor
padding: Union[bool, str] = "longest"
max_length: Optional[int] = None
pad_to_multiple_of: Optional[int] = None
pad_to_multiple_of_labels: Optional[int] = None
def __call__(self, features: List[Dict[str, Union[List[int], torch.Tensor]]]) -> Dict[str, torch.Tensor]:
# split inputs and labels since they have to be of different lengths and need
# different padding methods
input_features = []
label_features = []
for feature in features:
if self.max_length and feature["input_values"].shape[-1] > self.max_length:
continue
input_features.append({"input_values": feature["input_values"]})
label_features.append({"input_ids": feature["labels"]})
batch = self.processor.pad(
input_features,
padding=self.padding,
pad_to_multiple_of=self.pad_to_multiple_of,
return_tensors="pt",
)
labels_batch = self.processor.pad(
labels=label_features,
padding=self.padding,
pad_to_multiple_of=self.pad_to_multiple_of_labels,
return_tensors="pt",
)
# replace padding with -100 to ignore loss correctly
labels = labels_batch["input_ids"].masked_fill(labels_batch.attention_mask.ne(1), -100)
batch["labels"] = labels
return batch
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
# Detecting last checkpoint.
last_checkpoint = None
if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
last_checkpoint = get_last_checkpoint(training_args.output_dir)
if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. "
"Use --overwrite_output_dir to overcome."
)
elif last_checkpoint is not None:
logger.info(
f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
"the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
logger.setLevel(logging.INFO if is_main_process(training_args.local_rank) else logging.WARN)
# Log on each process the small summary:
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}, "
f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
transformers.utils.logging.set_verbosity_info()
logger.info("Training/evaluation parameters %s", training_args)
# Set seed before initializing model.
set_seed(training_args.seed)
# 1. First, let's load the dataset
raw_datasets = IterableDatasetDict()
raw_column_names = {}
def load_streaming_dataset(split, sampling_rate, **kwargs):
if "+" in split:
dataset_splits = [load_dataset(split=split_name, **kwargs) for split_name in split.split("+")]
# `features` and `cast_column` won't be available after interleaving, so we'll use them here
features = dataset_splits[0].features
# make sure that the dataset decodes audio with a correct sampling rate
dataset_splits = [
dataset.cast_column(data_args.audio_column_name, datasets.features.Audio(sampling_rate=sampling_rate))
for dataset in dataset_splits
]
interleaved_dataset = interleave_datasets(dataset_splits)
return interleaved_dataset, features
else:
dataset = load_dataset(split=split, **kwargs)
features = dataset.features
# make sure that the dataset decodes audio with a correct sampling rate
dataset = dataset.cast_column(
data_args.audio_column_name, datasets.features.Audio(sampling_rate=sampling_rate)
)
return dataset, features
# `datasets` takes care of automatically loading and resampling the audio,
# so we just need to set the correct target sampling rate and normalize the input
# via the `feature_extractor`
feature_extractor = AutoFeatureExtractor.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, token=data_args.use_auth_token
)
if training_args.do_train:
raw_datasets["train"], train_features = load_streaming_dataset(
path=data_args.dataset_name,
name=data_args.dataset_config_name,
split=data_args.train_split_name,
token=data_args.use_auth_token,
streaming=True,
sampling_rate=feature_extractor.sampling_rate,
)
raw_column_names["train"] = list(train_features.keys())
if data_args.audio_column_name not in raw_column_names["train"]:
raise ValueError(
f"--audio_column_name '{data_args.audio_column_name}' not found in dataset '{data_args.dataset_name}'."
" Make sure to set `--audio_column_name` to the correct audio column - one of"
f" {', '.join(raw_column_names['train'])}."
)
if data_args.text_column_name not in raw_column_names["train"]:
raise ValueError(
f"--text_column_name {data_args.text_column_name} not found in dataset '{data_args.dataset_name}'. "
"Make sure to set `--text_column_name` to the correct text column - one of "
f"{', '.join(raw_column_names['train'])}."
)
if data_args.max_train_samples is not None:
raw_datasets["train"] = raw_datasets["train"].take(range(data_args.max_train_samples))
if training_args.do_eval:
raw_datasets["eval"], eval_features = load_streaming_dataset(
path=data_args.dataset_name,
name=data_args.dataset_config_name,
split=data_args.eval_split_name,
token=data_args.use_auth_token,
streaming=True,
sampling_rate=feature_extractor.sampling_rate,
)
raw_column_names["eval"] = list(eval_features.keys())
if data_args.max_eval_samples is not None:
raw_datasets["eval"] = raw_datasets["eval"].take(range(data_args.max_eval_samples))
# 2. We remove some special characters from the datasets
# that make training complicated and do not help in transcribing the speech
# E.g. characters, such as `,` and `.` do not really have an acoustic characteristic
# that could be easily picked up by the model
chars_to_ignore_regex = (
f'[{"".join(data_args.chars_to_ignore)}]' if data_args.chars_to_ignore is not None else None
)
text_column_name = data_args.text_column_name
def remove_special_characters(batch):
if chars_to_ignore_regex is not None:
batch["target_text"] = re.sub(chars_to_ignore_regex, "", batch[text_column_name]).lower() + " "
else:
batch["target_text"] = batch[text_column_name].lower() + " "
return batch
with training_args.main_process_first(desc="dataset map special characters removal"):
for split, dataset in raw_datasets.items():
raw_datasets[split] = dataset.map(
remove_special_characters,
).remove_columns([text_column_name])
# 3. Next, let's load the config as we might need it to create
# the tokenizer
config = AutoConfig.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, token=data_args.use_auth_token
)
# 4. Now we can instantiate the tokenizer and model
# Note for distributed training, the .from_pretrained methods guarantee that only
# one local process can concurrently download model & vocab.
tokenizer_name_or_path = model_args.tokenizer_name_or_path
if tokenizer_name_or_path is None:
raise ValueError(
"Tokenizer has to be created before training in streaming mode. Please specify --tokenizer_name_or_path"
)
# load feature_extractor and tokenizer
tokenizer = AutoTokenizer.from_pretrained(
tokenizer_name_or_path,
config=config,
token=data_args.use_auth_token,
)
# adapt config
config.update(
{
"feat_proj_dropout": model_args.feat_proj_dropout,
"attention_dropout": model_args.attention_dropout,
"hidden_dropout": model_args.hidden_dropout,
"final_dropout": model_args.final_dropout,
"mask_time_prob": model_args.mask_time_prob,
"mask_time_length": model_args.mask_time_length,
"mask_feature_prob": model_args.mask_feature_prob,
"mask_feature_length": model_args.mask_feature_length,
"gradient_checkpointing": training_args.gradient_checkpointing,
"layerdrop": model_args.layerdrop,
"ctc_loss_reduction": model_args.ctc_loss_reduction,
"pad_token_id": tokenizer.pad_token_id,
"vocab_size": len(tokenizer),
"activation_dropout": model_args.activation_dropout,
}
)
# create model
model = AutoModelForCTC.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
config=config,
token=data_args.use_auth_token,
)
# freeze encoder
if model_args.freeze_feature_encoder:
model.freeze_feature_encoder()
# 5. Now we preprocess the datasets including loading the audio, resampling and normalization
audio_column_name = data_args.audio_column_name
# `phoneme_language` is only relevant if the model is fine-tuned on phoneme classification
phoneme_language = data_args.phoneme_language
# Preprocessing the datasets.
# We need to read the audio files as arrays and tokenize the targets.
def prepare_dataset(batch):
# load audio
sample = batch[audio_column_name]
inputs = feature_extractor(sample["array"], sampling_rate=sample["sampling_rate"])
batch["input_values"] = inputs.input_values[0]
batch["input_length"] = len(batch["input_values"])
# encode targets
additional_kwargs = {}
if phoneme_language is not None:
additional_kwargs["phonemizer_lang"] = phoneme_language
batch["labels"] = tokenizer(batch["target_text"], **additional_kwargs).input_ids
return batch
vectorized_datasets = IterableDatasetDict()
with training_args.main_process_first(desc="dataset map preprocessing"):
for split, dataset in raw_datasets.items():
vectorized_datasets[split] = (
dataset.map(prepare_dataset)
.remove_columns(raw_column_names[split] + ["target_text"])
.with_format("torch")
)
if split == "train":
vectorized_datasets[split] = vectorized_datasets[split].shuffle(
buffer_size=data_args.shuffle_buffer_size,
seed=training_args.seed,
)
# 6. Next, we can prepare the training.
# Let's use word error rate (WER) as our evaluation metric,
# instantiate a data collator and the trainer
# Define evaluation metrics during training, *i.e.* word error rate, character error rate
eval_metrics = {metric: load_metric(metric) for metric in data_args.eval_metrics}
def compute_metrics(pred):
pred_logits = pred.predictions
pred_ids = np.argmax(pred_logits, axis=-1)
pred.label_ids[pred.label_ids == -100] = tokenizer.pad_token_id
pred_str = tokenizer.batch_decode(pred_ids)
# we do not want to group tokens when computing the metrics
label_str = tokenizer.batch_decode(pred.label_ids, group_tokens=False)
metrics = {k: v.compute(predictions=pred_str, references=label_str) for k, v in eval_metrics.items()}
return metrics
# Now save everything to be able to create a single processor later
if is_main_process(training_args.local_rank):
# save feature extractor, tokenizer and config
feature_extractor.save_pretrained(training_args.output_dir)
tokenizer.save_pretrained(training_args.output_dir)
config.save_pretrained(training_args.output_dir)
try:
processor = AutoProcessor.from_pretrained(training_args.output_dir)
except (OSError, KeyError):
warnings.warn(
"Loading a processor from a feature extractor config that does not"
" include a `processor_class` attribute is deprecated and will be removed in v5. Please add the following "
" attribute to your `preprocessor_config.json` file to suppress this warning: "
" `'processor_class': 'Wav2Vec2Processor'`",
FutureWarning,
)
processor = Wav2Vec2Processor.from_pretrained(training_args.output_dir)
# Instantiate custom data collator
max_input_length = data_args.max_duration_in_seconds * feature_extractor.sampling_rate
data_collator = DataCollatorCTCWithPadding(processor=processor, max_length=max_input_length)
# trainer callback to reinitialize and reshuffle the streamable datasets at the beginning of each epoch
class ShuffleCallback(TrainerCallback):
def on_epoch_begin(self, args, state, control, train_dataloader, **kwargs):
if isinstance(train_dataloader.dataset, IterableDatasetShard):
pass # set_epoch() is handled by the Trainer
elif isinstance(train_dataloader.dataset, IterableDataset):
train_dataloader.dataset.set_epoch(train_dataloader.dataset._epoch + 1)
# Initialize Trainer
trainer = Trainer(
model=model,
data_collator=data_collator,
args=training_args,
compute_metrics=compute_metrics,
train_dataset=vectorized_datasets["train"] if training_args.do_train else None,
eval_dataset=vectorized_datasets["eval"] if training_args.do_eval else None,
tokenizer=processor,
callbacks=[ShuffleCallback()],
)
# 7. Finally, we can start training
# Training
if training_args.do_train:
# use last checkpoint if exist
if last_checkpoint is not None:
checkpoint = last_checkpoint
elif os.path.isdir(model_args.model_name_or_path):
checkpoint = model_args.model_name_or_path
else:
checkpoint = None
train_result = trainer.train(resume_from_checkpoint=checkpoint)
trainer.save_model()
metrics = train_result.metrics
if data_args.max_train_samples:
metrics["train_samples"] = data_args.max_train_samples
trainer.log_metrics("train", metrics)
trainer.save_metrics("train", metrics)
trainer.save_state()
# Evaluation
results = {}
if training_args.do_eval:
logger.info("*** Evaluate ***")
metrics = trainer.evaluate()
if data_args.max_eval_samples:
metrics["eval_samples"] = data_args.max_eval_samples
trainer.log_metrics("eval", metrics)
trainer.save_metrics("eval", metrics)
# Write model card and (optionally) push to hub
config_name = data_args.dataset_config_name if data_args.dataset_config_name is not None else "na"
kwargs = {
"finetuned_from": model_args.model_name_or_path,
"tasks": "automatic-speech-recognition",
"tags": ["automatic-speech-recognition", data_args.dataset_name],
"dataset_args": (
f"Config: {config_name}, Training split: {data_args.train_split_name}, Eval split:"
f" {data_args.eval_split_name}"
),
"dataset": f"{data_args.dataset_name.upper()} - {config_name.upper()}",
}
if "common_voice" in data_args.dataset_name:
kwargs["language"] = config_name
if training_args.push_to_hub:
trainer.push_to_hub(**kwargs)
else:
trainer.create_model_card(**kwargs)
return results
if __name__ == "__main__":
main()
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hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/robust-speech-event/eval.py
|
#!/usr/bin/env python3
import argparse
import re
from typing import Dict
import torch
from datasets import Audio, Dataset, load_dataset, load_metric
from transformers import AutoFeatureExtractor, pipeline
def log_results(result: Dataset, args: Dict[str, str]):
"""DO NOT CHANGE. This function computes and logs the result metrics."""
log_outputs = args.log_outputs
dataset_id = "_".join(args.dataset.split("/") + [args.config, args.split])
# load metric
wer = load_metric("wer")
cer = load_metric("cer")
# compute metrics
wer_result = wer.compute(references=result["target"], predictions=result["prediction"])
cer_result = cer.compute(references=result["target"], predictions=result["prediction"])
# print & log results
result_str = f"WER: {wer_result}\nCER: {cer_result}"
print(result_str)
with open(f"{dataset_id}_eval_results.txt", "w") as f:
f.write(result_str)
# log all results in text file. Possibly interesting for analysis
if log_outputs is not None:
pred_file = f"log_{dataset_id}_predictions.txt"
target_file = f"log_{dataset_id}_targets.txt"
with open(pred_file, "w") as p, open(target_file, "w") as t:
# mapping function to write output
def write_to_file(batch, i):
p.write(f"{i}" + "\n")
p.write(batch["prediction"] + "\n")
t.write(f"{i}" + "\n")
t.write(batch["target"] + "\n")
result.map(write_to_file, with_indices=True)
def normalize_text(text: str) -> str:
"""DO ADAPT FOR YOUR USE CASE. this function normalizes the target text."""
chars_to_ignore_regex = '[,?.!\-\;\:"“%‘”�—’…–]' # noqa: W605 IMPORTANT: this should correspond to the chars that were ignored during training
text = re.sub(chars_to_ignore_regex, "", text.lower())
# In addition, we can normalize the target text, e.g. removing new lines characters etc...
# note that order is important here!
token_sequences_to_ignore = ["\n\n", "\n", " ", " "]
for t in token_sequences_to_ignore:
text = " ".join(text.split(t))
return text
def main(args):
# load dataset
dataset = load_dataset(args.dataset, args.config, split=args.split, token=True)
# for testing: only process the first two examples as a test
# dataset = dataset.select(range(10))
# load processor
feature_extractor = AutoFeatureExtractor.from_pretrained(args.model_id)
sampling_rate = feature_extractor.sampling_rate
# resample audio
dataset = dataset.cast_column("audio", Audio(sampling_rate=sampling_rate))
# load eval pipeline
if args.device is None:
args.device = 0 if torch.cuda.is_available() else -1
asr = pipeline("automatic-speech-recognition", model=args.model_id, device=args.device)
# map function to decode audio
def map_to_pred(batch):
prediction = asr(
batch["audio"]["array"], chunk_length_s=args.chunk_length_s, stride_length_s=args.stride_length_s
)
batch["prediction"] = prediction["text"]
batch["target"] = normalize_text(batch["sentence"])
return batch
# run inference on all examples
result = dataset.map(map_to_pred, remove_columns=dataset.column_names)
# compute and log_results
# do not change function below
log_results(result, args)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--model_id", type=str, required=True, help="Model identifier. Should be loadable with 🤗 Transformers"
)
parser.add_argument(
"--dataset",
type=str,
required=True,
help="Dataset name to evaluate the `model_id`. Should be loadable with 🤗 Datasets",
)
parser.add_argument(
"--config", type=str, required=True, help="Config of the dataset. *E.g.* `'en'` for Common Voice"
)
parser.add_argument("--split", type=str, required=True, help="Split of the dataset. *E.g.* `'test'`")
parser.add_argument(
"--chunk_length_s", type=float, default=None, help="Chunk length in seconds. Defaults to 5 seconds."
)
parser.add_argument(
"--stride_length_s", type=float, default=None, help="Stride of the audio chunks. Defaults to 1 second."
)
parser.add_argument(
"--log_outputs", action="store_true", help="If defined, write outputs to log file for analysis."
)
parser.add_argument(
"--device",
type=int,
default=None,
help="The device to run the pipeline on. -1 for CPU (default), 0 for the first GPU and so on.",
)
args = parser.parse_args()
main(args)
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/layoutlmv3/README.md
|
<!---
Copyright 2022 The HuggingFace Team. All rights reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
-->
# Token classification with LayoutLMv3 (PyTorch version)
This directory contains a script, `run_funsd_cord.py`, that can be used to fine-tune (or evaluate) LayoutLMv3 on form understanding datasets, such as [FUNSD](https://guillaumejaume.github.io/FUNSD/) and [CORD](https://github.com/clovaai/cord).
The script `run_funsd_cord.py` leverages the 🤗 Datasets library and the Trainer API. You can easily customize it to your needs.
## Fine-tuning on FUNSD
Fine-tuning LayoutLMv3 for token classification on [FUNSD](https://guillaumejaume.github.io/FUNSD/) can be done as follows:
```bash
python run_funsd_cord.py \
--model_name_or_path microsoft/layoutlmv3-base \
--dataset_name funsd \
--output_dir layoutlmv3-test \
--do_train \
--do_eval \
--max_steps 1000 \
--evaluation_strategy steps \
--eval_steps 100 \
--learning_rate 1e-5 \
--load_best_model_at_end \
--metric_for_best_model "eval_f1" \
--push_to_hub \
--push_to_hub°model_id layoutlmv3-finetuned-funsd
```
👀 The resulting model can be found here: https://huggingface.co/nielsr/layoutlmv3-finetuned-funsd. By specifying the `push_to_hub` flag, the model gets uploaded automatically to the hub (regularly), together with a model card, which includes metrics such as precision, recall and F1. Note that you can easily update the model card, as it's just a README file of the respective repo on the hub.
There's also the "Training metrics" [tab](https://huggingface.co/nielsr/layoutlmv3-finetuned-funsd/tensorboard), which shows Tensorboard logs over the course of training. Pretty neat, huh?
## Fine-tuning on CORD
Fine-tuning LayoutLMv3 for token classification on [CORD](https://github.com/clovaai/cord) can be done as follows:
```bash
python run_funsd_cord.py \
--model_name_or_path microsoft/layoutlmv3-base \
--dataset_name cord \
--output_dir layoutlmv3-test \
--do_train \
--do_eval \
--max_steps 1000 \
--evaluation_strategy steps \
--eval_steps 100 \
--learning_rate 5e-5 \
--load_best_model_at_end \
--metric_for_best_model "eval_f1" \
--push_to_hub \
--push_to_hub°model_id layoutlmv3-finetuned-cord
```
👀 The resulting model can be found here: https://huggingface.co/nielsr/layoutlmv3-finetuned-cord. Note that a model card gets generated automatically in case you specify the `push_to_hub` flag.
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/layoutlmv3/requirements.txt
|
datasets
seqeval
pillow
| 0 |
hf_public_repos/transformers/examples/research_projects
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hf_public_repos/transformers/examples/research_projects/layoutlmv3/run_funsd_cord.py
|
#!/usr/bin/env python
# coding=utf-8
# Copyright 2022 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning LayoutLMv3 for token classification on FUNSD or CORD.
"""
# You can also adapt this script on your own token classification task and datasets. Pointers for this are left as
# comments.
import logging
import os
import sys
from dataclasses import dataclass, field
from typing import Optional
import datasets
import numpy as np
from datasets import ClassLabel, load_dataset, load_metric
import transformers
from transformers import (
AutoConfig,
AutoModelForTokenClassification,
AutoProcessor,
HfArgumentParser,
Trainer,
TrainingArguments,
set_seed,
)
from transformers.data.data_collator import default_data_collator
from transformers.trainer_utils import get_last_checkpoint
from transformers.utils import check_min_version
from transformers.utils.versions import require_version
# Will error if the minimal version of Transformers is not installed. Remove at your own risks.
check_min_version("4.19.0.dev0")
require_version("datasets>=1.8.0", "To fix: pip install -r examples/pytorch/token-classification/requirements.txt")
logger = logging.getLogger(__name__)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
default="microsoft/layoutlmv3-base",
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"},
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
processor_name: Optional[str] = field(
default=None, metadata={"help": "Name or path to the processor files if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
model_revision: str = field(
default="main",
metadata={"help": "The specific model version to use (can be a branch name, tag name or commit id)."},
)
use_auth_token: bool = field(
default=False,
metadata={
"help": (
"Will use the token generated when running `huggingface-cli login` (necessary to use this script "
"with private models)."
)
},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
task_name: Optional[str] = field(default="ner", metadata={"help": "The name of the task (ner, pos...)."})
dataset_name: Optional[str] = field(
default="nielsr/funsd-layoutlmv3",
metadata={"help": "The name of the dataset to use (via the datasets library)."},
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_file: Optional[str] = field(
default=None, metadata={"help": "The input training data file (a csv or JSON file)."}
)
validation_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input evaluation data file to evaluate on (a csv or JSON file)."},
)
test_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input test data file to predict on (a csv or JSON file)."},
)
text_column_name: Optional[str] = field(
default=None, metadata={"help": "The column name of text to input in the file (a csv or JSON file)."}
)
label_column_name: Optional[str] = field(
default=None, metadata={"help": "The column name of label to input in the file (a csv or JSON file)."}
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
max_seq_length: int = field(
default=512,
metadata={
"help": (
"The maximum total input sequence length after tokenization. If set, sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of evaluation examples to this "
"value if set."
)
},
)
max_predict_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of prediction examples to this "
"value if set."
)
},
)
label_all_tokens: bool = field(
default=False,
metadata={
"help": (
"Whether to put the label for one word on all tokens of generated by that word or just on the "
"one (in which case the other tokens will have a padding index)."
)
},
)
return_entity_level_metrics: bool = field(
default=False,
metadata={"help": "Whether to return all the entity levels during evaluation or just the overall ones."},
)
def __post_init__(self):
if self.dataset_name is None and self.train_file is None and self.validation_file is None:
raise ValueError("Need either a dataset name or a training/validation file.")
else:
if self.train_file is not None:
extension = self.train_file.split(".")[-1]
assert extension in ["csv", "json"], "`train_file` should be a csv or a json file."
if self.validation_file is not None:
extension = self.validation_file.split(".")[-1]
assert extension in ["csv", "json"], "`validation_file` should be a csv or a json file."
self.task_name = self.task_name.lower()
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
log_level = training_args.get_process_log_level()
logger.setLevel(log_level)
datasets.utils.logging.set_verbosity(log_level)
transformers.utils.logging.set_verbosity(log_level)
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
# Log on each process the small summary:
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}"
+ f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
logger.info(f"Training/evaluation parameters {training_args}")
# Detecting last checkpoint.
last_checkpoint = None
if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
last_checkpoint = get_last_checkpoint(training_args.output_dir)
if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. "
"Use --overwrite_output_dir to overcome."
)
elif last_checkpoint is not None and training_args.resume_from_checkpoint is None:
logger.info(
f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
"the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
)
# Set seed before initializing model.
set_seed(training_args.seed)
# Get the datasets
# In distributed training, the load_dataset function guarantee that only one local process can concurrently
# download the dataset.
if data_args.dataset_name == "funsd":
# Downloading and loading a dataset from the hub.
dataset = load_dataset(
"nielsr/funsd-layoutlmv3",
data_args.dataset_config_name,
cache_dir=model_args.cache_dir,
token=True if model_args.use_auth_token else None,
)
elif data_args.dataset_name == "cord":
# Downloading and loading a dataset from the hub.
dataset = load_dataset(
"nielsr/cord-layoutlmv3",
data_args.dataset_config_name,
cache_dir=model_args.cache_dir,
token=True if model_args.use_auth_token else None,
)
else:
raise ValueError("This script only supports either FUNSD or CORD out-of-the-box.")
if training_args.do_train:
column_names = dataset["train"].column_names
features = dataset["train"].features
else:
column_names = dataset["test"].column_names
features = dataset["test"].features
image_column_name = "image"
text_column_name = "words" if "words" in column_names else "tokens"
boxes_column_name = "bboxes"
label_column_name = (
f"{data_args.task_name}_tags" if f"{data_args.task_name}_tags" in column_names else column_names[1]
)
remove_columns = column_names
# In the event the labels are not a `Sequence[ClassLabel]`, we will need to go through the dataset to get the
# unique labels.
def get_label_list(labels):
unique_labels = set()
for label in labels:
unique_labels = unique_labels | set(label)
label_list = list(unique_labels)
label_list.sort()
return label_list
# If the labels are of type ClassLabel, they are already integers and we have the map stored somewhere.
# Otherwise, we have to get the list of labels manually.
if isinstance(features[label_column_name].feature, ClassLabel):
label_list = features[label_column_name].feature.names
# No need to convert the labels since they are already ints.
id2label = dict(enumerate(label_list))
label2id = {v: k for k, v in enumerate(label_list)}
else:
label_list = get_label_list(datasets["train"][label_column_name])
id2label = dict(enumerate(label_list))
label2id = {v: k for k, v in enumerate(label_list)}
num_labels = len(label_list)
# Load pretrained model and processor
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
config = AutoConfig.from_pretrained(
model_args.config_name if model_args.config_name else model_args.model_name_or_path,
num_labels=num_labels,
finetuning_task=data_args.task_name,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
token=True if model_args.use_auth_token else None,
)
processor = AutoProcessor.from_pretrained(
model_args.processor_name if model_args.processor_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
use_fast=True,
revision=model_args.model_revision,
token=True if model_args.use_auth_token else None,
add_prefix_space=True,
apply_ocr=False,
)
model = AutoModelForTokenClassification.from_pretrained(
model_args.model_name_or_path,
from_tf=bool(".ckpt" in model_args.model_name_or_path),
config=config,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
token=True if model_args.use_auth_token else None,
)
# Set the correspondences label/ID inside the model config
model.config.label2id = label2id
model.config.id2label = id2label
# Preprocessing the dataset
# The processor does everything for us (prepare the image using LayoutLMv3ImageProcessor
# and prepare the words, boxes and word-level labels using LayoutLMv3TokenizerFast)
def prepare_examples(examples):
images = examples[image_column_name]
words = examples[text_column_name]
boxes = examples[boxes_column_name]
word_labels = examples[label_column_name]
encoding = processor(
images,
words,
boxes=boxes,
word_labels=word_labels,
truncation=True,
padding="max_length",
max_length=data_args.max_seq_length,
)
return encoding
if training_args.do_train:
if "train" not in dataset:
raise ValueError("--do_train requires a train dataset")
train_dataset = dataset["train"]
if data_args.max_train_samples is not None:
train_dataset = train_dataset.select(range(data_args.max_train_samples))
with training_args.main_process_first(desc="train dataset map pre-processing"):
train_dataset = train_dataset.map(
prepare_examples,
batched=True,
remove_columns=remove_columns,
num_proc=data_args.preprocessing_num_workers,
load_from_cache_file=not data_args.overwrite_cache,
)
if training_args.do_eval:
validation_name = "test"
if validation_name not in dataset:
raise ValueError("--do_eval requires a validation dataset")
eval_dataset = dataset[validation_name]
if data_args.max_eval_samples is not None:
eval_dataset = eval_dataset.select(range(data_args.max_eval_samples))
with training_args.main_process_first(desc="validation dataset map pre-processing"):
eval_dataset = eval_dataset.map(
prepare_examples,
batched=True,
remove_columns=remove_columns,
num_proc=data_args.preprocessing_num_workers,
load_from_cache_file=not data_args.overwrite_cache,
)
if training_args.do_predict:
if "test" not in datasets:
raise ValueError("--do_predict requires a test dataset")
predict_dataset = datasets["test"]
if data_args.max_predict_samples is not None:
max_predict_samples = min(len(predict_dataset), data_args.max_predict_samples)
predict_dataset = predict_dataset.select(range(max_predict_samples))
with training_args.main_process_first(desc="prediction dataset map pre-processing"):
predict_dataset = predict_dataset.map(
prepare_examples,
batched=True,
remove_columns=remove_columns,
num_proc=data_args.preprocessing_num_workers,
load_from_cache_file=not data_args.overwrite_cache,
)
# Metrics
metric = load_metric("seqeval")
def compute_metrics(p):
predictions, labels = p
predictions = np.argmax(predictions, axis=2)
# Remove ignored index (special tokens)
true_predictions = [
[label_list[p] for (p, l) in zip(prediction, label) if l != -100]
for prediction, label in zip(predictions, labels)
]
true_labels = [
[label_list[l] for (p, l) in zip(prediction, label) if l != -100]
for prediction, label in zip(predictions, labels)
]
results = metric.compute(predictions=true_predictions, references=true_labels)
if data_args.return_entity_level_metrics:
# Unpack nested dictionaries
final_results = {}
for key, value in results.items():
if isinstance(value, dict):
for n, v in value.items():
final_results[f"{key}_{n}"] = v
else:
final_results[key] = value
return final_results
else:
return {
"precision": results["overall_precision"],
"recall": results["overall_recall"],
"f1": results["overall_f1"],
"accuracy": results["overall_accuracy"],
}
# Initialize our Trainer
trainer = Trainer(
model=model,
args=training_args,
train_dataset=train_dataset if training_args.do_train else None,
eval_dataset=eval_dataset if training_args.do_eval else None,
tokenizer=processor,
data_collator=default_data_collator,
compute_metrics=compute_metrics,
)
# Training
if training_args.do_train:
checkpoint = None
if training_args.resume_from_checkpoint is not None:
checkpoint = training_args.resume_from_checkpoint
elif last_checkpoint is not None:
checkpoint = last_checkpoint
train_result = trainer.train(resume_from_checkpoint=checkpoint)
metrics = train_result.metrics
trainer.save_model() # Saves the tokenizer too for easy upload
max_train_samples = (
data_args.max_train_samples if data_args.max_train_samples is not None else len(train_dataset)
)
metrics["train_samples"] = min(max_train_samples, len(train_dataset))
trainer.log_metrics("train", metrics)
trainer.save_metrics("train", metrics)
trainer.save_state()
# Evaluation
if training_args.do_eval:
logger.info("*** Evaluate ***")
metrics = trainer.evaluate()
max_eval_samples = data_args.max_eval_samples if data_args.max_eval_samples is not None else len(eval_dataset)
metrics["eval_samples"] = min(max_eval_samples, len(eval_dataset))
trainer.log_metrics("eval", metrics)
trainer.save_metrics("eval", metrics)
# Predict
if training_args.do_predict:
logger.info("*** Predict ***")
predictions, labels, metrics = trainer.predict(predict_dataset, metric_key_prefix="predict")
predictions = np.argmax(predictions, axis=2)
# Remove ignored index (special tokens)
true_predictions = [
[label_list[p] for (p, l) in zip(prediction, label) if l != -100]
for prediction, label in zip(predictions, labels)
]
trainer.log_metrics("predict", metrics)
trainer.save_metrics("predict", metrics)
# Save predictions
output_predictions_file = os.path.join(training_args.output_dir, "predictions.txt")
if trainer.is_world_process_zero():
with open(output_predictions_file, "w") as writer:
for prediction in true_predictions:
writer.write(" ".join(prediction) + "\n")
kwargs = {"finetuned_from": model_args.model_name_or_path, "tasks": "token-classification"}
if data_args.dataset_name is not None:
kwargs["dataset_tags"] = data_args.dataset_name
if data_args.dataset_config_name is not None:
kwargs["dataset_args"] = data_args.dataset_config_name
kwargs["dataset"] = f"{data_args.dataset_name} {data_args.dataset_config_name}"
else:
kwargs["dataset"] = data_args.dataset_name
if training_args.push_to_hub:
trainer.push_to_hub(**kwargs)
else:
trainer.create_model_card(**kwargs)
def _mp_fn(index):
# For xla_spawn (TPUs)
main()
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/bert-loses-patience/README.md
|
# Patience-based Early Exit
Patience-based Early Exit (PABEE) is a plug-and-play inference method for pretrained language models.
We have already implemented it on BERT and ALBERT. Basically, you can make your LM faster and more robust with PABEE. It can even improve the performance of ALBERT on GLUE. The only sacrifice is that the batch size can only be 1.
Learn more in the paper ["BERT Loses Patience: Fast and Robust Inference with Early Exit"](https://arxiv.org/abs/2006.04152) and the official [GitHub repo](https://github.com/JetRunner/PABEE).
## Training
You can fine-tune a pretrained language model (you can choose from BERT and ALBERT) and train the internal classifiers by:
```bash
export GLUE_DIR=/path/to/glue_data
export TASK_NAME=MRPC
python ./run_glue_with_pabee.py \
--model_type albert \
--model_name_or_path bert-base-uncased/albert-base-v2 \
--task_name $TASK_NAME \
--do_train \
--do_eval \
--do_lower_case \
--data_dir "$GLUE_DIR/$TASK_NAME" \
--max_seq_length 128 \
--per_gpu_train_batch_size 32 \
--per_gpu_eval_batch_size 32 \
--learning_rate 2e-5 \
--save_steps 50 \
--logging_steps 50 \
--num_train_epochs 5 \
--output_dir /path/to/save/ \
--evaluate_during_training
```
## Inference
You can inference with different patience settings by:
```bash
export GLUE_DIR=/path/to/glue_data
export TASK_NAME=MRPC
python ./run_glue_with_pabee.py \
--model_type albert \
--model_name_or_path /path/to/save/ \
--task_name $TASK_NAME \
--do_eval \
--do_lower_case \
--data_dir "$GLUE_DIR/$TASK_NAME" \
--max_seq_length 128 \
--per_gpu_eval_batch_size 1 \
--learning_rate 2e-5 \
--logging_steps 50 \
--num_train_epochs 15 \
--output_dir /path/to/save/ \
--eval_all_checkpoints \
--patience 3,4,5,6,7,8
```
where `patience` can be a list of patience settings, separated by a comma. It will help determine which patience works best.
When evaluating on a regression task (STS-B), you may add `--regression_threshold 0.1` to define the regression threshold.
## Results
On the GLUE dev set:
| Model | \#Param | Speed | CoLA | MNLI | MRPC | QNLI | QQP | RTE | SST\-2 | STS\-B |
|--------------|---------|--------|-------|-------|-------|-------|-------|-------|--------|--------|
| ALBERT\-base | 12M | | 58\.9 | 84\.6 | 89\.5 | 91\.7 | 89\.6 | 78\.6 | 92\.8 | 89\.5 |
| \+PABEE | 12M | 1\.57x | 61\.2 | 85\.1 | 90\.0 | 91\.8 | 89\.6 | 80\.1 | 93\.0 | 90\.1 |
| Model | \#Param | Speed\-up | MNLI | SST\-2 | STS\-B |
|---------------|---------|-----------|-------|--------|--------|
| BERT\-base | 108M | | 84\.5 | 92\.1 | 88\.9 |
| \+PABEE | 108M | 1\.62x | 83\.6 | 92\.0 | 88\.7 |
| ALBERT\-large | 18M | | 86\.4 | 94\.9 | 90\.4 |
| \+PABEE | 18M | 2\.42x | 86\.8 | 95\.2 | 90\.6 |
## Citation
If you find this resource useful, please consider citing the following paper:
```bibtex
@misc{zhou2020bert,
title={BERT Loses Patience: Fast and Robust Inference with Early Exit},
author={Wangchunshu Zhou and Canwen Xu and Tao Ge and Julian McAuley and Ke Xu and Furu Wei},
year={2020},
eprint={2006.04152},
archivePrefix={arXiv},
primaryClass={cs.CL}
}
```
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/bert-loses-patience/requirements.txt
|
transformers == 3.5.1
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/bert-loses-patience/run_glue_with_pabee.py
|
# coding=utf-8
# Copyright 2020 The Google AI Language Team Authors, The HuggingFace Inc. team and Microsoft Corporation.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Training and inference using the library models for sequence classification on GLUE (Bert, Albert) with PABEE."""
import argparse
import glob
import json
import logging
import os
import random
import numpy as np
import torch
from pabee.modeling_pabee_albert import AlbertForSequenceClassificationWithPabee
from pabee.modeling_pabee_bert import BertForSequenceClassificationWithPabee
from torch import nn
from torch.utils.data import DataLoader, RandomSampler, SequentialSampler, TensorDataset
from torch.utils.data.distributed import DistributedSampler
from tqdm import tqdm, trange
import transformers
from transformers import (
WEIGHTS_NAME,
AdamW,
AlbertConfig,
AlbertTokenizer,
BertConfig,
BertTokenizer,
get_linear_schedule_with_warmup,
)
from transformers import glue_compute_metrics as compute_metrics
from transformers import glue_convert_examples_to_features as convert_examples_to_features
from transformers import glue_output_modes as output_modes
from transformers import glue_processors as processors
from transformers.trainer_utils import is_main_process
try:
from torch.utils.tensorboard import SummaryWriter
except ImportError:
from tensorboardX import SummaryWriter
logger = logging.getLogger(__name__)
MODEL_CLASSES = {
"bert": (BertConfig, BertForSequenceClassificationWithPabee, BertTokenizer),
"albert": (AlbertConfig, AlbertForSequenceClassificationWithPabee, AlbertTokenizer),
}
def set_seed(args):
random.seed(args.seed)
np.random.seed(args.seed)
torch.manual_seed(args.seed)
if args.n_gpu > 0:
torch.cuda.manual_seed_all(args.seed)
def train(args, train_dataset, model, tokenizer):
"""Train the model"""
if args.local_rank in [-1, 0]:
tb_writer = SummaryWriter()
args.train_batch_size = args.per_gpu_train_batch_size * max(1, args.n_gpu)
train_sampler = RandomSampler(train_dataset) if args.local_rank == -1 else DistributedSampler(train_dataset)
train_dataloader = DataLoader(train_dataset, sampler=train_sampler, batch_size=args.train_batch_size)
if args.max_steps > 0:
t_total = args.max_steps
args.num_train_epochs = args.max_steps // (len(train_dataloader) // args.gradient_accumulation_steps) + 1
else:
t_total = len(train_dataloader) // args.gradient_accumulation_steps * args.num_train_epochs
# Prepare optimizer and schedule (linear warmup and decay)
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if not any(nd in n for nd in no_decay)],
"weight_decay": args.weight_decay,
},
{"params": [p for n, p in model.named_parameters() if any(nd in n for nd in no_decay)], "weight_decay": 0.0},
]
optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate, eps=args.adam_epsilon)
scheduler = get_linear_schedule_with_warmup(
optimizer, num_warmup_steps=args.warmup_steps, num_training_steps=t_total
)
# Check if saved optimizer or scheduler states exist
if os.path.isfile(os.path.join(args.model_name_or_path, "optimizer.pt")) and os.path.isfile(
os.path.join(args.model_name_or_path, "scheduler.pt")
):
# Load in optimizer and scheduler states
optimizer.load_state_dict(torch.load(os.path.join(args.model_name_or_path, "optimizer.pt")))
scheduler.load_state_dict(torch.load(os.path.join(args.model_name_or_path, "scheduler.pt")))
if args.fp16:
try:
from apex import amp
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
model, optimizer = amp.initialize(model, optimizer, opt_level=args.fp16_opt_level)
# multi-gpu training (should be after apex fp16 initialization)
if args.n_gpu > 1:
model = nn.DataParallel(model)
# Distributed training (should be after apex fp16 initialization)
if args.local_rank != -1:
model = nn.parallel.DistributedDataParallel(
model,
device_ids=[args.local_rank],
output_device=args.local_rank,
find_unused_parameters=True,
)
# Train!
logger.info("***** Running training *****")
logger.info(" Num examples = %d", len(train_dataset))
logger.info(" Num Epochs = %d", args.num_train_epochs)
logger.info(" Instantaneous batch size per GPU = %d", args.per_gpu_train_batch_size)
logger.info(
" Total train batch size (w. parallel, distributed & accumulation) = %d",
args.train_batch_size
* args.gradient_accumulation_steps
* (torch.distributed.get_world_size() if args.local_rank != -1 else 1),
)
logger.info(" Gradient Accumulation steps = %d", args.gradient_accumulation_steps)
logger.info(" Total optimization steps = %d", t_total)
global_step = 0
epochs_trained = 0
steps_trained_in_current_epoch = 0
# Check if continuing training from a checkpoint
if os.path.exists(args.model_name_or_path):
# set global_step to gobal_step of last saved checkpoint from model path
global_step = int(args.model_name_or_path.split("-")[-1].split("/")[0])
epochs_trained = global_step // (len(train_dataloader) // args.gradient_accumulation_steps)
steps_trained_in_current_epoch = global_step % (len(train_dataloader) // args.gradient_accumulation_steps)
logger.info(" Continuing training from checkpoint, will skip to saved global_step")
logger.info(" Continuing training from epoch %d", epochs_trained)
logger.info(" Continuing training from global step %d", global_step)
logger.info(
" Will skip the first %d steps in the first epoch",
steps_trained_in_current_epoch,
)
tr_loss, logging_loss = 0.0, 0.0
model.zero_grad()
train_iterator = trange(
epochs_trained,
int(args.num_train_epochs),
desc="Epoch",
disable=args.local_rank not in [-1, 0],
)
set_seed(args) # Added here for reproductibility
for _ in train_iterator:
epoch_iterator = tqdm(train_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])
for step, batch in enumerate(epoch_iterator):
# Skip past any already trained steps if resuming training
if steps_trained_in_current_epoch > 0:
steps_trained_in_current_epoch -= 1
continue
model.train()
batch = tuple(t.to(args.device) for t in batch)
inputs = {
"input_ids": batch[0],
"attention_mask": batch[1],
"labels": batch[3],
}
inputs["token_type_ids"] = batch[2]
outputs = model(**inputs)
loss = outputs[0] # model outputs are always tuple in transformers (see doc)
if args.n_gpu > 1:
loss = loss.mean() # mean() to average on multi-gpu parallel training
if args.gradient_accumulation_steps > 1:
loss = loss / args.gradient_accumulation_steps
if args.fp16:
with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
tr_loss += loss.item()
if (step + 1) % args.gradient_accumulation_steps == 0:
if args.fp16:
nn.utils.clip_grad_norm_(amp.master_params(optimizer), args.max_grad_norm)
else:
nn.utils.clip_grad_norm_(model.parameters(), args.max_grad_norm)
optimizer.step()
scheduler.step() # Update learning rate schedule
model.zero_grad()
global_step += 1
if args.local_rank in [-1, 0] and args.logging_steps > 0 and global_step % args.logging_steps == 0:
logs = {}
if (
args.local_rank == -1 and args.evaluate_during_training
): # Only evaluate when single GPU otherwise metrics may not average well
results = evaluate(args, model, tokenizer)
for key, value in results.items():
eval_key = "eval_{}".format(key)
logs[eval_key] = value
loss_scalar = (tr_loss - logging_loss) / args.logging_steps
learning_rate_scalar = scheduler.get_lr()[0]
logs["learning_rate"] = learning_rate_scalar
logs["loss"] = loss_scalar
logging_loss = tr_loss
for key, value in logs.items():
tb_writer.add_scalar(key, value, global_step)
print(json.dumps({**logs, **{"step": global_step}}))
if args.local_rank in [-1, 0] and args.save_steps > 0 and global_step % args.save_steps == 0:
# Save model checkpoint
output_dir = os.path.join(args.output_dir, "checkpoint-{}".format(global_step))
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(output_dir)
tokenizer.save_pretrained(output_dir)
torch.save(args, os.path.join(output_dir, "training_args.bin"))
logger.info("Saving model checkpoint to %s", output_dir)
torch.save(optimizer.state_dict(), os.path.join(output_dir, "optimizer.pt"))
torch.save(scheduler.state_dict(), os.path.join(output_dir, "scheduler.pt"))
logger.info("Saving optimizer and scheduler states to %s", output_dir)
if args.max_steps > 0 and global_step > args.max_steps:
epoch_iterator.close()
break
if args.max_steps > 0 and global_step > args.max_steps:
train_iterator.close()
break
if args.local_rank in [-1, 0]:
tb_writer.close()
return global_step, tr_loss / global_step
def evaluate(args, model, tokenizer, prefix="", patience=0):
if args.model_type == "albert":
model.albert.set_regression_threshold(args.regression_threshold)
model.albert.set_patience(patience)
model.albert.reset_stats()
elif args.model_type == "bert":
model.bert.set_regression_threshold(args.regression_threshold)
model.bert.set_patience(patience)
model.bert.reset_stats()
else:
raise NotImplementedError()
# Loop to handle MNLI double evaluation (matched, mis-matched)
eval_task_names = ("mnli", "mnli-mm") if args.task_name == "mnli" else (args.task_name,)
eval_outputs_dirs = (args.output_dir, args.output_dir + "-MM") if args.task_name == "mnli" else (args.output_dir,)
results = {}
for eval_task, eval_output_dir in zip(eval_task_names, eval_outputs_dirs):
eval_dataset = load_and_cache_examples(args, eval_task, tokenizer, evaluate=True)
if not os.path.exists(eval_output_dir) and args.local_rank in [-1, 0]:
os.makedirs(eval_output_dir)
args.eval_batch_size = args.per_gpu_eval_batch_size * max(1, args.n_gpu)
# Note that DistributedSampler samples randomly
eval_sampler = SequentialSampler(eval_dataset)
eval_dataloader = DataLoader(eval_dataset, sampler=eval_sampler, batch_size=args.eval_batch_size)
# multi-gpu eval
if args.n_gpu > 1 and not isinstance(model, nn.DataParallel):
model = nn.DataParallel(model)
# Eval!
logger.info("***** Running evaluation {} *****".format(prefix))
logger.info(" Num examples = %d", len(eval_dataset))
logger.info(" Batch size = %d", args.eval_batch_size)
eval_loss = 0.0
nb_eval_steps = 0
preds = None
out_label_ids = None
for batch in tqdm(eval_dataloader, desc="Evaluating"):
model.eval()
batch = tuple(t.to(args.device) for t in batch)
with torch.no_grad():
inputs = {
"input_ids": batch[0],
"attention_mask": batch[1],
"labels": batch[3],
}
inputs["token_type_ids"] = batch[2]
outputs = model(**inputs)
tmp_eval_loss, logits = outputs[:2]
eval_loss += tmp_eval_loss.mean().item()
nb_eval_steps += 1
if preds is None:
preds = logits.detach().cpu().numpy()
out_label_ids = inputs["labels"].detach().cpu().numpy()
else:
preds = np.append(preds, logits.detach().cpu().numpy(), axis=0)
out_label_ids = np.append(out_label_ids, inputs["labels"].detach().cpu().numpy(), axis=0)
eval_loss = eval_loss / nb_eval_steps
if args.output_mode == "classification":
preds = np.argmax(preds, axis=1)
elif args.output_mode == "regression":
preds = np.squeeze(preds)
result = compute_metrics(eval_task, preds, out_label_ids)
results.update(result)
output_eval_file = os.path.join(eval_output_dir, prefix, "eval_results.txt")
with open(output_eval_file, "w") as writer:
logger.info("***** Eval results {} *****".format(prefix))
for key in sorted(result.keys()):
logger.info(" %s = %s", key, str(result[key]))
print(" %s = %s" % (key, str(result[key])))
writer.write("%s = %s\n" % (key, str(result[key])))
if args.eval_all_checkpoints and patience != 0:
if args.model_type == "albert":
model.albert.log_stats()
elif args.model_type == "bert":
model.bert.log_stats()
else:
raise NotImplementedError()
return results
def load_and_cache_examples(args, task, tokenizer, evaluate=False):
if args.local_rank not in [-1, 0] and not evaluate:
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
processor = processors[task]()
output_mode = output_modes[task]
# Load data features from cache or dataset file
cached_features_file = os.path.join(
args.data_dir,
"cached_{}_{}_{}_{}".format(
"dev" if evaluate else "train",
list(filter(None, args.model_name_or_path.split("/"))).pop(),
str(args.max_seq_length),
str(task),
),
)
if os.path.exists(cached_features_file) and not args.overwrite_cache:
logger.info("Loading features from cached file %s", cached_features_file)
features = torch.load(cached_features_file)
else:
logger.info("Creating features from dataset file at %s", args.data_dir)
label_list = processor.get_labels()
if task in ["mnli", "mnli-mm"] and args.model_type in ["roberta", "xlmroberta"]:
# HACK(label indices are swapped in RoBERTa pretrained model)
label_list[1], label_list[2] = label_list[2], label_list[1]
examples = (
processor.get_dev_examples(args.data_dir) if evaluate else processor.get_train_examples(args.data_dir)
)
features = convert_examples_to_features(
examples,
tokenizer,
label_list=label_list,
max_length=args.max_seq_length,
output_mode=output_mode,
)
if args.local_rank in [-1, 0]:
logger.info("Saving features into cached file %s", cached_features_file)
torch.save(features, cached_features_file)
if args.local_rank == 0 and not evaluate:
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
# Convert to Tensors and build dataset
all_input_ids = torch.tensor([f.input_ids for f in features], dtype=torch.long)
all_attention_mask = torch.tensor([f.attention_mask for f in features], dtype=torch.long)
all_token_type_ids = torch.tensor([f.token_type_ids for f in features], dtype=torch.long)
if output_mode == "classification":
all_labels = torch.tensor([f.label for f in features], dtype=torch.long)
elif output_mode == "regression":
all_labels = torch.tensor([f.label for f in features], dtype=torch.float)
dataset = TensorDataset(all_input_ids, all_attention_mask, all_token_type_ids, all_labels)
return dataset
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the .tsv files (or other data files) for the task.",
)
parser.add_argument(
"--model_type",
default=None,
type=str,
required=True,
help="Model type selected in the list: " + ", ".join(MODEL_CLASSES.keys()),
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pre-trained model or shortcut name.",
)
parser.add_argument(
"--task_name",
default=None,
type=str,
required=True,
help="The name of the task to train selected in the list: " + ", ".join(processors.keys()),
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
parser.add_argument(
"--patience",
default="0",
type=str,
required=False,
)
parser.add_argument(
"--regression_threshold",
default=0,
type=float,
required=False,
)
# Other parameters
parser.add_argument(
"--config_name",
default="",
type=str,
help="Pretrained config name or path if not the same as model_name",
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default="",
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--max_seq_length",
default=128,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_eval", action="store_true", help="Whether to run eval on the dev set.")
parser.add_argument(
"--evaluate_during_training",
action="store_true",
help="Run evaluation during training at each logging step.",
)
parser.add_argument(
"--do_lower_case",
action="store_true",
help="Set this flag if you are using an uncased model.",
)
parser.add_argument(
"--per_gpu_train_batch_size",
default=8,
type=int,
help="Batch size per GPU/CPU for training.",
)
parser.add_argument(
"--per_gpu_eval_batch_size",
default=1,
type=int,
help="Batch size per GPU/CPU for evaluation.",
)
parser.add_argument(
"--gradient_accumulation_steps",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument(
"--learning_rate",
default=5e-5,
type=float,
help="The initial learning rate for Adam.",
)
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight decay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--max_grad_norm", default=1.0, type=float, help="Max gradient norm.")
parser.add_argument(
"--num_train_epochs",
default=3.0,
type=float,
help="Total number of training epochs to perform.",
)
parser.add_argument(
"--max_steps",
default=-1,
type=int,
help="If > 0: set total number of training steps to perform. Override num_train_epochs.",
)
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument("--logging_steps", type=int, default=500, help="Log every X updates steps.")
parser.add_argument(
"--save_steps",
type=int,
default=500,
help="Save checkpoint every X updates steps.",
)
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument("--no_cuda", action="store_true", help="Avoid using CUDA when available")
parser.add_argument(
"--overwrite_output_dir",
action="store_true",
help="Overwrite the content of the output directory",
)
parser.add_argument(
"--overwrite_cache",
action="store_true",
help="Overwrite the cached training and evaluation sets",
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O1",
help=(
"For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']. "
"See details at https://nvidia.github.io/apex/amp.html"
),
)
parser.add_argument(
"--local_rank",
type=int,
default=-1,
help="For distributed training: local_rank",
)
parser.add_argument("--server_ip", type=str, default="", help="For distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="For distant debugging.")
args = parser.parse_args()
if (
os.path.exists(args.output_dir)
and os.listdir(args.output_dir)
and args.do_train
and not args.overwrite_output_dir
):
raise ValueError(
"Output directory ({}) already exists and is not empty. Use --overwrite_output_dir to overcome.".format(
args.output_dir
)
)
# Setup distant debugging if needed
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
# Setup CUDA, GPU & distributed training
if args.local_rank == -1 or args.no_cuda:
device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = torch.cuda.device_count()
else: # Initializes the distributed backend which will take care of sychronizing nodes/GPUs
torch.cuda.set_device(args.local_rank)
device = torch.device("cuda", args.local_rank)
torch.distributed.init_process_group(backend="nccl")
args.n_gpu = 1
args.device = device
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
args.local_rank,
device,
args.n_gpu,
bool(args.local_rank != -1),
args.fp16,
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
# Set seed
set_seed(args)
# Prepare GLUE task
args.task_name = args.task_name.lower()
if args.task_name not in processors:
raise ValueError("Task not found: %s" % (args.task_name))
processor = processors[args.task_name]()
args.output_mode = output_modes[args.task_name]
label_list = processor.get_labels()
num_labels = len(label_list)
if args.patience != "0" and args.per_gpu_eval_batch_size != 1:
raise ValueError("The eval batch size must be 1 with PABEE inference on.")
# Load pretrained model and tokenizer
if args.local_rank not in [-1, 0]:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
args.model_type = args.model_type.lower()
config_class, model_class, tokenizer_class = MODEL_CLASSES[args.model_type]
config = config_class.from_pretrained(
args.config_name if args.config_name else args.model_name_or_path,
num_labels=num_labels,
finetuning_task=args.task_name,
cache_dir=args.cache_dir if args.cache_dir else None,
)
tokenizer = tokenizer_class.from_pretrained(
args.tokenizer_name if args.tokenizer_name else args.model_name_or_path,
do_lower_case=args.do_lower_case,
cache_dir=args.cache_dir if args.cache_dir else None,
)
model = model_class.from_pretrained(
args.model_name_or_path,
from_tf=bool(".ckpt" in args.model_name_or_path),
config=config,
cache_dir=args.cache_dir if args.cache_dir else None,
)
if args.local_rank == 0:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
model.to(args.device)
print("Total Model Parameters:", sum(param.numel() for param in model.parameters()))
output_layers_param_num = sum(param.numel() for param in model.classifiers.parameters())
print("Output Layers Parameters:", output_layers_param_num)
single_output_layer_param_num = sum(param.numel() for param in model.classifiers[0].parameters())
print(
"Added Output Layers Parameters:",
output_layers_param_num - single_output_layer_param_num,
)
logger.info("Training/evaluation parameters %s", args)
# Training
if args.do_train:
train_dataset = load_and_cache_examples(args, args.task_name, tokenizer, evaluate=False)
global_step, tr_loss = train(args, train_dataset, model, tokenizer)
logger.info(" global_step = %s, average loss = %s", global_step, tr_loss)
# Saving best-practices: if you use defaults names for the model, you can reload it using from_pretrained()
if args.do_train and (args.local_rank == -1 or torch.distributed.get_rank() == 0):
logger.info("Saving model checkpoint to %s", args.output_dir)
# Save a trained model, configuration and tokenizer using `save_pretrained()`.
# They can then be reloaded using `from_pretrained()`
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(args.output_dir)
tokenizer.save_pretrained(args.output_dir)
# Good practice: save your training arguments together with the trained model
torch.save(args, os.path.join(args.output_dir, "training_args.bin"))
# Load a trained model and vocabulary that you have fine-tuned
model = model_class.from_pretrained(args.output_dir)
tokenizer = tokenizer_class.from_pretrained(args.output_dir)
model.to(args.device)
# Evaluation
results = {}
if args.do_eval and args.local_rank in [-1, 0]:
patience_list = [int(x) for x in args.patience.split(",")]
tokenizer = tokenizer_class.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case)
checkpoints = [args.output_dir]
if args.eval_all_checkpoints:
checkpoints = [
os.path.dirname(c) for c in sorted(glob.glob(args.output_dir + "/**/" + WEIGHTS_NAME, recursive=True))
]
logger.info("Evaluate the following checkpoints: %s", checkpoints)
for checkpoint in checkpoints:
global_step = checkpoint.split("-")[-1] if len(checkpoints) > 1 else ""
prefix = checkpoint.split("/")[-1] if checkpoint.find("checkpoint") != -1 else ""
model = model_class.from_pretrained(checkpoint)
model.to(args.device)
print(f"Evaluation for checkpoint {prefix}")
for patience in patience_list:
result = evaluate(args, model, tokenizer, prefix=prefix, patience=patience)
result = {k + "_{}".format(global_step): v for k, v in result.items()}
results.update(result)
return results
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/bert-loses-patience/test_run_glue_with_pabee.py
|
import argparse
import logging
import sys
from unittest.mock import patch
import run_glue_with_pabee
from transformers.testing_utils import TestCasePlus
logging.basicConfig(level=logging.DEBUG)
logger = logging.getLogger()
def get_setup_file():
parser = argparse.ArgumentParser()
parser.add_argument("-f")
args = parser.parse_args()
return args.f
class PabeeTests(TestCasePlus):
def test_run_glue(self):
stream_handler = logging.StreamHandler(sys.stdout)
logger.addHandler(stream_handler)
tmp_dir = self.get_auto_remove_tmp_dir()
testargs = f"""
run_glue_with_pabee.py
--model_type albert
--model_name_or_path albert-base-v2
--data_dir ./tests/fixtures/tests_samples/MRPC/
--output_dir {tmp_dir}
--overwrite_output_dir
--task_name mrpc
--do_train
--do_eval
--per_gpu_train_batch_size=2
--per_gpu_eval_batch_size=1
--learning_rate=2e-5
--max_steps=50
--warmup_steps=2
--seed=42
--max_seq_length=128
""".split()
with patch.object(sys, "argv", testargs):
result = run_glue_with_pabee.main()
for value in result.values():
self.assertGreaterEqual(value, 0.75)
| 0 |
hf_public_repos/transformers/examples/research_projects/bert-loses-patience
|
hf_public_repos/transformers/examples/research_projects/bert-loses-patience/pabee/modeling_pabee_albert.py
|
# coding=utf-8
# Copyright 2020 Google AI, Google Brain, the HuggingFace Inc. team and Microsoft Corporation.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch ALBERT model with Patience-based Early Exit. """
import logging
import torch
from torch import nn
from torch.nn import CrossEntropyLoss, MSELoss
from transformers.file_utils import add_start_docstrings, add_start_docstrings_to_model_forward
from transformers.models.albert.modeling_albert import (
ALBERT_INPUTS_DOCSTRING,
ALBERT_START_DOCSTRING,
AlbertModel,
AlbertPreTrainedModel,
AlbertTransformer,
)
logger = logging.getLogger(__name__)
class AlbertTransformerWithPabee(AlbertTransformer):
def adaptive_forward(self, hidden_states, current_layer, attention_mask=None, head_mask=None):
if current_layer == 0:
hidden_states = self.embedding_hidden_mapping_in(hidden_states)
else:
hidden_states = hidden_states[0]
layers_per_group = int(self.config.num_hidden_layers / self.config.num_hidden_groups)
# Index of the hidden group
group_idx = int(current_layer / (self.config.num_hidden_layers / self.config.num_hidden_groups))
layer_group_output = self.albert_layer_groups[group_idx](
hidden_states,
attention_mask,
head_mask[group_idx * layers_per_group : (group_idx + 1) * layers_per_group],
)
hidden_states = layer_group_output[0]
return (hidden_states,)
@add_start_docstrings(
"The bare ALBERT Model transformer with PABEE outputting raw hidden-states without any specific head on top.",
ALBERT_START_DOCSTRING,
)
class AlbertModelWithPabee(AlbertModel):
def __init__(self, config):
super().__init__(config)
self.encoder = AlbertTransformerWithPabee(config)
self.init_weights()
self.patience = 0
self.inference_instances_num = 0
self.inference_layers_num = 0
self.regression_threshold = 0
def set_regression_threshold(self, threshold):
self.regression_threshold = threshold
def set_patience(self, patience):
self.patience = patience
def reset_stats(self):
self.inference_instances_num = 0
self.inference_layers_num = 0
def log_stats(self):
avg_inf_layers = self.inference_layers_num / self.inference_instances_num
message = (
f"*** Patience = {self.patience} Avg. Inference Layers = {avg_inf_layers:.2f} Speed Up ="
f" {1 - avg_inf_layers / self.config.num_hidden_layers:.2f} ***"
)
print(message)
@add_start_docstrings_to_model_forward(ALBERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_dropout=None,
output_layers=None,
regression=False,
):
r"""
Return:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~transformers.AlbertConfig`) and inputs:
last_hidden_state (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
pooler_output (:obj:`torch.FloatTensor`: of shape :obj:`(batch_size, hidden_size)`):
Last layer hidden-state of the first token of the sequence (classification token)
further processed by a Linear layer and a Tanh activation function. The Linear
layer weights are trained from the next sentence prediction (classification)
objective during pre-training.
This output is usually *not* a good summary
of the semantic content of the input, you're often better with averaging or pooling
the sequence of hidden-states for the whole input sequence.
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
if attention_mask is None:
attention_mask = torch.ones(input_shape, device=device)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
extended_attention_mask = attention_mask.unsqueeze(1).unsqueeze(2)
extended_attention_mask = extended_attention_mask.to(dtype=self.dtype) # fp16 compatibility
extended_attention_mask = (1.0 - extended_attention_mask) * -10000.0
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids, position_ids=position_ids, token_type_ids=token_type_ids, inputs_embeds=inputs_embeds
)
encoder_outputs = embedding_output
if self.training:
res = []
for i in range(self.config.num_hidden_layers):
encoder_outputs = self.encoder.adaptive_forward(
encoder_outputs,
current_layer=i,
attention_mask=extended_attention_mask,
head_mask=head_mask,
)
pooled_output = self.pooler_activation(self.pooler(encoder_outputs[0][:, 0]))
logits = output_layers[i](output_dropout(pooled_output))
res.append(logits)
elif self.patience == 0: # Use all layers for inference
encoder_outputs = self.encoder(encoder_outputs, extended_attention_mask, head_mask=head_mask)
pooled_output = self.pooler_activation(self.pooler(encoder_outputs[0][:, 0]))
res = [output_layers[self.config.num_hidden_layers - 1](pooled_output)]
else:
patient_counter = 0
patient_result = None
calculated_layer_num = 0
for i in range(self.config.num_hidden_layers):
calculated_layer_num += 1
encoder_outputs = self.encoder.adaptive_forward(
encoder_outputs,
current_layer=i,
attention_mask=extended_attention_mask,
head_mask=head_mask,
)
pooled_output = self.pooler_activation(self.pooler(encoder_outputs[0][:, 0]))
logits = output_layers[i](pooled_output)
if regression:
labels = logits.detach()
if patient_result is not None:
patient_labels = patient_result.detach()
if (patient_result is not None) and torch.abs(patient_result - labels) < self.regression_threshold:
patient_counter += 1
else:
patient_counter = 0
else:
labels = logits.detach().argmax(dim=1)
if patient_result is not None:
patient_labels = patient_result.detach().argmax(dim=1)
if (patient_result is not None) and torch.all(labels.eq(patient_labels)):
patient_counter += 1
else:
patient_counter = 0
patient_result = logits
if patient_counter == self.patience:
break
res = [patient_result]
self.inference_layers_num += calculated_layer_num
self.inference_instances_num += 1
return res
@add_start_docstrings(
"""Albert Model transformer with PABEE and a sequence classification/regression head on top (a linear layer on top of
the pooled output) e.g. for GLUE tasks. """,
ALBERT_START_DOCSTRING,
)
class AlbertForSequenceClassificationWithPabee(AlbertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.albert = AlbertModelWithPabee(config)
self.dropout = nn.Dropout(config.classifier_dropout_prob)
self.classifiers = nn.ModuleList(
[nn.Linear(config.hidden_size, self.config.num_labels) for _ in range(config.num_hidden_layers)]
)
self.init_weights()
@add_start_docstrings_to_model_forward(ALBERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss.
Indices should be in ``[0, ..., config.num_labels - 1]``.
If ``config.num_labels == 1`` a regression loss is computed (Mean-Square loss),
If ``config.num_labels > 1`` a classification loss is computed (Cross-Entropy).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~transformers.AlbertConfig`) and inputs:
loss (`optional`, returned when ``labels`` is provided) ``torch.FloatTensor`` of shape ``(1,)``:
Classification (or regression if config.num_labels==1) loss.
logits ``torch.FloatTensor`` of shape ``(batch_size, config.num_labels)``
Classification (or regression if config.num_labels==1) scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
Examples::
from transformers import AlbertTokenizer
from pabee import AlbertForSequenceClassificationWithPabee
from torch import nn
import torch
tokenizer = AlbertTokenizer.from_pretrained('albert-base-v2')
model = AlbertForSequenceClassificationWithPabee.from_pretrained('albert-base-v2')
input_ids = torch.tensor(tokenizer.encode("Hello, my dog is cute")).unsqueeze(0) # Batch size 1
labels = torch.tensor([1]).unsqueeze(0) # Batch size 1
outputs = model(input_ids, labels=labels)
loss, logits = outputs[:2]
"""
logits = self.albert(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_dropout=self.dropout,
output_layers=self.classifiers,
regression=self.num_labels == 1,
)
outputs = (logits[-1],)
if labels is not None:
total_loss = None
total_weights = 0
for ix, logits_item in enumerate(logits):
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
loss = loss_fct(logits_item.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits_item.view(-1, self.num_labels), labels.view(-1))
if total_loss is None:
total_loss = loss
else:
total_loss += loss * (ix + 1)
total_weights += ix + 1
outputs = (total_loss / total_weights,) + outputs
return outputs
| 0 |
hf_public_repos/transformers/examples/research_projects/bert-loses-patience
|
hf_public_repos/transformers/examples/research_projects/bert-loses-patience/pabee/modeling_pabee_bert.py
|
# coding=utf-8
# Copyright 2020 The Google AI Language Team Authors, The HuggingFace Inc. team and Microsoft Corporation.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch BERT model with Patience-based Early Exit. """
import logging
import torch
from torch import nn
from torch.nn import CrossEntropyLoss, MSELoss
from transformers.file_utils import add_start_docstrings, add_start_docstrings_to_model_forward
from transformers.models.bert.modeling_bert import (
BERT_INPUTS_DOCSTRING,
BERT_START_DOCSTRING,
BertEncoder,
BertModel,
BertPreTrainedModel,
)
logger = logging.getLogger(__name__)
class BertEncoderWithPabee(BertEncoder):
def adaptive_forward(self, hidden_states, current_layer, attention_mask=None, head_mask=None):
layer_outputs = self.layer[current_layer](hidden_states, attention_mask, head_mask[current_layer])
hidden_states = layer_outputs[0]
return hidden_states
@add_start_docstrings(
"The bare Bert Model transformer with PABEE outputting raw hidden-states without any specific head on top.",
BERT_START_DOCSTRING,
)
class BertModelWithPabee(BertModel):
"""
The model can behave as an encoder (with only self-attention) as well
as a decoder, in which case a layer of cross-attention is added between
the self-attention layers, following the architecture described in `Attention is all you need`_ by Ashish Vaswani,
Noam Shazeer, Niki Parmar, Jakob Uszkoreit, Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
To behave as a decoder the model needs to be initialized with the
:obj:`is_decoder` argument of the configuration set to :obj:`True`; an
:obj:`encoder_hidden_states` is expected as an input to the forward pass.
.. _`Attention is all you need`:
https://arxiv.org/abs/1706.03762
"""
def __init__(self, config):
super().__init__(config)
self.encoder = BertEncoderWithPabee(config)
self.init_weights()
self.patience = 0
self.inference_instances_num = 0
self.inference_layers_num = 0
self.regression_threshold = 0
def set_regression_threshold(self, threshold):
self.regression_threshold = threshold
def set_patience(self, patience):
self.patience = patience
def reset_stats(self):
self.inference_instances_num = 0
self.inference_layers_num = 0
def log_stats(self):
avg_inf_layers = self.inference_layers_num / self.inference_instances_num
message = (
f"*** Patience = {self.patience} Avg. Inference Layers = {avg_inf_layers:.2f} Speed Up ="
f" {1 - avg_inf_layers / self.config.num_hidden_layers:.2f} ***"
)
print(message)
@add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
output_dropout=None,
output_layers=None,
regression=False,
):
r"""
Return:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~transformers.BertConfig`) and inputs:
last_hidden_state (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
pooler_output (:obj:`torch.FloatTensor`: of shape :obj:`(batch_size, hidden_size)`):
Last layer hidden-state of the first token of the sequence (classification token)
further processed by a Linear layer and a Tanh activation function. The Linear
layer weights are trained from the next sentence prediction (classification)
objective during pre-training.
This output is usually *not* a good summary
of the semantic content of the input, you're often better with averaging or pooling
the sequence of hidden-states for the whole input sequence.
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
if attention_mask is None:
attention_mask = torch.ones(input_shape, device=device)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape, device)
# If a 2D ou 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids=input_ids, position_ids=position_ids, token_type_ids=token_type_ids, inputs_embeds=inputs_embeds
)
encoder_outputs = embedding_output
if self.training:
res = []
for i in range(self.config.num_hidden_layers):
encoder_outputs = self.encoder.adaptive_forward(
encoder_outputs, current_layer=i, attention_mask=extended_attention_mask, head_mask=head_mask
)
pooled_output = self.pooler(encoder_outputs)
logits = output_layers[i](output_dropout(pooled_output))
res.append(logits)
elif self.patience == 0: # Use all layers for inference
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
)
pooled_output = self.pooler(encoder_outputs[0])
res = [output_layers[self.config.num_hidden_layers - 1](pooled_output)]
else:
patient_counter = 0
patient_result = None
calculated_layer_num = 0
for i in range(self.config.num_hidden_layers):
calculated_layer_num += 1
encoder_outputs = self.encoder.adaptive_forward(
encoder_outputs, current_layer=i, attention_mask=extended_attention_mask, head_mask=head_mask
)
pooled_output = self.pooler(encoder_outputs)
logits = output_layers[i](pooled_output)
if regression:
labels = logits.detach()
if patient_result is not None:
patient_labels = patient_result.detach()
if (patient_result is not None) and torch.abs(patient_result - labels) < self.regression_threshold:
patient_counter += 1
else:
patient_counter = 0
else:
labels = logits.detach().argmax(dim=1)
if patient_result is not None:
patient_labels = patient_result.detach().argmax(dim=1)
if (patient_result is not None) and torch.all(labels.eq(patient_labels)):
patient_counter += 1
else:
patient_counter = 0
patient_result = logits
if patient_counter == self.patience:
break
res = [patient_result]
self.inference_layers_num += calculated_layer_num
self.inference_instances_num += 1
return res
@add_start_docstrings(
"""Bert Model transformer with PABEE and a sequence classification/regression head on top (a linear layer on top of
the pooled output) e.g. for GLUE tasks. """,
BERT_START_DOCSTRING,
)
class BertForSequenceClassificationWithPabee(BertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.bert = BertModelWithPabee(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifiers = nn.ModuleList(
[nn.Linear(config.hidden_size, self.config.num_labels) for _ in range(config.num_hidden_layers)]
)
self.init_weights()
@add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss.
Indices should be in :obj:`[0, ..., config.num_labels - 1]`.
If :obj:`config.num_labels == 1` a regression loss is computed (Mean-Square loss),
If :obj:`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~transformers.BertConfig`) and inputs:
loss (:obj:`torch.FloatTensor` of shape :obj:`(1,)`, `optional`, returned when :obj:`label` is provided):
Classification (or regression if config.num_labels==1) loss.
logits (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, config.num_labels)`):
Classification (or regression if config.num_labels==1) scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
Examples::
from transformers import BertTokenizer, BertForSequenceClassification
from pabee import BertForSequenceClassificationWithPabee
from torch import nn
import torch
tokenizer = BertTokenizer.from_pretrained('bert-base-uncased')
model = BertForSequenceClassificationWithPabee.from_pretrained('bert-base-uncased')
input_ids = torch.tensor(tokenizer.encode("Hello, my dog is cute", add_special_tokens=True)).unsqueeze(0) # Batch size 1
labels = torch.tensor([1]).unsqueeze(0) # Batch size 1
outputs = model(input_ids, labels=labels)
loss, logits = outputs[:2]
"""
logits = self.bert(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_dropout=self.dropout,
output_layers=self.classifiers,
regression=self.num_labels == 1,
)
outputs = (logits[-1],)
if labels is not None:
total_loss = None
total_weights = 0
for ix, logits_item in enumerate(logits):
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
loss = loss_fct(logits_item.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits_item.view(-1, self.num_labels), labels.view(-1))
if total_loss is None:
total_loss = loss
else:
total_loss += loss * (ix + 1)
total_weights += ix + 1
outputs = (total_loss / total_weights,) + outputs
return outputs
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/bertology/requirements.txt
|
transformers == 3.5.1
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/bertology/run_prune_gpt.py
|
#!/usr/bin/env python3
""" This script is adapted from the Bertology pruning code (https://github.com/huggingface/transformers/blob/783d7d2629e97c5f0c5f9ef01b8c66410275c204/examples/research_projects/bertology/run_bertology.py)
to prune GPT-like models. The author is @altsoph.
"""
import argparse
import logging
import os
from datetime import datetime
import numpy as np
import torch
from torch import nn
from torch.utils.data import DataLoader, RandomSampler, TensorDataset
from tqdm import tqdm
from transformers import GPT2LMHeadModel
logger = logging.getLogger(__name__)
def save_model(model, dirpath):
# save results
if os.path.exists(dirpath):
if os.path.exists(os.path.join(dirpath, "config.json")) and os.path.isfile(
os.path.join(dirpath, "config.json")
):
os.remove(os.path.join(dirpath, "config.json"))
if os.path.exists(os.path.join(dirpath, "pytorch_model.bin")) and os.path.isfile(
os.path.join(dirpath, "pytorch_model.bin")
):
os.remove(os.path.join(dirpath, "pytorch_model.bin"))
else:
os.makedirs(dirpath)
model.save_pretrained(dirpath)
def entropy(p, unlogit=False):
"""Compute the entropy of a probability distribution"""
exponent = 2
if unlogit:
p = torch.pow(p, exponent)
plogp = p * torch.log(p)
plogp[p == 0] = 0
return -plogp.sum(dim=-1)
def print_2d_tensor(tensor):
"""Print a 2D tensor"""
logger.info("lv, h >\t" + "\t".join(f"{x + 1}" for x in range(len(tensor))))
for row in range(len(tensor)):
if tensor.dtype != torch.long:
logger.info(f"layer {row + 1}:\t" + "\t".join(f"{x:.5f}" for x in tensor[row].cpu().data))
else:
logger.info(f"layer {row + 1}:\t" + "\t".join(f"{x:d}" for x in tensor[row].cpu().data))
def compute_heads_importance(
args, model, eval_dataloader, compute_entropy=True, compute_importance=True, head_mask=None, actually_pruned=False
):
"""This method shows how to compute:
- head attention entropy
- head importance scores according to http://arxiv.org/abs/1905.10650
"""
# Prepare our tensors
n_layers, n_heads = model.config.num_hidden_layers, model.config.num_attention_heads
head_importance = torch.zeros(n_layers, n_heads).to(args.device)
attn_entropy = torch.zeros(n_layers, n_heads).to(args.device)
if head_mask is None:
head_mask = torch.ones(n_layers, n_heads).to(args.device)
head_mask.requires_grad_(requires_grad=True)
# If actually pruned attention multi-head, set head mask to None to avoid shape mismatch
if actually_pruned:
head_mask = None
tot_tokens = 0.0
total_loss = 0.0
for step, inputs in enumerate(tqdm(eval_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])):
inputs = tuple(t.to(args.device) for t in inputs)
(input_ids,) = inputs
# Do a forward pass (not with torch.no_grad() since we need gradients for importance score - see below)
outputs = model(input_ids, labels=input_ids, head_mask=head_mask)
# (loss), lm_logits, presents, (all hidden_states), (attentions)
loss, _, all_attentions = (
outputs[0],
outputs[1],
outputs[-1],
) # Loss and logits are the first, attention the last
loss.backward() # Backpropagate to populate the gradients in the head mask
total_loss += loss.detach().cpu().numpy()
if compute_entropy:
for layer, attn in enumerate(all_attentions):
masked_entropy = entropy(attn.detach(), True)
attn_entropy[layer] += masked_entropy.sum(-1).sum(0).sum(0).detach()
if compute_importance:
head_importance += head_mask.grad.abs().detach()
tot_tokens += torch.ones_like(input_ids).float().detach().sum().data
# Normalize
attn_entropy /= tot_tokens
head_importance /= tot_tokens
# Layerwise importance normalization
if not args.dont_normalize_importance_by_layer:
exponent = 2
norm_by_layer = torch.pow(torch.pow(head_importance, exponent).sum(-1), 1 / exponent)
head_importance /= norm_by_layer.unsqueeze(-1) + 1e-20
if not args.dont_normalize_global_importance:
head_importance = (head_importance - head_importance.min()) / (head_importance.max() - head_importance.min())
# Print matrices
if compute_entropy:
logger.info("Attention entropies")
print_2d_tensor(attn_entropy)
if compute_importance:
logger.info("Head importance scores")
print_2d_tensor(head_importance)
logger.info("Head ranked by importance scores")
head_ranks = torch.zeros(head_importance.numel(), dtype=torch.long, device=args.device)
head_ranks[head_importance.view(-1).sort(descending=True)[1]] = torch.arange(
head_importance.numel(), device=args.device
)
head_ranks = head_ranks.view_as(head_importance)
print_2d_tensor(head_ranks)
return attn_entropy, head_importance, total_loss
def mask_heads(args, model, eval_dataloader):
"""This method shows how to mask head (set some heads to zero), to test the effect on the network,
based on the head importance scores, as described in Michel et al. (http://arxiv.org/abs/1905.10650)
"""
_, head_importance, loss = compute_heads_importance(args, model, eval_dataloader, compute_entropy=False)
original_score = 1 / loss # instead of downsteam score use the LM loss
logger.info("Pruning: original score: %f, threshold: %f", original_score, original_score * args.masking_threshold)
new_head_mask = torch.ones_like(head_importance)
num_to_mask = max(1, int(new_head_mask.numel() * args.masking_amount))
current_score = original_score
while current_score >= original_score * args.masking_threshold:
head_mask = new_head_mask.clone().detach() # save current head mask
# heads from least important to most - keep only not-masked heads
head_importance[head_mask == 0.0] = float("Inf")
current_heads_to_mask = head_importance.view(-1).sort()[1]
if len(current_heads_to_mask) <= num_to_mask:
print("BREAK BY num_to_mask")
break
# mask heads
current_heads_to_mask = current_heads_to_mask[:num_to_mask]
logger.info("Heads to mask: %s", str(current_heads_to_mask.tolist()))
new_head_mask = new_head_mask.view(-1)
new_head_mask[current_heads_to_mask] = 0.0
new_head_mask = new_head_mask.view_as(head_mask)
new_head_mask = new_head_mask.clone().detach()
print_2d_tensor(new_head_mask)
# Compute metric and head importance again
_, head_importance, loss = compute_heads_importance(
args, model, eval_dataloader, compute_entropy=False, head_mask=new_head_mask
)
current_score = 1 / loss
logger.info(
"Masking: current score: %f, remaining heads %d (%.1f percents)",
current_score,
new_head_mask.sum(),
new_head_mask.sum() / new_head_mask.numel() * 100,
)
logger.info("Final head mask")
print_2d_tensor(head_mask)
np.save(os.path.join(args.output_dir, "head_mask.npy"), head_mask.detach().cpu().numpy())
return head_mask
def prune_heads(args, model, eval_dataloader, head_mask):
"""This method shows how to prune head (remove heads weights) based on
the head importance scores as described in Michel et al. (http://arxiv.org/abs/1905.10650)
"""
# Try pruning and test time speedup
# Pruning is like masking but we actually remove the masked weights
before_time = datetime.now()
_, _, loss = compute_heads_importance(
args, model, eval_dataloader, compute_entropy=False, compute_importance=False, head_mask=head_mask
)
score_masking = 1 / loss
original_time = datetime.now() - before_time
original_num_params = sum(p.numel() for p in model.parameters())
heads_to_prune = {
layer: (1 - head_mask[layer].long()).nonzero().squeeze().tolist() for layer in range(len(head_mask))
}
for k, v in heads_to_prune.items():
if isinstance(v, int):
heads_to_prune[k] = [
v,
]
assert sum(len(h) for h in heads_to_prune.values()) == (1 - head_mask.long()).sum().item()
model.prune_heads(heads_to_prune)
pruned_num_params = sum(p.numel() for p in model.parameters())
before_time = datetime.now()
_, _, loss = compute_heads_importance(
args,
model,
eval_dataloader,
compute_entropy=False,
compute_importance=False,
head_mask=None,
actually_pruned=True,
)
score_pruning = 1 / loss
new_time = datetime.now() - before_time
logger.info(
"Pruning: original num of params: %.2e, after pruning %.2e (%.1f percents)",
original_num_params,
pruned_num_params,
pruned_num_params / original_num_params * 100,
)
logger.info("Pruning: score with masking: %f score with pruning: %f", score_masking, score_pruning)
logger.info("Pruning: speed ratio (original timing / new timing): %f percents", original_time / new_time * 100)
save_model(model, args.output_dir)
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the .tsv files (or other data files) for the task.",
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
# Other parameters
parser.add_argument(
"--config_name",
default="",
type=str,
help="Pretrained config name or path if not the same as model_name_or_path",
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name_or_path",
)
parser.add_argument(
"--cache_dir",
default=None,
type=str,
help="Where do you want to store the pre-trained models downloaded from s3",
)
parser.add_argument(
"--data_subset", type=int, default=-1, help="If > 0: limit the data to a subset of data_subset instances."
)
parser.add_argument(
"--overwrite_output_dir", action="store_true", help="Whether to overwrite data in output directory"
)
parser.add_argument(
"--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets"
)
parser.add_argument(
"--dont_normalize_importance_by_layer", action="store_true", help="Don't normalize importance score by layers"
)
parser.add_argument(
"--dont_normalize_global_importance",
action="store_true",
help="Don't normalize all importance scores between 0 and 1",
)
parser.add_argument(
"--try_masking", action="store_true", help="Whether to try to mask head until a threshold of accuracy."
)
parser.add_argument(
"--masking_threshold",
default=0.9,
type=float,
help="masking threshold in term of metrics (stop masking when metric < threshold * original metric value).",
)
parser.add_argument(
"--masking_amount", default=0.1, type=float, help="Amount to heads to masking at each masking step."
)
parser.add_argument("--metric_name", default="acc", type=str, help="Metric to use for head masking.")
parser.add_argument(
"--max_seq_length",
default=128,
type=int,
help=(
"The maximum total input sequence length after WordPiece tokenization. \n"
"Sequences longer than this will be truncated, sequences shorter padded."
),
)
parser.add_argument("--batch_size", default=1, type=int, help="Batch size.")
parser.add_argument("--seed", type=int, default=42)
parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus")
parser.add_argument("--no_cuda", action="store_true", help="Whether not to use CUDA when available")
parser.add_argument("--server_ip", type=str, default="", help="Can be used for distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="Can be used for distant debugging.")
args = parser.parse_args()
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
# Setup devices and distributed training
if args.local_rank == -1 or args.no_cuda:
args.device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = 0 if args.no_cuda else torch.cuda.device_count()
else:
torch.cuda.set_device(args.local_rank)
args.device = torch.device("cuda", args.local_rank)
args.n_gpu = 1
torch.distributed.init_process_group(backend="nccl") # Initializes the distributed backend
# Setup logging
logging.basicConfig(level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN)
logger.info("device: {} n_gpu: {}, distributed: {}".format(args.device, args.n_gpu, bool(args.local_rank != -1)))
model = GPT2LMHeadModel.from_pretrained(args.model_name_or_path)
# Distributed and parallel training
model.to(args.device)
if args.local_rank != -1:
model = nn.parallel.DistributedDataParallel(
model, device_ids=[args.local_rank], output_device=args.local_rank, find_unused_parameters=True
)
elif args.n_gpu > 1:
model = nn.DataParallel(model)
# Print/save training arguments
os.makedirs(args.output_dir, exist_ok=True)
torch.save(args, os.path.join(args.output_dir, "run_args.bin"))
logger.info("Training/evaluation parameters %s", args)
# Prepare dataset
numpy_data = np.concatenate(
[
np.loadtxt(args.data_dir, dtype=np.int64),
]
)
train_tensor_dataset = (torch.from_numpy(numpy_data),)
train_data = TensorDataset(*train_tensor_dataset)
train_sampler = RandomSampler(train_data)
eval_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.batch_size)
# Compute head entropy and importance score
compute_heads_importance(args, model, eval_dataloader)
# Try head masking (set heads to zero until the score goes under a threshole)
# and head pruning (remove masked heads and see the effect on the network)
if args.try_masking and args.masking_threshold > 0.0 and args.masking_threshold < 1.0:
head_mask = mask_heads(args, model, eval_dataloader)
prune_heads(args, model, eval_dataloader, head_mask)
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/bertology/run_bertology.py
|
#!/usr/bin/env python3
# Copyright 2018 CMU and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Bertology: this script shows how you can explore the internals of the models in the library to:
- compute the entropy of the head attentions
- compute the importance of each head
- prune (remove) the low importance head.
Some parts of this script are adapted from the code of Michel et al. (http://arxiv.org/abs/1905.10650)
which is available at https://github.com/pmichel31415/are-16-heads-really-better-than-1
"""
import argparse
import logging
import os
from datetime import datetime
import numpy as np
import torch
from torch import nn
from torch.utils.data import DataLoader, SequentialSampler, Subset
from torch.utils.data.distributed import DistributedSampler
from tqdm import tqdm
import transformers
from transformers import (
AutoConfig,
AutoModelForSequenceClassification,
AutoTokenizer,
GlueDataset,
default_data_collator,
glue_compute_metrics,
glue_output_modes,
glue_processors,
set_seed,
)
from transformers.trainer_utils import is_main_process
logger = logging.getLogger(__name__)
def entropy(p):
"""Compute the entropy of a probability distribution"""
plogp = p * torch.log(p)
plogp[p == 0] = 0
return -plogp.sum(dim=-1)
def print_2d_tensor(tensor):
"""Print a 2D tensor"""
logger.info("lv, h >\t" + "\t".join(f"{x + 1}" for x in range(len(tensor))))
for row in range(len(tensor)):
if tensor.dtype != torch.long:
logger.info(f"layer {row + 1}:\t" + "\t".join(f"{x:.5f}" for x in tensor[row].cpu().data))
else:
logger.info(f"layer {row + 1}:\t" + "\t".join(f"{x:d}" for x in tensor[row].cpu().data))
def compute_heads_importance(
args, model, eval_dataloader, compute_entropy=True, compute_importance=True, head_mask=None, actually_pruned=False
):
"""This method shows how to compute:
- head attention entropy
- head importance scores according to http://arxiv.org/abs/1905.10650
"""
# Prepare our tensors
n_layers, n_heads = model.config.num_hidden_layers, model.config.num_attention_heads
head_importance = torch.zeros(n_layers, n_heads).to(args.device)
attn_entropy = torch.zeros(n_layers, n_heads).to(args.device)
if head_mask is None:
head_mask = torch.ones(n_layers, n_heads).to(args.device)
head_mask.requires_grad_(requires_grad=True)
# If actually pruned attention multi-head, set head mask to None to avoid shape mismatch
if actually_pruned:
head_mask = None
preds = None
labels = None
tot_tokens = 0.0
for step, inputs in enumerate(tqdm(eval_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])):
for k, v in inputs.items():
inputs[k] = v.to(args.device)
# Do a forward pass (not with torch.no_grad() since we need gradients for importance score - see below)
outputs = model(**inputs, head_mask=head_mask)
loss, logits, all_attentions = (
outputs[0],
outputs[1],
outputs[-1],
) # Loss and logits are the first, attention the last
loss.backward() # Backpropagate to populate the gradients in the head mask
if compute_entropy:
for layer, attn in enumerate(all_attentions):
masked_entropy = entropy(attn.detach()) * inputs["attention_mask"].float().unsqueeze(1)
attn_entropy[layer] += masked_entropy.sum(-1).sum(0).detach()
if compute_importance:
head_importance += head_mask.grad.abs().detach()
# Also store our logits/labels if we want to compute metrics afterwards
if preds is None:
preds = logits.detach().cpu().numpy()
labels = inputs["labels"].detach().cpu().numpy()
else:
preds = np.append(preds, logits.detach().cpu().numpy(), axis=0)
labels = np.append(labels, inputs["labels"].detach().cpu().numpy(), axis=0)
tot_tokens += inputs["attention_mask"].float().detach().sum().data
# Normalize
attn_entropy /= tot_tokens
head_importance /= tot_tokens
# Layerwise importance normalization
if not args.dont_normalize_importance_by_layer:
exponent = 2
norm_by_layer = torch.pow(torch.pow(head_importance, exponent).sum(-1), 1 / exponent)
head_importance /= norm_by_layer.unsqueeze(-1) + 1e-20
if not args.dont_normalize_global_importance:
head_importance = (head_importance - head_importance.min()) / (head_importance.max() - head_importance.min())
# Print/save matrices
np.save(os.path.join(args.output_dir, "attn_entropy.npy"), attn_entropy.detach().cpu().numpy())
np.save(os.path.join(args.output_dir, "head_importance.npy"), head_importance.detach().cpu().numpy())
logger.info("Attention entropies")
print_2d_tensor(attn_entropy)
logger.info("Head importance scores")
print_2d_tensor(head_importance)
logger.info("Head ranked by importance scores")
head_ranks = torch.zeros(head_importance.numel(), dtype=torch.long, device=args.device)
head_ranks[head_importance.view(-1).sort(descending=True)[1]] = torch.arange(
head_importance.numel(), device=args.device
)
head_ranks = head_ranks.view_as(head_importance)
print_2d_tensor(head_ranks)
return attn_entropy, head_importance, preds, labels
def mask_heads(args, model, eval_dataloader):
"""This method shows how to mask head (set some heads to zero), to test the effect on the network,
based on the head importance scores, as described in Michel et al. (http://arxiv.org/abs/1905.10650)
"""
_, head_importance, preds, labels = compute_heads_importance(args, model, eval_dataloader, compute_entropy=False)
preds = np.argmax(preds, axis=1) if args.output_mode == "classification" else np.squeeze(preds)
original_score = glue_compute_metrics(args.task_name, preds, labels)[args.metric_name]
logger.info("Pruning: original score: %f, threshold: %f", original_score, original_score * args.masking_threshold)
new_head_mask = torch.ones_like(head_importance)
num_to_mask = max(1, int(new_head_mask.numel() * args.masking_amount))
current_score = original_score
while current_score >= original_score * args.masking_threshold:
head_mask = new_head_mask.clone() # save current head mask
# heads from least important to most - keep only not-masked heads
head_importance[head_mask == 0.0] = float("Inf")
current_heads_to_mask = head_importance.view(-1).sort()[1]
if len(current_heads_to_mask) <= num_to_mask:
break
# mask heads
current_heads_to_mask = current_heads_to_mask[:num_to_mask]
logger.info("Heads to mask: %s", str(current_heads_to_mask.tolist()))
new_head_mask = new_head_mask.view(-1)
new_head_mask[current_heads_to_mask] = 0.0
new_head_mask = new_head_mask.view_as(head_mask)
new_head_mask = new_head_mask.clone().detach()
print_2d_tensor(new_head_mask)
# Compute metric and head importance again
_, head_importance, preds, labels = compute_heads_importance(
args, model, eval_dataloader, compute_entropy=False, head_mask=new_head_mask
)
preds = np.argmax(preds, axis=1) if args.output_mode == "classification" else np.squeeze(preds)
current_score = glue_compute_metrics(args.task_name, preds, labels)[args.metric_name]
logger.info(
"Masking: current score: %f, remaining heads %d (%.1f percents)",
current_score,
new_head_mask.sum(),
new_head_mask.sum() / new_head_mask.numel() * 100,
)
logger.info("Final head mask")
print_2d_tensor(head_mask)
np.save(os.path.join(args.output_dir, "head_mask.npy"), head_mask.detach().cpu().numpy())
return head_mask
def prune_heads(args, model, eval_dataloader, head_mask):
"""This method shows how to prune head (remove heads weights) based on
the head importance scores as described in Michel et al. (http://arxiv.org/abs/1905.10650)
"""
# Try pruning and test time speedup
# Pruning is like masking but we actually remove the masked weights
before_time = datetime.now()
_, _, preds, labels = compute_heads_importance(
args, model, eval_dataloader, compute_entropy=False, compute_importance=False, head_mask=head_mask
)
preds = np.argmax(preds, axis=1) if args.output_mode == "classification" else np.squeeze(preds)
score_masking = glue_compute_metrics(args.task_name, preds, labels)[args.metric_name]
original_time = datetime.now() - before_time
original_num_params = sum(p.numel() for p in model.parameters())
heads_to_prune = {
layer: (1 - head_mask[layer].long()).nonzero().squeeze().tolist() for layer in range(len(head_mask))
}
assert sum(len(h) for h in heads_to_prune.values()) == (1 - head_mask.long()).sum().item()
model.prune_heads(heads_to_prune)
pruned_num_params = sum(p.numel() for p in model.parameters())
before_time = datetime.now()
_, _, preds, labels = compute_heads_importance(
args,
model,
eval_dataloader,
compute_entropy=False,
compute_importance=False,
head_mask=None,
actually_pruned=True,
)
preds = np.argmax(preds, axis=1) if args.output_mode == "classification" else np.squeeze(preds)
score_pruning = glue_compute_metrics(args.task_name, preds, labels)[args.metric_name]
new_time = datetime.now() - before_time
logger.info(
"Pruning: original num of params: %.2e, after pruning %.2e (%.1f percents)",
original_num_params,
pruned_num_params,
pruned_num_params / original_num_params * 100,
)
logger.info("Pruning: score with masking: %f score with pruning: %f", score_masking, score_pruning)
logger.info("Pruning: speed ratio (new timing / original timing): %f percents", original_time / new_time * 100)
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the .tsv files (or other data files) for the task.",
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--task_name",
default=None,
type=str,
required=True,
help="The name of the task to train selected in the list: " + ", ".join(glue_processors.keys()),
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
# Other parameters
parser.add_argument(
"--config_name",
default="",
type=str,
help="Pretrained config name or path if not the same as model_name_or_path",
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name_or_path",
)
parser.add_argument(
"--cache_dir",
default=None,
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--data_subset", type=int, default=-1, help="If > 0: limit the data to a subset of data_subset instances."
)
parser.add_argument(
"--overwrite_output_dir", action="store_true", help="Whether to overwrite data in output directory"
)
parser.add_argument(
"--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets"
)
parser.add_argument(
"--dont_normalize_importance_by_layer", action="store_true", help="Don't normalize importance score by layers"
)
parser.add_argument(
"--dont_normalize_global_importance",
action="store_true",
help="Don't normalize all importance scores between 0 and 1",
)
parser.add_argument(
"--try_masking", action="store_true", help="Whether to try to mask head until a threshold of accuracy."
)
parser.add_argument(
"--masking_threshold",
default=0.9,
type=float,
help="masking threshold in term of metrics (stop masking when metric < threshold * original metric value).",
)
parser.add_argument(
"--masking_amount", default=0.1, type=float, help="Amount to heads to masking at each masking step."
)
parser.add_argument("--metric_name", default="acc", type=str, help="Metric to use for head masking.")
parser.add_argument(
"--max_seq_length",
default=128,
type=int,
help=(
"The maximum total input sequence length after WordPiece tokenization. \n"
"Sequences longer than this will be truncated, sequences shorter padded."
),
)
parser.add_argument("--batch_size", default=1, type=int, help="Batch size.")
parser.add_argument("--seed", type=int, default=42)
parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus")
parser.add_argument("--no_cuda", action="store_true", help="Whether not to use CUDA when available")
parser.add_argument("--server_ip", type=str, default="", help="Can be used for distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="Can be used for distant debugging.")
args = parser.parse_args()
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
# Setup devices and distributed training
if args.local_rank == -1 or args.no_cuda:
args.device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = 0 if args.no_cuda else torch.cuda.device_count()
else:
torch.cuda.set_device(args.local_rank)
args.device = torch.device("cuda", args.local_rank)
args.n_gpu = 1
torch.distributed.init_process_group(backend="nccl") # Initializes the distributed backend
# Setup logging
logging.basicConfig(level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN)
logger.info("device: {} n_gpu: {}, distributed: {}".format(args.device, args.n_gpu, bool(args.local_rank != -1)))
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
# Set seeds
set_seed(args.seed)
# Prepare GLUE task
args.task_name = args.task_name.lower()
if args.task_name not in glue_processors:
raise ValueError("Task not found: %s" % (args.task_name))
processor = glue_processors[args.task_name]()
args.output_mode = glue_output_modes[args.task_name]
label_list = processor.get_labels()
num_labels = len(label_list)
# Load pretrained model and tokenizer
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
config = AutoConfig.from_pretrained(
args.config_name if args.config_name else args.model_name_or_path,
num_labels=num_labels,
finetuning_task=args.task_name,
output_attentions=True,
cache_dir=args.cache_dir,
)
tokenizer = AutoTokenizer.from_pretrained(
args.tokenizer_name if args.tokenizer_name else args.model_name_or_path,
cache_dir=args.cache_dir,
)
model = AutoModelForSequenceClassification.from_pretrained(
args.model_name_or_path,
from_tf=bool(".ckpt" in args.model_name_or_path),
config=config,
cache_dir=args.cache_dir,
)
# Distributed and parallel training
model.to(args.device)
if args.local_rank != -1:
model = nn.parallel.DistributedDataParallel(
model, device_ids=[args.local_rank], output_device=args.local_rank, find_unused_parameters=True
)
elif args.n_gpu > 1:
model = nn.DataParallel(model)
# Print/save training arguments
os.makedirs(args.output_dir, exist_ok=True)
torch.save(args, os.path.join(args.output_dir, "run_args.bin"))
logger.info("Training/evaluation parameters %s", args)
# Prepare dataset for the GLUE task
eval_dataset = GlueDataset(args, tokenizer=tokenizer, mode="dev")
if args.data_subset > 0:
eval_dataset = Subset(eval_dataset, list(range(min(args.data_subset, len(eval_dataset)))))
eval_sampler = SequentialSampler(eval_dataset) if args.local_rank == -1 else DistributedSampler(eval_dataset)
eval_dataloader = DataLoader(
eval_dataset, sampler=eval_sampler, batch_size=args.batch_size, collate_fn=default_data_collator
)
# Compute head entropy and importance score
compute_heads_importance(args, model, eval_dataloader)
# Try head masking (set heads to zero until the score goes under a threshole)
# and head pruning (remove masked heads and see the effect on the network)
if args.try_masking and args.masking_threshold > 0.0 and args.masking_threshold < 1.0:
head_mask = mask_heads(args, model, eval_dataloader)
prune_heads(args, model, eval_dataloader, head_mask)
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/zero-shot-distillation/README.md
|
# Zero-shot classifier distillation
Author: @joeddav
This script provides a way to improve the speed and memory performance of a zero-shot classifier by training a more
efficient student model from the zero-shot teacher's predictions over an unlabeled dataset.
The zero-shot classification pipeline uses a model pre-trained on natural language inference (NLI) to determine the
compatibility of a set of candidate class names with a given sequence. This serves as a convenient out-of-the-box
classifier without the need for labeled training data. However, for a given sequence, the method requires each
possible label to be fed through the large NLI model separately. Thus for `N` sequences and `K` classes, a total of
`N*K` forward passes through the model are required. This requirement slows inference considerably, particularly as
`K` grows.
Given (1) an unlabeled corpus and (2) a set of candidate class names, the provided script trains a student model
with a standard classification head with `K` output dimensions. The resulting student model can then be used for
classifying novel text instances with a significant boost in speed and memory performance while retaining similar
classification performance to the original zero-shot model
### Usage
A teacher NLI model can be distilled to a more efficient student model by running [`distill_classifier.py`](https://github.com/huggingface/transformers/blob/main/examples/research_projects/zero-shot-distillation/distill_classifier.py):
```
python distill_classifier.py \
--data_file <unlabeled_data.txt> \
--class_names_file <class_names.txt> \
--output_dir <output_dir>
```
`<unlabeled_data.txt>` should be a text file with a single unlabeled example per line. `<class_names.txt>` is a text file with one class name per line.
Other optional arguments include:
- `--teacher_name_or_path` (default: `roberta-large-mnli`): The name or path of the NLI teacher model.
- `--student_name_or_path` (default: `distillbert-base-uncased`): The name or path of the student model which will
be fine-tuned to copy the teacher predictions.
- `--hypothesis_template` (default `"This example is {}."`): The template used to turn each label into an NLI-style
hypothesis when generating teacher predictions. This template must include a `{}` or similar syntax for the
candidate label to be inserted into the template. For example, the default template is `"This example is {}."` With
the candidate label `sports`, this would be fed into the model like `[CLS] sequence to classify [SEP] This example
is sports . [SEP]`.
- `--multi_class`: Whether or not multiple candidate labels can be true. By default, the scores are normalized such
that the sum of the label likelihoods for each sequence is 1. If `--multi_class` is passed, the labels are
considered independent and probabilities are normalized for each candidate by doing a softmax of the entailment
score vs. the contradiction score. This is sometimes called "multi-class multi-label" classification.
- `--temperature` (default: `1.0`): The temperature applied to the softmax of the teacher model predictions. A
higher temperature results in a student with smoother (lower confidence) predictions than the teacher while a value
`<1` resultings in a higher-confidence, peaked distribution. The default `1.0` is equivalent to no smoothing.
- `--teacher_batch_size` (default: `32`): The batch size used for generating a single set of teacher predictions.
Does not affect training. Use `--per_device_train_batch_size` to change the training batch size.
Any of the arguments in the 🤗 Trainer's
[`TrainingArguments`](https://huggingface.co/transformers/main_classes/trainer.html?#trainingarguments) can also be
modified, such as `--learning_rate`, `--fp16`, `--no_cuda`, `--warmup_steps`, etc. Run `python distill_classifier.py
-h` for a full list of available arguments or consult the [Trainer
documentation](https://huggingface.co/transformers/main_classes/trainer.html#trainingarguments).
> **Note**: Distributed and TPU training are not currently supported. Single-node multi-GPU is supported, however,
and will run automatically if multiple GPUs are available.
### Example: Topic classification
> A full colab demo notebook of this example can be found [here](https://colab.research.google.com/drive/1mjBjd0cR8G57ZpsnFCS3ngGyo5nCa9ya?usp=sharing).
Let's say we're interested in classifying news articles into one of four topic categories: "the world", "sports",
"business", or "science/tech". We have an unlabeled dataset, [AG's News](https://huggingface.co/datasets/ag_news),
which corresponds to this problem (in reality AG's News is annotated, but we will pretend it is not for the sake of
example).
We can use an NLI model like `roberta-large-mnli` for zero-shot classification like so:
```python
>>> class_names = ["the world", "sports", "business", "science/tech"]
>>> hypothesis_template = "This text is about {}."
>>> sequence = "A new moon has been discovered in Jupiter's orbit"
>>> zero_shot_classifier = pipeline("zero-shot-classification", model="roberta-large-mnli")
>>> zero_shot_classifier(sequence, class_names, hypothesis_template=hypothesis_template)
{'sequence': "A new moon has been discovered in Jupiter's orbit",
'labels': ['science/tech', 'the world', 'business', 'sports'],
'scores': [0.7035840153694153, 0.18744826316833496, 0.06027870625257492, 0.04868902638554573]}
```
Unfortunately, inference is slow since each of our 4 class names must be fed through the large model for every
sequence to be classified. But with our unlabeled data we can distill the model to a small distilbert classifier to
make future inference much faster.
To run the script, we will need to put each training example (text only) from AG's News on its own line in
`agnews/train_unlabeled.txt`, and each of the four class names in the newline-separated `agnews/class_names.txt`.
Then we can run distillation with the following command:
```bash
python distill_classifier.py \
--data_file ./agnews/unlabeled.txt \
--class_names_files ./agnews/class_names.txt \
--teacher_name_or_path roberta-large-mnli \
--hypothesis_template "This text is about {}." \
--output_dir ./agnews/distilled
```
The script will generate a set of soft zero-shot predictions from `roberta-large-mnli` for each example in
`agnews/unlabeled.txt`. It will then train a student distilbert classifier on the teacher predictions and
save the resulting model in `./agnews/distilled`.
The resulting model can then be loaded and used like any other pre-trained classifier:
```python
from transformers import AutoModelForSequenceClassification, AutoTokenizer
model = AutoModelForSequenceClassification.from_pretrained("./agnews/distilled")
tokenizer = AutoTokenizer.from_pretrained("./agnews/distilled")
```
and even used trivially with a `TextClassificationPipeline`:
```python
>>> distilled_classifier = TextClassificationPipeline(model=model, tokenizer=tokenizer, return_all_scores=True)
>>> distilled_classifier(sequence)
[[{'label': 'the world', 'score': 0.14899294078350067},
{'label': 'sports', 'score': 0.03205857425928116},
{'label': 'business', 'score': 0.05943061783909798},
{'label': 'science/tech', 'score': 0.7595179080963135}]]
```
> Tip: pass `device=0` when constructing a pipeline to run on a GPU
As we can see, the results of the student closely resemble that of the trainer despite never having seen this
example during training. Now let's do a quick & dirty speed comparison simulating 16K examples with a batch size of
16:
```python
for _ in range(1000):
zero_shot_classifier([sequence] * 16, class_names)
# runs in 1m 23s on a single V100 GPU
```
```python
%%time
for _ in range(1000):
distilled_classifier([sequence] * 16)
# runs in 10.3s on a single V100 GPU
```
As we can see, the distilled student model runs an order of magnitude faster than its teacher NLI model. This is
also a seeting where we only have `K=4` possible labels. The higher the number of classes for a given task, the more
drastic the speedup will be, since the zero-shot teacher's complexity scales linearly with the number of classes.
Since we secretly have access to ground truth labels for AG's news, we can evaluate the accuracy of each model. The
original zero-shot model `roberta-large-mnli` gets an accuracy of 69.3% on the held-out test set. After training a
student on the unlabeled training set, the distilled model gets a similar score of 70.4%.
Lastly, you can share the distilled model with the community and/or use it with our inference API by [uploading it
to the 🤗 Hub](https://huggingface.co/transformers/model_sharing.html). We've uploaded the distilled model from this
example at
[joeddav/distilbert-base-uncased-agnews-student](https://huggingface.co/joeddav/distilbert-base-uncased-agnews-student).
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hf_public_repos/transformers/examples/research_projects/zero-shot-distillation/distill_classifier.py
|
import logging
import os
import sys
from dataclasses import dataclass, field
from typing import List, Optional
import torch
from datasets import Dataset
from torch import nn
from tqdm.auto import tqdm
from transformers import (
AutoModelForSequenceClassification,
AutoTokenizer,
HfArgumentParser,
Trainer,
TrainingArguments,
set_seed,
utils,
)
from transformers.trainer_utils import get_last_checkpoint, is_main_process
DESCRIPTION = """
Distills an NLI-based zero-shot classifier to a smaller, more efficient model with a fixed set of candidate class
names. Useful for speeding up zero-shot classification in cases where labeled training data is not available, but
when only a single fixed set of classes is needed. Takes a teacher NLI model, student classifier model, unlabeled
dataset, and set of K possible class names. Yields a single classifier with K outputs corresponding to the provided
class names.
"""
logger = logging.getLogger(__name__)
@dataclass
class TeacherModelArguments:
teacher_name_or_path: Optional[str] = field(
default="roberta-large-mnli", metadata={"help": "The NLI/zero-shot teacher model to be distilled."}
)
hypothesis_template: Optional[str] = field(
default="This example is {}.",
metadata={
"help": (
"Template used to turn class names into mock hypotheses for teacher NLI model. Must include {{}} "
"where class name is inserted."
)
},
)
teacher_batch_size: Optional[int] = field(
default=32, metadata={"help": "Batch size for generating teacher predictions."}
)
multi_label: Optional[bool] = field(
default=False,
metadata={
"help": (
"Allow multiple classes to be true rather than forcing them to sum to 1 (sometimes called "
"multi-class multi-label classification)."
)
},
)
temperature: Optional[float] = field(
default=1.0, metadata={"help": "Temperature applied to teacher softmax for distillation."}
)
@dataclass
class StudentModelArguments:
student_name_or_path: Optional[str] = field(
default="distilbert-base-uncased", metadata={"help": "The NLI/zero-shot teacher model to be distilled."}
)
@dataclass
class DataTrainingArguments:
data_file: str = field(metadata={"help": "Text file with one unlabeled instance per line."})
class_names_file: str = field(metadata={"help": "Text file with one class name per line."})
use_fast_tokenizer: bool = field(
default=True,
metadata={"help": "Whether to use one of the fast tokenizer (backed by the Rust tokenizers library) or not."},
)
@dataclass
class DistillTrainingArguments(TrainingArguments):
output_dir: Optional[str] = field(
default=None,
metadata={"help": "The output directory where the model predictions and checkpoints will be written."},
)
per_device_train_batch_size: int = field(
default=32, metadata={"help": "Batch size per GPU/TPU core/CPU for training."}
)
per_device_eval_batch_size: int = field(
default=128, metadata={"help": "Batch size per GPU/TPU core/CPU for evaluation."}
)
num_train_epochs: float = field(default=1.0, metadata={"help": "Total number of training epochs to perform."})
do_train: bool = field(default=True, metadata={"help": "Whether to run training of student model."})
do_eval: bool = field(
default=True,
metadata={
"help": (
"Whether to evaluate the agreement of the final student predictions and the teacher predictions "
"after training."
)
},
)
save_total_limit: Optional[int] = field(
default=0,
metadata={
"help": (
"Limit the total amount of checkpoints. "
"Deletes the older checkpoints in the output_dir. Default is 0 (no checkpoints)."
)
},
)
class DistillationTrainer(Trainer):
def compute_loss(self, model, inputs, return_outputs=False):
target_p = inputs["labels"]
outputs = model(inputs["input_ids"], attention_mask=inputs["attention_mask"])
logits = outputs[0]
loss = -torch.sum(target_p * logits.log_softmax(dim=-1), axis=-1).mean()
if return_outputs:
return loss, outputs
return loss
def read_lines(path):
lines = []
with open(path, "r") as f:
for line in f:
line = line.strip()
if len(line) > 0:
lines.append(line)
return lines
def get_premise_hypothesis_pairs(examples, class_names, hypothesis_template):
premises = []
hypotheses = []
for example in examples:
for name in class_names:
premises.append(example)
hypotheses.append(hypothesis_template.format(name))
return premises, hypotheses
def get_entailment_id(config):
for label, ind in config.label2id.items():
if label.lower().startswith("entail"):
return ind
logger.warning("Could not identify entailment dimension from teacher config label2id. Setting to -1.")
return -1
def get_teacher_predictions(
model_path: str,
examples: List[str],
class_names: List[str],
hypothesis_template: str,
batch_size: int,
temperature: float,
multi_label: bool,
use_fast_tokenizer: bool,
no_cuda: bool,
fp16: bool,
):
"""
Gets predictions by the same method as the zero-shot pipeline but with DataParallel & more efficient batching
"""
model = AutoModelForSequenceClassification.from_pretrained(model_path)
model_config = model.config
if not no_cuda and torch.cuda.is_available():
model = nn.DataParallel(model.cuda())
batch_size *= len(model.device_ids)
tokenizer = AutoTokenizer.from_pretrained(model_path, use_fast=use_fast_tokenizer)
premises, hypotheses = get_premise_hypothesis_pairs(examples, class_names, hypothesis_template)
logits = []
for i in tqdm(range(0, len(premises), batch_size)):
batch_premises = premises[i : i + batch_size]
batch_hypotheses = hypotheses[i : i + batch_size]
encodings = tokenizer(
batch_premises,
batch_hypotheses,
padding=True,
truncation="only_first",
return_tensors="pt",
)
with torch.cuda.amp.autocast(enabled=fp16):
with torch.no_grad():
outputs = model(**encodings)
logits.append(outputs.logits.detach().cpu().float())
entail_id = get_entailment_id(model_config)
contr_id = -1 if entail_id == 0 else 0
logits = torch.cat(logits, dim=0) # N*K x 3
nli_logits = logits.reshape(len(examples), len(class_names), -1)[..., [contr_id, entail_id]] # N x K x 2
if multi_label:
# softmax over (contr, entail) logits for each class independently
nli_prob = (nli_logits / temperature).softmax(-1)
else:
# softmax over entail logits across classes s.t. class probabilities sum to 1.
nli_prob = (nli_logits / temperature).softmax(1)
return nli_prob[..., 1] # N x K
def main():
parser = HfArgumentParser(
(DataTrainingArguments, TeacherModelArguments, StudentModelArguments, DistillTrainingArguments),
description=DESCRIPTION,
)
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
data_args, teacher_args, student_args, training_args = parser.parse_json_file(
json_file=os.path.abspath(sys.argv[1])
)
else:
data_args, teacher_args, student_args, training_args = parser.parse_args_into_dataclasses()
# Detecting last checkpoint.
last_checkpoint = None
if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
last_checkpoint = get_last_checkpoint(training_args.output_dir)
if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. "
"Use --overwrite_output_dir to overcome."
)
elif last_checkpoint is not None:
logger.info(
f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
"the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
logger.setLevel(logging.INFO if is_main_process(training_args.local_rank) else logging.WARN)
# Log on each process the small summary:
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}"
+ f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
utils.logging.set_verbosity_info()
utils.logging.enable_default_handler()
utils.logging.enable_explicit_format()
if training_args.local_rank != -1:
raise ValueError("Distributed training is not currently supported.")
if training_args.tpu_num_cores is not None:
raise ValueError("TPU acceleration is not currently supported.")
logger.info(f"Training/evaluation parameters {training_args}")
# Set seed before initializing model.
set_seed(training_args.seed)
# 1. read in data
examples = read_lines(data_args.data_file)
class_names = read_lines(data_args.class_names_file)
# 2. get teacher predictions and load into dataset
logger.info("Generating predictions from zero-shot teacher model")
teacher_soft_preds = get_teacher_predictions(
teacher_args.teacher_name_or_path,
examples,
class_names,
teacher_args.hypothesis_template,
teacher_args.teacher_batch_size,
teacher_args.temperature,
teacher_args.multi_label,
data_args.use_fast_tokenizer,
training_args.no_cuda,
training_args.fp16,
)
dataset = Dataset.from_dict(
{
"text": examples,
"labels": teacher_soft_preds,
}
)
# 3. create student
logger.info("Initializing student model")
model = AutoModelForSequenceClassification.from_pretrained(
student_args.student_name_or_path, num_labels=len(class_names)
)
tokenizer = AutoTokenizer.from_pretrained(student_args.student_name_or_path, use_fast=data_args.use_fast_tokenizer)
model.config.id2label = dict(enumerate(class_names))
model.config.label2id = {label: i for i, label in enumerate(class_names)}
# 4. train student on teacher predictions
dataset = dataset.map(tokenizer, input_columns="text")
dataset.set_format("torch")
def compute_metrics(p, return_outputs=False):
preds = p.predictions.argmax(-1)
proxy_labels = p.label_ids.argmax(-1) # "label_ids" are actually distributions
return {"agreement": (preds == proxy_labels).mean().item()}
trainer = DistillationTrainer(
model=model,
tokenizer=tokenizer,
args=training_args,
train_dataset=dataset,
compute_metrics=compute_metrics,
)
if training_args.do_train:
logger.info("Training student model on teacher predictions")
trainer.train()
if training_args.do_eval:
agreement = trainer.evaluate(eval_dataset=dataset)["eval_agreement"]
logger.info(f"Agreement of student and teacher predictions: {agreement * 100:0.2f}%")
trainer.save_model()
if __name__ == "__main__":
main()
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hf_public_repos/transformers/examples/research_projects/mlm_wwm/README.md
|
<!---
Copyright 2020 The HuggingFace Team. All rights reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
-->
## Whole Word Mask Language Model
These scripts leverage the 🤗 Datasets library and the Trainer API. You can easily customize them to your needs if you
need extra processing on your datasets.
The following examples, will run on a datasets hosted on our [hub](https://huggingface.co/datasets) or with your own
text files for training and validation. We give examples of both below.
The BERT authors released a new version of BERT using Whole Word Masking in May 2019. Instead of masking randomly
selected tokens (which may be part of words), they mask randomly selected words (masking all the tokens corresponding
to that word). This technique has been refined for Chinese in [this paper](https://arxiv.org/abs/1906.08101).
To fine-tune a model using whole word masking, use the following script:
```bash
python run_mlm_wwm.py \
--model_name_or_path roberta-base \
--dataset_name wikitext \
--dataset_config_name wikitext-2-raw-v1 \
--do_train \
--do_eval \
--output_dir /tmp/test-mlm-wwm
```
For Chinese models, we need to generate a reference files (which requires the ltp library), because it's tokenized at
the character level.
**Q :** Why a reference file?
**A :** Suppose we have a Chinese sentence like: `我喜欢你` The original Chinese-BERT will tokenize it as
`['我','喜','欢','你']` (character level). But `喜欢` is a whole word. For whole word masking proxy, we need a result
like `['我','喜','##欢','你']`, so we need a reference file to tell the model which position of the BERT original token
should be added `##`.
**Q :** Why LTP ?
**A :** Cause the best known Chinese WWM BERT is [Chinese-BERT-wwm](https://github.com/ymcui/Chinese-BERT-wwm) by HIT.
It works well on so many Chines Task like CLUE (Chinese GLUE). They use LTP, so if we want to fine-tune their model,
we need LTP.
You could run the following:
```bash
export TRAIN_FILE=/path/to/train/file
export LTP_RESOURCE=/path/to/ltp/tokenizer
export BERT_RESOURCE=/path/to/bert/tokenizer
export SAVE_PATH=/path/to/data/ref.txt
python run_chinese_ref.py \
--file_name=$TRAIN_FILE \
--ltp=$LTP_RESOURCE \
--bert=$BERT_RESOURCE \
--save_path=$SAVE_PATH
```
Then you can run the script like this:
```bash
export TRAIN_FILE=/path/to/train/file
export VALIDATION_FILE=/path/to/validation/file
export TRAIN_REF_FILE=/path/to/train/chinese_ref/file
export VALIDATION_REF_FILE=/path/to/validation/chinese_ref/file
export OUTPUT_DIR=/tmp/test-mlm-wwm
python run_mlm_wwm.py \
--model_name_or_path roberta-base \
--train_file $TRAIN_FILE \
--validation_file $VALIDATION_FILE \
--train_ref_file $TRAIN_REF_FILE \
--validation_ref_file $VALIDATION_REF_FILE \
--do_train \
--do_eval \
--output_dir $OUTPUT_DIR
```
**Note1:** On TPU, you should the flag `--pad_to_max_length` to make sure all your batches have the same length.
**Note2:** And if you have any questions or something goes wrong when runing this code, don't hesitate to pin @wlhgtc.
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hf_public_repos/transformers/examples/research_projects
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hf_public_repos/transformers/examples/research_projects/mlm_wwm/run_mlm_wwm.py
|
# coding=utf-8
# Copyright 2020 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning the library models for masked language modeling (BERT, ALBERT, RoBERTa...) with whole word masking on a
text file or a dataset.
Here is the full list of checkpoints on the hub that can be fine-tuned by this script:
https://huggingface.co/models?filter=fill-mask
"""
# You can also adapt this script on your own masked language modeling task. Pointers for this are left as comments.
import json
import logging
import math
import os
import sys
from dataclasses import dataclass, field
from typing import Optional
from datasets import Dataset, load_dataset
import transformers
from transformers import (
CONFIG_MAPPING,
MODEL_FOR_MASKED_LM_MAPPING,
AutoConfig,
AutoModelForMaskedLM,
AutoTokenizer,
DataCollatorForWholeWordMask,
HfArgumentParser,
Trainer,
TrainingArguments,
set_seed,
)
from transformers.trainer_utils import get_last_checkpoint, is_main_process
logger = logging.getLogger(__name__)
MODEL_CONFIG_CLASSES = list(MODEL_FOR_MASKED_LM_MAPPING.keys())
MODEL_TYPES = tuple(conf.model_type for conf in MODEL_CONFIG_CLASSES)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune, or train from scratch.
"""
model_name_or_path: Optional[str] = field(
default=None,
metadata={
"help": (
"The model checkpoint for weights initialization. Don't set if you want to train a model from scratch."
)
},
)
model_type: Optional[str] = field(
default=None,
metadata={"help": "If training from scratch, pass a model type from the list: " + ", ".join(MODEL_TYPES)},
)
config_overrides: Optional[str] = field(
default=None,
metadata={
"help": (
"Override some existing default config settings when a model is trained from scratch. Example: "
"n_embd=10,resid_pdrop=0.2,scale_attn_weights=false,summary_type=cls_index"
)
},
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
use_fast_tokenizer: bool = field(
default=True,
metadata={"help": "Whether to use one of the fast tokenizer (backed by the tokenizers library) or not."},
)
model_revision: str = field(
default="main",
metadata={"help": "The specific model version to use (can be a branch name, tag name or commit id)."},
)
use_auth_token: bool = field(
default=False,
metadata={
"help": (
"Will use the token generated when running `huggingface-cli login` (necessary to use this script "
"with private models)."
)
},
)
def __post_init__(self):
if self.config_overrides is not None and (self.config_name is not None or self.model_name_or_path is not None):
raise ValueError(
"--config_overrides can't be used in combination with --config_name or --model_name_or_path"
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
dataset_name: Optional[str] = field(
default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_file: Optional[str] = field(default=None, metadata={"help": "The input training data file (a text file)."})
validation_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input evaluation data file to evaluate the perplexity on (a text file)."},
)
train_ref_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input train ref data file for whole word masking in Chinese."},
)
validation_ref_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input validation ref data file for whole word masking in Chinese."},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
validation_split_percentage: Optional[int] = field(
default=5,
metadata={
"help": "The percentage of the train set used as validation set in case there's no validation split"
},
)
max_seq_length: Optional[int] = field(
default=None,
metadata={
"help": (
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated. Default to the max input length of the model."
)
},
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
mlm_probability: float = field(
default=0.15, metadata={"help": "Ratio of tokens to mask for masked language modeling loss"}
)
pad_to_max_length: bool = field(
default=False,
metadata={
"help": (
"Whether to pad all samples to `max_seq_length`. "
"If False, will pad the samples dynamically when batching to the maximum length in the batch."
)
},
)
def __post_init__(self):
if self.train_file is not None:
extension = self.train_file.split(".")[-1]
assert extension in ["csv", "json", "txt"], "`train_file` should be a csv, a json or a txt file."
if self.validation_file is not None:
extension = self.validation_file.split(".")[-1]
assert extension in ["csv", "json", "txt"], "`validation_file` should be a csv, a json or a txt file."
def add_chinese_references(dataset, ref_file):
with open(ref_file, "r", encoding="utf-8") as f:
refs = [json.loads(line) for line in f.read().splitlines() if (len(line) > 0 and not line.isspace())]
assert len(dataset) == len(refs)
dataset_dict = {c: dataset[c] for c in dataset.column_names}
dataset_dict["chinese_ref"] = refs
return Dataset.from_dict(dataset_dict)
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
# Detecting last checkpoint.
last_checkpoint = None
if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
last_checkpoint = get_last_checkpoint(training_args.output_dir)
if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. "
"Use --overwrite_output_dir to overcome."
)
elif last_checkpoint is not None:
logger.info(
f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
"the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
logger.setLevel(logging.INFO if is_main_process(training_args.local_rank) else logging.WARN)
# Log on each process the small summary:
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}"
+ f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
logger.info("Training/evaluation parameters %s", training_args)
# Set seed before initializing model.
set_seed(training_args.seed)
# Get the datasets: you can either provide your own CSV/JSON/TXT training and evaluation files (see below)
# or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/
# (the dataset will be downloaded automatically from the datasets Hub).
#
# For CSV/JSON files, this script will use the column called 'text' or the first column if no column called
# 'text' is found. You can easily tweak this behavior (see below).
#
# In distributed training, the load_dataset function guarantee that only one local process can concurrently
# download the dataset.
if data_args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
datasets = load_dataset(data_args.dataset_name, data_args.dataset_config_name)
if "validation" not in datasets.keys():
datasets["validation"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[:{data_args.validation_split_percentage}%]",
)
datasets["train"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[{data_args.validation_split_percentage}%:]",
)
else:
data_files = {}
if data_args.train_file is not None:
data_files["train"] = data_args.train_file
if data_args.validation_file is not None:
data_files["validation"] = data_args.validation_file
extension = data_args.train_file.split(".")[-1]
if extension == "txt":
extension = "text"
datasets = load_dataset(extension, data_files=data_files)
# See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
# https://huggingface.co/docs/datasets/loading_datasets.
# Load pretrained model and tokenizer
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
config_kwargs = {
"cache_dir": model_args.cache_dir,
"revision": model_args.model_revision,
"use_auth_token": True if model_args.use_auth_token else None,
}
if model_args.config_name:
config = AutoConfig.from_pretrained(model_args.config_name, **config_kwargs)
elif model_args.model_name_or_path:
config = AutoConfig.from_pretrained(model_args.model_name_or_path, **config_kwargs)
else:
config = CONFIG_MAPPING[model_args.model_type]()
logger.warning("You are instantiating a new config instance from scratch.")
if model_args.config_overrides is not None:
logger.info(f"Overriding config: {model_args.config_overrides}")
config.update_from_string(model_args.config_overrides)
logger.info(f"New config: {config}")
tokenizer_kwargs = {
"cache_dir": model_args.cache_dir,
"use_fast": model_args.use_fast_tokenizer,
"revision": model_args.model_revision,
"use_auth_token": True if model_args.use_auth_token else None,
}
if model_args.tokenizer_name:
tokenizer = AutoTokenizer.from_pretrained(model_args.tokenizer_name, **tokenizer_kwargs)
elif model_args.model_name_or_path:
tokenizer = AutoTokenizer.from_pretrained(model_args.model_name_or_path, **tokenizer_kwargs)
else:
raise ValueError(
"You are instantiating a new tokenizer from scratch. This is not supported by this script. "
"You can do it from another script, save it, and load it from here, using --tokenizer_name."
)
if model_args.model_name_or_path:
model = AutoModelForMaskedLM.from_pretrained(
model_args.model_name_or_path,
from_tf=bool(".ckpt" in model_args.model_name_or_path),
config=config,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
token=True if model_args.use_auth_token else None,
)
else:
logger.info("Training new model from scratch")
model = AutoModelForMaskedLM.from_config(config)
model.resize_token_embeddings(len(tokenizer))
# Preprocessing the datasets.
# First we tokenize all the texts.
if training_args.do_train:
column_names = datasets["train"].column_names
else:
column_names = datasets["validation"].column_names
text_column_name = "text" if "text" in column_names else column_names[0]
padding = "max_length" if data_args.pad_to_max_length else False
def tokenize_function(examples):
# Remove empty lines
examples["text"] = [line for line in examples["text"] if len(line) > 0 and not line.isspace()]
return tokenizer(examples["text"], padding=padding, truncation=True, max_length=data_args.max_seq_length)
tokenized_datasets = datasets.map(
tokenize_function,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=[text_column_name],
load_from_cache_file=not data_args.overwrite_cache,
)
# Add the chinese references if provided
if data_args.train_ref_file is not None:
tokenized_datasets["train"] = add_chinese_references(tokenized_datasets["train"], data_args.train_ref_file)
if data_args.validation_ref_file is not None:
tokenized_datasets["validation"] = add_chinese_references(
tokenized_datasets["validation"], data_args.validation_ref_file
)
# If we have ref files, need to avoid it removed by trainer
has_ref = data_args.train_ref_file or data_args.validation_ref_file
if has_ref:
training_args.remove_unused_columns = False
# Data collator
# This one will take care of randomly masking the tokens.
data_collator = DataCollatorForWholeWordMask(tokenizer=tokenizer, mlm_probability=data_args.mlm_probability)
# Initialize our Trainer
trainer = Trainer(
model=model,
args=training_args,
train_dataset=tokenized_datasets["train"] if training_args.do_train else None,
eval_dataset=tokenized_datasets["validation"] if training_args.do_eval else None,
tokenizer=tokenizer,
data_collator=data_collator,
)
# Training
if training_args.do_train:
if last_checkpoint is not None:
checkpoint = last_checkpoint
elif model_args.model_name_or_path is not None and os.path.isdir(model_args.model_name_or_path):
checkpoint = model_args.model_name_or_path
else:
checkpoint = None
train_result = trainer.train(resume_from_checkpoint=checkpoint)
trainer.save_model() # Saves the tokenizer too for easy upload
output_train_file = os.path.join(training_args.output_dir, "train_results.txt")
if trainer.is_world_process_zero():
with open(output_train_file, "w") as writer:
logger.info("***** Train results *****")
for key, value in sorted(train_result.metrics.items()):
logger.info(f" {key} = {value}")
writer.write(f"{key} = {value}\n")
# Need to save the state, since Trainer.save_model saves only the tokenizer with the model
trainer.state.save_to_json(os.path.join(training_args.output_dir, "trainer_state.json"))
# Evaluation
results = {}
if training_args.do_eval:
logger.info("*** Evaluate ***")
eval_output = trainer.evaluate()
perplexity = math.exp(eval_output["eval_loss"])
results["perplexity"] = perplexity
output_eval_file = os.path.join(training_args.output_dir, "eval_results_mlm_wwm.txt")
if trainer.is_world_process_zero():
with open(output_eval_file, "w") as writer:
logger.info("***** Eval results *****")
for key, value in sorted(results.items()):
logger.info(f" {key} = {value}")
writer.write(f"{key} = {value}\n")
return results
def _mp_fn(index):
# For xla_spawn (TPUs)
main()
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/mlm_wwm/run_chinese_ref.py
|
import argparse
import json
from typing import List
from ltp import LTP
from transformers.models.bert.tokenization_bert import BertTokenizer
def _is_chinese_char(cp):
"""Checks whether CP is the codepoint of a CJK character."""
# This defines a "chinese character" as anything in the CJK Unicode block:
# https://en.wikipedia.org/wiki/CJK_Unified_Ideographs_(Unicode_block)
#
# Note that the CJK Unicode block is NOT all Japanese and Korean characters,
# despite its name. The modern Korean Hangul alphabet is a different block,
# as is Japanese Hiragana and Katakana. Those alphabets are used to write
# space-separated words, so they are not treated specially and handled
# like the all of the other languages.
if (
(cp >= 0x4E00 and cp <= 0x9FFF)
or (cp >= 0x3400 and cp <= 0x4DBF) #
or (cp >= 0x20000 and cp <= 0x2A6DF) #
or (cp >= 0x2A700 and cp <= 0x2B73F) #
or (cp >= 0x2B740 and cp <= 0x2B81F) #
or (cp >= 0x2B820 and cp <= 0x2CEAF) #
or (cp >= 0xF900 and cp <= 0xFAFF)
or (cp >= 0x2F800 and cp <= 0x2FA1F) #
): #
return True
return False
def is_chinese(word: str):
# word like '180' or '身高' or '神'
for char in word:
char = ord(char)
if not _is_chinese_char(char):
return 0
return 1
def get_chinese_word(tokens: List[str]):
word_set = set()
for token in tokens:
chinese_word = len(token) > 1 and is_chinese(token)
if chinese_word:
word_set.add(token)
word_list = list(word_set)
return word_list
def add_sub_symbol(bert_tokens: List[str], chinese_word_set: set()):
if not chinese_word_set:
return bert_tokens
max_word_len = max([len(w) for w in chinese_word_set])
bert_word = bert_tokens
start, end = 0, len(bert_word)
while start < end:
single_word = True
if is_chinese(bert_word[start]):
l = min(end - start, max_word_len)
for i in range(l, 1, -1):
whole_word = "".join(bert_word[start : start + i])
if whole_word in chinese_word_set:
for j in range(start + 1, start + i):
bert_word[j] = "##" + bert_word[j]
start = start + i
single_word = False
break
if single_word:
start += 1
return bert_word
def prepare_ref(lines: List[str], ltp_tokenizer: LTP, bert_tokenizer: BertTokenizer):
ltp_res = []
for i in range(0, len(lines), 100):
res = ltp_tokenizer.pipeline(lines[i : i + 100], tasks=["cws"]).cws
res = [get_chinese_word(r) for r in res]
ltp_res.extend(res)
assert len(ltp_res) == len(lines)
bert_res = []
for i in range(0, len(lines), 100):
res = bert_tokenizer(lines[i : i + 100], add_special_tokens=True, truncation=True, max_length=512)
bert_res.extend(res["input_ids"])
assert len(bert_res) == len(lines)
ref_ids = []
for input_ids, chinese_word in zip(bert_res, ltp_res):
input_tokens = []
for id in input_ids:
token = bert_tokenizer._convert_id_to_token(id)
input_tokens.append(token)
input_tokens = add_sub_symbol(input_tokens, chinese_word)
ref_id = []
# We only save pos of chinese subwords start with ##, which mean is part of a whole word.
for i, token in enumerate(input_tokens):
if token[:2] == "##":
clean_token = token[2:]
# save chinese tokens' pos
if len(clean_token) == 1 and _is_chinese_char(ord(clean_token)):
ref_id.append(i)
ref_ids.append(ref_id)
assert len(ref_ids) == len(bert_res)
return ref_ids
def main(args):
# For Chinese (Ro)Bert, the best result is from : RoBERTa-wwm-ext (https://github.com/ymcui/Chinese-BERT-wwm)
# If we want to fine-tune these model, we have to use same tokenizer : LTP (https://github.com/HIT-SCIR/ltp)
with open(args.file_name, "r", encoding="utf-8") as f:
data = f.readlines()
data = [line.strip() for line in data if len(line) > 0 and not line.isspace()] # avoid delimiter like '\u2029'
ltp_tokenizer = LTP(args.ltp) # faster in GPU device
bert_tokenizer = BertTokenizer.from_pretrained(args.bert)
ref_ids = prepare_ref(data, ltp_tokenizer, bert_tokenizer)
with open(args.save_path, "w", encoding="utf-8") as f:
data = [json.dumps(ref) + "\n" for ref in ref_ids]
f.writelines(data)
if __name__ == "__main__":
parser = argparse.ArgumentParser(description="prepare_chinese_ref")
parser.add_argument(
"--file_name",
required=False,
type=str,
default="./resources/chinese-demo.txt",
help="file need process, same as training data in lm",
)
parser.add_argument(
"--ltp",
required=False,
type=str,
default="./resources/ltp",
help="resources for LTP tokenizer, usually a path",
)
parser.add_argument(
"--bert",
required=False,
type=str,
default="./resources/robert",
help="resources for Bert tokenizer",
)
parser.add_argument(
"--save_path",
required=False,
type=str,
default="./resources/ref.txt",
help="path to save res",
)
args = parser.parse_args()
main(args)
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hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/mlm_wwm/requirements.txt
|
datasets >= 1.1.3
sentencepiece != 0.1.92
protobuf
ltp
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/lxmert/visualizing_image.py
|
"""
coding=utf-8
Copyright 2018, Antonio Mendoza Hao Tan, Mohit Bansal
Adapted From Facebook Inc, Detectron2
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.import copy
"""
import colorsys
import io
import cv2
import matplotlib as mpl
import matplotlib.colors as mplc
import matplotlib.figure as mplfigure
import numpy as np
import torch
from matplotlib.backends.backend_agg import FigureCanvasAgg
from utils import img_tensorize
_SMALL_OBJ = 1000
class SingleImageViz:
def __init__(
self,
img,
scale=1.2,
edgecolor="g",
alpha=0.5,
linestyle="-",
saveas="test_out.jpg",
rgb=True,
pynb=False,
id2obj=None,
id2attr=None,
pad=0.7,
):
"""
img: an RGB image of shape (H, W, 3).
"""
if isinstance(img, torch.Tensor):
img = img.numpy().astype("np.uint8")
if isinstance(img, str):
img = img_tensorize(img)
assert isinstance(img, np.ndarray)
width, height = img.shape[1], img.shape[0]
fig = mplfigure.Figure(frameon=False)
dpi = fig.get_dpi()
width_in = (width * scale + 1e-2) / dpi
height_in = (height * scale + 1e-2) / dpi
fig.set_size_inches(width_in, height_in)
ax = fig.add_axes([0.0, 0.0, 1.0, 1.0])
ax.axis("off")
ax.set_xlim(0.0, width)
ax.set_ylim(height)
self.saveas = saveas
self.rgb = rgb
self.pynb = pynb
self.img = img
self.edgecolor = edgecolor
self.alpha = 0.5
self.linestyle = linestyle
self.font_size = int(np.sqrt(min(height, width)) * scale // 3)
self.width = width
self.height = height
self.scale = scale
self.fig = fig
self.ax = ax
self.pad = pad
self.id2obj = id2obj
self.id2attr = id2attr
self.canvas = FigureCanvasAgg(fig)
def add_box(self, box, color=None):
if color is None:
color = self.edgecolor
(x0, y0, x1, y1) = box
width = x1 - x0
height = y1 - y0
self.ax.add_patch(
mpl.patches.Rectangle(
(x0, y0),
width,
height,
fill=False,
edgecolor=color,
linewidth=self.font_size // 3,
alpha=self.alpha,
linestyle=self.linestyle,
)
)
def draw_boxes(self, boxes, obj_ids=None, obj_scores=None, attr_ids=None, attr_scores=None):
if len(boxes.shape) > 2:
boxes = boxes[0]
if len(obj_ids.shape) > 1:
obj_ids = obj_ids[0]
if len(obj_scores.shape) > 1:
obj_scores = obj_scores[0]
if len(attr_ids.shape) > 1:
attr_ids = attr_ids[0]
if len(attr_scores.shape) > 1:
attr_scores = attr_scores[0]
if isinstance(boxes, torch.Tensor):
boxes = boxes.numpy()
if isinstance(boxes, list):
boxes = np.array(boxes)
assert isinstance(boxes, np.ndarray)
areas = np.prod(boxes[:, 2:] - boxes[:, :2], axis=1)
sorted_idxs = np.argsort(-areas).tolist()
boxes = boxes[sorted_idxs] if boxes is not None else None
obj_ids = obj_ids[sorted_idxs] if obj_ids is not None else None
obj_scores = obj_scores[sorted_idxs] if obj_scores is not None else None
attr_ids = attr_ids[sorted_idxs] if attr_ids is not None else None
attr_scores = attr_scores[sorted_idxs] if attr_scores is not None else None
assigned_colors = [self._random_color(maximum=1) for _ in range(len(boxes))]
assigned_colors = [assigned_colors[idx] for idx in sorted_idxs]
if obj_ids is not None:
labels = self._create_text_labels_attr(obj_ids, obj_scores, attr_ids, attr_scores)
for i in range(len(boxes)):
color = assigned_colors[i]
self.add_box(boxes[i], color)
self.draw_labels(labels[i], boxes[i], color)
def draw_labels(self, label, box, color):
x0, y0, x1, y1 = box
text_pos = (x0, y0)
instance_area = (y1 - y0) * (x1 - x0)
small = _SMALL_OBJ * self.scale
if instance_area < small or y1 - y0 < 40 * self.scale:
if y1 >= self.height - 5:
text_pos = (x1, y0)
else:
text_pos = (x0, y1)
height_ratio = (y1 - y0) / np.sqrt(self.height * self.width)
lighter_color = self._change_color_brightness(color, brightness_factor=0.7)
font_size = np.clip((height_ratio - 0.02) / 0.08 + 1, 1.2, 2)
font_size *= 0.75 * self.font_size
self.draw_text(
text=label,
position=text_pos,
color=lighter_color,
)
def draw_text(
self,
text,
position,
color="g",
ha="left",
):
rotation = 0
font_size = self.font_size
color = np.maximum(list(mplc.to_rgb(color)), 0.2)
color[np.argmax(color)] = max(0.8, np.max(color))
bbox = {
"facecolor": "black",
"alpha": self.alpha,
"pad": self.pad,
"edgecolor": "none",
}
x, y = position
self.ax.text(
x,
y,
text,
size=font_size * self.scale,
family="sans-serif",
bbox=bbox,
verticalalignment="top",
horizontalalignment=ha,
color=color,
zorder=10,
rotation=rotation,
)
def save(self, saveas=None):
if saveas is None:
saveas = self.saveas
if saveas.lower().endswith(".jpg") or saveas.lower().endswith(".png"):
cv2.imwrite(
saveas,
self._get_buffer()[:, :, ::-1],
)
else:
self.fig.savefig(saveas)
def _create_text_labels_attr(self, classes, scores, attr_classes, attr_scores):
labels = [self.id2obj[i] for i in classes]
attr_labels = [self.id2attr[i] for i in attr_classes]
labels = [
f"{label} {score:.2f} {attr} {attr_score:.2f}"
for label, score, attr, attr_score in zip(labels, scores, attr_labels, attr_scores)
]
return labels
def _create_text_labels(self, classes, scores):
labels = [self.id2obj[i] for i in classes]
if scores is not None:
if labels is None:
labels = ["{:.0f}%".format(s * 100) for s in scores]
else:
labels = ["{} {:.0f}%".format(li, s * 100) for li, s in zip(labels, scores)]
return labels
def _random_color(self, maximum=255):
idx = np.random.randint(0, len(_COLORS))
ret = _COLORS[idx] * maximum
if not self.rgb:
ret = ret[::-1]
return ret
def _get_buffer(self):
if not self.pynb:
s, (width, height) = self.canvas.print_to_buffer()
if (width, height) != (self.width, self.height):
img = cv2.resize(self.img, (width, height))
else:
img = self.img
else:
buf = io.BytesIO() # works for cairo backend
self.canvas.print_rgba(buf)
width, height = self.width, self.height
s = buf.getvalue()
img = self.img
buffer = np.frombuffer(s, dtype="uint8")
img_rgba = buffer.reshape(height, width, 4)
rgb, alpha = np.split(img_rgba, [3], axis=2)
try:
import numexpr as ne # fuse them with numexpr
visualized_image = ne.evaluate("img * (1 - alpha / 255.0) + rgb * (alpha / 255.0)")
except ImportError:
alpha = alpha.astype("float32") / 255.0
visualized_image = img * (1 - alpha) + rgb * alpha
return visualized_image.astype("uint8")
def _change_color_brightness(self, color, brightness_factor):
assert brightness_factor >= -1.0 and brightness_factor <= 1.0
color = mplc.to_rgb(color)
polygon_color = colorsys.rgb_to_hls(*mplc.to_rgb(color))
modified_lightness = polygon_color[1] + (brightness_factor * polygon_color[1])
modified_lightness = 0.0 if modified_lightness < 0.0 else modified_lightness
modified_lightness = 1.0 if modified_lightness > 1.0 else modified_lightness
modified_color = colorsys.hls_to_rgb(polygon_color[0], modified_lightness, polygon_color[2])
return modified_color
# Color map
_COLORS = (
np.array(
[
0.000,
0.447,
0.741,
0.850,
0.325,
0.098,
0.929,
0.694,
0.125,
0.494,
0.184,
0.556,
0.466,
0.674,
0.188,
0.301,
0.745,
0.933,
0.635,
0.078,
0.184,
0.300,
0.300,
0.300,
0.600,
0.600,
0.600,
1.000,
0.000,
0.000,
1.000,
0.500,
0.000,
0.749,
0.749,
0.000,
0.000,
1.000,
0.000,
0.000,
0.000,
1.000,
0.667,
0.000,
1.000,
0.333,
0.333,
0.000,
0.333,
0.667,
0.000,
0.333,
1.000,
0.000,
0.667,
0.333,
0.000,
0.667,
0.667,
0.000,
0.667,
1.000,
0.000,
1.000,
0.333,
0.000,
1.000,
0.667,
0.000,
1.000,
1.000,
0.000,
0.000,
0.333,
0.500,
0.000,
0.667,
0.500,
0.000,
1.000,
0.500,
0.333,
0.000,
0.500,
0.333,
0.333,
0.500,
0.333,
0.667,
0.500,
0.333,
1.000,
0.500,
0.667,
0.000,
0.500,
0.667,
0.333,
0.500,
0.667,
0.667,
0.500,
0.667,
1.000,
0.500,
1.000,
0.000,
0.500,
1.000,
0.333,
0.500,
1.000,
0.667,
0.500,
1.000,
1.000,
0.500,
0.000,
0.333,
1.000,
0.000,
0.667,
1.000,
0.000,
1.000,
1.000,
0.333,
0.000,
1.000,
0.333,
0.333,
1.000,
0.333,
0.667,
1.000,
0.333,
1.000,
1.000,
0.667,
0.000,
1.000,
0.667,
0.333,
1.000,
0.667,
0.667,
1.000,
0.667,
1.000,
1.000,
1.000,
0.000,
1.000,
1.000,
0.333,
1.000,
1.000,
0.667,
1.000,
0.333,
0.000,
0.000,
0.500,
0.000,
0.000,
0.667,
0.000,
0.000,
0.833,
0.000,
0.000,
1.000,
0.000,
0.000,
0.000,
0.167,
0.000,
0.000,
0.333,
0.000,
0.000,
0.500,
0.000,
0.000,
0.667,
0.000,
0.000,
0.833,
0.000,
0.000,
1.000,
0.000,
0.000,
0.000,
0.167,
0.000,
0.000,
0.333,
0.000,
0.000,
0.500,
0.000,
0.000,
0.667,
0.000,
0.000,
0.833,
0.000,
0.000,
1.000,
0.000,
0.000,
0.000,
0.143,
0.143,
0.143,
0.857,
0.857,
0.857,
1.000,
1.000,
1.000,
]
)
.astype(np.float32)
.reshape(-1, 3)
)
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/lxmert/processing_image.py
|
"""
coding=utf-8
Copyright 2018, Antonio Mendoza Hao Tan, Mohit Bansal
Adapted From Facebook Inc, Detectron2
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.import copy
"""
import sys
from typing import Tuple
import numpy as np
import torch
from PIL import Image
from torch import nn
from transformers.image_utils import PILImageResampling
from utils import img_tensorize
class ResizeShortestEdge:
def __init__(self, short_edge_length, max_size=sys.maxsize):
"""
Args:
short_edge_length (list[min, max])
max_size (int): maximum allowed longest edge length.
"""
self.interp_method = "bilinear"
self.max_size = max_size
self.short_edge_length = short_edge_length
def __call__(self, imgs):
img_augs = []
for img in imgs:
h, w = img.shape[:2]
# later: provide list and randomly choose index for resize
size = np.random.randint(self.short_edge_length[0], self.short_edge_length[1] + 1)
if size == 0:
return img
scale = size * 1.0 / min(h, w)
if h < w:
newh, neww = size, scale * w
else:
newh, neww = scale * h, size
if max(newh, neww) > self.max_size:
scale = self.max_size * 1.0 / max(newh, neww)
newh = newh * scale
neww = neww * scale
neww = int(neww + 0.5)
newh = int(newh + 0.5)
if img.dtype == np.uint8:
pil_image = Image.fromarray(img)
pil_image = pil_image.resize((neww, newh), PILImageResampling.BILINEAR)
img = np.asarray(pil_image)
else:
img = img.permute(2, 0, 1).unsqueeze(0) # 3, 0, 1) # hw(c) -> nchw
img = nn.functional.interpolate(
img, (newh, neww), mode=self.interp_method, align_corners=False
).squeeze(0)
img_augs.append(img)
return img_augs
class Preprocess:
def __init__(self, cfg):
self.aug = ResizeShortestEdge([cfg.INPUT.MIN_SIZE_TEST, cfg.INPUT.MIN_SIZE_TEST], cfg.INPUT.MAX_SIZE_TEST)
self.input_format = cfg.INPUT.FORMAT
self.size_divisibility = cfg.SIZE_DIVISIBILITY
self.pad_value = cfg.PAD_VALUE
self.max_image_size = cfg.INPUT.MAX_SIZE_TEST
self.device = cfg.MODEL.DEVICE
self.pixel_std = torch.tensor(cfg.MODEL.PIXEL_STD).to(self.device).view(len(cfg.MODEL.PIXEL_STD), 1, 1)
self.pixel_mean = torch.tensor(cfg.MODEL.PIXEL_MEAN).to(self.device).view(len(cfg.MODEL.PIXEL_STD), 1, 1)
self.normalizer = lambda x: (x - self.pixel_mean) / self.pixel_std
def pad(self, images):
max_size = tuple(max(s) for s in zip(*[img.shape for img in images]))
image_sizes = [im.shape[-2:] for im in images]
images = [
nn.functional.pad(
im,
[0, max_size[-1] - size[1], 0, max_size[-2] - size[0]],
value=self.pad_value,
)
for size, im in zip(image_sizes, images)
]
return torch.stack(images), torch.tensor(image_sizes)
def __call__(self, images, single_image=False):
with torch.no_grad():
if not isinstance(images, list):
images = [images]
if single_image:
assert len(images) == 1
for i in range(len(images)):
if isinstance(images[i], torch.Tensor):
images.insert(i, images.pop(i).to(self.device).float())
elif not isinstance(images[i], torch.Tensor):
images.insert(
i,
torch.as_tensor(img_tensorize(images.pop(i), input_format=self.input_format))
.to(self.device)
.float(),
)
# resize smallest edge
raw_sizes = torch.tensor([im.shape[:2] for im in images])
images = self.aug(images)
# transpose images and convert to torch tensors
# images = [torch.as_tensor(i.astype("float32")).permute(2, 0, 1).to(self.device) for i in images]
# now normalize before pad to avoid useless arithmetic
images = [self.normalizer(x) for x in images]
# now pad them to do the following operations
images, sizes = self.pad(images)
# Normalize
if self.size_divisibility > 0:
raise NotImplementedError()
# pad
scales_yx = torch.true_divide(raw_sizes, sizes)
if single_image:
return images[0], sizes[0], scales_yx[0]
else:
return images, sizes, scales_yx
def _scale_box(boxes, scale_yx):
boxes[:, 0::2] *= scale_yx[:, 1]
boxes[:, 1::2] *= scale_yx[:, 0]
return boxes
def _clip_box(tensor, box_size: Tuple[int, int]):
assert torch.isfinite(tensor).all(), "Box tensor contains infinite or NaN!"
h, w = box_size
tensor[:, 0].clamp_(min=0, max=w)
tensor[:, 1].clamp_(min=0, max=h)
tensor[:, 2].clamp_(min=0, max=w)
tensor[:, 3].clamp_(min=0, max=h)
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/lxmert/README.md
|
# LXMERT DEMO
1. make a virtualenv: ``virtualenv venv`` and activate ``source venv/bin/activate``
2. install reqs: ``pip install -r ./requirements.txt``
3. usage is as shown in demo.ipynb
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/lxmert/extracting_data.py
|
import getopt
import json
import os
# import numpy as np
import sys
from collections import OrderedDict
import datasets
import numpy as np
import torch
from modeling_frcnn import GeneralizedRCNN
from processing_image import Preprocess
from utils import Config
"""
USAGE:
``python extracting_data.py -i <img_dir> -o <dataset_file>.datasets <batch_size>``
"""
TEST = False
CONFIG = Config.from_pretrained("unc-nlp/frcnn-vg-finetuned")
DEFAULT_SCHEMA = datasets.Features(
OrderedDict(
{
"attr_ids": datasets.Sequence(length=CONFIG.MAX_DETECTIONS, feature=datasets.Value("float32")),
"attr_probs": datasets.Sequence(length=CONFIG.MAX_DETECTIONS, feature=datasets.Value("float32")),
"boxes": datasets.Array2D((CONFIG.MAX_DETECTIONS, 4), dtype="float32"),
"img_id": datasets.Value("int32"),
"obj_ids": datasets.Sequence(length=CONFIG.MAX_DETECTIONS, feature=datasets.Value("float32")),
"obj_probs": datasets.Sequence(length=CONFIG.MAX_DETECTIONS, feature=datasets.Value("float32")),
"roi_features": datasets.Array2D((CONFIG.MAX_DETECTIONS, 2048), dtype="float32"),
"sizes": datasets.Sequence(length=2, feature=datasets.Value("float32")),
"preds_per_image": datasets.Value(dtype="int32"),
}
)
)
class Extract:
def __init__(self, argv=sys.argv[1:]):
inputdir = None
outputfile = None
subset_list = None
batch_size = 1
opts, args = getopt.getopt(argv, "i:o:b:s", ["inputdir=", "outfile=", "batch_size=", "subset_list="])
for opt, arg in opts:
if opt in ("-i", "--inputdir"):
inputdir = arg
elif opt in ("-o", "--outfile"):
outputfile = arg
elif opt in ("-b", "--batch_size"):
batch_size = int(arg)
elif opt in ("-s", "--subset_list"):
subset_list = arg
assert inputdir is not None # and os.path.isdir(inputdir), f"{inputdir}"
assert outputfile is not None and not os.path.isfile(outputfile), f"{outputfile}"
if subset_list is not None:
with open(os.path.realpath(subset_list)) as f:
self.subset_list = {self._vqa_file_split()[0] for x in tryload(f)}
else:
self.subset_list = None
self.config = CONFIG
if torch.cuda.is_available():
self.config.model.device = "cuda"
self.inputdir = os.path.realpath(inputdir)
self.outputfile = os.path.realpath(outputfile)
self.preprocess = Preprocess(self.config)
self.model = GeneralizedRCNN.from_pretrained("unc-nlp/frcnn-vg-finetuned", config=self.config)
self.batch = batch_size if batch_size != 0 else 1
self.schema = DEFAULT_SCHEMA
def _vqa_file_split(self, file):
img_id = int(file.split(".")[0].split("_")[-1])
filepath = os.path.join(self.inputdir, file)
return (img_id, filepath)
@property
def file_generator(self):
batch = []
for i, file in enumerate(os.listdir(self.inputdir)):
if self.subset_list is not None and i not in self.subset_list:
continue
batch.append(self._vqa_file_split(file))
if len(batch) == self.batch:
temp = batch
batch = []
yield list(map(list, zip(*temp)))
for i in range(1):
yield list(map(list, zip(*batch)))
def __call__(self):
# make writer
if not TEST:
writer = datasets.ArrowWriter(features=self.schema, path=self.outputfile)
# do file generator
for i, (img_ids, filepaths) in enumerate(self.file_generator):
images, sizes, scales_yx = self.preprocess(filepaths)
output_dict = self.model(
images,
sizes,
scales_yx=scales_yx,
padding="max_detections",
max_detections=self.config.MAX_DETECTIONS,
pad_value=0,
return_tensors="np",
location="cpu",
)
output_dict["boxes"] = output_dict.pop("normalized_boxes")
if not TEST:
output_dict["img_id"] = np.array(img_ids)
batch = self.schema.encode_batch(output_dict)
writer.write_batch(batch)
if TEST:
break
# finalizer the writer
if not TEST:
num_examples, num_bytes = writer.finalize()
print(f"Success! You wrote {num_examples} entry(s) and {num_bytes >> 20} mb")
def tryload(stream):
try:
data = json.load(stream)
try:
data = list(data.keys())
except Exception:
data = [d["img_id"] for d in data]
except Exception:
try:
data = eval(stream.read())
except Exception:
data = stream.read().split("\n")
return data
if __name__ == "__main__":
extract = Extract(sys.argv[1:])
extract()
if not TEST:
dataset = datasets.Dataset.from_file(extract.outputfile)
# wala!
# print(np.array(dataset[0:2]["roi_features"]).shape)
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/lxmert/requirements.txt
|
appdirs==1.4.3
argon2-cffi==20.1.0
async-generator==1.10
attrs==20.2.0
backcall==0.2.0
CacheControl==0.12.6
certifi==2023.7.22
cffi==1.14.2
chardet==3.0.4
click==7.1.2
colorama==0.4.3
contextlib2==0.6.0
cycler==0.10.0
datasets==1.0.0
decorator==4.4.2
defusedxml==0.6.0
dill==0.3.2
distlib==0.3.0
distro==1.4.0
entrypoints==0.3
filelock==3.0.12
future==0.18.3
html5lib==1.0.1
idna==2.8
ipaddr==2.2.0
ipykernel==5.3.4
ipython
ipython-genutils==0.2.0
ipywidgets==7.5.1
jedi==0.17.2
Jinja2>=2.11.3
joblib==1.2.0
jsonschema==3.2.0
jupyter==1.0.0
jupyter-client==6.1.7
jupyter-console==6.2.0
jupyter-core==4.6.3
jupyterlab-pygments==0.1.1
kiwisolver==1.2.0
lockfile==0.12.2
MarkupSafe==1.1.1
matplotlib==3.3.1
mistune==2.0.3
msgpack==0.6.2
nbclient==0.5.0
nbconvert==6.5.1
nbformat==5.0.7
nest-asyncio==1.4.0
notebook==6.4.12
numpy==1.22.0
opencv-python==4.4.0.42
packaging==20.3
pandas==1.1.2
pandocfilters==1.4.2
parso==0.7.1
pep517==0.8.2
pexpect==4.8.0
pickleshare==0.7.5
Pillow>=8.1.1
progress==1.5
prometheus-client==0.8.0
prompt-toolkit==3.0.7
ptyprocess==0.6.0
pyaml==20.4.0
pyarrow==1.0.1
pycparser==2.20
Pygments>=2.7.4
pyparsing==2.4.6
pyrsistent==0.16.0
python-dateutil==2.8.1
pytoml==0.1.21
pytz==2020.1
PyYAML>=5.4
pyzmq==19.0.2
qtconsole==4.7.7
QtPy==1.9.0
regex==2020.7.14
requests==2.31.0
retrying==1.3.3
sacremoses==0.0.43
Send2Trash==1.5.0
sentencepiece==0.1.91
six==1.14.0
terminado==0.8.3
testpath==0.4.4
tokenizers==0.8.1rc2
torch==1.6.0
torchvision==0.7.0
tornado==6.3.3
tqdm==4.48.2
traitlets
git+https://github.com/huggingface/transformers.git
urllib3==1.26.18
wcwidth==0.2.5
webencodings==0.5.1
wget==3.2
widgetsnbextension==3.5.1
xxhash==2.0.0
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/lxmert/utils.py
|
"""
coding=utf-8
Copyright 2018, Antonio Mendoza Hao Tan, Mohit Bansal, Huggingface team :)
Adapted From Facebook Inc, Detectron2
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.import copy
"""
import copy
import fnmatch
import json
import os
import pickle as pkl
import shutil
import sys
import tarfile
import tempfile
from collections import OrderedDict
from contextlib import contextmanager
from functools import partial
from io import BytesIO
from pathlib import Path
from urllib.parse import urlparse
from zipfile import ZipFile, is_zipfile
import cv2
import numpy as np
import requests
import wget
from filelock import FileLock
from huggingface_hub.utils import insecure_hashlib
from PIL import Image
from tqdm.auto import tqdm
from yaml import Loader, dump, load
try:
import torch
_torch_available = True
except ImportError:
_torch_available = False
try:
from torch.hub import _get_torch_home
torch_cache_home = _get_torch_home()
except ImportError:
torch_cache_home = os.path.expanduser(
os.getenv("TORCH_HOME", os.path.join(os.getenv("XDG_CACHE_HOME", "~/.cache"), "torch"))
)
default_cache_path = os.path.join(torch_cache_home, "transformers")
CLOUDFRONT_DISTRIB_PREFIX = "https://cdn.huggingface.co"
S3_BUCKET_PREFIX = "https://s3.amazonaws.com/models.huggingface.co/bert"
PATH = "/".join(str(Path(__file__).resolve()).split("/")[:-1])
CONFIG = os.path.join(PATH, "config.yaml")
ATTRIBUTES = os.path.join(PATH, "attributes.txt")
OBJECTS = os.path.join(PATH, "objects.txt")
PYTORCH_PRETRAINED_BERT_CACHE = os.getenv("PYTORCH_PRETRAINED_BERT_CACHE", default_cache_path)
PYTORCH_TRANSFORMERS_CACHE = os.getenv("PYTORCH_TRANSFORMERS_CACHE", PYTORCH_PRETRAINED_BERT_CACHE)
TRANSFORMERS_CACHE = os.getenv("TRANSFORMERS_CACHE", PYTORCH_TRANSFORMERS_CACHE)
WEIGHTS_NAME = "pytorch_model.bin"
CONFIG_NAME = "config.yaml"
def load_labels(objs=OBJECTS, attrs=ATTRIBUTES):
vg_classes = []
with open(objs) as f:
for object in f.readlines():
vg_classes.append(object.split(",")[0].lower().strip())
vg_attrs = []
with open(attrs) as f:
for object in f.readlines():
vg_attrs.append(object.split(",")[0].lower().strip())
return vg_classes, vg_attrs
def load_checkpoint(ckp):
r = OrderedDict()
with open(ckp, "rb") as f:
ckp = pkl.load(f)["model"]
for k in copy.deepcopy(list(ckp.keys())):
v = ckp.pop(k)
if isinstance(v, np.ndarray):
v = torch.tensor(v)
else:
assert isinstance(v, torch.tensor), type(v)
r[k] = v
return r
class Config:
_pointer = {}
def __init__(self, dictionary: dict, name: str = "root", level=0):
self._name = name
self._level = level
d = {}
for k, v in dictionary.items():
if v is None:
raise ValueError()
k = copy.deepcopy(k)
v = copy.deepcopy(v)
if isinstance(v, dict):
v = Config(v, name=k, level=level + 1)
d[k] = v
setattr(self, k, v)
self._pointer = d
def __repr__(self):
return str(list((self._pointer.keys())))
def __setattr__(self, key, val):
self.__dict__[key] = val
self.__dict__[key.upper()] = val
levels = key.split(".")
last_level = len(levels) - 1
pointer = self._pointer
if len(levels) > 1:
for i, l in enumerate(levels):
if hasattr(self, l) and isinstance(getattr(self, l), Config):
setattr(getattr(self, l), ".".join(levels[i:]), val)
if l == last_level:
pointer[l] = val
else:
pointer = pointer[l]
def to_dict(self):
return self._pointer
def dump_yaml(self, data, file_name):
with open(f"{file_name}", "w") as stream:
dump(data, stream)
def dump_json(self, data, file_name):
with open(f"{file_name}", "w") as stream:
json.dump(data, stream)
@staticmethod
def load_yaml(config):
with open(config) as stream:
data = load(stream, Loader=Loader)
return data
def __str__(self):
t = " "
if self._name != "root":
r = f"{t * (self._level-1)}{self._name}:\n"
else:
r = ""
level = self._level
for i, (k, v) in enumerate(self._pointer.items()):
if isinstance(v, Config):
r += f"{t * (self._level)}{v}\n"
self._level += 1
else:
r += f"{t * (self._level)}{k}: {v} ({type(v).__name__})\n"
self._level = level
return r[:-1]
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path: str, **kwargs):
config_dict, kwargs = cls.get_config_dict(pretrained_model_name_or_path, **kwargs)
return cls(config_dict)
@classmethod
def get_config_dict(cls, pretrained_model_name_or_path: str, **kwargs):
cache_dir = kwargs.pop("cache_dir", None)
force_download = kwargs.pop("force_download", False)
resume_download = kwargs.pop("resume_download", False)
proxies = kwargs.pop("proxies", None)
local_files_only = kwargs.pop("local_files_only", False)
if os.path.isdir(pretrained_model_name_or_path):
config_file = os.path.join(pretrained_model_name_or_path, CONFIG_NAME)
elif os.path.isfile(pretrained_model_name_or_path) or is_remote_url(pretrained_model_name_or_path):
config_file = pretrained_model_name_or_path
else:
config_file = hf_bucket_url(pretrained_model_name_or_path, filename=CONFIG_NAME, use_cdn=False)
try:
# Load from URL or cache if already cached
resolved_config_file = cached_path(
config_file,
cache_dir=cache_dir,
force_download=force_download,
proxies=proxies,
resume_download=resume_download,
local_files_only=local_files_only,
)
# Load config dict
if resolved_config_file is None:
raise EnvironmentError
config_file = Config.load_yaml(resolved_config_file)
except EnvironmentError:
msg = "Can't load config for"
raise EnvironmentError(msg)
if resolved_config_file == config_file:
print("loading configuration file from path")
else:
print("loading configuration file cache")
return Config.load_yaml(resolved_config_file), kwargs
# quick compare tensors
def compare(in_tensor):
out_tensor = torch.load("dump.pt", map_location=in_tensor.device)
n1 = in_tensor.numpy()
n2 = out_tensor.numpy()[0]
print(n1.shape, n1[0, 0, :5])
print(n2.shape, n2[0, 0, :5])
assert np.allclose(n1, n2, rtol=0.01, atol=0.1), (
f"{sum([1 for x in np.isclose(n1, n2, rtol=0.01, atol=0.1).flatten() if x is False])/len(n1.flatten())*100:.4f} %"
" element-wise mismatch"
)
raise Exception("tensors are all good")
# Hugging face functions below
def is_remote_url(url_or_filename):
parsed = urlparse(url_or_filename)
return parsed.scheme in ("http", "https")
def hf_bucket_url(model_id: str, filename: str, use_cdn=True) -> str:
endpoint = CLOUDFRONT_DISTRIB_PREFIX if use_cdn else S3_BUCKET_PREFIX
legacy_format = "/" not in model_id
if legacy_format:
return f"{endpoint}/{model_id}-{filename}"
else:
return f"{endpoint}/{model_id}/{filename}"
def http_get(
url,
temp_file,
proxies=None,
resume_size=0,
user_agent=None,
):
ua = "python/{}".format(sys.version.split()[0])
if _torch_available:
ua += "; torch/{}".format(torch.__version__)
if isinstance(user_agent, dict):
ua += "; " + "; ".join("{}/{}".format(k, v) for k, v in user_agent.items())
elif isinstance(user_agent, str):
ua += "; " + user_agent
headers = {"user-agent": ua}
if resume_size > 0:
headers["Range"] = "bytes=%d-" % (resume_size,)
response = requests.get(url, stream=True, proxies=proxies, headers=headers)
if response.status_code == 416: # Range not satisfiable
return
content_length = response.headers.get("Content-Length")
total = resume_size + int(content_length) if content_length is not None else None
progress = tqdm(
unit="B",
unit_scale=True,
total=total,
initial=resume_size,
desc="Downloading",
)
for chunk in response.iter_content(chunk_size=1024):
if chunk: # filter out keep-alive new chunks
progress.update(len(chunk))
temp_file.write(chunk)
progress.close()
def get_from_cache(
url,
cache_dir=None,
force_download=False,
proxies=None,
etag_timeout=10,
resume_download=False,
user_agent=None,
local_files_only=False,
):
if cache_dir is None:
cache_dir = TRANSFORMERS_CACHE
if isinstance(cache_dir, Path):
cache_dir = str(cache_dir)
os.makedirs(cache_dir, exist_ok=True)
etag = None
if not local_files_only:
try:
response = requests.head(url, allow_redirects=True, proxies=proxies, timeout=etag_timeout)
if response.status_code == 200:
etag = response.headers.get("ETag")
except (EnvironmentError, requests.exceptions.Timeout):
# etag is already None
pass
filename = url_to_filename(url, etag)
# get cache path to put the file
cache_path = os.path.join(cache_dir, filename)
# etag is None = we don't have a connection, or url doesn't exist, or is otherwise inaccessible.
# try to get the last downloaded one
if etag is None:
if os.path.exists(cache_path):
return cache_path
else:
matching_files = [
file
for file in fnmatch.filter(os.listdir(cache_dir), filename + ".*")
if not file.endswith(".json") and not file.endswith(".lock")
]
if len(matching_files) > 0:
return os.path.join(cache_dir, matching_files[-1])
else:
# If files cannot be found and local_files_only=True,
# the models might've been found if local_files_only=False
# Notify the user about that
if local_files_only:
raise ValueError(
"Cannot find the requested files in the cached path and outgoing traffic has been"
" disabled. To enable model look-ups and downloads online, set 'local_files_only'"
" to False."
)
return None
# From now on, etag is not None.
if os.path.exists(cache_path) and not force_download:
return cache_path
# Prevent parallel downloads of the same file with a lock.
lock_path = cache_path + ".lock"
with FileLock(lock_path):
# If the download just completed while the lock was activated.
if os.path.exists(cache_path) and not force_download:
# Even if returning early like here, the lock will be released.
return cache_path
if resume_download:
incomplete_path = cache_path + ".incomplete"
@contextmanager
def _resumable_file_manager():
with open(incomplete_path, "a+b") as f:
yield f
temp_file_manager = _resumable_file_manager
if os.path.exists(incomplete_path):
resume_size = os.stat(incomplete_path).st_size
else:
resume_size = 0
else:
temp_file_manager = partial(tempfile.NamedTemporaryFile, dir=cache_dir, delete=False)
resume_size = 0
# Download to temporary file, then copy to cache dir once finished.
# Otherwise you get corrupt cache entries if the download gets interrupted.
with temp_file_manager() as temp_file:
print(
"%s not found in cache or force_download set to True, downloading to %s",
url,
temp_file.name,
)
http_get(
url,
temp_file,
proxies=proxies,
resume_size=resume_size,
user_agent=user_agent,
)
os.replace(temp_file.name, cache_path)
meta = {"url": url, "etag": etag}
meta_path = cache_path + ".json"
with open(meta_path, "w") as meta_file:
json.dump(meta, meta_file)
return cache_path
def url_to_filename(url, etag=None):
url_bytes = url.encode("utf-8")
url_hash = insecure_hashlib.sha256(url_bytes)
filename = url_hash.hexdigest()
if etag:
etag_bytes = etag.encode("utf-8")
etag_hash = insecure_hashlib.sha256(etag_bytes)
filename += "." + etag_hash.hexdigest()
if url.endswith(".h5"):
filename += ".h5"
return filename
def cached_path(
url_or_filename,
cache_dir=None,
force_download=False,
proxies=None,
resume_download=False,
user_agent=None,
extract_compressed_file=False,
force_extract=False,
local_files_only=False,
):
if cache_dir is None:
cache_dir = TRANSFORMERS_CACHE
if isinstance(url_or_filename, Path):
url_or_filename = str(url_or_filename)
if isinstance(cache_dir, Path):
cache_dir = str(cache_dir)
if is_remote_url(url_or_filename):
# URL, so get it from the cache (downloading if necessary)
output_path = get_from_cache(
url_or_filename,
cache_dir=cache_dir,
force_download=force_download,
proxies=proxies,
resume_download=resume_download,
user_agent=user_agent,
local_files_only=local_files_only,
)
elif os.path.exists(url_or_filename):
# File, and it exists.
output_path = url_or_filename
elif urlparse(url_or_filename).scheme == "":
# File, but it doesn't exist.
raise EnvironmentError("file {} not found".format(url_or_filename))
else:
# Something unknown
raise ValueError("unable to parse {} as a URL or as a local path".format(url_or_filename))
if extract_compressed_file:
if not is_zipfile(output_path) and not tarfile.is_tarfile(output_path):
return output_path
# Path where we extract compressed archives
# We avoid '.' in dir name and add "-extracted" at the end: "./model.zip" => "./model-zip-extracted/"
output_dir, output_file = os.path.split(output_path)
output_extract_dir_name = output_file.replace(".", "-") + "-extracted"
output_path_extracted = os.path.join(output_dir, output_extract_dir_name)
if os.path.isdir(output_path_extracted) and os.listdir(output_path_extracted) and not force_extract:
return output_path_extracted
# Prevent parallel extractions
lock_path = output_path + ".lock"
with FileLock(lock_path):
shutil.rmtree(output_path_extracted, ignore_errors=True)
os.makedirs(output_path_extracted)
if is_zipfile(output_path):
with ZipFile(output_path, "r") as zip_file:
zip_file.extractall(output_path_extracted)
zip_file.close()
elif tarfile.is_tarfile(output_path):
tar_file = tarfile.open(output_path)
tar_file.extractall(output_path_extracted)
tar_file.close()
else:
raise EnvironmentError("Archive format of {} could not be identified".format(output_path))
return output_path_extracted
return output_path
def get_data(query, delim=","):
assert isinstance(query, str)
if os.path.isfile(query):
with open(query) as f:
data = eval(f.read())
else:
req = requests.get(query)
try:
data = requests.json()
except Exception:
data = req.content.decode()
assert data is not None, "could not connect"
try:
data = eval(data)
except Exception:
data = data.split("\n")
req.close()
return data
def get_image_from_url(url):
response = requests.get(url)
img = np.array(Image.open(BytesIO(response.content)))
return img
# to load legacy frcnn checkpoint from detectron
def load_frcnn_pkl_from_url(url):
fn = url.split("/")[-1]
if fn not in os.listdir(os.getcwd()):
wget.download(url)
with open(fn, "rb") as stream:
weights = pkl.load(stream)
model = weights.pop("model")
new = {}
for k, v in model.items():
new[k] = torch.from_numpy(v)
if "running_var" in k:
zero = torch.tensor([0])
k2 = k.replace("running_var", "num_batches_tracked")
new[k2] = zero
return new
def get_demo_path():
print(f"{os.path.abspath(os.path.join(PATH, os.pardir))}/demo.ipynb")
def img_tensorize(im, input_format="RGB"):
assert isinstance(im, str)
if os.path.isfile(im):
img = cv2.imread(im)
else:
img = get_image_from_url(im)
assert img is not None, f"could not connect to: {im}"
img = cv2.cvtColor(img, cv2.COLOR_BGR2RGB)
if input_format == "RGB":
img = img[:, :, ::-1]
return img
def chunk(images, batch=1):
return (images[i : i + batch] for i in range(0, len(images), batch))
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/lxmert/modeling_frcnn.py
|
"""
coding=utf-8
Copyright 2018, Antonio Mendoza Hao Tan, Mohit Bansal
Adapted From Facebook Inc, Detectron2 && Huggingface Co.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.import copy
"""
import itertools
import math
import os
from abc import ABCMeta, abstractmethod
from collections import OrderedDict, namedtuple
from typing import Dict, List, Tuple
import numpy as np
import torch
from torch import nn
from torch.nn.modules.batchnorm import BatchNorm2d
from torchvision.ops import RoIPool
from torchvision.ops.boxes import batched_nms, nms
from utils import WEIGHTS_NAME, Config, cached_path, hf_bucket_url, is_remote_url, load_checkpoint
# other:
def norm_box(boxes, raw_sizes):
if not isinstance(boxes, torch.Tensor):
normalized_boxes = boxes.copy()
else:
normalized_boxes = boxes.clone()
normalized_boxes[:, :, (0, 2)] /= raw_sizes[:, 1]
normalized_boxes[:, :, (1, 3)] /= raw_sizes[:, 0]
return normalized_boxes
def pad_list_tensors(
list_tensors,
preds_per_image,
max_detections=None,
return_tensors=None,
padding=None,
pad_value=0,
location=None,
):
"""
location will always be cpu for np tensors
"""
if location is None:
location = "cpu"
assert return_tensors in {"pt", "np", None}
assert padding in {"max_detections", "max_batch", None}
new = []
if padding is None:
if return_tensors is None:
return list_tensors
elif return_tensors == "pt":
if not isinstance(list_tensors, torch.Tensor):
return torch.stack(list_tensors).to(location)
else:
return list_tensors.to(location)
else:
if not isinstance(list_tensors, list):
return np.array(list_tensors.to(location))
else:
return list_tensors.to(location)
if padding == "max_detections":
assert max_detections is not None, "specify max number of detections per batch"
elif padding == "max_batch":
max_detections = max(preds_per_image)
for i in range(len(list_tensors)):
too_small = False
tensor_i = list_tensors.pop(0)
if tensor_i.ndim < 2:
too_small = True
tensor_i = tensor_i.unsqueeze(-1)
assert isinstance(tensor_i, torch.Tensor)
tensor_i = nn.functional.pad(
input=tensor_i,
pad=(0, 0, 0, max_detections - preds_per_image[i]),
mode="constant",
value=pad_value,
)
if too_small:
tensor_i = tensor_i.squeeze(-1)
if return_tensors is None:
if location == "cpu":
tensor_i = tensor_i.cpu()
tensor_i = tensor_i.tolist()
if return_tensors == "np":
if location == "cpu":
tensor_i = tensor_i.cpu()
tensor_i = tensor_i.numpy()
else:
if location == "cpu":
tensor_i = tensor_i.cpu()
new.append(tensor_i)
if return_tensors == "np":
return np.stack(new, axis=0)
elif return_tensors == "pt" and not isinstance(new, torch.Tensor):
return torch.stack(new, dim=0)
else:
return list_tensors
def do_nms(boxes, scores, image_shape, score_thresh, nms_thresh, mind, maxd):
scores = scores[:, :-1]
num_bbox_reg_classes = boxes.shape[1] // 4
# Convert to Boxes to use the `clip` function ...
boxes = boxes.reshape(-1, 4)
_clip_box(boxes, image_shape)
boxes = boxes.view(-1, num_bbox_reg_classes, 4) # R x C x 4
# Select max scores
max_scores, max_classes = scores.max(1) # R x C --> R
num_objs = boxes.size(0)
boxes = boxes.view(-1, 4)
idxs = torch.arange(num_objs).to(boxes.device) * num_bbox_reg_classes + max_classes
max_boxes = boxes[idxs] # Select max boxes according to the max scores.
# Apply NMS
keep = nms(max_boxes, max_scores, nms_thresh)
keep = keep[:maxd]
if keep.shape[-1] >= mind and keep.shape[-1] <= maxd:
max_boxes, max_scores = max_boxes[keep], max_scores[keep]
classes = max_classes[keep]
return max_boxes, max_scores, classes, keep
else:
return None
# Helper Functions
def _clip_box(tensor, box_size: Tuple[int, int]):
assert torch.isfinite(tensor).all(), "Box tensor contains infinite or NaN!"
h, w = box_size
tensor[:, 0].clamp_(min=0, max=w)
tensor[:, 1].clamp_(min=0, max=h)
tensor[:, 2].clamp_(min=0, max=w)
tensor[:, 3].clamp_(min=0, max=h)
def _nonempty_boxes(box, threshold: float = 0.0) -> torch.Tensor:
widths = box[:, 2] - box[:, 0]
heights = box[:, 3] - box[:, 1]
keep = (widths > threshold) & (heights > threshold)
return keep
def get_norm(norm, out_channels):
if isinstance(norm, str):
if len(norm) == 0:
return None
norm = {
"BN": BatchNorm2d,
"GN": lambda channels: nn.GroupNorm(32, channels),
"nnSyncBN": nn.SyncBatchNorm, # keep for debugging
"": lambda x: x,
}[norm]
return norm(out_channels)
def _create_grid_offsets(size: List[int], stride: int, offset: float, device):
grid_height, grid_width = size
shifts_x = torch.arange(
offset * stride,
grid_width * stride,
step=stride,
dtype=torch.float32,
device=device,
)
shifts_y = torch.arange(
offset * stride,
grid_height * stride,
step=stride,
dtype=torch.float32,
device=device,
)
shift_y, shift_x = torch.meshgrid(shifts_y, shifts_x)
shift_x = shift_x.reshape(-1)
shift_y = shift_y.reshape(-1)
return shift_x, shift_y
def build_backbone(cfg):
input_shape = ShapeSpec(channels=len(cfg.MODEL.PIXEL_MEAN))
norm = cfg.RESNETS.NORM
stem = BasicStem(
in_channels=input_shape.channels,
out_channels=cfg.RESNETS.STEM_OUT_CHANNELS,
norm=norm,
caffe_maxpool=cfg.MODEL.MAX_POOL,
)
freeze_at = cfg.BACKBONE.FREEZE_AT
if freeze_at >= 1:
for p in stem.parameters():
p.requires_grad = False
out_features = cfg.RESNETS.OUT_FEATURES
depth = cfg.RESNETS.DEPTH
num_groups = cfg.RESNETS.NUM_GROUPS
width_per_group = cfg.RESNETS.WIDTH_PER_GROUP
bottleneck_channels = num_groups * width_per_group
in_channels = cfg.RESNETS.STEM_OUT_CHANNELS
out_channels = cfg.RESNETS.RES2_OUT_CHANNELS
stride_in_1x1 = cfg.RESNETS.STRIDE_IN_1X1
res5_dilation = cfg.RESNETS.RES5_DILATION
assert res5_dilation in {1, 2}, "res5_dilation cannot be {}.".format(res5_dilation)
num_blocks_per_stage = {50: [3, 4, 6, 3], 101: [3, 4, 23, 3], 152: [3, 8, 36, 3]}[depth]
stages = []
out_stage_idx = [{"res2": 2, "res3": 3, "res4": 4, "res5": 5}[f] for f in out_features]
max_stage_idx = max(out_stage_idx)
for idx, stage_idx in enumerate(range(2, max_stage_idx + 1)):
dilation = res5_dilation if stage_idx == 5 else 1
first_stride = 1 if idx == 0 or (stage_idx == 5 and dilation == 2) else 2
stage_kargs = {
"num_blocks": num_blocks_per_stage[idx],
"first_stride": first_stride,
"in_channels": in_channels,
"bottleneck_channels": bottleneck_channels,
"out_channels": out_channels,
"num_groups": num_groups,
"norm": norm,
"stride_in_1x1": stride_in_1x1,
"dilation": dilation,
}
stage_kargs["block_class"] = BottleneckBlock
blocks = ResNet.make_stage(**stage_kargs)
in_channels = out_channels
out_channels *= 2
bottleneck_channels *= 2
if freeze_at >= stage_idx:
for block in blocks:
block.freeze()
stages.append(blocks)
return ResNet(stem, stages, out_features=out_features)
def find_top_rpn_proposals(
proposals,
pred_objectness_logits,
images,
image_sizes,
nms_thresh,
pre_nms_topk,
post_nms_topk,
min_box_side_len,
training,
):
"""Args:
proposals (list[Tensor]): (L, N, Hi*Wi*A, 4).
pred_objectness_logits: tensors of length L.
nms_thresh (float): IoU threshold to use for NMS
pre_nms_topk (int): before nms
post_nms_topk (int): after nms
min_box_side_len (float): minimum proposal box side
training (bool): True if proposals are to be used in training,
Returns:
results (List[Dict]): stores post_nms_topk object proposals for image i.
"""
num_images = len(images)
device = proposals[0].device
# 1. Select top-k anchor for every level and every image
topk_scores = [] # #lvl Tensor, each of shape N x topk
topk_proposals = []
level_ids = [] # #lvl Tensor, each of shape (topk,)
batch_idx = torch.arange(num_images, device=device)
for level_id, proposals_i, logits_i in zip(itertools.count(), proposals, pred_objectness_logits):
Hi_Wi_A = logits_i.shape[1]
num_proposals_i = min(pre_nms_topk, Hi_Wi_A)
# sort is faster than topk (https://github.com/pytorch/pytorch/issues/22812)
# topk_scores_i, topk_idx = logits_i.topk(num_proposals_i, dim=1)
logits_i, idx = logits_i.sort(descending=True, dim=1)
topk_scores_i = logits_i[batch_idx, :num_proposals_i]
topk_idx = idx[batch_idx, :num_proposals_i]
# each is N x topk
topk_proposals_i = proposals_i[batch_idx[:, None], topk_idx] # N x topk x 4
topk_proposals.append(topk_proposals_i)
topk_scores.append(topk_scores_i)
level_ids.append(torch.full((num_proposals_i,), level_id, dtype=torch.int64, device=device))
# 2. Concat all levels together
topk_scores = torch.cat(topk_scores, dim=1)
topk_proposals = torch.cat(topk_proposals, dim=1)
level_ids = torch.cat(level_ids, dim=0)
# if I change to batched_nms, I wonder if this will make a difference
# 3. For each image, run a per-level NMS, and choose topk results.
results = []
for n, image_size in enumerate(image_sizes):
boxes = topk_proposals[n]
scores_per_img = topk_scores[n]
# I will have to take a look at the boxes clip method
_clip_box(boxes, image_size)
# filter empty boxes
keep = _nonempty_boxes(boxes, threshold=min_box_side_len)
lvl = level_ids
if keep.sum().item() != len(boxes):
boxes, scores_per_img, lvl = (
boxes[keep],
scores_per_img[keep],
level_ids[keep],
)
keep = batched_nms(boxes, scores_per_img, lvl, nms_thresh)
keep = keep[:post_nms_topk]
res = (boxes[keep], scores_per_img[keep])
results.append(res)
# I wonder if it would be possible for me to pad all these things.
return results
def subsample_labels(labels, num_samples, positive_fraction, bg_label):
"""
Returns:
pos_idx, neg_idx (Tensor):
1D vector of indices. The total length of both is `num_samples` or fewer.
"""
positive = torch.nonzero((labels != -1) & (labels != bg_label)).squeeze(1)
negative = torch.nonzero(labels == bg_label).squeeze(1)
num_pos = int(num_samples * positive_fraction)
# protect against not enough positive examples
num_pos = min(positive.numel(), num_pos)
num_neg = num_samples - num_pos
# protect against not enough negative examples
num_neg = min(negative.numel(), num_neg)
# randomly select positive and negative examples
perm1 = torch.randperm(positive.numel(), device=positive.device)[:num_pos]
perm2 = torch.randperm(negative.numel(), device=negative.device)[:num_neg]
pos_idx = positive[perm1]
neg_idx = negative[perm2]
return pos_idx, neg_idx
def add_ground_truth_to_proposals(gt_boxes, proposals):
raise NotImplementedError()
def add_ground_truth_to_proposals_single_image(gt_boxes, proposals):
raise NotImplementedError()
def _fmt_box_list(box_tensor, batch_index: int):
repeated_index = torch.full(
(len(box_tensor), 1),
batch_index,
dtype=box_tensor.dtype,
device=box_tensor.device,
)
return torch.cat((repeated_index, box_tensor), dim=1)
def convert_boxes_to_pooler_format(box_lists: List[torch.Tensor]):
pooler_fmt_boxes = torch.cat(
[_fmt_box_list(box_list, i) for i, box_list in enumerate(box_lists)],
dim=0,
)
return pooler_fmt_boxes
def assign_boxes_to_levels(
box_lists: List[torch.Tensor],
min_level: int,
max_level: int,
canonical_box_size: int,
canonical_level: int,
):
box_sizes = torch.sqrt(torch.cat([boxes.area() for boxes in box_lists]))
# Eqn.(1) in FPN paper
level_assignments = torch.floor(canonical_level + torch.log2(box_sizes / canonical_box_size + 1e-8))
# clamp level to (min, max), in case the box size is too large or too small
# for the available feature maps
level_assignments = torch.clamp(level_assignments, min=min_level, max=max_level)
return level_assignments.to(torch.int64) - min_level
# Helper Classes
class _NewEmptyTensorOp(torch.autograd.Function):
@staticmethod
def forward(ctx, x, new_shape):
ctx.shape = x.shape
return x.new_empty(new_shape)
@staticmethod
def backward(ctx, grad):
shape = ctx.shape
return _NewEmptyTensorOp.apply(grad, shape), None
class ShapeSpec(namedtuple("_ShapeSpec", ["channels", "height", "width", "stride"])):
def __new__(cls, *, channels=None, height=None, width=None, stride=None):
return super().__new__(cls, channels, height, width, stride)
class Box2BoxTransform(object):
"""
This R-CNN transformation scales the box's width and height
by exp(dw), exp(dh) and shifts a box's center by the offset
(dx * width, dy * height).
"""
def __init__(self, weights: Tuple[float, float, float, float], scale_clamp: float = None):
"""
Args:
weights (4-element tuple): Scaling factors that are applied to the
(dx, dy, dw, dh) deltas. In Fast R-CNN, these were originally set
such that the deltas have unit variance; now they are treated as
hyperparameters of the system.
scale_clamp (float): When predicting deltas, the predicted box scaling
factors (dw and dh) are clamped such that they are <= scale_clamp.
"""
self.weights = weights
if scale_clamp is not None:
self.scale_clamp = scale_clamp
else:
"""
Value for clamping large dw and dh predictions.
The heuristic is that we clamp such that dw and dh are no larger
than what would transform a 16px box into a 1000px box
(based on a small anchor, 16px, and a typical image size, 1000px).
"""
self.scale_clamp = math.log(1000.0 / 16)
def get_deltas(self, src_boxes, target_boxes):
"""
Get box regression transformation deltas (dx, dy, dw, dh) that can be used
to transform the `src_boxes` into the `target_boxes`. That is, the relation
``target_boxes == self.apply_deltas(deltas, src_boxes)`` is true (unless
any delta is too large and is clamped).
Args:
src_boxes (Tensor): source boxes, e.g., object proposals
target_boxes (Tensor): target of the transformation, e.g., ground-truth
boxes.
"""
assert isinstance(src_boxes, torch.Tensor), type(src_boxes)
assert isinstance(target_boxes, torch.Tensor), type(target_boxes)
src_widths = src_boxes[:, 2] - src_boxes[:, 0]
src_heights = src_boxes[:, 3] - src_boxes[:, 1]
src_ctr_x = src_boxes[:, 0] + 0.5 * src_widths
src_ctr_y = src_boxes[:, 1] + 0.5 * src_heights
target_widths = target_boxes[:, 2] - target_boxes[:, 0]
target_heights = target_boxes[:, 3] - target_boxes[:, 1]
target_ctr_x = target_boxes[:, 0] + 0.5 * target_widths
target_ctr_y = target_boxes[:, 1] + 0.5 * target_heights
wx, wy, ww, wh = self.weights
dx = wx * (target_ctr_x - src_ctr_x) / src_widths
dy = wy * (target_ctr_y - src_ctr_y) / src_heights
dw = ww * torch.log(target_widths / src_widths)
dh = wh * torch.log(target_heights / src_heights)
deltas = torch.stack((dx, dy, dw, dh), dim=1)
assert (src_widths > 0).all().item(), "Input boxes to Box2BoxTransform are not valid!"
return deltas
def apply_deltas(self, deltas, boxes):
"""
Apply transformation `deltas` (dx, dy, dw, dh) to `boxes`.
Args:
deltas (Tensor): transformation deltas of shape (N, k*4), where k >= 1.
deltas[i] represents k potentially different class-specific
box transformations for the single box boxes[i].
boxes (Tensor): boxes to transform, of shape (N, 4)
"""
boxes = boxes.to(deltas.dtype)
widths = boxes[:, 2] - boxes[:, 0]
heights = boxes[:, 3] - boxes[:, 1]
ctr_x = boxes[:, 0] + 0.5 * widths
ctr_y = boxes[:, 1] + 0.5 * heights
wx, wy, ww, wh = self.weights
dx = deltas[:, 0::4] / wx
dy = deltas[:, 1::4] / wy
dw = deltas[:, 2::4] / ww
dh = deltas[:, 3::4] / wh
# Prevent sending too large values into torch.exp()
dw = torch.clamp(dw, max=self.scale_clamp)
dh = torch.clamp(dh, max=self.scale_clamp)
pred_ctr_x = dx * widths[:, None] + ctr_x[:, None]
pred_ctr_y = dy * heights[:, None] + ctr_y[:, None]
pred_w = torch.exp(dw) * widths[:, None]
pred_h = torch.exp(dh) * heights[:, None]
pred_boxes = torch.zeros_like(deltas)
pred_boxes[:, 0::4] = pred_ctr_x - 0.5 * pred_w # x1
pred_boxes[:, 1::4] = pred_ctr_y - 0.5 * pred_h # y1
pred_boxes[:, 2::4] = pred_ctr_x + 0.5 * pred_w # x2
pred_boxes[:, 3::4] = pred_ctr_y + 0.5 * pred_h # y2
return pred_boxes
class Matcher(object):
"""
This class assigns to each predicted "element" (e.g., a box) a ground-truth
element. Each predicted element will have exactly zero or one matches; each
ground-truth element may be matched to zero or more predicted elements.
The matching is determined by the MxN match_quality_matrix, that characterizes
how well each (ground-truth, prediction)-pair match each other. For example,
if the elements are boxes, this matrix may contain box intersection-over-union
overlap values.
The matcher returns (a) a vector of length N containing the index of the
ground-truth element m in [0, M) that matches to prediction n in [0, N).
(b) a vector of length N containing the labels for each prediction.
"""
def __init__(
self,
thresholds: List[float],
labels: List[int],
allow_low_quality_matches: bool = False,
):
"""
Args:
thresholds (list): a list of thresholds used to stratify predictions
into levels.
labels (list): a list of values to label predictions belonging at
each level. A label can be one of {-1, 0, 1} signifying
{ignore, negative class, positive class}, respectively.
allow_low_quality_matches (bool): if True, produce additional matches or predictions with maximum match quality lower than high_threshold.
For example, thresholds = [0.3, 0.5] labels = [0, -1, 1] All predictions with iou < 0.3 will be marked with 0 and
thus will be considered as false positives while training. All predictions with 0.3 <= iou < 0.5 will be marked with -1 and
thus will be ignored. All predictions with 0.5 <= iou will be marked with 1 and thus will be considered as true positives.
"""
thresholds = thresholds[:]
assert thresholds[0] > 0
thresholds.insert(0, -float("inf"))
thresholds.append(float("inf"))
assert all(low <= high for (low, high) in zip(thresholds[:-1], thresholds[1:]))
assert all(label_i in [-1, 0, 1] for label_i in labels)
assert len(labels) == len(thresholds) - 1
self.thresholds = thresholds
self.labels = labels
self.allow_low_quality_matches = allow_low_quality_matches
def __call__(self, match_quality_matrix):
"""
Args:
match_quality_matrix (Tensor[float]): an MxN tensor, containing the pairwise quality between M ground-truth elements and N predicted
elements. All elements must be >= 0 (due to the us of `torch.nonzero` for selecting indices in :meth:`set_low_quality_matches_`).
Returns:
matches (Tensor[int64]): a vector of length N, where matches[i] is a matched ground-truth index in [0, M)
match_labels (Tensor[int8]): a vector of length N, where pred_labels[i] indicates true or false positive or ignored
"""
assert match_quality_matrix.dim() == 2
if match_quality_matrix.numel() == 0:
default_matches = match_quality_matrix.new_full((match_quality_matrix.size(1),), 0, dtype=torch.int64)
# When no gt boxes exist, we define IOU = 0 and therefore set labels
# to `self.labels[0]`, which usually defaults to background class 0
# To choose to ignore instead,
# can make labels=[-1,0,-1,1] + set appropriate thresholds
default_match_labels = match_quality_matrix.new_full(
(match_quality_matrix.size(1),), self.labels[0], dtype=torch.int8
)
return default_matches, default_match_labels
assert torch.all(match_quality_matrix >= 0)
# match_quality_matrix is M (gt) x N (predicted)
# Max over gt elements (dim 0) to find best gt candidate for each prediction
matched_vals, matches = match_quality_matrix.max(dim=0)
match_labels = matches.new_full(matches.size(), 1, dtype=torch.int8)
for l, low, high in zip(self.labels, self.thresholds[:-1], self.thresholds[1:]):
low_high = (matched_vals >= low) & (matched_vals < high)
match_labels[low_high] = l
if self.allow_low_quality_matches:
self.set_low_quality_matches_(match_labels, match_quality_matrix)
return matches, match_labels
def set_low_quality_matches_(self, match_labels, match_quality_matrix):
"""
Produce additional matches for predictions that have only low-quality matches.
Specifically, for each ground-truth G find the set of predictions that have
maximum overlap with it (including ties); for each prediction in that set, if
it is unmatched, then match it to the ground-truth G.
This function implements the RPN assignment case (i)
in Sec. 3.1.2 of Faster R-CNN.
"""
# For each gt, find the prediction with which it has highest quality
highest_quality_foreach_gt, _ = match_quality_matrix.max(dim=1)
# Find the highest quality match available, even if it is low, including ties.
# Note that the matches qualities must be positive due to the use of
# `torch.nonzero`.
of_quality_inds = match_quality_matrix == highest_quality_foreach_gt[:, None]
if of_quality_inds.dim() == 0:
(_, pred_inds_with_highest_quality) = of_quality_inds.unsqueeze(0).nonzero().unbind(1)
else:
(_, pred_inds_with_highest_quality) = of_quality_inds.nonzero().unbind(1)
match_labels[pred_inds_with_highest_quality] = 1
class RPNOutputs(object):
def __init__(
self,
box2box_transform,
anchor_matcher,
batch_size_per_image,
positive_fraction,
images,
pred_objectness_logits,
pred_anchor_deltas,
anchors,
boundary_threshold=0,
gt_boxes=None,
smooth_l1_beta=0.0,
):
"""
Args:
box2box_transform (Box2BoxTransform): :class:`Box2BoxTransform` instance for anchor-proposal transformations.
anchor_matcher (Matcher): :class:`Matcher` instance for matching anchors to ground-truth boxes; used to determine training labels.
batch_size_per_image (int): number of proposals to sample when training
positive_fraction (float): target fraction of sampled proposals that should be positive
images (ImageList): :class:`ImageList` instance representing N input images
pred_objectness_logits (list[Tensor]): A list of L elements. Element i is a tensor of shape (N, A, Hi, W)
pred_anchor_deltas (list[Tensor]): A list of L elements. Element i is a tensor of shape (N, A*4, Hi, Wi)
anchors (list[torch.Tensor]): nested list of boxes. anchors[i][j] at (n, l) stores anchor array for feature map l
boundary_threshold (int): if >= 0, then anchors that extend beyond the image boundary by more than boundary_thresh are not used in training.
gt_boxes (list[Boxes], optional): A list of N elements.
smooth_l1_beta (float): The transition point between L1 and L2 lossn. When set to 0, the loss becomes L1. When +inf, it is ignored
"""
self.box2box_transform = box2box_transform
self.anchor_matcher = anchor_matcher
self.batch_size_per_image = batch_size_per_image
self.positive_fraction = positive_fraction
self.pred_objectness_logits = pred_objectness_logits
self.pred_anchor_deltas = pred_anchor_deltas
self.anchors = anchors
self.gt_boxes = gt_boxes
self.num_feature_maps = len(pred_objectness_logits)
self.num_images = len(images)
self.boundary_threshold = boundary_threshold
self.smooth_l1_beta = smooth_l1_beta
def _get_ground_truth(self):
raise NotImplementedError()
def predict_proposals(self):
# pred_anchor_deltas: (L, N, ? Hi, Wi)
# anchors:(N, L, -1, B)
# here we loop over specific feature map, NOT images
proposals = []
anchors = self.anchors.transpose(0, 1)
for anchors_i, pred_anchor_deltas_i in zip(anchors, self.pred_anchor_deltas):
B = anchors_i.size(-1)
N, _, Hi, Wi = pred_anchor_deltas_i.shape
anchors_i = anchors_i.flatten(start_dim=0, end_dim=1)
pred_anchor_deltas_i = pred_anchor_deltas_i.view(N, -1, B, Hi, Wi).permute(0, 3, 4, 1, 2).reshape(-1, B)
proposals_i = self.box2box_transform.apply_deltas(pred_anchor_deltas_i, anchors_i)
# Append feature map proposals with shape (N, Hi*Wi*A, B)
proposals.append(proposals_i.view(N, -1, B))
proposals = torch.stack(proposals)
return proposals
def predict_objectness_logits(self):
"""
Returns:
pred_objectness_logits (list[Tensor]) -> (N, Hi*Wi*A).
"""
pred_objectness_logits = [
# Reshape: (N, A, Hi, Wi) -> (N, Hi, Wi, A) -> (N, Hi*Wi*A)
score.permute(0, 2, 3, 1).reshape(self.num_images, -1)
for score in self.pred_objectness_logits
]
return pred_objectness_logits
# Main Classes
class Conv2d(nn.Conv2d):
def __init__(self, *args, **kwargs):
norm = kwargs.pop("norm", None)
activation = kwargs.pop("activation", None)
super().__init__(*args, **kwargs)
self.norm = norm
self.activation = activation
def forward(self, x):
if x.numel() == 0 and self.training:
assert not isinstance(self.norm, nn.SyncBatchNorm)
if x.numel() == 0:
assert not isinstance(self.norm, nn.GroupNorm)
output_shape = [
(i + 2 * p - (di * (k - 1) + 1)) // s + 1
for i, p, di, k, s in zip(
x.shape[-2:],
self.padding,
self.dilation,
self.kernel_size,
self.stride,
)
]
output_shape = [x.shape[0], self.weight.shape[0]] + output_shape
empty = _NewEmptyTensorOp.apply(x, output_shape)
if self.training:
_dummy = sum(x.view(-1)[0] for x in self.parameters()) * 0.0
return empty + _dummy
else:
return empty
x = super().forward(x)
if self.norm is not None:
x = self.norm(x)
if self.activation is not None:
x = self.activation(x)
return x
class LastLevelMaxPool(nn.Module):
"""
This module is used in the original FPN to generate a downsampled P6 feature from P5.
"""
def __init__(self):
super().__init__()
self.num_levels = 1
self.in_feature = "p5"
def forward(self, x):
return [nn.functional.max_pool2d(x, kernel_size=1, stride=2, padding=0)]
class LastLevelP6P7(nn.Module):
"""
This module is used in RetinaNet to generate extra layers, P6 and P7 from C5 feature.
"""
def __init__(self, in_channels, out_channels):
super().__init__()
self.num_levels = 2
self.in_feature = "res5"
self.p6 = nn.Conv2d(in_channels, out_channels, 3, 2, 1)
self.p7 = nn.Conv2d(out_channels, out_channels, 3, 2, 1)
def forward(self, c5):
p6 = self.p6(c5)
p7 = self.p7(nn.functional.relu(p6))
return [p6, p7]
class BasicStem(nn.Module):
def __init__(self, in_channels=3, out_channels=64, norm="BN", caffe_maxpool=False):
super().__init__()
self.conv1 = Conv2d(
in_channels,
out_channels,
kernel_size=7,
stride=2,
padding=3,
bias=False,
norm=get_norm(norm, out_channels),
)
self.caffe_maxpool = caffe_maxpool
# use pad 1 instead of pad zero
def forward(self, x):
x = self.conv1(x)
x = nn.functional.relu_(x)
if self.caffe_maxpool:
x = nn.functional.max_pool2d(x, kernel_size=3, stride=2, padding=0, ceil_mode=True)
else:
x = nn.functional.max_pool2d(x, kernel_size=3, stride=2, padding=1)
return x
@property
def out_channels(self):
return self.conv1.out_channels
@property
def stride(self):
return 4 # = stride 2 conv -> stride 2 max pool
class ResNetBlockBase(nn.Module):
def __init__(self, in_channels, out_channels, stride):
super().__init__()
self.in_channels = in_channels
self.out_channels = out_channels
self.stride = stride
def freeze(self):
for p in self.parameters():
p.requires_grad = False
return self
class BottleneckBlock(ResNetBlockBase):
def __init__(
self,
in_channels,
out_channels,
bottleneck_channels,
stride=1,
num_groups=1,
norm="BN",
stride_in_1x1=False,
dilation=1,
):
super().__init__(in_channels, out_channels, stride)
if in_channels != out_channels:
self.shortcut = Conv2d(
in_channels,
out_channels,
kernel_size=1,
stride=stride,
bias=False,
norm=get_norm(norm, out_channels),
)
else:
self.shortcut = None
# The original MSRA ResNet models have stride in the first 1x1 conv
# The subsequent fb.torch.resnet and Caffe2 ResNe[X]t implementations have
# stride in the 3x3 conv
stride_1x1, stride_3x3 = (stride, 1) if stride_in_1x1 else (1, stride)
self.conv1 = Conv2d(
in_channels,
bottleneck_channels,
kernel_size=1,
stride=stride_1x1,
bias=False,
norm=get_norm(norm, bottleneck_channels),
)
self.conv2 = Conv2d(
bottleneck_channels,
bottleneck_channels,
kernel_size=3,
stride=stride_3x3,
padding=1 * dilation,
bias=False,
groups=num_groups,
dilation=dilation,
norm=get_norm(norm, bottleneck_channels),
)
self.conv3 = Conv2d(
bottleneck_channels,
out_channels,
kernel_size=1,
bias=False,
norm=get_norm(norm, out_channels),
)
def forward(self, x):
out = self.conv1(x)
out = nn.functional.relu_(out)
out = self.conv2(out)
out = nn.functional.relu_(out)
out = self.conv3(out)
if self.shortcut is not None:
shortcut = self.shortcut(x)
else:
shortcut = x
out += shortcut
out = nn.functional.relu_(out)
return out
class Backbone(nn.Module, metaclass=ABCMeta):
def __init__(self):
super().__init__()
@abstractmethod
def forward(self):
pass
@property
def size_divisibility(self):
"""
Some backbones require the input height and width to be divisible by a specific integer. This is
typically true for encoder / decoder type networks with lateral connection (e.g., FPN) for which feature maps need to match
dimension in the "bottom up" and "top down" paths. Set to 0 if no specific input size divisibility is required.
"""
return 0
def output_shape(self):
return {
name: ShapeSpec(
channels=self._out_feature_channels[name],
stride=self._out_feature_strides[name],
)
for name in self._out_features
}
@property
def out_features(self):
"""deprecated"""
return self._out_features
@property
def out_feature_strides(self):
"""deprecated"""
return {f: self._out_feature_strides[f] for f in self._out_features}
@property
def out_feature_channels(self):
"""deprecated"""
return {f: self._out_feature_channels[f] for f in self._out_features}
class ResNet(Backbone):
def __init__(self, stem, stages, num_classes=None, out_features=None):
"""
Args:
stem (nn.Module): a stem module
stages (list[list[ResNetBlock]]): several (typically 4) stages, each contains multiple :class:`ResNetBlockBase`.
num_classes (None or int): if None, will not perform classification.
out_features (list[str]): name of the layers whose outputs should be returned in forward. Can be anything in:
"stem", "linear", or "res2" ... If None, will return the output of the last layer.
"""
super(ResNet, self).__init__()
self.stem = stem
self.num_classes = num_classes
current_stride = self.stem.stride
self._out_feature_strides = {"stem": current_stride}
self._out_feature_channels = {"stem": self.stem.out_channels}
self.stages_and_names = []
for i, blocks in enumerate(stages):
for block in blocks:
assert isinstance(block, ResNetBlockBase), block
curr_channels = block.out_channels
stage = nn.Sequential(*blocks)
name = "res" + str(i + 2)
self.add_module(name, stage)
self.stages_and_names.append((stage, name))
self._out_feature_strides[name] = current_stride = int(
current_stride * np.prod([k.stride for k in blocks])
)
self._out_feature_channels[name] = blocks[-1].out_channels
if num_classes is not None:
self.avgpool = nn.AdaptiveAvgPool2d((1, 1))
self.linear = nn.Linear(curr_channels, num_classes)
# Sec 5.1 in "Accurate, Large Minibatch SGD: Training ImageNet in 1 Hour":
# "The 1000-way fully-connected layer is initialized by
# drawing weights from a zero-mean Gaussian with std of 0.01."
nn.init.normal_(self.linear.weight, stddev=0.01)
name = "linear"
if out_features is None:
out_features = [name]
self._out_features = out_features
assert len(self._out_features)
children = [x[0] for x in self.named_children()]
for out_feature in self._out_features:
assert out_feature in children, "Available children: {}".format(", ".join(children))
def forward(self, x):
outputs = {}
x = self.stem(x)
if "stem" in self._out_features:
outputs["stem"] = x
for stage, name in self.stages_and_names:
x = stage(x)
if name in self._out_features:
outputs[name] = x
if self.num_classes is not None:
x = self.avgpool(x)
x = self.linear(x)
if "linear" in self._out_features:
outputs["linear"] = x
return outputs
def output_shape(self):
return {
name: ShapeSpec(
channels=self._out_feature_channels[name],
stride=self._out_feature_strides[name],
)
for name in self._out_features
}
@staticmethod
def make_stage(
block_class,
num_blocks,
first_stride=None,
*,
in_channels,
out_channels,
**kwargs,
):
"""
Usually, layers that produce the same feature map spatial size
are defined as one "stage".
Under such definition, stride_per_block[1:] should all be 1.
"""
if first_stride is not None:
assert "stride" not in kwargs and "stride_per_block" not in kwargs
kwargs["stride_per_block"] = [first_stride] + [1] * (num_blocks - 1)
blocks = []
for i in range(num_blocks):
curr_kwargs = {}
for k, v in kwargs.items():
if k.endswith("_per_block"):
assert (
len(v) == num_blocks
), f"Argument '{k}' of make_stage should have the same length as num_blocks={num_blocks}."
newk = k[: -len("_per_block")]
assert newk not in kwargs, f"Cannot call make_stage with both {k} and {newk}!"
curr_kwargs[newk] = v[i]
else:
curr_kwargs[k] = v
blocks.append(block_class(in_channels=in_channels, out_channels=out_channels, **curr_kwargs))
in_channels = out_channels
return blocks
class ROIPooler(nn.Module):
"""
Region of interest feature map pooler that supports pooling from one or more
feature maps.
"""
def __init__(
self,
output_size,
scales,
sampling_ratio,
canonical_box_size=224,
canonical_level=4,
):
super().__init__()
# assumption that stride is a power of 2.
min_level = -math.log2(scales[0])
max_level = -math.log2(scales[-1])
# a bunch of testing
assert math.isclose(min_level, int(min_level)) and math.isclose(max_level, int(max_level))
assert len(scales) == max_level - min_level + 1, "not pyramid"
assert 0 < min_level and min_level <= max_level
if isinstance(output_size, int):
output_size = (output_size, output_size)
assert len(output_size) == 2 and isinstance(output_size[0], int) and isinstance(output_size[1], int)
if len(scales) > 1:
assert min_level <= canonical_level and canonical_level <= max_level
assert canonical_box_size > 0
self.output_size = output_size
self.min_level = int(min_level)
self.max_level = int(max_level)
self.level_poolers = nn.ModuleList(RoIPool(output_size, spatial_scale=scale) for scale in scales)
self.canonical_level = canonical_level
self.canonical_box_size = canonical_box_size
def forward(self, feature_maps, boxes):
"""
Args:
feature_maps: List[torch.Tensor(N,C,W,H)]
box_lists: list[torch.Tensor])
Returns:
A tensor of shape(N*B, Channels, output_size, output_size)
"""
x = list(feature_maps.values())
num_level_assignments = len(self.level_poolers)
assert len(x) == num_level_assignments and len(boxes) == x[0].size(0)
pooler_fmt_boxes = convert_boxes_to_pooler_format(boxes)
if num_level_assignments == 1:
return self.level_poolers[0](x[0], pooler_fmt_boxes)
level_assignments = assign_boxes_to_levels(
boxes,
self.min_level,
self.max_level,
self.canonical_box_size,
self.canonical_level,
)
num_boxes = len(pooler_fmt_boxes)
num_channels = x[0].shape[1]
output_size = self.output_size[0]
dtype, device = x[0].dtype, x[0].device
output = torch.zeros(
(num_boxes, num_channels, output_size, output_size),
dtype=dtype,
device=device,
)
for level, (x_level, pooler) in enumerate(zip(x, self.level_poolers)):
inds = torch.nonzero(level_assignments == level).squeeze(1)
pooler_fmt_boxes_level = pooler_fmt_boxes[inds]
output[inds] = pooler(x_level, pooler_fmt_boxes_level)
return output
class ROIOutputs(object):
def __init__(self, cfg, training=False):
self.smooth_l1_beta = cfg.ROI_BOX_HEAD.SMOOTH_L1_BETA
self.box2box_transform = Box2BoxTransform(weights=cfg.ROI_BOX_HEAD.BBOX_REG_WEIGHTS)
self.training = training
self.score_thresh = cfg.ROI_HEADS.SCORE_THRESH_TEST
self.min_detections = cfg.MIN_DETECTIONS
self.max_detections = cfg.MAX_DETECTIONS
nms_thresh = cfg.ROI_HEADS.NMS_THRESH_TEST
if not isinstance(nms_thresh, list):
nms_thresh = [nms_thresh]
self.nms_thresh = nms_thresh
def _predict_boxes(self, proposals, box_deltas, preds_per_image):
num_pred = box_deltas.size(0)
B = proposals[0].size(-1)
K = box_deltas.size(-1) // B
box_deltas = box_deltas.view(num_pred * K, B)
proposals = torch.cat(proposals, dim=0).unsqueeze(-2).expand(num_pred, K, B)
proposals = proposals.reshape(-1, B)
boxes = self.box2box_transform.apply_deltas(box_deltas, proposals)
return boxes.view(num_pred, K * B).split(preds_per_image, dim=0)
def _predict_objs(self, obj_logits, preds_per_image):
probs = nn.functional.softmax(obj_logits, dim=-1)
probs = probs.split(preds_per_image, dim=0)
return probs
def _predict_attrs(self, attr_logits, preds_per_image):
attr_logits = attr_logits[..., :-1].softmax(-1)
attr_probs, attrs = attr_logits.max(-1)
return attr_probs.split(preds_per_image, dim=0), attrs.split(preds_per_image, dim=0)
@torch.no_grad()
def inference(
self,
obj_logits,
attr_logits,
box_deltas,
pred_boxes,
features,
sizes,
scales=None,
):
# only the pred boxes is the
preds_per_image = [p.size(0) for p in pred_boxes]
boxes_all = self._predict_boxes(pred_boxes, box_deltas, preds_per_image)
obj_scores_all = self._predict_objs(obj_logits, preds_per_image) # list of length N
attr_probs_all, attrs_all = self._predict_attrs(attr_logits, preds_per_image)
features = features.split(preds_per_image, dim=0)
# fun for each image too, also I can experiment and do multiple images
final_results = []
zipped = zip(boxes_all, obj_scores_all, attr_probs_all, attrs_all, sizes)
for i, (boxes, obj_scores, attr_probs, attrs, size) in enumerate(zipped):
for nms_t in self.nms_thresh:
outputs = do_nms(
boxes,
obj_scores,
size,
self.score_thresh,
nms_t,
self.min_detections,
self.max_detections,
)
if outputs is not None:
max_boxes, max_scores, classes, ids = outputs
break
if scales is not None:
scale_yx = scales[i]
max_boxes[:, 0::2] *= scale_yx[1]
max_boxes[:, 1::2] *= scale_yx[0]
final_results.append(
(
max_boxes,
classes,
max_scores,
attrs[ids],
attr_probs[ids],
features[i][ids],
)
)
boxes, classes, class_probs, attrs, attr_probs, roi_features = map(list, zip(*final_results))
return boxes, classes, class_probs, attrs, attr_probs, roi_features
def training(self, obj_logits, attr_logits, box_deltas, pred_boxes, features, sizes):
pass
def __call__(
self,
obj_logits,
attr_logits,
box_deltas,
pred_boxes,
features,
sizes,
scales=None,
):
if self.training:
raise NotImplementedError()
return self.inference(
obj_logits,
attr_logits,
box_deltas,
pred_boxes,
features,
sizes,
scales=scales,
)
class Res5ROIHeads(nn.Module):
"""
ROIHeads perform all per-region computation in an R-CNN.
It contains logic of cropping the regions, extract per-region features
(by the res-5 block in this case), and make per-region predictions.
"""
def __init__(self, cfg, input_shape):
super().__init__()
self.batch_size_per_image = cfg.RPN.BATCH_SIZE_PER_IMAGE
self.positive_sample_fraction = cfg.ROI_HEADS.POSITIVE_FRACTION
self.in_features = cfg.ROI_HEADS.IN_FEATURES
self.num_classes = cfg.ROI_HEADS.NUM_CLASSES
self.proposal_append_gt = cfg.ROI_HEADS.PROPOSAL_APPEND_GT
self.feature_strides = {k: v.stride for k, v in input_shape.items()}
self.feature_channels = {k: v.channels for k, v in input_shape.items()}
self.cls_agnostic_bbox_reg = cfg.ROI_BOX_HEAD.CLS_AGNOSTIC_BBOX_REG
self.stage_channel_factor = 2**3 # res5 is 8x res2
self.out_channels = cfg.RESNETS.RES2_OUT_CHANNELS * self.stage_channel_factor
# self.proposal_matcher = Matcher(
# cfg.ROI_HEADS.IOU_THRESHOLDS,
# cfg.ROI_HEADS.IOU_LABELS,
# allow_low_quality_matches=False,
# )
pooler_resolution = cfg.ROI_BOX_HEAD.POOLER_RESOLUTION
pooler_scales = (1.0 / self.feature_strides[self.in_features[0]],)
sampling_ratio = cfg.ROI_BOX_HEAD.POOLER_SAMPLING_RATIO
res5_halve = cfg.ROI_BOX_HEAD.RES5HALVE
use_attr = cfg.ROI_BOX_HEAD.ATTR
num_attrs = cfg.ROI_BOX_HEAD.NUM_ATTRS
self.pooler = ROIPooler(
output_size=pooler_resolution,
scales=pooler_scales,
sampling_ratio=sampling_ratio,
)
self.res5 = self._build_res5_block(cfg)
if not res5_halve:
"""
Modifications for VG in RoI heads:
1. Change the stride of conv1 and shortcut in Res5.Block1 from 2 to 1
2. Modifying all conv2 with (padding: 1 --> 2) and (dilation: 1 --> 2)
"""
self.res5[0].conv1.stride = (1, 1)
self.res5[0].shortcut.stride = (1, 1)
for i in range(3):
self.res5[i].conv2.padding = (2, 2)
self.res5[i].conv2.dilation = (2, 2)
self.box_predictor = FastRCNNOutputLayers(
self.out_channels,
self.num_classes,
self.cls_agnostic_bbox_reg,
use_attr=use_attr,
num_attrs=num_attrs,
)
def _build_res5_block(self, cfg):
stage_channel_factor = self.stage_channel_factor # res5 is 8x res2
num_groups = cfg.RESNETS.NUM_GROUPS
width_per_group = cfg.RESNETS.WIDTH_PER_GROUP
bottleneck_channels = num_groups * width_per_group * stage_channel_factor
out_channels = self.out_channels
stride_in_1x1 = cfg.RESNETS.STRIDE_IN_1X1
norm = cfg.RESNETS.NORM
blocks = ResNet.make_stage(
BottleneckBlock,
3,
first_stride=2,
in_channels=out_channels // 2,
bottleneck_channels=bottleneck_channels,
out_channels=out_channels,
num_groups=num_groups,
norm=norm,
stride_in_1x1=stride_in_1x1,
)
return nn.Sequential(*blocks)
def _shared_roi_transform(self, features, boxes):
x = self.pooler(features, boxes)
return self.res5(x)
def forward(self, features, proposal_boxes, gt_boxes=None):
if self.training:
"""
see https://github.com/airsplay/py-bottom-up-attention/\
blob/master/detectron2/modeling/roi_heads/roi_heads.py
"""
raise NotImplementedError()
assert not proposal_boxes[0].requires_grad
box_features = self._shared_roi_transform(features, proposal_boxes)
feature_pooled = box_features.mean(dim=[2, 3]) # pooled to 1x1
obj_logits, attr_logits, pred_proposal_deltas = self.box_predictor(feature_pooled)
return obj_logits, attr_logits, pred_proposal_deltas, feature_pooled
class AnchorGenerator(nn.Module):
"""
For a set of image sizes and feature maps, computes a set of anchors.
"""
def __init__(self, cfg, input_shape: List[ShapeSpec]):
super().__init__()
sizes = cfg.ANCHOR_GENERATOR.SIZES
aspect_ratios = cfg.ANCHOR_GENERATOR.ASPECT_RATIOS
self.strides = [x.stride for x in input_shape]
self.offset = cfg.ANCHOR_GENERATOR.OFFSET
assert 0.0 <= self.offset < 1.0, self.offset
"""
sizes (list[list[int]]): sizes[i] is the list of anchor sizes for feat map i
1. given in absolute lengths in units of the input image;
2. they do not dynamically scale if the input image size changes.
aspect_ratios (list[list[float]])
strides (list[int]): stride of each input feature.
"""
self.num_features = len(self.strides)
self.cell_anchors = nn.ParameterList(self._calculate_anchors(sizes, aspect_ratios))
self._spacial_feat_dim = 4
def _calculate_anchors(self, sizes, aspect_ratios):
# If one size (or aspect ratio) is specified and there are multiple feature
# maps, then we "broadcast" anchors of that single size (or aspect ratio)
if len(sizes) == 1:
sizes *= self.num_features
if len(aspect_ratios) == 1:
aspect_ratios *= self.num_features
assert self.num_features == len(sizes)
assert self.num_features == len(aspect_ratios)
cell_anchors = [self.generate_cell_anchors(s, a).float() for s, a in zip(sizes, aspect_ratios)]
return cell_anchors
@property
def box_dim(self):
return self._spacial_feat_dim
@property
def num_cell_anchors(self):
"""
Returns:
list[int]: Each int is the number of anchors at every pixel location, on that feature map.
"""
return [len(cell_anchors) for cell_anchors in self.cell_anchors]
def grid_anchors(self, grid_sizes):
anchors = []
for size, stride, base_anchors in zip(grid_sizes, self.strides, self.cell_anchors):
shift_x, shift_y = _create_grid_offsets(size, stride, self.offset, base_anchors.device)
shifts = torch.stack((shift_x, shift_y, shift_x, shift_y), dim=1)
anchors.append((shifts.view(-1, 1, 4) + base_anchors.view(1, -1, 4)).reshape(-1, 4))
return anchors
def generate_cell_anchors(self, sizes=(32, 64, 128, 256, 512), aspect_ratios=(0.5, 1, 2)):
"""
anchors are continuous geometric rectangles
centered on one feature map point sample.
We can later build the set of anchors
for the entire feature map by tiling these tensors
"""
anchors = []
for size in sizes:
area = size**2.0
for aspect_ratio in aspect_ratios:
w = math.sqrt(area / aspect_ratio)
h = aspect_ratio * w
x0, y0, x1, y1 = -w / 2.0, -h / 2.0, w / 2.0, h / 2.0
anchors.append([x0, y0, x1, y1])
return nn.Parameter(torch.tensor(anchors))
def forward(self, features):
"""
Args:
features List[torch.Tensor]: list of feature maps on which to generate anchors.
Returns:
torch.Tensor: a list of #image elements.
"""
num_images = features[0].size(0)
grid_sizes = [feature_map.shape[-2:] for feature_map in features]
anchors_over_all_feature_maps = self.grid_anchors(grid_sizes)
anchors_over_all_feature_maps = torch.stack(anchors_over_all_feature_maps)
return anchors_over_all_feature_maps.unsqueeze(0).repeat_interleave(num_images, dim=0)
class RPNHead(nn.Module):
"""
RPN classification and regression heads. Uses a 3x3 conv to produce a shared
hidden state from which one 1x1 conv predicts objectness logits for each anchor
and a second 1x1 conv predicts bounding-box deltas specifying how to deform
each anchor into an object proposal.
"""
def __init__(self, cfg, input_shape: List[ShapeSpec]):
super().__init__()
# Standard RPN is shared across levels:
in_channels = [s.channels for s in input_shape]
assert len(set(in_channels)) == 1, "Each level must have the same channel!"
in_channels = in_channels[0]
anchor_generator = AnchorGenerator(cfg, input_shape)
num_cell_anchors = anchor_generator.num_cell_anchors
box_dim = anchor_generator.box_dim
assert len(set(num_cell_anchors)) == 1, "Each level must have the same number of cell anchors"
num_cell_anchors = num_cell_anchors[0]
if cfg.PROPOSAL_GENERATOR.HIDDEN_CHANNELS == -1:
hid_channels = in_channels
else:
hid_channels = cfg.PROPOSAL_GENERATOR.HIDDEN_CHANNELS
# Modifications for VG in RPN (modeling/proposal_generator/rpn.py)
# Use hidden dim instead fo the same dim as Res4 (in_channels)
# 3x3 conv for the hidden representation
self.conv = nn.Conv2d(in_channels, hid_channels, kernel_size=3, stride=1, padding=1)
# 1x1 conv for predicting objectness logits
self.objectness_logits = nn.Conv2d(hid_channels, num_cell_anchors, kernel_size=1, stride=1)
# 1x1 conv for predicting box2box transform deltas
self.anchor_deltas = nn.Conv2d(hid_channels, num_cell_anchors * box_dim, kernel_size=1, stride=1)
for layer in [self.conv, self.objectness_logits, self.anchor_deltas]:
nn.init.normal_(layer.weight, std=0.01)
nn.init.constant_(layer.bias, 0)
def forward(self, features):
"""
Args:
features (list[Tensor]): list of feature maps
"""
pred_objectness_logits = []
pred_anchor_deltas = []
for x in features:
t = nn.functional.relu(self.conv(x))
pred_objectness_logits.append(self.objectness_logits(t))
pred_anchor_deltas.append(self.anchor_deltas(t))
return pred_objectness_logits, pred_anchor_deltas
class RPN(nn.Module):
"""
Region Proposal Network, introduced by the Faster R-CNN paper.
"""
def __init__(self, cfg, input_shape: Dict[str, ShapeSpec]):
super().__init__()
self.min_box_side_len = cfg.PROPOSAL_GENERATOR.MIN_SIZE
self.in_features = cfg.RPN.IN_FEATURES
self.nms_thresh = cfg.RPN.NMS_THRESH
self.batch_size_per_image = cfg.RPN.BATCH_SIZE_PER_IMAGE
self.positive_fraction = cfg.RPN.POSITIVE_FRACTION
self.smooth_l1_beta = cfg.RPN.SMOOTH_L1_BETA
self.loss_weight = cfg.RPN.LOSS_WEIGHT
self.pre_nms_topk = {
True: cfg.RPN.PRE_NMS_TOPK_TRAIN,
False: cfg.RPN.PRE_NMS_TOPK_TEST,
}
self.post_nms_topk = {
True: cfg.RPN.POST_NMS_TOPK_TRAIN,
False: cfg.RPN.POST_NMS_TOPK_TEST,
}
self.boundary_threshold = cfg.RPN.BOUNDARY_THRESH
self.anchor_generator = AnchorGenerator(cfg, [input_shape[f] for f in self.in_features])
self.box2box_transform = Box2BoxTransform(weights=cfg.RPN.BBOX_REG_WEIGHTS)
self.anchor_matcher = Matcher(
cfg.RPN.IOU_THRESHOLDS,
cfg.RPN.IOU_LABELS,
allow_low_quality_matches=True,
)
self.rpn_head = RPNHead(cfg, [input_shape[f] for f in self.in_features])
def training(self, images, image_shapes, features, gt_boxes):
pass
def inference(self, outputs, images, image_shapes, features, gt_boxes=None):
outputs = find_top_rpn_proposals(
outputs.predict_proposals(),
outputs.predict_objectness_logits(),
images,
image_shapes,
self.nms_thresh,
self.pre_nms_topk[self.training],
self.post_nms_topk[self.training],
self.min_box_side_len,
self.training,
)
results = []
for img in outputs:
im_boxes, img_box_logits = img
img_box_logits, inds = img_box_logits.sort(descending=True)
im_boxes = im_boxes[inds]
results.append((im_boxes, img_box_logits))
(proposal_boxes, logits) = tuple(map(list, zip(*results)))
return proposal_boxes, logits
def forward(self, images, image_shapes, features, gt_boxes=None):
"""
Args:
images (torch.Tensor): input images of length `N`
features (dict[str: Tensor])
gt_instances
"""
# features is dict, key = block level, v = feature_map
features = [features[f] for f in self.in_features]
pred_objectness_logits, pred_anchor_deltas = self.rpn_head(features)
anchors = self.anchor_generator(features)
outputs = RPNOutputs(
self.box2box_transform,
self.anchor_matcher,
self.batch_size_per_image,
self.positive_fraction,
images,
pred_objectness_logits,
pred_anchor_deltas,
anchors,
self.boundary_threshold,
gt_boxes,
self.smooth_l1_beta,
)
# For RPN-only models, the proposals are the final output
if self.training:
raise NotImplementedError()
return self.training(outputs, images, image_shapes, features, gt_boxes)
else:
return self.inference(outputs, images, image_shapes, features, gt_boxes)
class FastRCNNOutputLayers(nn.Module):
"""
Two linear layers for predicting Fast R-CNN outputs:
(1) proposal-to-detection box regression deltas
(2) classification scores
"""
def __init__(
self,
input_size,
num_classes,
cls_agnostic_bbox_reg,
box_dim=4,
use_attr=False,
num_attrs=-1,
):
"""
Args:
input_size (int): channels, or (channels, height, width)
num_classes (int)
cls_agnostic_bbox_reg (bool)
box_dim (int)
"""
super().__init__()
if not isinstance(input_size, int):
input_size = np.prod(input_size)
# (do + 1 for background class)
self.cls_score = nn.Linear(input_size, num_classes + 1)
num_bbox_reg_classes = 1 if cls_agnostic_bbox_reg else num_classes
self.bbox_pred = nn.Linear(input_size, num_bbox_reg_classes * box_dim)
self.use_attr = use_attr
if use_attr:
"""
Modifications for VG in RoI heads
Embedding: {num_classes + 1} --> {input_size // 8}
Linear: {input_size + input_size // 8} --> {input_size // 4}
Linear: {input_size // 4} --> {num_attrs + 1}
"""
self.cls_embedding = nn.Embedding(num_classes + 1, input_size // 8)
self.fc_attr = nn.Linear(input_size + input_size // 8, input_size // 4)
self.attr_score = nn.Linear(input_size // 4, num_attrs + 1)
nn.init.normal_(self.cls_score.weight, std=0.01)
nn.init.normal_(self.bbox_pred.weight, std=0.001)
for item in [self.cls_score, self.bbox_pred]:
nn.init.constant_(item.bias, 0)
def forward(self, roi_features):
if roi_features.dim() > 2:
roi_features = torch.flatten(roi_features, start_dim=1)
scores = self.cls_score(roi_features)
proposal_deltas = self.bbox_pred(roi_features)
if self.use_attr:
_, max_class = scores.max(-1) # [b, c] --> [b]
cls_emb = self.cls_embedding(max_class) # [b] --> [b, 256]
roi_features = torch.cat([roi_features, cls_emb], -1) # [b, 2048] + [b, 256] --> [b, 2304]
roi_features = self.fc_attr(roi_features)
roi_features = nn.functional.relu(roi_features)
attr_scores = self.attr_score(roi_features)
return scores, attr_scores, proposal_deltas
else:
return scores, proposal_deltas
class GeneralizedRCNN(nn.Module):
def __init__(self, cfg):
super().__init__()
self.device = torch.device(cfg.MODEL.DEVICE)
self.backbone = build_backbone(cfg)
self.proposal_generator = RPN(cfg, self.backbone.output_shape())
self.roi_heads = Res5ROIHeads(cfg, self.backbone.output_shape())
self.roi_outputs = ROIOutputs(cfg)
self.to(self.device)
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path, *model_args, **kwargs):
config = kwargs.pop("config", None)
state_dict = kwargs.pop("state_dict", None)
cache_dir = kwargs.pop("cache_dir", None)
from_tf = kwargs.pop("from_tf", False)
force_download = kwargs.pop("force_download", False)
resume_download = kwargs.pop("resume_download", False)
proxies = kwargs.pop("proxies", None)
local_files_only = kwargs.pop("local_files_only", False)
use_cdn = kwargs.pop("use_cdn", True)
# Load config if we don't provide a configuration
if not isinstance(config, Config):
config_path = config if config is not None else pretrained_model_name_or_path
# try:
config = Config.from_pretrained(
config_path,
cache_dir=cache_dir,
force_download=force_download,
resume_download=resume_download,
proxies=proxies,
local_files_only=local_files_only,
)
# Load model
if pretrained_model_name_or_path is not None:
if os.path.isdir(pretrained_model_name_or_path):
if os.path.isfile(os.path.join(pretrained_model_name_or_path, WEIGHTS_NAME)):
# Load from a PyTorch checkpoint
archive_file = os.path.join(pretrained_model_name_or_path, WEIGHTS_NAME)
else:
raise EnvironmentError(
"Error no file named {} found in directory {} ".format(
WEIGHTS_NAME,
pretrained_model_name_or_path,
)
)
elif os.path.isfile(pretrained_model_name_or_path) or is_remote_url(pretrained_model_name_or_path):
archive_file = pretrained_model_name_or_path
elif os.path.isfile(pretrained_model_name_or_path + ".index"):
assert from_tf, "We found a TensorFlow checkpoint at {}, please set from_tf to True to load from this checkpoint".format(
pretrained_model_name_or_path + ".index"
)
archive_file = pretrained_model_name_or_path + ".index"
else:
archive_file = hf_bucket_url(
pretrained_model_name_or_path,
filename=WEIGHTS_NAME,
use_cdn=use_cdn,
)
try:
# Load from URL or cache if already cached
resolved_archive_file = cached_path(
archive_file,
cache_dir=cache_dir,
force_download=force_download,
proxies=proxies,
resume_download=resume_download,
local_files_only=local_files_only,
)
if resolved_archive_file is None:
raise EnvironmentError
except EnvironmentError:
msg = f"Can't load weights for '{pretrained_model_name_or_path}'."
raise EnvironmentError(msg)
if resolved_archive_file == archive_file:
print("loading weights file {}".format(archive_file))
else:
print("loading weights file {} from cache at {}".format(archive_file, resolved_archive_file))
else:
resolved_archive_file = None
# Instantiate model.
model = cls(config)
if state_dict is None:
try:
try:
state_dict = torch.load(resolved_archive_file, map_location="cpu")
except Exception:
state_dict = load_checkpoint(resolved_archive_file)
except Exception:
raise OSError(
"Unable to load weights from pytorch checkpoint file. "
"If you tried to load a PyTorch model from a TF 2.0 checkpoint, please set from_tf=True. "
)
missing_keys = []
unexpected_keys = []
error_msgs = []
# Convert old format to new format if needed from a PyTorch state_dict
old_keys = []
new_keys = []
for key in state_dict.keys():
new_key = None
if "gamma" in key:
new_key = key.replace("gamma", "weight")
if "beta" in key:
new_key = key.replace("beta", "bias")
if new_key:
old_keys.append(key)
new_keys.append(new_key)
for old_key, new_key in zip(old_keys, new_keys):
state_dict[new_key] = state_dict.pop(old_key)
# copy state_dict so _load_from_state_dict can modify it
metadata = getattr(state_dict, "_metadata", None)
state_dict = state_dict.copy()
if metadata is not None:
state_dict._metadata = metadata
model_to_load = model
model_to_load.load_state_dict(state_dict)
if model.__class__.__name__ != model_to_load.__class__.__name__:
base_model_state_dict = model_to_load.state_dict().keys()
head_model_state_dict_without_base_prefix = [
key.split(cls.base_model_prefix + ".")[-1] for key in model.state_dict().keys()
]
missing_keys.extend(head_model_state_dict_without_base_prefix - base_model_state_dict)
if len(unexpected_keys) > 0:
print(
f"Some weights of the model checkpoint at {pretrained_model_name_or_path} were not used when"
f" initializing {model.__class__.__name__}: {unexpected_keys}\n- This IS expected if you are"
f" initializing {model.__class__.__name__} from the checkpoint of a model trained on another task or"
" with another architecture (e.g. initializing a BertForSequenceClassification model from a"
" BertForPreTraining model).\n- This IS NOT expected if you are initializing"
f" {model.__class__.__name__} from the checkpoint of a model that you expect to be exactly identical"
" (initializing a BertForSequenceClassification model from a BertForSequenceClassification model)."
)
else:
print(f"All model checkpoint weights were used when initializing {model.__class__.__name__}.\n")
if len(missing_keys) > 0:
print(
f"Some weights of {model.__class__.__name__} were not initialized from the model checkpoint at"
f" {pretrained_model_name_or_path} and are newly initialized: {missing_keys}\nYou should probably"
" TRAIN this model on a down-stream task to be able to use it for predictions and inference."
)
else:
print(
f"All the weights of {model.__class__.__name__} were initialized from the model checkpoint at"
f" {pretrained_model_name_or_path}.\nIf your task is similar to the task the model of the checkpoint"
f" was trained on, you can already use {model.__class__.__name__} for predictions without further"
" training."
)
if len(error_msgs) > 0:
raise RuntimeError(
"Error(s) in loading state_dict for {}:\n\t{}".format(
model.__class__.__name__, "\n\t".join(error_msgs)
)
)
# Set model in evaluation mode to deactivate DropOut modules by default
model.eval()
return model
def forward(
self,
images,
image_shapes,
gt_boxes=None,
proposals=None,
scales_yx=None,
**kwargs,
):
"""
kwargs:
max_detections (int), return_tensors {"np", "pt", None}, padding {None,
"max_detections"}, pad_value (int), location = {"cuda", "cpu"}
"""
if self.training:
raise NotImplementedError()
return self.inference(
images=images,
image_shapes=image_shapes,
gt_boxes=gt_boxes,
proposals=proposals,
scales_yx=scales_yx,
**kwargs,
)
@torch.no_grad()
def inference(
self,
images,
image_shapes,
gt_boxes=None,
proposals=None,
scales_yx=None,
**kwargs,
):
# run images through backbone
original_sizes = image_shapes * scales_yx
features = self.backbone(images)
# generate proposals if none are available
if proposals is None:
proposal_boxes, _ = self.proposal_generator(images, image_shapes, features, gt_boxes)
else:
assert proposals is not None
# pool object features from either gt_boxes, or from proposals
obj_logits, attr_logits, box_deltas, feature_pooled = self.roi_heads(features, proposal_boxes, gt_boxes)
# prepare FRCNN Outputs and select top proposals
boxes, classes, class_probs, attrs, attr_probs, roi_features = self.roi_outputs(
obj_logits=obj_logits,
attr_logits=attr_logits,
box_deltas=box_deltas,
pred_boxes=proposal_boxes,
features=feature_pooled,
sizes=image_shapes,
scales=scales_yx,
)
# will we pad???
subset_kwargs = {
"max_detections": kwargs.get("max_detections", None),
"return_tensors": kwargs.get("return_tensors", None),
"pad_value": kwargs.get("pad_value", 0),
"padding": kwargs.get("padding", None),
}
preds_per_image = torch.tensor([p.size(0) for p in boxes])
boxes = pad_list_tensors(boxes, preds_per_image, **subset_kwargs)
classes = pad_list_tensors(classes, preds_per_image, **subset_kwargs)
class_probs = pad_list_tensors(class_probs, preds_per_image, **subset_kwargs)
attrs = pad_list_tensors(attrs, preds_per_image, **subset_kwargs)
attr_probs = pad_list_tensors(attr_probs, preds_per_image, **subset_kwargs)
roi_features = pad_list_tensors(roi_features, preds_per_image, **subset_kwargs)
subset_kwargs["padding"] = None
preds_per_image = pad_list_tensors(preds_per_image, None, **subset_kwargs)
sizes = pad_list_tensors(image_shapes, None, **subset_kwargs)
normalized_boxes = norm_box(boxes, original_sizes)
return OrderedDict(
{
"obj_ids": classes,
"obj_probs": class_probs,
"attr_ids": attrs,
"attr_probs": attr_probs,
"boxes": boxes,
"sizes": sizes,
"preds_per_image": preds_per_image,
"roi_features": roi_features,
"normalized_boxes": normalized_boxes,
}
)
| 0 |
hf_public_repos/transformers/examples/research_projects
|
hf_public_repos/transformers/examples/research_projects/lxmert/demo.ipynb
|
# %pip install-r requirements.txtfrom IPython.display import clear_output, Image, display
import PIL.Image
import io
import json
import torch
import numpy as np
from processing_image import Preprocess
from visualizing_image import SingleImageViz
from modeling_frcnn import GeneralizedRCNN
from utils import Config
import utils
from transformers import LxmertForQuestionAnswering, LxmertTokenizer
import wget
import pickle
import os
# URL = "https://raw.githubusercontent.com/airsplay/py-bottom-up-attention/master/demo/data/images/input.jpg",
URL = "https://vqa.cloudcv.org/media/test2014/COCO_test2014_000000262567.jpg"
OBJ_URL = "https://raw.githubusercontent.com/airsplay/py-bottom-up-attention/master/demo/data/genome/1600-400-20/objects_vocab.txt"
ATTR_URL = "https://raw.githubusercontent.com/airsplay/py-bottom-up-attention/master/demo/data/genome/1600-400-20/attributes_vocab.txt"
GQA_URL = "https://raw.githubusercontent.com/airsplay/lxmert/master/data/gqa/trainval_label2ans.json"
VQA_URL = "https://raw.githubusercontent.com/airsplay/lxmert/master/data/vqa/trainval_label2ans.json"
# for visualizing output
def showarray(a, fmt="jpeg"):
a = np.uint8(np.clip(a, 0, 255))
f = io.BytesIO()
PIL.Image.fromarray(a).save(f, fmt)
display(Image(data=f.getvalue()))# load object, attribute, and answer labels
objids = utils.get_data(OBJ_URL)
attrids = utils.get_data(ATTR_URL)
gqa_answers = utils.get_data(GQA_URL)
vqa_answers = utils.get_data(VQA_URL)# load models and model components
frcnn_cfg = Config.from_pretrained("unc-nlp/frcnn-vg-finetuned")
frcnn = GeneralizedRCNN.from_pretrained("unc-nlp/frcnn-vg-finetuned", config=frcnn_cfg)
image_preprocess = Preprocess(frcnn_cfg)
lxmert_tokenizer = LxmertTokenizer.from_pretrained("unc-nlp/lxmert-base-uncased")
lxmert_gqa = LxmertForQuestionAnswering.from_pretrained("unc-nlp/lxmert-gqa-uncased")
lxmert_vqa = LxmertForQuestionAnswering.from_pretrained("unc-nlp/lxmert-vqa-uncased")# image viz
frcnn_visualizer = SingleImageViz(URL, id2obj=objids, id2attr=attrids)
# run frcnn
images, sizes, scales_yx = image_preprocess(URL)
output_dict = frcnn(
images,
sizes,
scales_yx=scales_yx,
padding="max_detections",
max_detections=frcnn_cfg.max_detections,
return_tensors="pt",
)
# add boxes and labels to the image
frcnn_visualizer.draw_boxes(
output_dict.get("boxes"),
output_dict.pop("obj_ids"),
output_dict.pop("obj_probs"),
output_dict.pop("attr_ids"),
output_dict.pop("attr_probs"),
)
showarray(frcnn_visualizer._get_buffer())test_questions_for_url1 = [
"Where is this scene?",
"what is the man riding?",
"What is the man wearing?",
"What is the color of the horse?",
]
test_questions_for_url2 = [
"Where is the cat?",
"What is near the disk?",
"What is the color of the table?",
"What is the color of the cat?",
"What is the shape of the monitor?",
]
# Very important that the boxes are normalized
normalized_boxes = output_dict.get("normalized_boxes")
features = output_dict.get("roi_features")
for test_question in test_questions_for_url2:
# run lxmert
test_question = [test_question]
inputs = lxmert_tokenizer(
test_question,
padding="max_length",
max_length=20,
truncation=True,
return_token_type_ids=True,
return_attention_mask=True,
add_special_tokens=True,
return_tensors="pt",
)
# run lxmert(s)
output_gqa = lxmert_gqa(
input_ids=inputs.input_ids,
attention_mask=inputs.attention_mask,
visual_feats=features,
visual_pos=normalized_boxes,
token_type_ids=inputs.token_type_ids,
output_attentions=False,
)
output_vqa = lxmert_vqa(
input_ids=inputs.input_ids,
attention_mask=inputs.attention_mask,
visual_feats=features,
visual_pos=normalized_boxes,
token_type_ids=inputs.token_type_ids,
output_attentions=False,
)
# get prediction
pred_vqa = output_vqa["question_answering_score"].argmax(-1)
pred_gqa = output_gqa["question_answering_score"].argmax(-1)
print("Question:", test_question)
print("prediction from LXMERT GQA:", gqa_answers[pred_gqa])
print("prediction from LXMERT VQA:", vqa_answers[pred_vqa])
| 0 |
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