/*
 * The Exomiser - A tool to annotate and prioritize genomic variants
 *
 * Copyright (c) 2016-2020 Queen Mary University of London.
 * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd.
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */

package org.monarchinitiative.exomiser.core.writers;

import org.junit.jupiter.api.Test;
import org.monarchinitiative.exomiser.api.v1.OutputProto;

import java.util.Set;

import static org.hamcrest.CoreMatchers.equalTo;
import static org.hamcrest.MatcherAssert.assertThat;

/**
 * @author Jules Jacobsen <j.jacobsen@qmul.ac.uk>
 */
class OutputSettingsProtoConverterTest {

    private final OutputSettingsProtoConverter instance = new OutputSettingsProtoConverter();

    private final OutputProto.OutputOptions proto = OutputProto.OutputOptions.newBuilder()
            .setOutputContributingVariantsOnly(true)
            .setNumGenes(10)
            .setOutputPrefix("frood")
            .addOutputFormats(OutputProto.OutputFormat.HTML)
            .addOutputFormats(OutputProto.OutputFormat.JSON)
            .build();

    private final OutputSettings domain = OutputSettings.builder()
            .outputContributingVariantsOnly(true)
            .numberOfGenesToShow(10)
            .outputPrefix("frood")
            .outputFormats(Set.of(OutputFormat.HTML, OutputFormat.JSON))
            .build();

    @Test
    void toProto() {
        assertThat(instance.toProto(domain), equalTo(proto));
    }

    @Test
    void toDomain() {
        assertThat(instance.toDomain(proto), equalTo(domain));
    }
}
@@ -1602,36 +1602,24 @@
 rmats(Output
-Proto.Output
 Format.HTML)
@@ -1617,16 +1617,27 @@
 mat.HTML
+.toString()
 )%0A      
@@ -1666,28 +1666,16 @@
 s(Output
-Proto.Output
 Format.J
@@ -1677,16 +1677,27 @@
 mat.JSON
+.toString()
 )%0A      

Update OutputSettingsProtoConverterTest to use string values for outputFormat