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+/* Copyright (C) 2003-2017 Patrick G. Durand%0A *%0A *  This program is free software: you can redistribute it and/or modify%0A *  it under the terms of the GNU Affero General Public License as published by%0A *  the Free Software Foundation, either version 3 of the License, or%0A *  (at your option) any later version.%0A *%0A *  You may obtain a copy of the License at%0A *%0A *     https://www.gnu.org/licenses/agpl-3.0.txt%0A *%0A *  This program is distributed in the hope that it will be useful,%0A *  but WITHOUT ANY WARRANTY; without even the implied warranty of%0A *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the%0A *  GNU Affero General Public License for more details.%0A */%0Apackage bzh.plealog.bioinfo.api.data.sequence;%0A%0Aimport bzh.plealog.bioinfo.api.data.sequence.DSequenceAlignment;%0A%0A/**%0A * This interface models a Multiple Sequence Alignment intended to be%0A * exported using a particular format.%0A * %0A * @author Patrick G. Durand%0A */%0Apublic interface DSequenceAlignmentViewPort extends DSequenceAlignment%7B%0A    %0A    /**%0A     * Starting column of the MSA. Zero-based value.%0A     */%0A    public int fromColumn();%0A    /**%0A     * Ending column of the MSA. Zero-based value.%0A     */%0A    public int toColumn();%0A    /**%0A     * Starting row of the MSA. Zero-based value.%0A     */%0A    public int fromRow();%0A    /**%0A     * Ending row of the MSA. Zero-based value.%0A     */%0A    public int toRow();%0A    /**%0A     * Returns the header for a particular row.%0A     * %0A     * @param row row index. Value in the range %5B0..rows()-1%5D.%0A     * @return a name. Usually it is a sequence name.%0A     */%0A    public String rowHeader(int row);%0A    %0A%7D%0A

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