/**
 * Copyright © 2011-2013 EMBL - European Bioinformatics Institute
 * 
 * Licensed under the Apache License, Version 2.0 (the "License"); 
 * you may not use this file except in compliance with the License.  
 * You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
package uk.ac.ebi.phenotype.dao;

/**
 *
 * Sequence region data access manager interface.
 * 
 * @author Gautier Koscielny (EMBL-EBI) <koscieln@ebi.ac.uk>
 * @since February 2012
 */

import java.util.HashMap;
import java.util.List;

import uk.ac.ebi.phenotype.pojo.SequenceRegion;



public interface SequenceRegionDAO {

	/**
	 * Get all sequence region
	 * @return all sequence region
	 */
	public List<SequenceRegion> getAllSequenceRegions();

	/**
	 * Get all sequence region in a map
	 * @return all sequence region
	 */
	public HashMap<String, SequenceRegion> getSequenceRegionsMap();

	/**
	 * Find a sequence region by its name.
	 * @param name the sequence region name
	 * @return the sequence region
	 */
	public SequenceRegion getSequenceRegionByName(String name);
}

@@ -950,16 +950,37 @@
 gionDAO 
+extends HibernateDAO 
 %7B%0A%0A%09/**%0A

use annotations for DAO and entity configurations;