/*
 * Copyright 2008-2013 Microarray Informatics Team, EMBL-European Bioinformatics Institute
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 * http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 *
 *
 * For further details of the Gene Expression Atlas project, including source code,
 * downloads and documentation, please see:
 *
 * http://gxa.github.com/gxa
 */

package uk.ac.ebi.atlas.acceptance.selenium.tests.genepage;

import org.junit.Test;
import org.openqa.selenium.By;
import org.openqa.selenium.support.ui.ExpectedConditions;
import org.openqa.selenium.support.ui.FluentWait;
import org.openqa.selenium.support.ui.WebDriverWait;
import uk.ac.ebi.atlas.acceptance.selenium.fixture.SinglePageSeleniumFixture;
import uk.ac.ebi.atlas.acceptance.selenium.pages.BioEntityPage;

import java.util.concurrent.TimeUnit;

import static org.hamcrest.MatcherAssert.assertThat;
import static org.hamcrest.Matchers.contains;
import static org.hamcrest.Matchers.is;

public class BaselineGeneBioEntityPageExistingGeneIT extends SinglePageSeleniumFixture {

    private static final String GENE_IDENTIFIER = "ENSG00000163331";

    private BioEntityPage subject;

    @Override
    protected void getStartingPage() {
        subject = new BioEntityPage(driver, GENE_IDENTIFIER, "genes");
        subject.get();
    }

    @Test
    public void checkPaneExpansion() {
        assertThat(subject.isBaselineProfileExpanded(), is(true));
        assertThat(subject.isInfoCardExpanded(), is(false));
    }

    @Test
    public void checkSelectedProfiles() {
        FluentWait wait = new WebDriverWait(driver, 10L).pollingEvery(1, TimeUnit.SECONDS);
        wait.until(ExpectedConditions.textToBePresentInElement(By.cssSelector(".bioEntityCardDifferentialSummary"), "Expression Level cut-off:"));

        assertThat(subject.isBaselineProfileExpanded(), is(true));

        subject.clickDisplayLevelsButton();

        assertThat(subject.getGeneNames(), contains("DAPL1"));
        assertThat(subject.getGeneNames().size(), is(1));
        assertThat(subject.hasGeneLink(0), is(false));

    }


}

@@ -1225,24 +1225,78 @@
 oEntityPage;
+%0Aimport uk.ac.ebi.atlas.acceptance.utils.SeleniumUtil;
 %0A%0Aimport jav
@@ -2520,24 +2520,217 @@
 (), is(1));%0A
+    %7D%0A%0A    @Test%0A    public void heatmapHasNoGeneLinks() %7B%0A        SeleniumUtil.waitForElementByIdUntilVisible(driver, %22heatmap-div%22);%0A        assertThat(subject.getGeneNames().size(), is(1));%0A
         asse
@@ -2776,15 +2776,13 @@
 ));%0A
-%0A
     %7D%0A%0A
-%0A
 %7D%0A

refactor - make test case explicit