/* Copyright (C) 2014  Egon Willighagen <egonw@users.sf.net>
 * 
 * Contact: cdk-devel@lists.sourceforge.net
 * 
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU Lesser General Public License
 * as published by the Free Software Foundation; either version 2.1
 * of the License, or (at your option) any later version.
 * All we ask is that proper credit is given for our work, which includes
 * - but is not limited to - adding the above copyright notice to the beginning
 * of your source code files, and to any copyright notice that you may distribute
 * with programs based on this work.
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Lesser General Public License for more details.
 * 
 * You should have received a copy of the GNU Lesser General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
 */
package com.github.egonw.ops4j;

import java.io.IOException;
import java.net.MalformedURLException;
import java.util.HashMap;
import java.util.Map;

import org.apache.http.HttpException;
import org.apache.http.client.ClientProtocolException;

public class Targets extends AbstractOPS4JClient {

	private Targets(String server, String appID, String appKey) throws MalformedURLException {
		super(server, appID, appKey, null);
	}

	public static Targets getInstance(String server, String apiID, String appKey) throws MalformedURLException {
		return new Targets(server, apiID, appKey);
	}

	public static Targets getInstance(Server server) throws MalformedURLException {
		return new Targets(server.getServer(), server.getAppID(), server.getAppKey());
	}
	
	public String info(String uri, Object... objects) throws ClientProtocolException, IOException, HttpException {
		Map<String,String> params = new HashMap<String,String>();
		params.put("uri", uri);
		return runRequest(server + "target", params, objects);
	}

	public String pharmacologyCount(String uri, Object... objects) throws ClientProtocolException, IOException, HttpException {
		Map<String,String> params = new HashMap<String,String>();
		params.put("uri", uri);
		return runRequest(server + "target/pharmacology/count", params, objects);
	}

	public String pharmacologyList(String uri, int page, int pageSize, Object... objects) throws ClientProtocolException, IOException, HttpException {
		Map<String,String> params = new HashMap<String,String>();
		params.put("uri", uri);
		params.put("_page", Integer.toString(page));
		params.put("_pageSize", Integer.toString(pageSize));
		return runRequest(server + "target/pharmacology/pages", params, objects);
	}

	public String classifications(String uri, Object... objects) throws ClientProtocolException, IOException, HttpException {
		Map<String,String> params = new HashMap<String,String>();
		params.put("uri", uri);
		return runRequest(server + "target/classifications", params, objects);
	}

	public String types(Object... objects) throws ClientProtocolException, IOException, HttpException {
		Map<String,String> params = new HashMap<String,String>();
		return runRequest(server + "target/types", params, objects);
	}

	public String classPharmacologyCount(String uri, Object... objects) throws ClientProtocolException, IOException, HttpException {
		Map<String,String> params = new HashMap<String,String>();
		params.put("uri", uri);
		return runRequest(server + "target/tree/pharmacology/count", params, objects);
	}

	public String classPharmacologyList(String uri, int page, int pageSize, Object... objects) throws ClientProtocolException, IOException, HttpException {
		Map<String,String> params = new HashMap<String,String>();
		params.put("uri", uri);
		params.put("_page", Integer.toString(page));
		params.put("_pageSize", Integer.toString(pageSize));
		return runRequest(server + "target/tree/pharmacology/pages", params, objects);
	}

	public String classMemberCount(String uri, Object... objects) throws ClientProtocolException, IOException, HttpException {
		Map<String,String> params = new HashMap<String,String>();
		params.put("uri", uri);
		return runRequest(server + "target/members/count", params, objects);
	}

	public String classMemberList(String uri, int page, int pageSize, Object... objects) throws ClientProtocolException, IOException, HttpException {
		Map<String,String> params = new HashMap<String,String>();
		params.put("uri", uri);
		params.put("_page", Integer.toString(page));
		params.put("_pageSize", Integer.toString(pageSize));
		return runRequest(server + "target/members/pages", params, objects);
	}

	public String compoundClassificationsFor(String uri, Object... objects) throws ClientProtocolException, IOException, HttpException {
		Map<String,String> params = new HashMap<String,String>();
		params.put("uri", uri);
		return runRequest(server + "target/classificationsForCompounds", params, objects);
	}
}

@@ -2834,32 +2834,355 @@
 , objects);%0A%09%7D%0A%0A
+%09public String pharmacologyAll(String uri, Object... objects) throws ClientProtocolException, IOException, HttpException %7B%0A%09%09Map%3CString,String%3E params = new HashMap%3CString,String%3E();%0A%09%09params.put(%22uri%22, uri);%0A%09%09params.put(%22_pageSize%22, %22all%22);%0A%09%09return runRequest(server + %22target/pharmacology/pages%22, params, objects);%0A%09%7D%0A%0A
 %09public String c

Support the 'all' approach