@@ -0,0 +1,3242 @@
+/*%0A * #%25L%0A * ImageJ software for multidimensional image processing and analysis.%0A * %25%25%0A * Copyright (C) 2009 - 2012 Board of Regents of the University of%0A * Wisconsin-Madison, Broad Institute of MIT and Harvard, and Max Planck%0A * Institute of Molecular Cell Biology and Genetics.%0A * %25%25%0A * Redistribution and use in source and binary forms, with or without%0A * modification, are permitted provided that the following conditions are met:%0A * %0A * 1. Redistributions of source code must retain the above copyright notice,%0A *    this list of conditions and the following disclaimer.%0A * 2. Redistributions in binary form must reproduce the above copyright notice,%0A *    this list of conditions and the following disclaimer in the documentation%0A *    and/or other materials provided with the distribution.%0A * %0A * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS %22AS IS%22%0A * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE%0A * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE%0A * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE%0A * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR%0A * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF%0A * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS%0A * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN%0A * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)%0A * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE%0A * POSSIBILITY OF SUCH DAMAGE.%0A * %0A * The views and conclusions contained in the software and documentation are%0A * those of the authors and should not be interpreted as representing official%0A * policies, either expressed or implied, of any organization.%0A * #L%25%0A */%0A%0Apackage imagej.core.plugins.overlay;%0A%0Aimport java.util.List;%0A%0Aimport imagej.data.display.ImageDisplay;%0Aimport imagej.data.display.OverlayInfoList;%0Aimport imagej.data.display.OverlayService;%0Aimport imagej.data.overlay.Overlay;%0Aimport imagej.ext.menu.MenuConstants;%0Aimport imagej.ext.plugin.ImageJPlugin;%0Aimport imagej.ext.plugin.Menu;%0Aimport imagej.ext.plugin.Parameter;%0Aimport imagej.ext.plugin.Plugin;%0A%0A%0A/**%0A * Copies the overlays currently selected in the Overlay Manager into the%0A * current display.%0A * %0A * @author Barry DeZonia%0A *%0A */%0A@Plugin(menu = %7B%0A%09@Menu(label = MenuConstants.IMAGE_LABEL, weight = MenuConstants.IMAGE_WEIGHT,%0A%09%09mnemonic = MenuConstants.IMAGE_MNEMONIC),%0A%09@Menu(label = %22Overlay%22, mnemonic = 'o'),%0A%09@Menu(label = %22From Overlay Manager%22, weight = 5, mnemonic = 'f') %7D,%0A%09headless = true)%0Apublic class ReferenceOverlays implements ImageJPlugin %7B%0A%0A%09@Parameter(required = true)%0A%09private ImageDisplay display;%0A%09%0A%09@Parameter%0A%09private OverlayService ovrSrv;%0A%09%0A%09@Override%0A%09public void run() %7B%0A%09%09OverlayInfoList overlayList = ovrSrv.getOverlayInfo();%0A%09%09List%3COverlay%3E selectedRoiMgrOverlays = overlayList.selectedOverlays();%0A%09%09List%3COverlay%3E currOverlays = ovrSrv.getOverlays(display);%0A%09%09boolean changes = false;%0A%09%09for (Overlay overlay : selectedRoiMgrOverlays) %7B%0A%09%09%09if (currOverlays.contains(overlay)) continue;%0A%09%09%09changes = true;%0A%09%09%09display.display(overlay);%0A%09%09%7D%0A%09%09if (changes) display.update();%0A%09%7D%0A%0A%7D%0A

Replace From ROI Manager functionality