/*
 * Copyright (c) 2007-2012 The Broad Institute, Inc.
 * SOFTWARE COPYRIGHT NOTICE
 * This software and its documentation are the copyright of the Broad Institute, Inc. All rights are reserved.
 *
 * This software is supplied without any warranty or guaranteed support whatsoever. The Broad Institute is not responsible for its use, misuse, or functionality.
 *
 * This software is licensed under the terms of the GNU Lesser General Public License (LGPL),
 * Version 2.1 which is available at http://www.opensource.org/licenses/lgpl-2.1.php.
 */

package org.broad.igv.ui.util;

import javax.swing.*;
import java.awt.*;
import java.awt.event.WindowAdapter;
import java.awt.event.WindowEvent;
import java.beans.PropertyChangeEvent;
import java.beans.PropertyChangeListener;

/**
 * @author eflakes
 */
public class ProgressBar extends JPanel
        implements PropertyChangeListener {

    private boolean isReady = false;
    private JProgressBar progressBar;
    private boolean closeOnCompletion = false;
    private Window progressParentWindow;
    private ProgressMonitor monitor;

    public ProgressBar(Window progressParentWindow, int minimumProgress, int maximumProgress, boolean closeOnCompletion, ProgressMonitor monitor) {
        this.progressParentWindow = progressParentWindow;
        this.closeOnCompletion = closeOnCompletion;
        this.monitor = monitor;
        setLayout(new BorderLayout());
        progressBar = new JProgressBar(minimumProgress, maximumProgress);
        progressBar.setIndeterminate(true); // Indeterminate by default
        this.add(progressBar);
        setReady(true);
    }

    public void setIndeterminate(boolean value) {
        progressBar.setIndeterminate(value);
    }

    public void propertyChange(PropertyChangeEvent evt) {

        if (isReady()) {

            if (ProgressMonitor.PROGRESS_PROPERTY.equalsIgnoreCase(evt.getPropertyName())) {

                int value = (Integer) evt.getNewValue();
                final int progress;

                if (value > progressBar.getMaximum()) {
                    progress = 100;
                } else {
                    progress = value;
                }

                progressBar.setValue(progress);


                if (progress > 99 && closeOnCompletion) {
                    setReady(false); // Accept no more input
                    progressParentWindow.setVisible(false);
                }
            }
        } else {
            Object source = evt.getSource();
            if (source instanceof ProgressMonitor) {
                ((ProgressMonitor) source).setReady(false);
            }
        }
    }

    static public class ProgressDialog extends JDialog {

        public static boolean isAlreadyShowing = false;

        public ProgressDialog() {
            super();
        }

        public ProgressDialog(Frame frame) {
            super(frame);
        }
    }

    public static ProgressBar showProgressDialog(Frame parent, ProgressMonitor monitor, boolean closeOnCompletion) {
        return showProgressDialog(parent, "", monitor, closeOnCompletion);
    }

    public static ProgressBar showProgressDialog(Frame dialogsParent, String title, ProgressMonitor monitor, boolean closeOnCompletion) {

        ProgressDialog.isAlreadyShowing = true; // To prevent mutiple dialogs at same time
        ProgressDialog progressDialog = null;

        if (dialogsParent == null) {

            progressDialog = new ProgressDialog();
            progressDialog.setSize(500, 25);

            // Center on screen
            UIUtilities.centerWindow(progressDialog);
        } else {
            progressDialog = new ProgressDialog(dialogsParent);
            progressDialog.setSize(500, 25);
            if (dialogsParent.isVisible()) {
                progressDialog.setLocationRelativeTo(dialogsParent);
            } else {
                // Center on screen
                UIUtilities.centerWindow(progressDialog);
            }
        }


        final ProgressBar bar = new ProgressBar(progressDialog, 0, 100, closeOnCompletion, monitor);
        bar.setSize(500, 25);
        bar.setPreferredSize(bar.getSize());
        progressDialog.setDefaultCloseOperation(JDialog.DISPOSE_ON_CLOSE);
        progressDialog.addWindowListener(new WindowAdapter() {

            @Override
            public void windowClosing(WindowEvent e) {
                bar.setReady(false);
                ProgressDialog.isAlreadyShowing = false;
            }
        });
        progressDialog.setModal(false);
        progressDialog.setTitle(title);
        progressDialog.getContentPane().add(bar);
        progressDialog.pack();
        monitor.addPropertyChangeListener(bar);
        progressDialog.setVisible(true);

        return bar;
    }

    /**
     * Set the progress bars value.
     *
     * @param value The new value set on the progress bar.
     */
    public void setValue(int value) {
        progressBar.setValue(value);

        if (value > 99 && closeOnCompletion) {
            setReady(false); // Accept no more input
            progressParentWindow.setVisible(false);
        }
    }

    /**
     * Get the current progress amount from the progress bar.
     *
     * @return
     */
    public int getValue() {
        return progressBar.getValue();
    }

    /**
     * Reset the progress bar to 0.
     */
    public void reset() {
        progressBar.setValue(0);
    }

    /**
     * Sets whether or not this class will respond to progress requests.
     *
     * @param ready
     */
    public void setReady(boolean ready) {
        isReady = ready;
        if (monitor != null) {
            monitor.setReady(ready);
        }
    }

    /**
     * returns whether or not this class will respond to progress requests.
     *
     * @return
     */
    public boolean isReady() {
        return isReady;
    }


    public void close() {
        setReady(false);
        if (progressParentWindow != null) {
            setValue(100);
            progressParentWindow.setVisible(false);
            ProgressDialog.isAlreadyShowing = false;
        }
    }
}
@@ -4733,20 +4733,147 @@
 .set
-Visible(true
+ModalExclusionType(Dialog.ModalExclusionType.APPLICATION_EXCLUDE);%0A        progressDialog.setVisible(true);%0A        progressDialog.toFront(
 );%0A%0A

Add toFront to ProgressBar.showProgressDialog so it always is generated up front. Set its modalexclusion type to application so it can be shown above modal dialogs.