/*
 * Licensed to the Apache Software Foundation (ASF) under one
 * or more contributor license agreements.  See the NOTICE file
 * distributed with this work for additional information
 * regarding copyright ownership.  The ASF licenses this file
 * to you under the Apache License, Version 2.0 (the
 * "License"); you may not use this file except in compliance
 * with the License.  You may obtain a copy of the License at
 * 
 *   http://www.apache.org/licenses/LICENSE-2.0
 * 
 * Unless required by applicable law or agreed to in writing,
 * software distributed under the License is distributed on an
 * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
 * KIND, either express or implied.  See the License for the
 * specific language governing permissions and limitations
 * under the License.
 */

package org.apache.uima.fit.util;

import static org.apache.uima.fit.util.CasUtil.select;
import static org.apache.uima.fit.util.CasUtil.selectCovered;

import java.util.Collection;
import java.util.Collections;
import java.util.LinkedHashMap;
import java.util.LinkedList;
import java.util.Map;

import org.apache.uima.cas.CAS;
import org.apache.uima.cas.text.AnnotationFS;
import org.apache.uima.jcas.JCas;

/**
 * Create a fast way of repeatedly checking whether instances of one type are contained within the
 * boundaries on another type.
 * 
 * 
 * @param <S>
 *          covering type.
 * @param <U>
 *          covered type.
 */
public class ContainmentIndex<S extends AnnotationFS, U extends AnnotationFS> {
  public static enum Type {
    DIRECT, REVERSE, BOTH
  }

  private Map<AnnotationFS, Collection<AnnotationFS>> data = new LinkedHashMap<AnnotationFS, Collection<AnnotationFS>>();

  private Map<AnnotationFS, Collection<AnnotationFS>> dataRev = new LinkedHashMap<AnnotationFS, Collection<AnnotationFS>>();

  /**
   * Create a new index on the given JCas using the specified two types. The last argument indicates
   * in which directions lookups to the index will be made.
   * 
   * @param cas
   *          the working JCas.
   * @param aSuper
   *          the covering type.
   * @param aUnder
   *          the covered type.
   * @param aType
   *          the indexing strategy.
   */
  public ContainmentIndex(CAS cas, org.apache.uima.cas.Type aSuper,
          org.apache.uima.cas.Type aUnder, Type aType) {
    Collection<AnnotationFS> over = select(cas, aSuper);
    for (AnnotationFS s : over) {
      Collection<AnnotationFS> under = selectCovered(cas, aUnder, s);
      for (AnnotationFS u : under) {
        switch (aType) {
          case DIRECT: {
            put(data, s, u);
            break;
          }
          case REVERSE:
            put(dataRev, u, s);
            break;
          case BOTH:
            put(data, s, u);
            put(dataRev, u, s);
            break;
        }
      }
    }
  }

  private <X, Y> void put(Map<X, Collection<Y>> map, X key, Y value) {
    Collection<Y> c = map.get(key);
    if (c == null) {
      c = new LinkedList<Y>();
      map.put(key, c);
    }
    c.add(value);
  }

  /**
   * Get all instances of the covered type contained within the boundaries of the specified instance
   * of the covering type.
   * 
   * @param aSuper
   *          a covering type instance.
   * @return a collection of covered type instances.
   */
  @SuppressWarnings("unchecked")
  public Collection<U> containedIn(S aSuper) {
    @SuppressWarnings("rawtypes")
    Collection c = data.get(aSuper);
    if (c == null) {
      return Collections.emptySet();
    }
    return c;
  }

  /**
   * Get all instances of the covering type containing the the specified instance of the covered
   * type.
   * 
   * @param aUnder
   *          a covered type instance.
   * @return a collection of covering type instances.
   */
  @SuppressWarnings("unchecked")
  public Collection<S> containing(U aUnder) {
    @SuppressWarnings("rawtypes")
    Collection c = dataRev.get(aUnder);
    if (c == null) {
      return Collections.emptySet();
    }
    return c;
  }

  /**
   * Checks if the given covered type is contained in the specified covering type.
   * 
   * @param aSuper
   *          the covering type instance.
   * @param aUnder
   *          the covered type instance.
   * @return whether the covered instance is contained in the covering instance.
   */
  public boolean isContainedIn(S aSuper, U aUnder) {
    return containedIn(aSuper).contains(aUnder);
  }

  /**
   * Checks if the given covered type is contained in any instance of the covering type.
   * 
   * @param aUnder
   *          the covered type instance.
   * @return whether the covered instance is contained in any instance of the covering type.
   */
  public boolean isContainedInAny(U aUnder) {
    Collection<S> containers = containing(aUnder);
    return containers != null && !containers.isEmpty();
  }

  /**
   * Factory method to create an index instead of using the constructor. This makes used of Java's
   * type inference capabilities and results in less verbose code.
   * 
   * @param <A>
   *          covering type.
   * @param <B>
   *          covered type.
   * @param aJcas
   *          the working JCas.
   * @param aSuper
   *          the covering type.
   * @param aUnder
   *          the covered type.
   * @param aType
   *          the indexing strategy.
   * @return the index instance.
   */
  @SuppressWarnings("unchecked")
  public static <A extends AnnotationFS, B extends AnnotationFS> ContainmentIndex<A, B> create(
          JCas aJcas, Class<A> aSuper, Class<B> aUnder, Type aType) {
    return (ContainmentIndex<A, B>) create(aJcas.getCas(), JCasUtil.getType(aJcas, aSuper),
            JCasUtil.getType(aJcas, aUnder), aType);
  }

  /**
   * Factory method to create an index instead of using the constructor. This makes used of Java's
   * type inference capabilities and results in less verbose code.
   * 
   * @param cas
   *          the working JCas.
   * @param aSuper
   *          the covering type.
   * @param aUnder
   *          the covered type.
   * @param aType
   *          the indexing strategy.
   * @return the index instance.
   */
  public static ContainmentIndex<AnnotationFS, AnnotationFS> create(CAS cas,
          org.apache.uima.cas.Type aSuper, org.apache.uima.cas.Type aUnder, Type aType) {
    return new ContainmentIndex<AnnotationFS, AnnotationFS>(cas, aSuper, aUnder, aType);
  }
}

@@ -2216,21 +2216,24 @@
   */%0A  p
-ublic
+rotected
  Contain

Make constructor of ContainmentIndex protected https://issues.apache.org/jira/browse/UIMA-2785