/*
 * Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
 * Copyright [2016-2018] EMBL-European Bioinformatics Institute
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *      http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

/*
 * Copyright (C) 2003 EBI, GRL
 *
 * This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by
 * the Free Software Foundation; either version 2.1 of the License, or (at your option) any later version.
 *
 * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
 * FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
 *
 * You should have received a copy of the GNU Lesser General Public License along with this library; if not, write to the Free Software Foundation,
 * Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 */
package org.ensembl.healthcheck.testcase.funcgen;

//import java.sql.Connection;
//import java.util.Map;
//import org.ensembl.healthcheck.DatabaseRegistryEntry;
//import org.ensembl.healthcheck.ReportManager;
import org.ensembl.healthcheck.Team;
import org.ensembl.healthcheck.testcase.generic.AnalysisDescription;

/**
 * Check that all of certain types of objects have analysis_descriptions. Also check that displayable field is set.
 */

public class FuncgenAnalysisDescription extends AnalysisDescription {

	String[] types = {"feature_set", "probe_feature", "alignment" }; //unmapped_object?
	//Will these types be available in parent class?

	/**
   * Create a new FuncgenAnalysisDescription testcase.
   */
	public FuncgenAnalysisDescription() {
		addToGroup("funcgen");
		addToGroup("funcgen-release");
		setDescription("Check that all of certain types of objects have analysis_descriptions; also check that displayable field is set.");
		setTeamResponsible(Team.FUNCGEN);

	}

	// ------------------------------------------------------------------------------
	protected String[] tableNames() {

		return types;

	}

} // FuncgenAnalysisDescription

@@ -2052,22 +2052,8 @@
 ure%22
-, %22alignment%22 
 %7D; /

Remove alignments type from FuncgenAnalysisDescription