/*
 Copyright (C) 2004 EBI, GRL

 This library is free software; you can redistribute it and/or
 modify it under the terms of the GNU Lesser General Public
 License as published by the Free Software Foundation; either
 version 2.1 of the License, or (at your option) any later version.

 This library is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 Lesser General Public License for more details.

 You should have received a copy of the GNU Lesser General Public
 License along with this library; if not, write to the Free Software
 Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 */

package org.ensembl.healthcheck.testcase.generic;

import java.sql.Connection;

import org.ensembl.healthcheck.DatabaseRegistryEntry;
import org.ensembl.healthcheck.ReportManager;
import org.ensembl.healthcheck.Team;
import org.ensembl.healthcheck.testcase.SingleDatabaseTestCase;
import org.ensembl.healthcheck.util.DBUtils;
import org.ensembl.healthcheck.util.Utils;

/**
 * An EnsEMBL Healthcheck test case that looks for correct analysis table
 * structure
 */

public class AnalysisLogicName extends SingleDatabaseTestCase {

  /**
   * Create the analysis table.
   */
  public AnalysisLogicName() {

    addToGroup("post_genebuild");
    addToGroup("release");
    addToGroup("compara-ancestral");
    addToGroup("id_mapping");
    addToGroup("pre-compara-handover");
    addToGroup("post-compara-handover");

    setDescription("Check the analysis data is correct.");
    setSecondTeamResponsible(Team.GENEBUILD);

  }

  /**
   * Check the data in the analysis table.
   * 
   * @param dbre
   *          The database to use.
   * @return true if all data is there and in the correct format.
   */

  public boolean run(DatabaseRegistryEntry dbre) {

    boolean result = true;
    Connection con = dbre.getConnection();

    result &= checkLowerCase(con);

    return result;
  }


  // ---------------------------------------------------------------------

  /**
   * Check all logic names are lower case
   */

  private boolean checkLowerCase(Connection con) {

    boolean result = true;

    String[] logicNames = DBUtils
        .getColumnValues(con,
            "SELECT logic_name FROM analysis where BINARY logic_name != lower(logic_name) ");
    if (logicNames.length > 0) {
      ReportManager.problem(
          this,
          con,
          "The following logic_names are not lower case: "
              + Utils.arrayToString(logicNames, ","));
    }
    else {
      ReportManager.correct(this, con, "All logic names are lower case");
    }

    return result;
  }

}

@@ -2609,16 +2609,40 @@
  %22,%22));%0A
+        result = false;%0A
     %7D%0A  

set result to false when the test fails