/*
 * #%L
 * ImgLib2: a general-purpose, multidimensional image processing library.
 * %%
 * Copyright (C) 2009 - 2013 Stephan Preibisch, Tobias Pietzsch, Barry DeZonia,
 * Stephan Saalfeld, Albert Cardona, Curtis Rueden, Christian Dietz, Jean-Yves
 * Tinevez, Johannes Schindelin, Lee Kamentsky, Larry Lindsey, Grant Harris,
 * Mark Hiner, Aivar Grislis, Martin Horn, Nick Perry, Michael Zinsmaier,
 * Steffen Jaensch, Jan Funke, Mark Longair, and Dimiter Prodanov.
 * %%
 * Redistribution and use in source and binary forms, with or without
 * modification, are permitted provided that the following conditions are met:
 * 
 * 1. Redistributions of source code must retain the above copyright notice,
 *    this list of conditions and the following disclaimer.
 * 2. Redistributions in binary form must reproduce the above copyright notice,
 *    this list of conditions and the following disclaimer in the documentation
 *    and/or other materials provided with the distribution.
 * 
 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
 * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
 * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
 * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
 * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
 * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
 * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
 * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
 * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
 * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 * POSSIBILITY OF SUCH DAMAGE.
 * 
 * The views and conclusions contained in the software and documentation are
 * those of the authors and should not be interpreted as representing official
 * policies, either expressed or implied, of any organization.
 * #L%
 */

package net.imglib2.meta;

import java.util.List;

/**
 * Abstract base class for {@link CalibratedSpace}.
 * 
 * @author Curtis Rueden
 */
public abstract class AbstractCalibratedSpace<A extends CalibratedAxis>
 extends
	AbstractTypedSpace<A> implements CalibratedSpace<A>
{

	private final double[] calibration;

	public AbstractCalibratedSpace(final int numDims) {
		super(numDims);
		calibration = new double[numDims];
		for (int i = 0; i < calibration.length; i++)
			calibration[i] = Double.NaN;
	}

	public AbstractCalibratedSpace(final A... axes) {
		super(axes);
		calibration = new double[axes.length];
		for (int i = 0; i < calibration.length; i++)
			calibration[i] = Double.NaN;
	}

	public AbstractCalibratedSpace(final List<A> axes) {
		super(axes);
		calibration = new double[axes.size()];
		for (int i = 0; i < calibration.length; i++)
			calibration[i] = Double.NaN;
	}

	@Override
	public double calibration(int d) {
		return calibration[d];
	}

	@Override
	public void calibration(double[] cal) {
		for (int i = 0; i < cal.length; i++)
			cal[i] = calibration(i);
	}

	@Override
	public void calibration(float[] cal) {
		for (int i = 0; i < cal.length; i++)
			cal[i] = (float) calibration(i);
	}

	@Override
	public void setCalibration(double cal, int d) {
		calibration[d] = cal;
	}

	@Override
	public void setCalibration(double[] cal) {
		for (int i = 0; i < cal.length; i++)
			setCalibration(cal[i], i);
	}

	@Override
	public void setCalibration(float[] cal) {
		for (int i = 0; i < cal.length; i++)
			setCalibration(cal[i], i);
	}

	@Override
	public String unit(int d) {
		return axis(d).unit();
	}

	@Override
	public void setUnit(String unit, int d) {
		axis(d).setUnit(unit);
	}

}

@@ -2287,46 +2287,8 @@
 %0A%7B%0A%0A
-%09private final double%5B%5D calibration;%0A%0A
 %09pub
@@ -2359,504 +2359,148 @@
 );%0A%09
-%09calibration = new double%5BnumDims%5D;%0A%09%09for (int i = 0; i %3C calibration.length; i++)%0A%09%09%09calibration%5Bi%5D = Double.NaN;%0A%09%7D%0A%0A%09public AbstractCalibratedSpace(final A... axes) %7B%0A%09%09super(axes);%0A%09%09calibration = new double%5Baxes.length%5D;%0A%09%09for (int i = 0; i %3C calibration.length; i++)%0A%09%09%09calibration%5Bi%5D = Double.NaN;%0A%09%7D%0A%0A%09public AbstractCalibratedSpace(final List%3CA%3E axes) %7B%0A%09%09super(axes);%0A%09%09calibration = new double%5Baxes.size()%5D;%0A%09%09for (int i = 0; i %3C calibration.length; i++)%0A%09%09%09calibration%5Bi%5D = Double.NaN
+%7D%0A%0A%09public AbstractCalibratedSpace(final A... axes) %7B%0A%09%09super(axes);%0A%09%7D%0A%0A%09public AbstractCalibratedSpace(final List%3CA%3E axes) %7B%0A%09%09super(axes)
 ;%0A%09%7D
@@ -2557,16 +2557,24 @@
 %09return 
+axis(d).
 calibrat
@@ -2576,19 +2576,18 @@
 ibration
-%5Bd%5D
+()
 ;%0A%09%7D%0A%0A%09@
@@ -2899,17 +2899,28 @@
  d) %7B%0A%09%09
-c
+axis(d).setC
 alibrati
@@ -2925,17 +2925,13 @@
 tion
-%5Bd%5D = 
+(
 cal
+)
 ;%0A%09%7D

Remove old invalid calibration double[] array