@@ -0,0 +1,2926 @@
+/*%0A * #%25L%0A * SCIFIO support for the OME data model, including OME-XML and OME-TIFF.%0A * %25%25%0A * Copyright (C) 2013 - 2014 Board of Regents of the University of%0A * Wisconsin-Madison%0A * %25%25%0A * Redistribution and use in source and binary forms, with or without%0A * modification, are permitted provided that the following conditions are met:%0A * %0A * 1. Redistributions of source code must retain the above copyright notice,%0A *    this list of conditions and the following disclaimer.%0A * 2. Redistributions in binary form must reproduce the above copyright notice,%0A *    this list of conditions and the following disclaimer in the documentation%0A *    and/or other materials provided with the distribution.%0A * %0A * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS %22AS IS%22%0A * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE%0A * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE%0A * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE%0A * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR%0A * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF%0A * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS%0A * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN%0A * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)%0A * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE%0A * POSSIBILITY OF SUCH DAMAGE.%0A * #L%25%0A */%0A%0Apackage io.scif.bf.ome;%0A%0Aimport loci.formats.ome.OMEXMLMetadata;%0Aimport io.scif.Metadata;%0Aimport io.scif.bf.BioFormatsFormat;%0Aimport io.scif.ome.OMEMetadata;%0Aimport io.scif.ome.translators.ToOMETranslator;%0A%0Aimport org.scijava.Priority;%0Aimport org.scijava.plugin.Plugin;%0A%0A/**%0A * Container class for translators between BioFormats and OME formats.%0A * %0A * @author Mark Hiner hinerm at gmail.com%0A */%0Apublic class BioFormatsTranslator %7B%0A%0A%09/**%0A%09 * Translator class from %7B@link io.scif.bf.BioFormatsFormat.Metadata%7D to%0A%09 * %7B@link OMEMetadata%7D%0A%09 * %3Cp%3E%0A%09 * NB: Plugin priority is set to %22high + 1%22 to be selected over the%0A%09 * SCIFIO-OME-XML translators.%0A%09 * %3C/p%3E%0A%09 * %0A%09 * @author Mark Hiner%0A%09 */%0A%09@Plugin(type = ToOMETranslator.class, priority = Priority.HIGH_PRIORITY + 1)%0A%09public static class BioFormatsOMETranslator extends%0A%09%09ToOMETranslator%3CBioFormatsFormat.Metadata%3E%0A%09%7B%0A%0A%09%09// -- Translator API Methods --%0A%0A%09%09@Override%0A%09%09public Class%3C? extends Metadata%3E source() %7B%0A%09%09%09return BioFormatsFormat.Metadata.class;%0A%09%09%7D%0A%0A%09%09@Override%0A%09%09public Class%3C? extends Metadata%3E dest() %7B%0A%09%09%09return OMEMetadata.class;%0A%09%09%7D%0A%0A%09%09@Override%0A%09%09protected void translateOMEXML(final BioFormatsFormat.Metadata source,%0A%09%09%09final OMEMetadata dest)%0A%09%09%7B%0A%09%09%09// Just copy the root over%0A%09%09%09Object root = source.getReader().getMetadataStore();%0A%09%09%09if (root != null && root instanceof ome.xml.meta.OMEXMLMetadata) %7B%0A%09%09%09%09dest.setRoot((OMEXMLMetadata) root);%0A%09%09%09%7D%0A%09%09%7D%0A%09%7D%0A%7D%0A

Add BioFormatsTranslator