@@ -0,0 +1,1225 @@
+/**%0A * %0A */%0Apackage uk.ac.ebi.ae3.indexbuilder;%0A%0Aimport static org.junit.Assert.*;%0A%0Aimport org.junit.After;%0Aimport org.junit.AfterClass;%0Aimport org.junit.Before;%0Aimport org.junit.BeforeClass;%0Aimport org.junit.Test;%0A%0A/**%0A * @author mdylag%0A *%0A */%0Apublic class IndexBuilderTest%0A%7B%0A%09%0A%09/**%0A%09 * @throws java.lang.Exception%0A%09 */%0A%09@BeforeClass%0A%09public static void setUpBeforeClass() throws Exception%0A%09%7B%0A%09%7D%0A%09%0A%09/**%0A%09 * @throws java.lang.Exception%0A%09 */%0A%09@AfterClass%0A%09public static void tearDownAfterClass() throws Exception%0A%09%7B%0A%09%7D%0A%09%0A%09/**%0A%09 * @throws java.lang.Exception%0A%09 */%0A%09@Before%0A%09public void setUp() throws Exception%0A%09%7B%0A%09%7D%0A%09%0A%09/**%0A%09 * @throws java.lang.Exception%0A%09 */%0A%09@After%0A%09public void tearDown() throws Exception%0A%09%7B%0A%09%7D%0A%09%0A%09/**%0A%09 * Test method for %7B@link uk.ac.ebi.ae3.indexbuilder.IndexBuilder#parse(java.lang.String%5B%5D)%7D.%0A%09 */%0A%09@Test%0A%09public void testParse()%0A%09%7B%0A%09%09%0A%09%09fail(%22Not yet implemented%22);%0A%09%7D%0A%09%0A%09/**%0A%09 * Test method for %7B@link uk.ac.ebi.ae3.indexbuilder.IndexBuilder#run()%7D.%0A%09 */%0A%09@Test%0A%09public void testRun()%0A%09%7B%0A%09%09fail(%22Not yet implemented%22);%0A%09%7D%0A%09%0A%09/**%0A%09 * Test method for %7B@link uk.ac.ebi.ae3.indexbuilder.IndexBuilder#main(java.lang.String%5B%5D)%7D.%0A%09 */%0A%09@Test%0A%09public void testMain()%0A%09%7B%0A%09%09fail(%22Not yet implemented%22);%0A%09%7D%0A%09%0A%7D%0A

Add libraries commons-cli, commons-colection, commons-configuration Created service layer: uk.ac.ebi.ae3.indexbuilder.service.ConfigurationService uk.ac.ebi.ae3.indexbuilder.service.IndexBuilderservice Change structure of resources for the maven build (did not maven conf yet).