@@ -0,0 +1,1292 @@
+package com.bina.varsim.fastqLiftover;%0A%0Aimport com.bina.varsim.fastqLiftover.types.GenomeInterval;%0Aimport com.bina.varsim.fastqLiftover.types.GenomeLocation;%0Aimport com.bina.varsim.fastqLiftover.types.MapBlock;%0Aimport htsjdk.tribble.annotation.Strand;%0Aimport junit.framework.Test;%0Aimport junit.framework.TestCase;%0Aimport junit.framework.TestSuite;%0A%0A/**%0A * Unit test for GenomeLocation%0A */%0Apublic class GenomeIntervalTest%0A        extends TestCase %7B%0A    /**%0A     * Create the test case%0A     *%0A     * @param testName name of the test case%0A     */%0A    public GenomeIntervalTest(String testName) %7B%0A        super(testName);%0A    %7D%0A%0A    /**%0A     * @return the suite of tests being tested%0A     */%0A    public static Test suite() %7B%0A        return new TestSuite(GenomeIntervalTest.class);%0A    %7D%0A%0A    public void testGenomeLocationSimple() %7B%0A        final String intervalString = %221,100,200,POSITIVE,INV,%22;%0A        final GenomeInterval genomeInterval = new GenomeInterval(intervalString);%0A%0A        assertEquals(%221%22, genomeInterval.getChromosome());%0A        assertEquals(100, genomeInterval.getStart());%0A        assertEquals(200, genomeInterval.getEnd());%0A        assertEquals(Strand.POSITIVE, genomeInterval.getStrand());%0A        assertEquals(MapBlock.BlockType.INV, genomeInterval.getFeature());%0A    %7D%0A%7D%0A

test for genomeinterval