package org.yeastrc.proxl.gen_import_xml.xquest.constants;

public class AnnotationNames_Constants {

	//  PSM
	
	//  Filterable
	
	public static final String ANNOTATION_NAME_FDR = "FDR";
	public static final String ANNOTATION_DESCRIPTION_FDR = "The minimum false discovery among all predictions with this score or better.";
	

}

@@ -53,16 +53,46 @@
 tants;%0A%0A
+import java.math.BigDecimal;%0A%0A
 public c
@@ -110,13 +110,12 @@
 tion
-Names
+Type
 _Con
@@ -153,16 +153,43 @@
 rable%0A%09%0A
+%09//  FDR: Smaller better%0A%09%0A
 %09public 
@@ -299,88 +299,921 @@
  = %22
-The minimum false discovery among all predictions with this score or better.%22;%0A%09%0A
+False Discovery Rate%22;%0A%09%0A%09//  Rank: Smaller better%0A%0A%09public static final String ANNOTATION_NAME_RANK = %22Rank%22;%0A%09public static final String ANNOTATION_DESCRIPTION_RANK = %22PSM Rank for Scan%22;%0A%0A%09//  Score: Bigger better%0A%09%0A%09public static final String ANNOTATION_NAME_XQUEST_SCORE = %22Score%22;%0A%09public static final String ANNOTATION_DESCRIPTION_XQUEST_SCORE = %22XQuest score%22;%0A%09%0A%0A%09//  Descriptive%0A%0A%09public static final String ANNOTATION_NAME_OBS_MASS = %22Obs. mass%22;%0A%09public static final String ANNOTATION_DESCRIPTION_OBS_MASS = %22Mass of precursor%22;%0A%0A%09public static final String ANNOTATION_NAME_CALC_MASS = %22Calc. mass%22;%0A%09public static final String ANNOTATION_DESCRIPTION_CALC_MASS = %22Calculated mass for PSM%22;%0A%0A%09// NO:  Charge, Obs. m/z%0A%09%0A%09%0A%09//  Default Filter Cutoffs%0A%0A%09public static final BigDecimal PSM_FDR_DEFAULT = new BigDecimal( %220.01%22 );%0A%09%0A%0A%09public static final BigDecimal PSM_RANK_DEFAULT = new BigDecimal( %221%22 );
 %0A%7D%0A

Add Annotations.