/*
 * Licensed to the Apache Software Foundation (ASF) under one or more
 * contributor license agreements.  See the NOTICE file distributed with
 * this work for additional information regarding copyright ownership.
 * The ASF licenses this file to You under the Apache License, Version 2.0
 * (the "License"); you may not use this file except in compliance with
 * the License.  You may obtain a copy of the License at
 *
 *      http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
package org.apache.camel.maven.packaging;

import java.io.File;
import java.io.FileInputStream;
import java.io.IOError;
import java.io.IOException;
import java.io.InputStream;
import java.net.URI;
import java.nio.file.FileSystemAlreadyExistsException;
import java.nio.file.FileSystems;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.ArrayList;
import java.util.Collection;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.TreeSet;
import java.util.stream.Stream;

import javax.xml.bind.annotation.XmlEnum;
import javax.xml.bind.annotation.XmlRootElement;
import javax.xml.bind.annotation.XmlType;

import org.apache.maven.plugin.MojoExecutionException;
import org.apache.maven.plugin.MojoFailureException;
import org.apache.maven.plugins.annotations.LifecyclePhase;
import org.apache.maven.plugins.annotations.Mojo;
import org.apache.maven.plugins.annotations.Parameter;
import org.jboss.jandex.AnnotationInstance;
import org.jboss.jandex.AnnotationTarget;
import org.jboss.jandex.ClassInfo;
import org.jboss.jandex.DotName;
import org.jboss.jandex.Index;
import org.jboss.jandex.IndexReader;
import org.jboss.jandex.IndexView;
import org.jboss.jandex.Indexer;

/**
 * Analyses the Camel plugins in a project and generates extra descriptor
 * information for easier auto-discovery in Camel.
 */
@Mojo(name = "generate-jaxb-list", threadSafe = true, defaultPhase = LifecyclePhase.PROCESS_CLASSES)
public class PackageJaxbMojo extends AbstractGeneratorMojo {

    /**
     * The name of the index file. Default's to
     * 'target/classes/META-INF/jandex.idx'
     */
    @Parameter(defaultValue = "${project.build.directory}/META-INF/jandex.idx")
    protected File index;

    /**
     * The output directory for generated components file
     */
    @Parameter(defaultValue = "${project.basedir}/src/generated/resources")
    protected File jaxbIndexOutDir;

    /**
     * Execute goal.
     *
     * @throws MojoExecutionException execution of the main class or one of the
     *             threads it generated failed.
     * @throws MojoFailureException something bad happened...
     */
    @Override
    public void execute() throws MojoExecutionException, MojoFailureException {
        if (index == null) {
            index = new File(project.getBuild().getDirectory(), "META-INF/jandex.idx");
        }
        if (jaxbIndexOutDir == null) {
            jaxbIndexOutDir = new File(project.getBasedir(), "src/generated/resources");
        }
        List<String> locations = new ArrayList<>();
        locations.add(project.getBuild().getOutputDirectory());

        processClasses(createIndex(locations));

        Path path = jaxbIndexOutDir.toPath();
        addResourceDirectory(path);
    }

    private void processClasses(IndexView index) {
        Map<String, Set<String>> byPackage = new HashMap<>();

        Stream.of(XmlRootElement.class, XmlEnum.class, XmlType.class).map(Class::getName).map(DotName::createSimple).map(index::getAnnotations).flatMap(Collection::stream)
            .map(AnnotationInstance::target).map(AnnotationTarget::asClass).map(ClassInfo::name).map(DotName::toString).forEach(name -> {
                int idx = name.lastIndexOf('.');
                String p = name.substring(0, idx);
                String c = name.substring(idx + 1);
                byPackage.computeIfAbsent(p, s -> new TreeSet<>()).add(c);
            });

        Path jaxbIndexDir = jaxbIndexOutDir.toPath();
        int count = 0;
        for (Map.Entry<String, Set<String>> entry : byPackage.entrySet()) {
            String fn = entry.getKey().replace('.', '/') + "/jaxb.index";
            if (project.getCompileSourceRoots().stream().map(Paths::get).map(p -> p.resolve(fn)).anyMatch(Files::isRegularFile)) {
                continue;
            }
            StringBuilder sb = new StringBuilder();
            sb.append("# " + GENERATED_MSG + NL);
            for (String s : entry.getValue()) {
                sb.append(s);
                sb.append(NL);
            }
            updateResource(jaxbIndexDir, fn, sb.toString());
        }

        if (count > 0) {
            getLog().info("Generated " + jaxbIndexOutDir + " containing " + count + " jaxb.index elements");
        }
    }

    private IndexView createIndex(List<String> locations) throws MojoExecutionException {
        if (index.exists()) {
            try (InputStream is = new FileInputStream(index)) {
                IndexReader r = new IndexReader(is);
                return r.read();
            } catch (IOException e) {
                throw new MojoExecutionException("Error", e);
            }
        }
        try {
            Indexer indexer = new Indexer();
            locations.stream().map(this::asFolder).filter(Files::isDirectory).flatMap(this::walk).filter(Files::isRegularFile)
                .filter(p -> p.getFileName().toString().endsWith(".class")).forEach(p -> index(indexer, p));
            return indexer.complete();
        } catch (IOError e) {
            throw new MojoExecutionException("Error", e);
        }
    }

    private Path asFolder(String p) {
        if (p.endsWith(".jar")) {
            File fp = new File(p);
            try {
                Map<String, String> env = new HashMap<>();
                return FileSystems.newFileSystem(URI.create("jar:" + fp.toURI().toString()), env).getPath("/");
            } catch (FileSystemAlreadyExistsException e) {
                return FileSystems.getFileSystem(URI.create("jar:" + fp.toURI().toString())).getPath("/");
            } catch (IOException e) {
                throw new IOError(e);
            }
        } else {
            return Paths.get(p);
        }
    }

    private Stream<Path> walk(Path p) {
        try {
            return Files.walk(p);
        } catch (IOException e) {
            throw new IOError(e);
        }
    }

    private void index(Indexer indexer, Path p) {
        try (InputStream is = Files.newInputStream(p)) {
            indexer.index(is);
        } catch (IOException e) {
            throw new IOError(e);
        }
    }

}

@@ -4966,24 +4966,45 @@
 oString());%0A
+            count++;%0A
         %7D%0A%0A 

Fix logging as reported by lgtm.com