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package org.mskcc.cbio.oncokb.model;

import java.util.List;

/**
 *
 * @author jiaojiao
 */
public class PortalAlteration {
    
    private String cancertype;
    private Integer numberOfSamples;
    private Integer entrezID;
    private String proteinChange;
    private Integer startPosition;
    private Integer endPosition;
    private List<String> variants; 
    
    public Integer getStartPosition() {
        return startPosition;
    }

    public void setStartPosition(Integer startPosition) {
        this.startPosition = startPosition;
    }

    public Integer getEndPosition() {
        return endPosition;
    }

    public void setEndPosition(Integer endPosition) {
        this.endPosition = endPosition;
    }
    

    public String getCancertype() {
        return cancertype;
    }

    public void setCancertype(String cancertype) {
        this.cancertype = cancertype;
    }

    public Integer getNumberOfSamples() {
        return numberOfSamples;
    }

    public void setNumberOfSamples(Integer numberOfSamples) {
        this.numberOfSamples = numberOfSamples;
    }

    public Integer getEntrezID() {
        return entrezID;
    }

    public void setEntrezID(Integer entrezID) {
        this.entrezID = entrezID;
    }

    public String getProteinChange() {
        return proteinChange;
    }

    public void setProteinChange(String proteinChange) {
        this.proteinChange = proteinChange;
    }

    public List<String> getVariants() {
        return variants;
    }

    public void setVariants(List<String> variants) {
        this.variants = variants;
    }
    
    
    
}

@@ -388,32 +388,25 @@
 private 
-Integer entrezID
+Gene gene
 ;%0A    pr
@@ -1262,33 +1262,32 @@
 fSamples;%0A    %7D%0A
-%0A
     public Integ
@@ -1285,27 +1285,20 @@
 lic 
-Integer getEntrezID
+Gene getGene
 () %7B
@@ -1313,24 +1313,20 @@
  return 
+g
 en
-trezID
+e
 ;%0A    %7D%0A
@@ -1349,33 +1349,22 @@
  set
-EntrezID(Integer entrezID
+Gene(Gene gene
 ) %7B%0A
@@ -1380,35 +1380,27 @@
 his.
+g
 en
-trezID
+e
  = 
+g
 en
-trezID
+e
 ;%0A    %7D%0A
 %0A   
@@ -1387,33 +1387,32 @@
 e = gene;%0A    %7D%0A
-%0A
     public Strin

use Gene object instead of entrezID