/*
 * Parse command-line options and run the SNPrank algorithm.
 * Authors:  Brett McKinney and Nick Davis
 * Email:  brett.mckinney@gmail.com, nick@nickdavis.name
 */
public class snprank {
	public static void main(String[] args) {
		
		if(args.length != 3) {
			System.out.println("Usage: java snprank matrix.txt gamma output.txt");
			System.exit(1);
		}
		
		SNPrank full_data = new SNPrank(args[0]);		
		full_data.snprank(full_data.getHeader(), full_data.getData(), args[1], args[2]);
	}
}

@@ -363,16 +363,20 @@
 %09SNPrank
+Data
  full_da
@@ -391,16 +391,20 @@
  SNPrank
+Data
 (args%5B0%5D

Update SNPrank -> SNPrankData in main class