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MDU6SXNzdWU4NDQ2NzMyNDQ=
| 2,146 |
Dataset file size on disk is very large with 3D Array
|
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[
"Hi ! In the arrow file we store all the integers as uint8.\r\nSo your arrow file should weigh around `height x width x n_channels x n_images` bytes.\r\n\r\nWhat feature type do your TFDS dataset have ?\r\n\r\nIf it uses a `tfds.features.Image` type, then what is stored is the encoded data (as png or jpg for example). Since these encodings are made for compression, the resulting tfrecord is smaller that the arrow file.\r\n\r\nWe are working on adding a similar feature in `datasets`: the ability to store the encoded data instead of the raw integers for images, but also for audio data. This way, arrow files will have similar sizes as tfrecords for images.",
"Thanks for the prompt response. You're right about the encoding, I have the `tfds.features.Image` feature type you mentioned.\r\nHowever, as described in the `dataset_info.json`, my dataset is made of 1479 (224x224x3) images. 1479 x 224 x 224 x 3 = 222630912 bytes which is far from the actual size 520803408 bytes. \r\n\r\nAnyway I look forward to the Image feature type in `datasets`. ",
"@lhoestq I changed the data structure so I have a 2D Array feature type instead of a 3D Array by grouping the two last dimensions ( a 224x672 2D Array instead of a 224x224x3 3D Array). The file size is now 223973964 bytes, nearly half the previous size! Which is around of what I would expect.\r\nI found similar behavior in existing `datasets` collection, when comparing black and white vs color image, for example MNIST vs CIFAR. ",
"Interesting !\r\nThis may be because of the offsets that are stored with the array data.\r\n\r\nCurrently the offsets are stored even if the `shape` of the arrays is fixed. This was needed because of some issues with pyarrow a few months ago. I think these issues have been addressed now, so we can probably try to remove them to make the file lighter.\r\n\r\nIdeally in your case the floats data should be 220 MB for both Array2D and Array3D",
"Yeah for sure, can you be a bit more specific about where the offset is stored in the code base ? And any reference to pyarrow issues if you have some. I would be very interested in contributing to `datasets` by trying to fix this issue. ",
"Pyarrow has two types of lists: variable length lists and fixed size lists.\r\nCurrently we store the ArrayXD data as variable length lists. They take more disk space because they must store both actual data and offsets.\r\nIn the `datasets` code this is done here:\r\n\r\nhttps://github.com/huggingface/nlp/blob/dbac87c8a083f806467f5afc4ec9b401a7e4c15c/src/datasets/features.py#L346-L352\r\n\r\nTo use a fixed length list, one should use the `list_size` argument of `pyarrow.list_()`.\r\nI believe this would work directly modulo some changes in the numpy conversion here:\r\n\r\nhttps://github.com/huggingface/nlp/blob/dbac87c8a083f806467f5afc4ec9b401a7e4c15c/src/datasets/features.py#L381-L395"
] | 2021-03-30T14:46:09 | 2021-04-16T13:07:02 | null |
NONE
| null | null | null |
Hi,
I have created my own dataset using the provided dataset loading script. It is an image dataset where images are stored as 3D Array with dtype=uint8.
The actual size on disk is surprisingly large. It takes 520 MB. Here is some info from `dataset_info.json`.
`{
"description": "",
"citation": "",
"homepage": "",
"license": "",
"features": {
"image": {
"shape": [224, 224, 3],
"dtype": "uint8",
"id": null,
"_type": "Array3D",
}
},
"post_processed": null,
"supervised_keys": null,
"builder_name": "shot_type_image_dataset",
"config_name": "default",
"version": {
"version_str": "0.0.0",
"description": null,
"major": 0,
"minor": 0,
"patch": 0,
},
"splits": {
"train": {
"name": "train",
"num_bytes": 520803408,
"num_examples": 1479,
"dataset_name": "shot_type_image_dataset",
}
},
"download_checksums": {
"": {
"num_bytes": 16940447118,
"checksum": "5854035705efe08b0ed8f3cf3da7b4d29cba9055c2d2d702c79785350d72ee03",
}
},
"download_size": 16940447118,
"post_processing_size": null,
"dataset_size": 520803408,
"size_in_bytes": 17461250526,
}`
I have created the same dataset with tensorflow_dataset and it takes only 125MB on disk.
I am wondering, is it normal behavior ? I understand `Datasets` uses Arrow for serialization wheres tf uses TF Records.
This might be a problem for large dataset.
Thanks for your help.
|
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MDU6SXNzdWU4NDQzNTIwNjc=
| 2,144 |
Loading wikipedia 20200501.en throws pyarrow related error
|
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[
"That's how I loaded the dataset\r\n```python\r\nfrom datasets import load_dataset\r\nds = load_dataset('wikipedia', '20200501.en', cache_dir='/usr/local/workspace/NAS_NLP/cache')\r\n```",
"Hi ! It looks like the arrow file in the folder\r\n`/usr/local/workspace/NAS_NLP/cache/wikipedia/20200501.en/1.0.0/50aa706aa417bb77d910ad61211cc672c0ef3e0f224225a5e0a18277ade8b931` is corrupted.\r\n\r\nCan you take a look and check that it's 18.3GB ?\r\n\r\nIf not, then maybe you need to redownload it:\r\n```python\r\nfrom datasets import load_dataset\r\nds = load_dataset('wikipedia', '20200501.en', cache_dir='/usr/local/workspace/NAS_NLP/cache', download_mode=\"force_redownload\")\r\n```",
"> Hi ! It looks like the arrow file in the folder\r\n> `/usr/local/workspace/NAS_NLP/cache/wikipedia/20200501.en/1.0.0/50aa706aa417bb77d910ad61211cc672c0ef3e0f224225a5e0a18277ade8b931` is corrupted.\r\n> \r\n> Can you take a look and check that it's 18.3GB ?\r\n> \r\n> If not, then maybe you need to redownload it:\r\n> \r\n> ```python\r\n> from datasets import load_dataset\r\n> ds = load_dataset('wikipedia', '20200501.en', cache_dir='/usr/local/workspace/NAS_NLP/cache', download_mode=\"force_redownload\")\r\n> ```\r\n\r\nHi Ihoestq, thanks for the reply! Actually i think my issue is i couldn't download the dataset beyond 10.7G. It feels like the whole dataset is split into different volumes and after the first one was downloaded it crashed before proceeding to the next one. I did try 'force_redownload' mode but still got the same issue.",
"I just tried on my side and got no issues.\r\nWhen downloading the dataset again, did it crash at 10.7GB as well ?",
"> I just tried on my side and got no issues.\r\n> When downloading the dataset again, did it crash at 10.7GB as well ?\r\n\r\nYes i have tried it multiple times on different machines. I am wondering if you could share the screenshot of your dependency versions and i will try to make them the same as yours?",
"I tried using `datasets` from `master` on macos with python 3.7.2\r\nI also have `requests==2.23.0` and `tqdm==4.45.0`."
] | 2021-03-30T10:38:31 | 2021-04-01T09:21:17 | null |
NONE
| null | null | null |
**Problem description**
I am getting the following error when trying to load wikipedia/20200501.en dataset.
**Error log**
Downloading and preparing dataset wikipedia/20200501.en (download: 16.99 GiB, generated: 17.07 GiB, post-processed: Unknown size, total: 34.06 GiB) to /usr/local/workspace/NAS_NLP/cache/wikipedia/20200501.en/1.0.0/50aa706aa417bb77d910ad61211cc672c0ef3e0f224225a5e0a18277ade8b931...
Downloading: 100%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 14.6k/14.6k [00:00<00:00, 5.41MB/s]
Downloading: 59%|███████████████████████████████████████████████████████████████████████████████████████▊ | 10.7G/18.3G [11:30<08:08, 15.5MB/s]
Dataset wikipedia downloaded and prepared to /usr/local/workspace/NAS_NLP/cache/wikipedia/20200501.en/1.0.0/50aa706aa417bb77d910ad61211cc672c0ef3e0f224225a5e0a18277ade8b931. Subsequent calls will reuse this data.
Traceback (most recent call last):
File "load_wiki.py", line 2, in <module>
ds = load_dataset('wikipedia', '20200501.en', cache_dir='/usr/local/workspace/NAS_NLP/cache')
File "/usr/local/lib/python3.6/dist-packages/datasets/load.py", line 751, in load_dataset
ds = builder_instance.as_dataset(split=split, ignore_verifications=ignore_verifications, in_memory=keep_in_memory)
File "/usr/local/lib/python3.6/dist-packages/datasets/builder.py", line 746, in as_dataset
map_tuple=True,
File "/usr/local/lib/python3.6/dist-packages/datasets/utils/py_utils.py", line 204, in map_nested
_single_map_nested((function, obj, types, None, True)) for obj in tqdm(iterable, disable=disable_tqdm)
File "/usr/local/lib/python3.6/dist-packages/datasets/utils/py_utils.py", line 204, in <listcomp>
_single_map_nested((function, obj, types, None, True)) for obj in tqdm(iterable, disable=disable_tqdm)
File "/usr/local/lib/python3.6/dist-packages/datasets/utils/py_utils.py", line 142, in _single_map_nested
return function(data_struct)
File "/usr/local/lib/python3.6/dist-packages/datasets/builder.py", line 763, in _build_single_dataset
in_memory=in_memory,
File "/usr/local/lib/python3.6/dist-packages/datasets/builder.py", line 835, in _as_dataset
in_memory=in_memory,
File "/usr/local/lib/python3.6/dist-packages/datasets/arrow_reader.py", line 215, in read
return self.read_files(files=files, original_instructions=instructions, in_memory=in_memory)
File "/usr/local/lib/python3.6/dist-packages/datasets/arrow_reader.py", line 236, in read_files
pa_table = self._read_files(files, in_memory=in_memory)
File "/usr/local/lib/python3.6/dist-packages/datasets/arrow_reader.py", line 171, in _read_files
pa_table: pa.Table = self._get_dataset_from_filename(f_dict, in_memory=in_memory)
File "/usr/local/lib/python3.6/dist-packages/datasets/arrow_reader.py", line 302, in _get_dataset_from_filename
pa_table = ArrowReader.read_table(filename, in_memory=in_memory)
File "/usr/local/lib/python3.6/dist-packages/datasets/arrow_reader.py", line 324, in read_table
pa_table = f.read_all()
File "pyarrow/ipc.pxi", line 544, in pyarrow.lib.RecordBatchReader.read_all
File "pyarrow/error.pxi", line 99, in pyarrow.lib.check_status
OSError: Expected to be able to read 9176784 bytes for message body, got 4918712
**Detailed version info**
datasets==1.5.0
- dataclasses [required: Any, installed: 0.8]
- dill [required: Any, installed: 0.3.3]
- fsspec [required: Any, installed: 0.8.7]
- importlib-metadata [required: Any, installed: 1.7.0]
- zipp [required: >=0.5, installed: 3.1.0]
- huggingface-hub [required: <0.1.0, installed: 0.0.7]
- filelock [required: Any, installed: 3.0.12]
- importlib-metadata [required: Any, installed: 1.7.0]
- zipp [required: >=0.5, installed: 3.1.0]
- requests [required: Any, installed: 2.24.0]
- certifi [required: >=2017.4.17, installed: 2020.6.20]
- chardet [required: >=3.0.2,<4, installed: 3.0.4]
- idna [required: >=2.5,<3, installed: 2.6]
- urllib3 [required: >=1.21.1,<1.26,!=1.25.1,!=1.25.0, installed: 1.25.10]
- tqdm [required: Any, installed: 4.49.0]
- importlib-metadata [required: Any, installed: 1.7.0]
- zipp [required: >=0.5, installed: 3.1.0]
- multiprocess [required: Any, installed: 0.70.11.1]
- dill [required: >=0.3.3, installed: 0.3.3]
- numpy [required: >=1.17, installed: 1.17.0]
- pandas [required: Any, installed: 1.1.5]
- numpy [required: >=1.15.4, installed: 1.17.0]
- python-dateutil [required: >=2.7.3, installed: 2.8.0]
- six [required: >=1.5, installed: 1.15.0]
- pytz [required: >=2017.2, installed: 2020.1]
- pyarrow [required: >=0.17.1, installed: 3.0.0]
- numpy [required: >=1.16.6, installed: 1.17.0]
- requests [required: >=2.19.0, installed: 2.24.0]
- certifi [required: >=2017.4.17, installed: 2020.6.20]
- chardet [required: >=3.0.2,<4, installed: 3.0.4]
- idna [required: >=2.5,<3, installed: 2.6]
- urllib3 [required: >=1.21.1,<1.26,!=1.25.1,!=1.25.0, installed: 1.25.10]
- tqdm [required: >=4.27,<4.50.0, installed: 4.49.0]
- xxhash [required: Any, installed: 2.0.0]
|
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| 2,139 |
TypeError when using save_to_disk in a dataset loaded with ReadInstruction split
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[
"Hi !\r\nI think this has been fixed recently on `master`.\r\nCan you try again by installing `datasets` from `master` ?\r\n```\r\npip install git+https://github.com/huggingface/datasets.git\r\n```",
"Hi!\r\n\r\nUsing that version of the code solves the issue. Thanks!"
] | 2021-03-29T18:23:54 | 2021-03-30T09:12:53 | 2021-03-30T09:12:53 |
NONE
| null | null | null |
Hi,
Loading a dataset with `load_dataset` using a split defined via `ReadInstruction` and then saving it to disk results in the following error: `TypeError: Object of type ReadInstruction is not JSON serializable`.
Here is the minimal reproducible example:
```python
from datasets import load_dataset
from datasets import ReadInstruction
data_1 = load_dataset(
"wikiann",
"en",
split="validation",
)
data_1.save_to_disk("temporary_path_1")
print("Save with regular split works.")
data_2 = load_dataset(
"wikiann",
"en",
split=ReadInstruction("validation", to=50, unit="%"),
)
data_2.save_to_disk("temporary_path_2")
```
and the corresponding output:
```
Reusing dataset wikiann (/xxxxx/.cache/huggingface/datasets/wikiann/en/1.1.0/0b11a6fb31eea02f38ca17610657bfba3206100685283014daceb8da291c3be9)
Save with regular split works.
Reusing dataset wikiann (/xxxxx/.cache/huggingface/datasets/wikiann/en/1.1.0/0b11a6fb31eea02f38ca17610657bfba3206100685283014daceb8da291c3be9)
Traceback (most recent call last):
File "bug.py", line 20, in <module>
data_2.save_to_disk("temporary_path_2")
File "/xxxxx/lib/python3.7/site-packages/datasets/arrow_dataset.py", line 645, in save_to_disk
json.dump(state, state_file, indent=2, sort_keys=True)
File "/usr/lib/python3.7/json/__init__.py", line 179, in dump
for chunk in iterable:
File "/usr/lib/python3.7/json/encoder.py", line 431, in _iterencode
yield from _iterencode_dict(o, _current_indent_level)
File "/usr/lib/python3.7/json/encoder.py", line 405, in _iterencode_dict
yield from chunks
File "/usr/lib/python3.7/json/encoder.py", line 438, in _iterencode
o = _default(o)
File "/usr/lib/python3.7/json/encoder.py", line 179, in default
raise TypeError(f'Object of type {o.__class__.__name__} '
TypeError: Object of type ReadInstruction is not JSON serializable
```
Let me know if there is some misuse from my end.
Thanks in advance.
|
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en language data from MLQA dataset is missing
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[
"Hi ! Indeed only the languages of the `translate-train` data are included...\r\nI can't find a link to download the english train set on https://github.com/facebookresearch/MLQA though, do you know where we can download it ?",
"Hi @lhoestq \r\nthank you very much for coming back to me, now I see, you are right, in the link you sent I see split of {split}-context-{context_language}-question-{question_language}.json with context_language=question_language=en, TFDS most probably has extracted english ones from these files as en language files, but translate-train/test do not have en indeed. thanks a lot for the great explanations",
"I close the ticket, since I do not see any en existing, they have trained on \"SQuAD V1.1\" instead. Thanks. "
] | 2021-03-29T10:47:50 | 2021-03-30T10:20:23 | 2021-03-30T10:20:23 |
CONTRIBUTOR
| null | null | null |
Hi
I need mlqa-translate-train.en dataset, but it is missing from the MLQA dataset. could you have a look please? @lhoestq thank you for your help to fix this issue.
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Saving large in-memory datasets with save_to_disk crashes because of pickling
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[
"Hi !\r\nIndeed `save_to_disk` doesn't call pickle anymore. Though the `OverflowError` can still appear for in-memory datasets bigger than 4GB. This happens when doing this for example:\r\n```python\r\nimport pyarrow as pa\r\nimport pickle\r\n\r\narr = pa.array([0] * ((4 * 8 << 30) // 64))\r\ntable = pa.Table.from_arrays([a], names=[\"foo\"])\r\npickle.dumps(table) # fails with an OverflowError\r\npickle.dumps(table, 4) # works !\r\n```\r\nWe'll do the change to use `protocol=4`.\r\n\r\nMoreover I've also seen other users complain about this error\r\n```\r\nstruct.error: 'I' format requires 0 <= number <= 4294967295\r\n```\r\n\r\nIt looks like something related to the 4GB limit as well but I'm not able to reproduce on my side.\r\nDo you think you can provide a script that reproduces the issue ?\r\nHow big is your dataset ? (number of bytes, number of rows)\r\n\r\n",
"Hi!\r\nSo I've managed to created a minimum working (well technically crashing) example for the multiprocessing case, I create a huge list of zeros, like in your example, and then I try to .map(None, num_proc=2) over it, which then crashes, here's the code:\r\n\r\n```python\r\nfrom datasets import Dataset\r\n\r\nif __name__ == '__main__':\r\n ton_of_zeroes = [0] * ((12 * 8 << 30) // 64)\r\n large_dataset = Dataset.from_dict({'col': ton_of_zeroes})\r\n print(\"Start\")\r\n large_dataset.map(function=None, num_proc=2)\r\n print(\"Done - should not print\")\r\n```\r\n\r\nThe amount of zeros could probably be reduced, I haven't tried to minimize it to find the breaking point, I just increased it from your code (which by quick glance I assumed tried to allocate over 4 GiB)\r\n\r\nRunning this results in the following traceback:\r\n\r\n```\r\nParameter 'indices'=[ 0 1 2 ... 805306365 805306366 805306367] of the transform datasets.arrow_dataset.Dataset.select couldn't be hashed properly, a random hash was used instead. Make sure your transforms and parameters are serializable with pickle or dill for the dataset fingerprinting and caching to work. If you reuse this transform, the caching mechanism will consider it to be different from the previous calls and recompute everything. This warning is only showed once. Subsequent hashing failures won't be showed.\r\nTraceback (most recent call last):\r\n File \"./crash_multiproc_pickle.py\", line 7, in <module>\r\n large_dataset.map(function=None, num_proc=2)\r\n File \"/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/datasets/arrow_dataset.py\", line 1485, in map\r\n transformed_shards = [r.get() for r in results]\r\n File \"/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/datasets/arrow_dataset.py\", line 1485, in <listcomp>\r\n transformed_shards = [r.get() for r in results]\r\n File \"/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/multiprocess/pool.py\", line 657, in get\r\n raise self._value\r\n File \"/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/multiprocess/pool.py\", line 431, in _handle_tasks\r\n put(task)\r\n File \"/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/multiprocess/connection.py\", line 209, in send\r\n self._send_bytes(_ForkingPickler.dumps(obj))\r\n File \"/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/multiprocess/reduction.py\", line 54, in dumps\r\n cls(buf, protocol, *args, **kwds).dump(obj)\r\n File \"/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/dill/_dill.py\", line 454, in dump\r\n StockPickler.dump(self, obj)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 437, in dump\r\n self.save(obj)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 504, in save\r\n f(self, obj) # Call unbound method with explicit self\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 789, in save_tuple\r\n save(element)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 504, in save\r\n f(self, obj) # Call unbound method with explicit self\r\n File \"/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/dill/_dill.py\", line 941, in save_module_dict\r\n StockPickler.save_dict(pickler, obj)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 859, in save_dict\r\n self._batch_setitems(obj.items())\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 885, in _batch_setitems\r\n save(v)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 549, in save\r\n self.save_reduce(obj=obj, *rv)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 662, in save_reduce\r\n save(state)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 504, in save\r\n f(self, obj) # Call unbound method with explicit self\r\n File \"/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/dill/_dill.py\", line 941, in save_module_dict\r\n StockPickler.save_dict(pickler, obj)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 859, in save_dict\r\n self._batch_setitems(obj.items())\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 885, in _batch_setitems\r\n save(v)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 549, in save\r\n self.save_reduce(obj=obj, *rv)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 638, in save_reduce\r\n save(args)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 504, in save\r\n f(self, obj) # Call unbound method with explicit self\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 774, in save_tuple\r\n save(element)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 504, in save\r\n f(self, obj) # Call unbound method with explicit self\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 819, in save_list\r\n self._batch_appends(obj)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 846, in _batch_appends\r\n save(tmp[0])\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 549, in save\r\n self.save_reduce(obj=obj, *rv)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 638, in save_reduce\r\n save(args)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 504, in save\r\n f(self, obj) # Call unbound method with explicit self\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 774, in save_tuple\r\n save(element)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 504, in save\r\n f(self, obj) # Call unbound method with explicit self\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 819, in save_list\r\n self._batch_appends(obj)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 846, in _batch_appends\r\n save(tmp[0])\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 549, in save\r\n self.save_reduce(obj=obj, *rv)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 638, in save_reduce\r\n save(args)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 504, in save\r\n f(self, obj) # Call unbound method with explicit self\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 774, in save_tuple\r\n save(element)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 504, in save\r\n f(self, obj) # Call unbound method with explicit self\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 789, in save_tuple\r\n save(element)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 504, in save\r\n f(self, obj) # Call unbound method with explicit self\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 819, in save_list\r\n self._batch_appends(obj)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 843, in _batch_appends\r\n save(x)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 549, in save\r\n self.save_reduce(obj=obj, *rv)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 638, in save_reduce\r\n save(args)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 504, in save\r\n f(self, obj) # Call unbound method with explicit self\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 774, in save_tuple\r\n save(element)\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 504, in save\r\n f(self, obj) # Call unbound method with explicit self\r\n File \"/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py\", line 732, in save_bytes\r\n self._write_large_bytes(BINBYTES + pack(\"<I\", n), obj)\r\nstruct.error: 'I' format requires 0 <= number <= 4294967295\r\n```\r\n\r\nMy datasets usually have hundreds of thousands to low millions of rows, with each row containing a list of 10 strings and list of vectors of different length (the strings tokenized), which in the worst case have 10\\*512\\*8 = 40960 bytes (but usually it is much smaller, as the vectors tend to be shorter. I need these groups of text lines to create training data for the Inverse Cloze Task.\r\n\r\nAnyway I don't think my particular dataset is relevant, as the tiny script I created also manages to crash.\r\nBut I think the issue is the same as the save_to_disk, from the traceback it seems that in multiprocessing, it tries to use dill to return the result of the map workers, which tries to pickle the data and can't do it, probably because it's again using the older pickle protocol. That's my guess anyway.",
"I just merged a fix #2150 that allows to pickle tables bigger than 4GiB\r\nFeel free to try it on the `master` branch !",
"awesome! I started getting this error as well when I tried to tokenize with a longer sequence length",
"@prokopCerny does this fix work for you? I found that with the latest master, my container with 500GB RAM starts crashing when I try to map a large dataset using `num_proc`.\r\n\r\n@lhoestq would it be possible to implement some logic to keep the individual cache files small (say below 100mb)? I find this helps with loading large datasets, but the \"hack\" I was using (increasing `num_proc` to a large number) doesn't work anymore with the latest master; my container crashes even with `num_proc=200` now",
"Closing since the original issue was fixed in #2150 \r\nFeel free to reopen if you are still experiencing it.\r\nFor the other problems, please open separate issues"
] | 2021-03-29T10:43:15 | 2021-05-03T17:59:21 | 2021-05-03T17:59:21 |
NONE
| null | null | null |
Using Datasets 1.5.0 on Python 3.7.
Recently I've been working on medium to large size datasets (pretokenized raw text sizes from few gigabytes to low tens of gigabytes), and have found out that several preprocessing steps are massively faster when done in memory, and I have the ability to requisition a lot of RAM, so I decided to do these steps completely out of the datasets library.
So my workflow is to do several .map() on datasets object, then for the operation which is faster in memory to extract the necessary columns from the dataset and then drop it whole, do the transformation in memory, and then create a fresh Dataset object using .from_dict() or other method.
When I then try to call save_to_disk(path) on the dataset, it crashes because of pickling, which appears to be because of using old pickle protocol which doesn't support large files (over 4 GiB).
```
Traceback (most recent call last):
File "./tokenize_and_chunkify_in_memory.py", line 80, in <module>
main()
File "./tokenize_and_chunkify_in_memory.py", line 75, in main
tokenize_and_chunkify(config)
File "./tokenize_and_chunkify_in_memory.py", line 60, in tokenize_and_chunkify
contexts_dataset.save_to_disk(chunked_path)
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/datasets/arrow_dataset.py", line 457, in save_to_disk
self = pickle.loads(pickle.dumps(self))
OverflowError: cannot serialize a bytes object larger than 4 GiB
```
From what I've seen this issue may be possibly fixed, as the line `self = pickle.loads(pickle.dumps(self))` does not appear to be present in the current state of the repository.
To save these datasets to disk, I've resorted to calling .map() over them with `function=None` and specifying the .arrow cache file, and then creating a new dataset using the .from_file() method, which I can then safely save to disk.
Additional issue when working with these large in-memory datasets is when using multiprocessing, is again to do with pickling. I've tried to speed up the mapping with function=None by specifying num_proc to the available cpu count, and I again get issues with transferring the dataset, with the following traceback. I am not sure if I should open a separate issue for that.
```
Traceback (most recent call last):
File "./tokenize_and_chunkify_in_memory.py", line 94, in <module>
main()
File "./tokenize_and_chunkify_in_memory.py", line 89, in main
tokenize_and_chunkify(config)
File "./tokenize_and_chunkify_in_memory.py", line 67, in tokenize_and_chunkify
contexts_dataset.map(function=None, cache_file_name=str(output_dir_path / "tmp.arrow"), writer_batch_size=50000, num_proc=config.threads)
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/datasets/arrow_dataset.py", line 1485, in map
transformed_shards = [r.get() for r in results]
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/datasets/arrow_dataset.py", line 1485, in <listcomp>
transformed_shards = [r.get() for r in results]
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/multiprocess/pool.py", line 657, in get
raise self._value
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/multiprocess/pool.py", line 431, in _handle_tasks
put(task)
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/multiprocess/connection.py", line 209, in send
self._send_bytes(_ForkingPickler.dumps(obj))
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/multiprocess/reduction.py", line 54, in dumps
cls(buf, protocol, *args, **kwds).dump(obj)
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/dill/_dill.py", line 454, in dump
StockPickler.dump(self, obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 437, in dump
self.save(obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 789, in save_tuple
save(element)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/dill/_dill.py", line 941, in save_module_dict
StockPickler.save_dict(pickler, obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 859, in save_dict
self._batch_setitems(obj.items())
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 885, in _batch_setitems
save(v)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 549, in save
self.save_reduce(obj=obj, *rv)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 662, in save_reduce
save(state)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/dill/_dill.py", line 941, in save_module_dict
StockPickler.save_dict(pickler, obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 859, in save_dict
self._batch_setitems(obj.items())
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 885, in _batch_setitems
save(v)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 549, in save
self.save_reduce(obj=obj, *rv)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 638, in save_reduce
save(args)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 774, in save_tuple
save(element)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 819, in save_list
self._batch_appends(obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 843, in _batch_appends
save(x)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 549, in save
self.save_reduce(obj=obj, *rv)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 638, in save_reduce
save(args)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 774, in save_tuple
save(element)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 819, in save_list
self._batch_appends(obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 846, in _batch_appends
save(tmp[0])
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 549, in save
self.save_reduce(obj=obj, *rv)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 638, in save_reduce
save(args)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 774, in save_tuple
save(element)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 789, in save_tuple
save(element)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 819, in save_list
self._batch_appends(obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 846, in _batch_appends
save(tmp[0])
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 789, in save_tuple
save(element)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 819, in save_list
self._batch_appends(obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 846, in _batch_appends
save(tmp[0])
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 789, in save_tuple
save(element)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 819, in save_list
self._batch_appends(obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 843, in _batch_appends
save(x)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 549, in save
self.save_reduce(obj=obj, *rv)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 638, in save_reduce
save(args)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 774, in save_tuple
save(element)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 732, in save_bytes
self._write_large_bytes(BINBYTES + pack("<I", n), obj)
struct.error: 'I' format requires 0 <= number <= 4294967295Traceback (most recent call last):
File "./tokenize_and_chunkify_in_memory.py", line 94, in <module>
main()
File "./tokenize_and_chunkify_in_memory.py", line 89, in main
tokenize_and_chunkify(config)
File "./tokenize_and_chunkify_in_memory.py", line 67, in tokenize_and_chunkify
contexts_dataset.map(function=None, cache_file_name=str(output_dir_path / "tmp.arrow"), writer_batch_size=50000, num_proc=config.threads)
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/datasets/arrow_dataset.py", line 1485, in map
transformed_shards = [r.get() for r in results]
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/datasets/arrow_dataset.py", line 1485, in <listcomp>
transformed_shards = [r.get() for r in results]
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/multiprocess/pool.py", line 657, in get
raise self._value
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/multiprocess/pool.py", line 431, in _handle_tasks
put(task)
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/multiprocess/connection.py", line 209, in send
self._send_bytes(_ForkingPickler.dumps(obj))
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/multiprocess/reduction.py", line 54, in dumps
cls(buf, protocol, *args, **kwds).dump(obj)
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/dill/_dill.py", line 454, in dump
StockPickler.dump(self, obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 437, in dump
self.save(obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 789, in save_tuple
save(element)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/dill/_dill.py", line 941, in save_module_dict
StockPickler.save_dict(pickler, obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 859, in save_dict
self._batch_setitems(obj.items())
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 885, in _batch_setitems
save(v)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 549, in save
self.save_reduce(obj=obj, *rv)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 662, in save_reduce
save(state)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/home/cernypro/dev/envs/huggingface_gpu/lib/python3.7/site-packages/dill/_dill.py", line 941, in save_module_dict
StockPickler.save_dict(pickler, obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 859, in save_dict
self._batch_setitems(obj.items())
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 885, in _batch_setitems
save(v)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 549, in save
self.save_reduce(obj=obj, *rv)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 638, in save_reduce
save(args)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 774, in save_tuple
save(element)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 819, in save_list
self._batch_appends(obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 843, in _batch_appends
save(x)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 549, in save
self.save_reduce(obj=obj, *rv)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 638, in save_reduce
save(args)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 774, in save_tuple
save(element)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 819, in save_list
self._batch_appends(obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 846, in _batch_appends
save(tmp[0])
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 549, in save
self.save_reduce(obj=obj, *rv)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 638, in save_reduce
save(args)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 774, in save_tuple
save(element)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 789, in save_tuple
save(element)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 819, in save_list
self._batch_appends(obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 846, in _batch_appends
save(tmp[0])
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 789, in save_tuple
save(element)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 819, in save_list
self._batch_appends(obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 846, in _batch_appends
save(tmp[0])
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 789, in save_tuple
save(element)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 819, in save_list
self._batch_appends(obj)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 843, in _batch_appends
save(x)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 549, in save
self.save_reduce(obj=obj, *rv)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 638, in save_reduce
save(args)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 774, in save_tuple
save(element)
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 504, in save
f(self, obj) # Call unbound method with explicit self
File "/mnt/appl/software/Python/3.7.4-GCCcore-8.3.0/lib/python3.7/pickle.py", line 732, in save_bytes
self._write_large_bytes(BINBYTES + pack("<I", n), obj)
struct.error: 'I' format requires 0 <= number <= 4294967295
```
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MDU6SXNzdWU4NDMxNDk2ODA=
| 2,133 |
bug in mlqa dataset
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[
"If you print those questions, you get readable texts:\r\n```python\r\n>>> questions = [\r\n... \"\\u0645\\u062a\\u0649 \\u0628\\u062f\\u0627\\u062a \\u0627\\u0644\\u0645\\u062c\\u0644\\u0629 \\u0627\\u0644\\u0645\\u062f\\u0631\\u0633\\u064a\\u0629 \\u0641\\u064a \\u0646\\u0648\\u062a\\u0631\\u062f\\u0627\\u0645 \\u0628\\u0627\\u0644\\u0646\\u0634\\u0631?\",\r\n... \"\\u0643\\u0645 \\u0645\\u0631\\u0629 \\u064a\\u062a\\u0645 \\u0646\\u0634\\u0631\\u0647\\u0627 \\u0641\\u064a \\u0646\\u0648\\u062a\\u0631\\u062f\\u0627\\u0645?\",\r\n... \"\\u0645\\u0627 \\u0647\\u064a \\u0627\\u0644\\u0648\\u0631\\u0642\\u0629 \\u0627\\u0644\\u064a\\u0648\\u0645\\u064a\\u0629 \\u0644\\u0644\\u0637\\u0644\\u0627\\u0628 \\u0641\\u064a \\u0646\\u0648\\u062a\\u0631\\u062f\\u0627\\u0645?\",\r\n... \"\\u0643\\u0645 \\u0639\\u062f\\u062f \\u0627\\u0644\\u0627\\u0648\\u0631\\u0627\\u0642 \\u0627\\u0644\\u0627\\u062e\\u0628\\u0627\\u0631\\u064a\\u0629 \\u0644\\u0644\\u0637\\u0644\\u0627\\u0628 \\u0627\\u0644\\u062a\\u064a \\u0648\\u062c\\u062f\\u062a \\u0641\\u064a \\u0646\\u0648\\u062a\\u0631\\u062f\\u0627\\u0645?\",\r\n... \"\\u0641\\u064a \\u0627\\u064a \\u0633\\u0646\\u0629 \\u0628\\u062f\\u0627\\u062a \\u0648\\u0631\\u0642\\u0629 \\u0627\\u0644\\u0637\\u0627\\u0644\\u0628 \\u0627\\u0644\\u062d\\u0633 \\u0627\\u0644\\u0633\\u0644\\u064a\\u0645 \\u0628\\u0627\\u0644\\u0646\\u0634\\u0631 \\u0641\\u064a \\u0646\\u0648\\u062a\\u0631\\u062f\\u0627\\u0645?\"\r\n... ]\r\n>>> print(questions)\r\n['متى بدات المجلة المدرسية في نوتردام بالنشر?', 'كم مرة يتم نشرها في نوتردام?', 'ما هي الورقة اليومية للطلاب في نوتردام?', 'كم عدد الاوراق الاخبارية للطلاب التي وجدت في نوتردام?', 'في اي سنة بدات ورقة الطالب الحس السليم بالنشر في نوتردام?']\r\n```\r\nI don't think we can change this",
"Hi @dorost1234.\r\n\r\nIn Python 3, strings are sequences of Unicode _code points_. Unicode is a specification that maps all characters (and emoji symbols) with its unique representation in terms of code points. That is what you see: Unicode code points (represented by a \\u escaped sequence of 16-bit hex values).\r\n\r\nCharacters are usually represented (on screen and papers) with a graphical element called _glyph_. That is what you would like to see: glyphs. But Python does not care about glyphs: that is the job of the GUI or the terminal; glyphs are what you get with the `print` function (if your terminal is properly configured to display those glyphs).\r\n\r\nYou have more detailed information about Unicode in the Python documentation: https://docs.python.org/3/howto/unicode.html",
"thank you so much for the insightful comments. "
] | 2021-03-29T09:03:09 | 2021-03-30T17:40:57 | 2021-03-30T17:40:57 |
NONE
| null | null | null |
Hi
Looking into MLQA dataset for langauge "ar":
```
"question": [
"\u0645\u062a\u0649 \u0628\u062f\u0627\u062a \u0627\u0644\u0645\u062c\u0644\u0629 \u0627\u0644\u0645\u062f\u0631\u0633\u064a\u0629 \u0641\u064a \u0646\u0648\u062a\u0631\u062f\u0627\u0645 \u0628\u0627\u0644\u0646\u0634\u0631?",
"\u0643\u0645 \u0645\u0631\u0629 \u064a\u062a\u0645 \u0646\u0634\u0631\u0647\u0627 \u0641\u064a \u0646\u0648\u062a\u0631\u062f\u0627\u0645?",
"\u0645\u0627 \u0647\u064a \u0627\u0644\u0648\u0631\u0642\u0629 \u0627\u0644\u064a\u0648\u0645\u064a\u0629 \u0644\u0644\u0637\u0644\u0627\u0628 \u0641\u064a \u0646\u0648\u062a\u0631\u062f\u0627\u0645?",
"\u0643\u0645 \u0639\u062f\u062f \u0627\u0644\u0627\u0648\u0631\u0627\u0642 \u0627\u0644\u0627\u062e\u0628\u0627\u0631\u064a\u0629 \u0644\u0644\u0637\u0644\u0627\u0628 \u0627\u0644\u062a\u064a \u0648\u062c\u062f\u062a \u0641\u064a \u0646\u0648\u062a\u0631\u062f\u0627\u0645?",
"\u0641\u064a \u0627\u064a \u0633\u0646\u0629 \u0628\u062f\u0627\u062a \u0648\u0631\u0642\u0629 \u0627\u0644\u0637\u0627\u0644\u0628 \u0627\u0644\u062d\u0633 \u0627\u0644\u0633\u0644\u064a\u0645 \u0628\u0627\u0644\u0646\u0634\u0631 \u0641\u064a \u0646\u0648\u062a\u0631\u062f\u0627\u0645?"
]
```
the questions are in the wrong format, and not readable, could you please have a look? thanks @lhoestq
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TydiQA dataset is mixed and is not split per language
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[
"You can filter the languages this way:\r\n```python\r\ntydiqa_en = tydiqa_dataset.filter(lambda x: x[\"language\"] == \"english\")\r\n```\r\n\r\nOtherwise maybe we can have one configuration per language ?\r\nWhat do you think of this for example ?\r\n\r\n```python\r\nload_dataset(\"tydiqa\", \"primary_task.en\")\r\n```",
"Hi\nthank you very much for the great response, this will be really wonderful\nto have one configuration per language, as one need the dataset in majority\nof case per language for cross-lingual evaluations.\nThis becomes also then more close to TFDS format, which is separated per\nlanguage https://www.tensorflow.org/datasets/catalog/tydi_qa which will be\nreally awesome to have.\nthanks\n\nOn Mon, Mar 29, 2021 at 6:17 PM Quentin Lhoest ***@***.***>\nwrote:\n\n> You can filter the languages this way:\n>\n> tydiqa_en = tydiqa_dataset.filter(lambda x: x[\"language\"] == \"english\")\n>\n> Otherwise maybe we can have one configuration per language ?\n> What do you think of this for example ?\n>\n> load_dataset(\"tydiqa\", \"primary_task.en\")\n>\n> —\n> You are receiving this because you authored the thread.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/huggingface/datasets/issues/2132#issuecomment-809516799>,\n> or unsubscribe\n> <https://github.com/notifications/unsubscribe-auth/AS37NMXPW2PWSQ2RHG73O7TTGCY4LANCNFSM4Z7ER7IA>\n> .\n>\n",
"@lhoestq I greatly appreciate any updates on this. thanks a lot"
] | 2021-03-29T08:56:21 | 2021-04-04T09:57:15 | null |
NONE
| null | null | null |
Hi @lhoestq
Currently TydiQA is mixed and user can only access the whole training set of all languages:
https://www.tensorflow.org/datasets/catalog/tydi_qa
for using this dataset, one need to train/evaluate in each separate language, and having them mixed, makes it hard to use this dataset. This is much convenient for user to have them split and I appreciate your help on this.
Meanwhile, till hopefully this is split per language, I greatly appreciate telling me how I can preprocess and get data per language. thanks a lot
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When training with Multi-Node Multi-GPU the worker 2 has TypeError: 'NoneType' object
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[
"Hi ! Thanks for reporting\r\nI was able to reproduce this issue. This was caused by missing split infos if a worker reloads the cache of the other worker.\r\n\r\nI just opened https://github.com/huggingface/datasets/pull/2137 to fix this issue",
"The PR got merged :)\r\nFeel free to try it out on the `master` branch",
"Sorry for the late reply. \r\nNow everything just works well XD"
] | 2021-03-29T08:45:58 | 2021-04-10T11:08:55 | 2021-04-10T11:08:55 |
NONE
| null | null | null |
version: 1.5.0
met a very strange error, I am training large scale language model, and need train on 2 machines(workers).
And sometimes I will get this error `TypeError: 'NoneType' object is not iterable`
This is traceback
```
71 | | Traceback (most recent call last):
-- | -- | --
72 | | File "run_gpt.py", line 316, in <module>
73 | | main()
74 | | File "run_gpt.py", line 222, in main
75 | | delimiter="\t", column_names=["input_ids", "attention_mask", "chinese_ref"])
76 | | File "/data/miniconda3/lib/python3.7/site-packages/datasets/load.py", line 747, in load_dataset
77 | | use_auth_token=use_auth_token,
78 | | File "/data/miniconda3/lib/python3.7/site-packages/datasets/builder.py", line 513, in download_and_prepare
79 | | self.download_post_processing_resources(dl_manager)
80 | | File "/data/miniconda3/lib/python3.7/site-packages/datasets/builder.py", line 673, in download_post_processing_resources
81 | | for split in self.info.splits:
82 | | TypeError: 'NoneType' object is not iterable
83 | | WARNING:datasets.builder:Reusing dataset csv (/usr/local/app/.cache/huggingface/datasets/csv/default-1c257ebd48e225e7/0.0.0/2960f95a26e85d40ca41a230ac88787f715ee3003edaacb8b1f0891e9f04dda2)
84 | | Traceback (most recent call last):
85 | | File "/data/miniconda3/lib/python3.7/runpy.py", line 193, in _run_module_as_main
86 | | "__main__", mod_spec)
87 | | File "/data/miniconda3/lib/python3.7/runpy.py", line 85, in _run_code
88 | | exec(code, run_globals)
89 | | File "/data/miniconda3/lib/python3.7/site-packages/torch/distributed/launch.py", line 340, in <module>
90 | | main()
91 | | File "/data/miniconda3/lib/python3.7/site-packages/torch/distributed/launch.py", line 326, in main
92 | | sigkill_handler(signal.SIGTERM, None) # not coming back
93 | | File "/data/miniconda3/lib/python3.7/site-packages/torch/distributed/launch.py", line 301, in sigkill_handler
94 | | raise subprocess.CalledProcessError(returncode=last_return_code, cmd=cmd)
```
On worker 1 it loads the dataset well, however on worker 2 will get this error.
And I will meet this error from time to time, sometimes it just goes well.
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wikiann dataset is missing columns
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[
"Here please find TFDS format of this dataset: https://www.tensorflow.org/datasets/catalog/wikiann\r\nwhere there is a span column, this is really necessary to be able to use the data, and I appreciate your help @lhoestq ",
"Hi !\r\nApparently you can get the spans from the NER tags using `tags_to_spans` defined here:\r\n\r\nhttps://github.com/tensorflow/datasets/blob/c7096bd38e86ed240b8b2c11ecab9893715a7d55/tensorflow_datasets/text/wikiann/wikiann.py#L81-L126\r\n\r\nIt would be nice to include the `spans` field in this dataset as in TFDS. This could be a good first issue for new contributors !\r\n\r\nThe objective is to use `tags_to_spans` in the `_generate_examples` method [here](https://github.com/huggingface/nlp/blob/c98e4b8f23e3770c401c6d9326e243e1ffd599ec/datasets/wikiann/wikiann.py#L292-L316) to create he `spans` for each example.",
"Hi @lhoestq \r\nthank you very much for the help, it would be very nice to have it included, here is the full code, one need to also convert tags to string first:\r\n\r\n```\r\nimport datasets \r\nfrom datasets import load_dataset\r\n\r\ndef tags_to_spans(tags):\r\n \"\"\"Convert tags to spans.\"\"\"\r\n spans = set()\r\n span_start = 0\r\n span_end = 0\r\n active_conll_tag = None\r\n for index, string_tag in enumerate(tags):\r\n # Actual BIO tag.\r\n bio_tag = string_tag[0]\r\n assert bio_tag in [\"B\", \"I\", \"O\"], \"Invalid Tag\"\r\n conll_tag = string_tag[2:]\r\n if bio_tag == \"O\":\r\n # The span has ended.\r\n if active_conll_tag:\r\n spans.add((active_conll_tag, (span_start, span_end)))\r\n active_conll_tag = None\r\n # We don't care about tags we are\r\n # told to ignore, so we do nothing.\r\n continue\r\n elif bio_tag == \"B\":\r\n # We are entering a new span; reset indices and active tag to new span.\r\n if active_conll_tag:\r\n spans.add((active_conll_tag, (span_start, span_end)))\r\n active_conll_tag = conll_tag\r\n span_start = index\r\n span_end = index\r\n elif bio_tag == \"I\" and conll_tag == active_conll_tag:\r\n # We're inside a span.\r\n span_end += 1\r\n else:\r\n # This is the case the bio label is an \"I\", but either:\r\n # 1) the span hasn't started - i.e. an ill formed span.\r\n # 2) We have IOB1 tagging scheme.\r\n # We'll process the previous span if it exists, but also include this\r\n # span. This is important, because otherwise, a model may get a perfect\r\n # F1 score whilst still including false positive ill-formed spans.\r\n if active_conll_tag:\r\n spans.add((active_conll_tag, (span_start, span_end)))\r\n active_conll_tag = conll_tag\r\n span_start = index\r\n span_end = index\r\n # Last token might have been a part of a valid span.\r\n if active_conll_tag:\r\n spans.add((active_conll_tag, (span_start, span_end)))\r\n # Return sorted list of spans\r\n return sorted(list(spans), key=lambda x: x[1][0])\r\n\r\ndataset = load_dataset('wikiann', 'en', split=\"train\")\r\nner_tags = {\r\n 0:\"O\",\r\n 1:\"B-PER\",\r\n 2:\"I-PER\",\r\n 3:\"B-ORG\",\r\n 4:\"I-ORG\",\r\n 5:\"B-LOC\",\r\n 6:\"I-LOC\"\r\n}\r\n\r\ndef get_spans(tokens, tags):\r\n \"\"\"Convert tags to textspans.\"\"\"\r\n spans = tags_to_spans(tags)\r\n text_spans = [\r\n x[0] + \": \" + \" \".join([tokens[i]\r\n for i in range(x[1][0], x[1][1] + 1)])\r\n for x in spans\r\n ]\r\n if not text_spans:\r\n text_spans = [\"None\"]\r\n return text_spans\r\n\r\n\r\nfor i, d in enumerate(dataset):\r\n tokens = d['tokens']\r\n tags = d['ner_tags']\r\n tags = [ner_tags[i] for i in tags]\r\n spans = get_spans(tokens, tags)\r\n print(\"spans \", spans)\r\n print(d)\r\n if i > 10:\r\n break; \r\n```\r\nI am not sure how to contribute to the repository and how things work, could you let me know how one can access the datasets to be able to contribute to the repository? Maybe I could do it then\r\nthanks \r\n",
"Cool ! Let me give you some context:\r\n\r\n#### Contribution guide\r\n\r\nYou can find the contribution guide here:\r\n\r\nhttps://github.com/huggingface/datasets/blob/master/CONTRIBUTING.md\r\n\r\nIt explains how to set up your dev environment in a few steps.\r\n\r\n#### Dataset loading\r\n\r\nEach Dataset is defined by a Table that have many rows (one row = one example) and columns (one column = one feature).\r\nTo change how a dataset is constructed, you have to modify its dataset script that you can find here:\r\n\r\nhttps://github.com/huggingface/datasets/blob/master/datasets/wikiann/wikiann.py\r\n\r\nIt includes everything needed to load the WikiANN dataset.\r\nYou can load locally a modified version of `wikiann.py` with `load_dataset(\"path/to/wikiann.py\")`.\r\n\r\n#### Define a new column\r\n\r\nEach column has a name and a type. You can see how the features of WikiANN are defined here:\r\n\r\nhttps://github.com/huggingface/datasets/blob/c98e4b8f23e3770c401c6d9326e243e1ffd599ec/datasets/wikiann/wikiann.py#L245-L263\r\n\r\nIdeally we would have one additional feature \"spans\":\r\n```python\r\n \"spans\": datasets.Sequence(datasets.Value(\"string\")),\r\n```\r\n\r\n#### Compute the content of each row\r\n\r\nTo build the WikiANN rows, the _generate_examples method from [here](https://github.com/huggingface/nlp/blob/c98e4b8f23e3770c401c6d9326e243e1ffd599ec/datasets/wikiann/wikiann.py#L292-L316) is used. This function `yield` one python dictionary for each example:\r\n```python\r\nyield guid_index, {\"tokens\": tokens, \"ner_tags\": ner_tags, \"langs\": langs}\r\n```\r\n\r\nThe objective would be to return instead something like\r\n```python\r\nspans = spans = get_spans(tokens, tags)\r\nyield guid_index, {\"tokens\": tokens, \"ner_tags\": ner_tags, \"langs\": langs, \"spans\": spans}\r\n```\r\n\r\nLet me know if you have questions !",
"The PR was merged. Issue should be closed.\r\n\r\nCC: @lhoestq "
] | 2021-03-29T08:23:00 | 2021-08-27T14:44:18 | 2021-08-27T14:44:18 |
NONE
| null | null | null |
Hi
Wikiann dataset needs to have "spans" columns, which is necessary to be able to use this dataset, but this column is missing from huggingface datasets, could you please have a look? thank you @lhoestq
|
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| 2,129 |
How to train BERT model with next sentence prediction?
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[
"Hi !\r\nWe're not using `TextDatasetForNextSentencePrediction` in `datasets`.\r\nAlthough you can probably use the `TextDatasetForNextSentencePrediction.create_examples_from_document` on a dataset to prepare it for next sentence prediction.",
"Thanks.\r\n\r\nDo you mean that `TextDatasetForNextSentencePrediction.create_exapmles_from_document` can be applied to dataset object other than `TextDatasetForNextSentencePrediction` e.g. a `Dataset` object which is loaded by `datasets.load_dataset`?",
"It would probably require a bit of tweaking, but you can apply it to a dataset, yes.\r\nThis should give you a new dataset with sentence pairs you can train a model on.\r\n\r\nYou can find the documentation about dataset processing here:\r\nhttps://huggingface.co/docs/datasets/processing.html#processing-data-with-map",
"Thank you for detail information.\r\n\r\nI'll try to apply `create_examples_from_document` to `Dataset` object.\r\n"
] | 2021-03-29T06:48:03 | 2021-04-01T04:58:40 | 2021-04-01T04:58:40 |
NONE
| null | null | null |
Hello.
I'm trying to pretrain the BERT model with next sentence prediction. Is there any function that supports next sentence prediction
like ` TextDatasetForNextSentencePrediction` of `huggingface/transformers` ?
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| 2,128 |
Dialogue action slot name and value are reversed in MultiWoZ 2.2
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"Hi\r\nGood catch ! Thanks for reporting\r\n\r\nIf you are interested in contributing, feel free to open a PR to fix this :) "
] | 2021-03-29T06:34:02 | 2021-03-31T12:48:01 | 2021-03-31T12:48:01 |
CONTRIBUTOR
| null | null | null |
Hi @yjernite, thank you for adding MultiWoZ 2.2 in the huggingface datasets platform. It is beneficial!
I spot an error that the order of Dialogue action slot names and values are reversed.
https://github.com/huggingface/datasets/blob/649b2c469779bc4221e1b6969aa2496d63eb5953/datasets/multi_woz_v22/multi_woz_v22.py#L251-L262
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Is dataset timit_asr broken?
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[
"Hi,\r\n\r\nthanks for the report, but this is a duplicate of #2052. ",
"@mariosasko \r\nThank you for your quick response! Following #2052, I've fixed the problem."
] | 2021-03-28T08:30:18 | 2021-03-28T12:29:25 | 2021-03-28T12:29:25 |
NONE
| null | null | null |
Using `timit_asr` dataset, I saw all records are the same.
``` python
from datasets import load_dataset, load_metric
timit = load_dataset("timit_asr")
from datasets import ClassLabel
import random
import pandas as pd
from IPython.display import display, HTML
def show_random_elements(dataset, num_examples=10):
assert num_examples <= len(dataset), "Can't pick more elements than there are in the dataset."
picks = []
for _ in range(num_examples):
pick = random.randint(0, len(dataset)-1)
while pick in picks:
pick = random.randint(0, len(dataset)-1)
picks.append(pick)
df = pd.DataFrame(dataset[picks])
display(HTML(df.to_html()))
show_random_elements(timit['train'].remove_columns(["file", "phonetic_detail", "word_detail", "dialect_region", "id",
"sentence_type", "speaker_id"]), num_examples=20)
```
`output`
<img width="312" alt="Screen Shot 2021-03-28 at 17 29 04" src="https://user-images.githubusercontent.com/42398050/112746646-21acee80-8feb-11eb-84f3-dbb5d4269724.png">
I double-checked it [here](https://huggingface.co/datasets/viewer/), and met the same problem.
<img width="1374" alt="Screen Shot 2021-03-28 at 17 32 07" src="https://user-images.githubusercontent.com/42398050/112746698-9bdd7300-8feb-11eb-97ed-5babead385f4.png">
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Adding ScaNN library to do MIPS?
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[
"I haven't played with it (yet) but it sounds really cool !\r\n"
] | 2021-03-28T00:07:00 | 2021-03-29T13:23:43 | null |
NONE
| null | null | null |
@lhoestq Hi I am thinking of adding this new google library to do the MIPS similar to **add_faiss_idex**. As the paper suggests, it is really fast when it comes to retrieving the nearest neighbors.
https://github.com/google-research/google-research/tree/master/scann
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Problem downloading GEM wiki_auto_asset_turk dataset
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[
"Hi,\r\n\r\nsadly I can't replicate the problem on my Windows machine. Try to update the library to the newest version with:\r\n```bash\r\npip install git+https://github.com/huggingface/datasets\r\n``` ",
"Thanks for the answer! I updated the library but unfortunately it didn't solve the problem.",
"Is there an error message ?\r\nWhat stacktrace do you get if you interrupt the execution of the program while downloading ?",
"Sorry for the long time since my last comment, I tried again and don't seem to have the problem anymore, thanks for your support!",
"Great ! I'm closing the issue then. Feel free to re-open if you experience this issue again"
] | 2021-03-27T18:41:28 | 2021-05-12T16:15:18 | 2021-05-12T16:15:17 |
NONE
| null | null | null |
@yjernite
### Summary
I am currently working on the GEM datasets and do not manage to download the wiki_auto_asset_turk data, whereas all other datasets download well with the same code.
### Steps to reproduce
Code snippet:
from datasets import load_dataset
#dataset = load_dataset('gem', 'web_nlg_en')
dataset = load_dataset('gem', 'wiki_auto_asset_turk')
```
**Expected behavior:**
I expect the dataset to start downloading (download bar appears and progresses toward 100%)
**Actual behavior:**
Instead of seeing the download bar appearing, nothing happens; the following appears in the console as expected, but nothing more:
Downloading: 36.6kB [00:00, 37.2MB/s]
Downloading: 41.7kB [00:00, ?B/s]
Downloading and preparing dataset gem/wiki_auto_asset_turk (download: 121.37 MiB, generated: 145.69 MiB, post-processed: Unknown size, total: 267.07 MiB) to C:\Users\sfmil\.cache\huggingface\datasets\gem\wiki_auto_asset_turk\1.0.0\f252756d7f1b8f019aac71a1623b2950acfe10d25d956668ac4eae4e93c58b8d...
### Is this a regression?
No, it was the first time I was trying to download this dataset (same for the other ones).
### Debug info
- Python version: Python 3.8.2
- OS version: Windows 10 Family
|
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MDU6SXNzdWU4NDE5NTQ1MjE=
| 2,120 |
dataset viewer does not work anymore
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[
"Thanks for reporting :) We're looking into it",
"Back up. "
] | 2021-03-26T13:22:13 | 2021-03-26T15:52:22 | 2021-03-26T15:52:22 |
NONE
| null | null | null |
Hi
I normally use this link to see all datasets and how I can load them
https://huggingface.co/datasets/viewer/
Now I am getting
502 Bad Gateway
nginx/1.18.0 (Ubuntu)
could you bring this webpage back ? this was very helpful @lhoestq
thanks for your help
|
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| 2,117 |
load_metric from local "glue.py" meet error 'NoneType' object is not callable
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[
"@Frankie123421 what was the resolution to this?",
"> @Frankie123421 what was the resolution to this?\r\n\r\nuse glue_metric.py instead of glue.py in load_metric",
"thank you!"
] | 2021-03-26T02:35:22 | 2021-08-25T21:44:05 | 2021-03-26T02:40:26 |
NONE
| null | null | null |
actual_task = "mnli" if task == "mnli-mm" else task
dataset = load_dataset(path='/home/glue.py', name=actual_task)
metric = load_metric(path='/home/glue.py', name=actual_task)
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
<ipython-input-8-7ab77a465d81> in <module>
1 actual_task = "mnli" if task == "mnli-mm" else task
2 dataset = load_dataset(path='/home/jcli/glue.py', name=actual_task)
----> 3 metric = load_metric(path='/home/jcli/glue.py', name=actual_task)
~/anaconda3/envs/pytorch/lib/python3.6/site-packages/datasets/load.py in load_metric(path, config_name, process_id, num_process, cache_dir, experiment_id, keep_in_memory, download_config, download_mode, script_version, **metric_init_kwargs)
508 keep_in_memory=keep_in_memory,
509 experiment_id=experiment_id,
--> 510 **metric_init_kwargs,
511 )
512
TypeError: 'NoneType' object is not callable
Please help
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| 2,116 |
Creating custom dataset results in error while calling the map() function
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[
"Hi,\r\n\r\nthe `_data` attribute is missing due to `MyDataset.__init__` not calling the parent `__init__`. However, I don't think it's a good idea to subclass the `datasets.Dataset` class (e.g. it's kind of dangerous to override `datasets.Dataset.__getitem__`). Instead, it's better to follow the \"association over inheritance\" approach with a simple wrapper class that delegates calls to a wrapped `Dataset` (map, etc.). Btw, the library offers the `datasets.Dataset.from_pandas` class method to directly create a `datasets.Dataset` from the dataframe."
] | 2021-03-26T00:37:46 | 2021-03-31T14:30:32 | 2021-03-31T14:30:32 |
NONE
| null | null | null |
calling `map()` of `datasets` library results into an error while defining a Custom dataset.
Reproducible example:
```
import datasets
class MyDataset(datasets.Dataset):
def __init__(self, sentences):
"Initialization"
self.samples = sentences
def __len__(self):
"Denotes the total number of samples"
return len(self.samples)
def __getitem__(self, index):
"Generates one sample of data"
# Select sample
# Load data and get label
samples = self.samples[index]
return samples
def preprocess_function_train(examples):
inputs = examples
labels = [example+tokenizer.eos_token for example in examples ]
inputs = tokenizer(inputs, max_length=30, padding=True, truncation=True)
labels = tokenizer(labels, max_length=30, padding=True, truncation=True)
model_inputs = inputs
model_inputs["labels"] = labels["input_ids"]
print("about to return")
return model_inputs
##train["sentence"] is dataframe column
train_dataset = MyDataset(train['sentence'].values.tolist())
train_dataset = train_dataset.map(
preprocess_function,
batched = True,
batch_size=32
)
```
Stack trace of error:
```
Traceback (most recent call last):
File "dir/train_generate.py", line 362, in <module>
main()
File "dir/train_generate.py", line 245, in main
train_dataset = train_dataset.map(
File "anaconda_dir/anaconda3/envs/env1/lib/python3.8/site-packages/datasets/arrow_dataset.py", line 1244, in map
return self._map_single(
File "anaconda_dir/anaconda3/envs/env1/lib/python3.8/site-packages/datasets/arrow_dataset.py", line 149, in wrapper
unformatted_columns = set(self.column_names) - set(self._format_columns or [])
File "anaconda_dir/anaconda3/envs/env1/lib/python3.8/site-packages/datasets/arrow_dataset.py", line 526, in column_names
return self._data.column_names
AttributeError: 'MyDataset' object has no attribute '_data'
```
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The datasets.map() implementation modifies the datatype of os.environ object
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[] | 2021-03-25T20:29:19 | 2021-03-26T15:13:52 | 2021-03-26T15:13:52 |
NONE
| null | null | null |
In our testing, we noticed that the datasets.map() implementation is modifying the datatype of python os.environ object from '_Environ' to 'dict'.
This causes following function calls to fail as follows:
`
x = os.environ.get("TEST_ENV_VARIABLE_AFTER_dataset_map", default=None)
TypeError: get() takes no keyword arguments
`
It looks like the following line in datasets.map implementation introduced this functionality.
https://github.com/huggingface/datasets/blob/0cb1ac06acb0df44a1cf4128d03a01865faa2504/src/datasets/arrow_dataset.py#L1421
Here is the test script to reproduce this error.
```
from datasets import load_dataset
from transformers import AutoTokenizer
import os
def test_train():
model_checkpoint = "distilgpt2"
datasets = load_dataset('wikitext', 'wikitext-2-raw-v1')
tokenizer = AutoTokenizer.from_pretrained(model_checkpoint, use_fast=True)
tokenizer.pad_token = tokenizer.eos_token
def tokenize_function(examples):
y = tokenizer(examples['text'], truncation=True, max_length=64)
return y
x = os.environ.get("TEST_ENV_VARIABLE_BEFORE_dataset_map", default=None)
print(f"Testing environment variable: TEST_ENV_VARIABLE_BEFORE_dataset_map {x}")
print(f"Data type of os.environ before datasets.map = {os.environ.__class__.__name__}")
datasets.map(tokenize_function, batched=True, num_proc=2, remove_columns=["text"])
print(f"Data type of os.environ after datasets.map = {os.environ.__class__.__name__}")
x = os.environ.get("TEST_ENV_VARIABLE_AFTER_dataset_map", default=None)
print(f"Testing environment variable: TEST_ENV_VARIABLE_AFTER_dataset_map {x}")
if __name__ == "__main__":
test_train()
```
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| 2,108 |
Is there a way to use a GPU only when training an Index in the process of add_faisis_index?
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[] | 2021-03-24T21:32:16 | 2021-03-25T06:31:43 | null |
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| null | null | null |
Motivation - Some FAISS indexes like IVF consist of the training step that clusters the dataset into a given number of indexes. It would be nice if we can use a GPU to do the training step and covert the index back to CPU as mention in [this faiss example](https://gist.github.com/mdouze/46d6bbbaabca0b9778fca37ed2bcccf6).
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WMT19 Dataset for Kazakh-English is not formatted correctly
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[
"Hi ! Thanks for reporting\r\n\r\nBy looking at the raw `news-commentary-v14.en-kk.tsv` file, it looks like there are at least 17 lines with this issue.\r\nMoreover these issues are not always the same:\r\n- L97 is only `kk` text and must be appended at the end of the `kk` text of the **next** line\r\n- L2897 is only `kk` text and must be appended at the end of the `kk` text of the **previous** line\r\n- L1247 and L1248 are only `kk` texts and must be inserted at the **beginning** of the `kk` text of the next line\r\n- (and there are many others)\r\n\r\nIt would be nice to have a corrected version of this file ! The file is available in the `wmt/news-commentary` repository on the Datasets Hub here:\r\nhttps://huggingface.co/datasets/wmt/news-commentary/tree/main/v14/training\r\n\r\nThen maybe we can notify the WMT authors and host the corrected version somewhere"
] | 2021-03-23T20:14:47 | 2021-03-25T21:36:20 | null |
NONE
| null | null | null |
In addition to the bug of languages being switched from Issue @415, there are incorrect translations in the dataset because the English-Kazakh translations have a one off formatting error.
The News Commentary v14 parallel data set for kk-en from http://www.statmt.org/wmt19/translation-task.html has a bug here:
> Line 94. The Swiss National Bank, for its part, has been battling with the deflationary effects of the franc’s dramatic appreciation over the past few years. Швейцарияның Ұлттық банкі өз тарапынан, соңғы бірнеше жыл ішінде франк құнының қатты өсуінің дефляциялық әсерімен күресіп келеді.
>
> Line 95. Дефляциялық күштер 2008 жылы терең және ұзаққа созылған жаһандық дағдарысқа байланысты орын алған ірі экономикалық және қаржылық орын алмасулардың арқасында босатылды. Жеке қарыз қаражаты үлесінің қысқаруы орталық банктің рефляцияға жұмсалған күш-жігеріне тұрақты соққан қарсы желдей болды.
>
> Line 96. The deflationary forces were unleashed by the major economic and financial dislocations associated with the deep and protracted global crisis that erupted in 2008. Private deleveraging became a steady headwind to central bank efforts to reflate. 2009 жылы, алдыңғы қатарлы экономикалардың шамамен үштен бірі бағаның төмендеуін көрсетті, бұл соғыстан кейінгі жоғары деңгей болды.
As you can see, line 95 has only the Kazakh translation which should be part of line 96. This causes all of the following English-Kazakh translation pairs to be one off rendering ALL of those translations incorrect. This issue was not fixed when the dataset was imported to Huggingface. By running this code
```
import datasets
from datasets import load_dataset
dataset = load_dataset('wmt19', 'kk-en')
for key in dataset['train']['translation']:
if 'The deflationary forces were unleashed by the major economic and financial dislocations associated with the deep and protracted global crisis that erupted in 2008.' in key['kk']:
print(key['en'])
print(key['kk'])
break
```
we get:
> 2009 жылы, алдыңғы қатарлы экономикалардың шамамен үштен бірі бағаның төмендеуін көрсетті, бұл соғыстан кейінгі жоғары деңгей болды.
> The deflationary forces were unleashed by the major economic and financial dislocations associated with the deep and protracted global crisis that erupted in 2008. Private deleveraging became a steady headwind to central bank efforts to reflate.
which shows that the issue still persists in the Huggingface dataset. The Kazakh sentence matches up to the next English sentence in the dataset instead of the current one.
Please let me know if there's you have any ideas to fix this one-off error from the dataset or if this can be fixed by Huggingface.
|
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Request to remove S2ORC dataset
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[
"Hello @kyleclo! Currently, we are getting the data from your bucket, so if you remove it the HF script won't work anymore :) \r\n\r\nUntil you solve things on your end, @lhoestq suggested we just return a warning message when people try to load that dataset from HF. What would you like it to say?",
"Hi @kyleclo, as of today, you have not removed your bucket data yet, and therefore HuggingFace can download it from there.\r\n\r\nIs it OK? Are you planning to eventually delete it? Thank you.",
"Hi! Sorry I missed @yjernite 's previous message, thanks for responding! \r\n\r\nIs there an option where we can keep our data in our bucket, but the HF script no longer pulls data from it? "
] | 2021-03-23T19:43:06 | 2021-08-04T19:18:02 | null |
NONE
| null | null | null |
Hi! I was wondering if it's possible to remove [S2ORC](https://huggingface.co/datasets/s2orc) from hosting on Huggingface's platform? Unfortunately, there are some legal considerations about how we make this data available. Happy to add back to Huggingface's platform once we work out those hurdles! Thanks!
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Trouble loading wiki_movies
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[
"Hi ! `wiki_movies` was added in `datasets==1.2.0`. However it looks like you have `datasets==1.1.2`.\r\n\r\nTo use `wiki_movies`, please update `datasets` with\r\n```\r\npip install --upgrade datasets\r\n```",
"Thanks a lot! That solved it and I was able to upload a model trained on it as well :)"
] | 2021-03-23T18:59:54 | 2022-03-30T08:22:58 | 2022-03-30T08:22:58 |
NONE
| null | null | null |
Hello,
I am trying to load_dataset("wiki_movies") and it gives me this error -
`FileNotFoundError: Couldn't find file locally at wiki_movies/wiki_movies.py, or remotely at https://raw.githubusercontent.com/huggingface/datasets/1.1.2/datasets/wiki_movies/wiki_movies.py or https://s3.amazonaws.com/datasets.huggingface.co/datasets/datasets/wiki_movies/wiki_movies.py`
Trying to do `python run_mlm.py \
--model_name_or_path roberta-base \
--dataset_name wiki_movies \` also gives the same error.
Is this something on my end? From what I can tell, this dataset was re-added by @lhoestq a few months ago.
Thank you!
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citation, homepage, and license fields of `dataset_info.json` are duplicated many times
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[
"Thanks for reporting :)\r\nMaybe we can concatenate fields only if they are different.\r\n\r\nCurrently this is done here:\r\n\r\nhttps://github.com/huggingface/nlp/blob/349ac4398a3bcae6356f14c5754483383a60e8a4/src/datasets/info.py#L180-L196\r\n\r\nThis can be a good first contribution to the library.\r\nPlease comment if you'd like to improve this and open a PR :)"
] | 2021-03-23T17:18:09 | 2021-04-06T14:39:59 | 2021-04-06T14:39:59 |
NONE
| null | null | null |
This happens after a `map` operation when `num_proc` is set to `>1`. I tested this by cleaning up the json before running the `map` op on the dataset so it's unlikely it's coming from an earlier concatenation.
Example result:
```
"citation": "@ONLINE {wikidump,\n author = {Wikimedia Foundation},\n title = {Wikimedia Downloads},\n url = {https://dumps.wikimedia.org}\n}\n\n@ONLINE {wikidump,\n author = {Wikimedia Foundation},\n title = {Wikimedia Downloads},\n url = {https://dumps.wikimedia.org}\n}\n\n@ONLINE {wikidump,\n author = {Wikimedia Foundation},\n title = {Wikimedia Downloads},\n url = {https://dumps.wikimedia.org}\n}\n\n@ONLINE {wikidump,\n author = {Wikimedia Foundation},\n title = {Wikimedia Downloads},\n url = {https://dumps.wikimedia.org}\n}\n\n@ONLINE {wikidump,\n author = {Wikimedia Foundation},\n title = {Wikimedia Downloads},\n url = {https://dumps.wikimedia.org}\n}\n\n@ONLINE {wikidump,\n author = {Wikimedia Foundation},\n title = {Wikimedia Downloads},\n url = {https://dumps.wikimedia.org}\n}\n\n@ONLINE {wikidump,\n author = {Wikimedia Foundation},\n title = {Wikimedia Downloads},\n url = {https://dumps.wikimedia.org}\n}\n\n@ONLINE {wikidump,\n author = {Wikimedia Foundation},\n title = {Wikimedia Downloads},\n url = {https://dumps.wikimedia.org}\n}\n\n@ONLINE {wikidump,\n author = {Wikimedia Foundation},\n title = {Wikimedia Downloads},\n url = {https://dumps.wikimedia.org}\n}\n\n@ONLINE {wikidump,\n author = {Wikimedia Foundation},\n title = {Wikimedia Downloads},\n url = {https://dumps.wikimedia.org}\n}\n\n@ONLINE {wikidump,\n author = {Wikimedia Foundation},\n title = {Wikimedia Downloads},\n url = {https://dumps.wikimedia.org}\n}\n\n@ONLINE {wikidump,\n author = {Wikimedia Foundation},\n title = {Wikimedia Downloads},\n
```
@lhoestq and I believe this is happening due to the fields being concatenated `num_proc` times.
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load_from_disk takes a long time to load local dataset
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[
"Hi !\r\nCan you share more information about the features of your dataset ? You can get them by printing `my_dataset.features`\r\nCan you also share the code of your `map` function ?",
"It is actually just the tokenized `wikipedia` dataset with `input_ids`, `attention_mask`, etc, with one extra column which is a list of integers. The `text` column is removed during tokenization.\r\n\r\n```\r\ndef add_len_and_seq(example):\r\n end_idx = example['input_ids'].index(SEP)\r\n example['actual_len'] = end_idx-1\r\n seq_len = len(example['input_ids'])\r\n \r\n\r\n example['seq'] = [PAD_ID] + [np.uint8(example['some_integer'])]*(end_idx-1) + [PAD_ID]*(seq_len-end_idx)\r\n \r\n return example\r\n```\r\n",
"Is `PAD_ID` a python integer ? You need all the integers in `example['seq']` to have the same type.\r\nDoes this work if you remove the `np.uint8` and use python integers instead ?",
"yup I casted it to `np.uint8` outside the function where it was defined. It was originally using python integers.",
"Strangely, even when I manually created `np.arrays` of specific `dtypes`, the types in the final `dataset_info.json` that gets written are still `int64`.\r\n\r\nUpdate: I tried creating lists of `int8`s and got the same result.",
"Yes this is a known issue: #625 \r\nWe're working on making the precision kept for numpy :)\r\nTo specify the precision of the integers, currently one needs to specify the output features with `.map(..., features=output_features)`",
"Do you know what step is taking forever in the code ?\r\nWhat happens if you interrupt the execution of the dataset loading ?",
"After a synchronous discussion, we found that the cache file sizes have an enormous effect on the loading speed: smaller cache files result in faster load times. `num_proc` controls the number of cache files that are being written and is inversely proportional to the individual file size. In other words, increase `num_proc` for smaller cache files :)\r\n\r\nMaybe this can be highlighted somewhere in the docs."
] | 2021-03-23T09:28:37 | 2021-03-23T17:12:16 | 2021-03-23T17:12:16 |
NONE
| null | null | null |
I have an extremely large tokenized dataset (24M examples) that loads in a few minutes. However, after adding a column similar to `input_ids` (basically a list of integers) and saving the dataset to disk, the load time goes to >1 hour. I've even tried using `np.uint8` after seeing #1985 but it doesn't seem to be helping (the total size seems to be smaller though).
Does anyone know what could be the issue? Or does the casting of that column to `int8` need to happen in the function that writes the arrow table instead of in the `map` where I create the list of integers?
Tagging @lhoestq since you seem to be working on these issues and PRs :)
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SQuAD version
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"Hi ! This is 1.1 as specified by the download urls here:\r\n\r\nhttps://github.com/huggingface/nlp/blob/349ac4398a3bcae6356f14c5754483383a60e8a4/datasets/squad/squad.py#L50-L55",
"Got it. Thank you~"
] | 2021-03-23T07:47:54 | 2021-03-26T09:48:54 | 2021-03-26T09:48:54 |
NONE
| null | null | null |
Hi~
I want train on squad dataset. What's the version of the squad? Is it 1.1 or 1.0? I'm new in QA, I don't find some descriptions about it.
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CoNLL 2003 dataset not including German
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"Hello. I've been looking for information about German Conll2003 and found your question. Official site (https://www.clips.uantwerpen.be/conll2003/ner/) mentions that organizers provide only annotation. German texts (ECI Multilingual Text Corpus) are not freely available and can be ordered from the Linguistic Data Consortium.\r\n\r\nBut maybe something has changed since 2003.",
"You can find the reason for not including the German data here: https://github.com/huggingface/datasets/issues/4230."
] | 2021-03-22T19:23:56 | 2023-07-25T16:49:07 | 2023-07-25T16:49:07 |
NONE
| null | null | null |
Hello, thanks for all the work on developing and maintaining this amazing platform, which I am enjoying working with!
I was wondering if there is a reason why the German CoNLL 2003 dataset is not included in the [repository](https://github.com/huggingface/datasets/tree/master/datasets/conll2003), since a copy of it could be found in some places on the internet such as GitHub? I could help adding the German data to the hub, unless there are some copyright issues that I am unaware of...
This is considering that many work use the union of CoNLL 2002 and 2003 datasets for comparing cross-lingual NER transfer performance in `en`, `de`, `es`, and `nl`. E.g., [XLM-R](https://www.aclweb.org/anthology/2020.acl-main.747.pdf).
## Adding a Dataset
- **Name:** CoNLL 2003 German
- **Paper:** https://www.aclweb.org/anthology/W03-0419/
- **Data:** https://github.com/huggingface/datasets/tree/master/datasets/conll2003
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MDU6SXNzdWU4MzY5ODQwNDM=
| 2,092 |
How to disable making arrow tables in load_dataset ?
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[
"Hi ! We plan to add streaming features in the future.\r\n\r\nThis should allow to load a dataset instantaneously without generating the arrow table. The trade-off is that accessing examples from a streaming dataset must be done in an iterative way, and with an additional (but hopefully minor) overhead.\r\nWhat do you think about this ?\r\n\r\nIf you have ideas or suggestions of what you expect from such features as a user, feel free to share them, this is really valuable to us !",
"People mainly want this feature either because it takes too much time too make arrow tables, or they occupy too much memory on the disk. I think both the problem can be solved if we provide arrow tables themselves on datasets hub. Can we do this currently @lhoestq ? \r\n",
"@lhoestq I think the ```try_from_hf_gcs``` provide the same functionality. What all datasets are available on HF GCS? Are all the datasets on huggingFace datasets hub are made available on GCS, automatically?",
"Only datasets like wikipedia, wiki40b, wiki_dpr and natural questions are available already processed on the HF google storage. This is used to download directly the arrow file instead of building it from the original data files.",
"@lhoestq How can we make sure that the data we upload on HuggingFace hub is available in form of preprocessed arrow files ?",
"We're still working on this :) This will be available soon\r\nUsers will be able to put their processed arrow files on the Hub",
"Hi! You can now use `Dataset.push_to_hub` to store preprocessed files on the Hub.\r\n\r\nAnd to avoid downloading preprocessed files, you can use streaming by setting `streaming=True` in `load_dataset`."
] | 2021-03-21T04:50:07 | 2022-06-01T16:49:52 | 2022-06-01T16:49:52 |
NONE
| null | null | null |
Is there a way to disable the construction of arrow tables, or to make them on the fly as the dataset is being used ?
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| 2,089 |
Add documentaton for dataset README.md files
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[
"Hi ! We are using the [datasets-tagging app](https://github.com/huggingface/datasets-tagging) to select the tags to add.\r\n\r\nWe are also adding the full list of tags in #2107 \r\nThis covers multilinguality, language_creators, licenses, size_categories and task_categories.\r\n\r\nIn general if you want to add a tag that doesn't exist (for example for a custom license) you must make it start with `other-` and then a custom tag name.\r\n\r\nedit (@theo-m) if you ever find yourself resorting to adding an `other-*` tag, please do ping us somewhere so we can think about adding it to the \"official\" list :)",
"@lhoestq hmm - ok thanks for the answer.\r\nTo be honest I am not sure if this issue can be closed now.\r\nI just wanted to point out that this should either be documented or linked in the documentation.\r\nIf you feel like it is (will be) please just close this.",
"We're still working on the validation+documentation in this.\r\nFeel free to keep this issue open till we've added them",
"@lhoestq what is the status on this? Did you add documentation?",
"Hi ! There's the tagging app at https://huggingface.co/datasets/tagging/ that you can use.\r\nIt shows the list of all the tags you can use.\r\n\r\nIt is based on all the tag sets defined in this folder:\r\nhttps://github.com/huggingface/datasets/tree/master/src/datasets/utils/resources",
"@lhoestq is there something like this form Models?",
"I don't think so. Feel free to take a look at the tags of other models (example [here](https://huggingface.co/bert-base-uncased/blob/main/README.md)). But we should definitely have some docs or an app to write the tags. Feel free to open an issue in the `transformers` repo or in the `huggingface_hub` repo so we can discuss this",
"When modifying a README file, the Hub now displays a special UI with allowed values (see https://huggingface.co/docs/datasets/main/en/upload_dataset#create-a-dataset-card)."
] | 2021-03-20T11:44:38 | 2023-07-25T16:45:38 | 2023-07-25T16:45:37 |
CONTRIBUTOR
| null | null | null |
Hi,
the dataset README files have special headers.
Somehow a documenation of the allowed values and tags is missing.
Could you add that?
Just to give some concrete questions that should be answered imo:
- which values can be passted to multilinguality?
- what should be passed to language_creators?
- which values should licenses have? What do I say when it is a custom license? Should I add a link?
- how should I choose size_categories ? What are valid ranges?
- what are valid task_categories?
Thanks
Philip
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CUAD - Contract Understanding Atticus Dataset
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"+1 on this request"
] | 2021-03-19T09:27:43 | 2021-04-16T08:50:44 | 2021-04-16T08:50:44 |
CONTRIBUTOR
| null | null | null |
## Adding a Dataset
- **Name:** CUAD - Contract Understanding Atticus Dataset
- **Description:** As one of the only large, specialized NLP benchmarks annotated by experts, CUAD can serve as a challenging research benchmark for the broader NLP community.
- **Paper:** https://arxiv.org/abs/2103.06268
- **Data:** https://github.com/TheAtticusProject/cuad/
- **Motivation:** good domain specific datasets are valuable
Instructions to add a new dataset can be found [here](https://github.com/huggingface/datasets/blob/master/ADD_NEW_DATASET.md).
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`concatenate_datasets` throws error when changing the order of datasets to concatenate
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[
"Hi,\r\n\r\nthis bug is related to `Dataset.{remove_columns, rename_column, flatten}` not propagating the change to the schema metadata when the info features are updated, so this line is the culprit:\r\n```python\r\ncommon_voice_train = common_voice_train.remove_columns(['client_id', 'up_votes', 'down_votes', 'age', 'gender', 'accent', 'locale', 'segment'])\r\n\r\n``` \r\nThe order is important because the resulting dataset inherits the schema metadata of the first dataset passed to the `concatenate_datasets(...)` function (`pa.concat_tables` [docs](https://arrow.apache.org/docs/python/generated/pyarrow.concat_tables.html)). I'll try to fix this ASAP."
] | 2021-03-19T08:29:48 | 2021-04-09T09:25:33 | 2021-04-09T09:25:33 |
CONTRIBUTOR
| null | null | null |
Hey,
I played around with the `concatenate_datasets(...)` function: https://huggingface.co/docs/datasets/package_reference/main_classes.html?highlight=concatenate_datasets#datasets.concatenate_datasets
and noticed that when the order in which the datasets are concatenated changes an error is thrown where it should not IMO.
Here is a google colab to reproduce the error: https://colab.research.google.com/drive/17VTFU4KQ735-waWZJjeOHS6yDTfV5ekK?usp=sharing
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Multidimensional arrays in a Dataset
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[
"Hi !\r\n\r\nThis is actually supported ! but not yet in `from_pandas`.\r\nYou can use `from_dict` for now instead:\r\n```python\r\nfrom datasets import Dataset, Array2D, Features, Value\r\nimport pandas as pd\r\nimport numpy as np\r\n\r\ndataset = {\r\n 'bbox': [\r\n np.array([[1,2,3,4],[1,2,3,4],[1,2,3,4]]),\r\n np.array([[1,2,3,4],[1,2,3,4],[1,2,3,4]]),\r\n np.array([[1,2,3,4],[1,2,3,4],[1,2,3,4]]),\r\n np.array([[1,2,3,4],[1,2,3,4],[1,2,3,4]])\r\n ],\r\n 'input_ids': [1, 2, 3, 4]\r\n}\r\ndataset = Dataset.from_dict(dataset)\r\n```\r\n\r\nThis will work but to use it with the torch formatter you must specify the `Array2D` feature type in order to tell the shape:\r\n```python\r\nfrom datasets import Dataset, Array2D, Features, Value\r\nimport pandas as pd\r\nimport numpy as np\r\n\r\ndataset = {\r\n 'bbox': [\r\n np.array([[1,2,3,4],[1,2,3,4],[1,2,3,4]]),\r\n np.array([[1,2,3,4],[1,2,3,4],[1,2,3,4]]),\r\n np.array([[1,2,3,4],[1,2,3,4],[1,2,3,4]]),\r\n np.array([[1,2,3,4],[1,2,3,4],[1,2,3,4]])\r\n ],\r\n 'input_ids': [1, 2, 3, 4]\r\n}\r\ndataset = Dataset.from_dict(dataset, features=Features({\r\n \"bbox\": Array2D(shape=(3, 4), dtype=\"int64\"),\r\n \"input_ids\": Value(\"int64\")\r\n}))\r\ndataset.set_format(\"torch\")\r\nprint(dataset[0]['bbox'])\r\n# tensor([[1, 2, 3, 4],\r\n# [1, 2, 3, 4],\r\n# [1, 2, 3, 4]])\r\n```\r\nIf you don't specify the `Array2D` feature type, then the inferred type will be Sequence(Sequence(Value(\"int64\"))) and therefore the torch formatter will return list of tensors",
"Thanks for the explanation. \r\nWith my original DataFrame, I did\r\n```\r\ndataset = dataset.to_dict(\"list\")\r\n```\r\nand then the rest of the transformation from dictionary works just fine."
] | 2021-03-18T16:29:14 | 2021-03-25T12:46:53 | 2021-03-25T12:46:53 |
NONE
| null | null | null |
Hi,
I'm trying to put together a `datasets.Dataset` to be used with LayoutLM which is available in `transformers`. This model requires as input the bounding boxes of each of the token of a sequence. This is when I realized that `Dataset` does not support multi-dimensional arrays as a value for a column in a row.
The following code results in conversion error in pyarrow (`pyarrow.lib.ArrowInvalid: ('Can only convert 1-dimensional array values', 'Conversion failed for column bbox with type object')`)
```
from datasets import Dataset
import pandas as pd
import numpy as np
dataset = pd.DataFrame({
'bbox': [
np.array([[1,2,3,4],[1,2,3,4],[1,2,3,4]]),
np.array([[1,2,3,4],[1,2,3,4],[1,2,3,4]]),
np.array([[1,2,3,4],[1,2,3,4],[1,2,3,4]]),
np.array([[1,2,3,4],[1,2,3,4],[1,2,3,4]])
],
'input_ids': [1, 2, 3, 4]
})
dataset = Dataset.from_pandas(dataset)
```
Since I wanted to use pytorch for the downstream training task, I also tried a few ways to directly put in a column of 2-D pytorch tensor in a formatted dataset, but I can only have a list of 1-D tensors, or a list of arrays, or a list of lists.
```
import torch
from datasets import Dataset
import pandas as pd
dataset = pd.DataFrame({
'bbox': [
[[1,2,3,4],[1,2,3,4],[1,2,3,4]],
[[1,2,3,4],[1,2,3,4],[1,2,3,4]],
[[1,2,3,4],[1,2,3,4],[1,2,3,4]],
[[1,2,3,4],[1,2,3,4],[1,2,3,4]]
],
'input_ids': [1, 2, 3, 4]
})
dataset = Dataset.from_pandas(dataset)
def test(examples):
return {'bbbox': torch.Tensor(examples['bbox'])}
dataset = dataset.map(test)
print(dataset[0]['bbox'])
print(dataset[0]['bbbox'])
dataset.set_format(type='torch', columns=['input_ids', 'bbox'], output_all_columns=True)
print(dataset[0]['bbox'])
print(dataset[0]['bbbox'])
def test2(examples):
return {'bbbox': torch.stack(examples['bbox'])}
dataset = dataset.map(test2)
print(dataset[0]['bbox'])
print(dataset[0]['bbbox'])
```
Is is possible to support n-D arrays/tensors in datasets?
It seems that it can also be useful for this [feature request](https://github.com/huggingface/datasets/issues/263).
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MemoryError when computing WER metric
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[
"Hi ! Thanks for reporting.\r\nWe're indeed using `jiwer` to compute the WER.\r\n\r\nMaybe instead of calling `jiwer.wer` once for all the preditions/references we can compute the WER iteratively to avoid memory issues ? I'm not too familial with `jiwer` but this must be possible.\r\n\r\nCurrently the code to compute the WER is defined here:\r\n\r\nhttps://github.com/huggingface/nlp/blob/349ac4398a3bcae6356f14c5754483383a60e8a4/metrics/wer/wer.py#L93-L94",
"Hi,\r\n\r\nI've just pushed a pull request that is related to this issue https://github.com/huggingface/datasets/pull/2169. It's not iterative, but it should avoid memory errors. It's based on the editdistance python library. An iterative implementation should be as easy as storing scores and words stepwise and dividing at the end. ",
"I see, this was solved by other thread. Ok, let me know if you want to switch the implementation for any reason :)",
"Thanks for diving into this anyway ^^'\r\nAs you said this actually got solved a few days ago",
"Someone created an issue https://github.com/jitsi/jiwer/issues/40 at jiwer which shows that this is still a problem in the current version. Would be curious to figure out how this can be fixed by jiwer... :) I assume that it runs of out memory because it's trying to compute the WER over (too many) test samples?",
"Hi !\r\n\r\nIt's computed iteratively so not sure what could go wrong\r\n\r\nhttps://github.com/huggingface/datasets/blob/8afd0ba8c27800a55ea69d9fcd702dc97d9c16d8/metrics/wer/wer.py#L100-L106\r\n\r\n@NiklasHoltmeyer what version of `datasets` are you running ?\r\n",
"One possible explanation might be that it is the user who is passing all the sentences in a single element to `wer.compute`?\r\n\r\nAs current implementation iterates over the elements of `predictions` and `references`, this can be problematic if `predictions` and `references` contain a single huge element each. \r\n\r\nThis could be the case, for example, with a single string with all sentences:\r\n```python\r\nresult[\"predicted\"] = \"One sentence. Other sentence.\"\r\n```\r\nor with a __double__ nested list of sentence lists\r\n```python\r\nresult[\"predicted\"] = [[ [\"One sentence.\"], [\"Other sentence\"] ]]\r\n```\r\n\r\nThe user should check the dimensions of the data structure passed to `predictions` and `references`.",
"Hi all,\r\n\r\nin my case I was using and older version of datasets and, as @albertvillanova points out, passing the full list of sentences for the metric calculation. The problem was in the way jiwer implements WER, as it tries to compute WER for the full list at once instead of doing it element-wise. I think that with the latest implementation of datasets, or by using the alternative WER function that I've contributed on this [pull request](https://github.com/huggingface/datasets/pull/2169) there shouldn't be memory errors.",
"@lhoestq i was using Datasets==1.5.0 with 1.6.1 it worked (atleast the first run) but 1.5.0 is not compatible with my preprocessing. i cant save my dataset to a parquet file while using the latest datasets version\r\n\r\n-> \r\n```\r\n File \"../preprocess_dataset.py\", line 132, in <module>\r\n pq.write_table(train_dataset.data, f'{resampled_data_dir}/{data_args.dataset_config_name}.train.parquet')\r\n File \"/usr/local/lib/python3.8/dist-packages/pyarrow/parquet.py\", line 1674, in write_table\r\n writer.write_table(table, row_group_size=row_group_size)\r\n File \"/usr/local/lib/python3.8/dist-packages/pyarrow/parquet.py\", line 588, in write_table\r\n self.writer.write_table(table, row_group_size=row_group_size)\r\nTypeError: Argument 'table' has incorrect type (expected pyarrow.lib.Table, got ConcatenationTable)\r\n``` \r\n\r\nif i do \r\n```\r\nimport pyarrow.parquet as pq\r\n...\r\n...\r\npq.write_table(train_dataset.data, 'train.parquet')\r\npq.write_table(eval_dataset.data, 'eval.parquet')\r\n```\r\n\r\nwhile using 1.6.1. and its working with 1.5.0\r\n",
"Hi ! You can pass dataset.data.table instead of dataset.data to pq.write_table",
"This seems to be working so far! Thanks!"
] | 2021-03-18T11:30:05 | 2021-05-01T08:31:49 | 2021-04-06T07:20:43 |
NONE
| null | null | null |
Hi, I'm trying to follow the ASR example to try Wav2Vec. This is the code that I use for WER calculation:
```
wer = load_metric("wer")
print(wer.compute(predictions=result["predicted"], references=result["target"]))
```
However, I receive the following exception:
`Traceback (most recent call last):
File "/home/diego/IpGlobal/wav2vec/test_wav2vec.py", line 51, in <module>
print(wer.compute(predictions=result["predicted"], references=result["target"]))
File "/home/diego/miniconda3/envs/wav2vec3.6/lib/python3.6/site-packages/datasets/metric.py", line 403, in compute
output = self._compute(predictions=predictions, references=references, **kwargs)
File "/home/diego/.cache/huggingface/modules/datasets_modules/metrics/wer/73b2d32b723b7fb8f204d785c00980ae4d937f12a65466f8fdf78706e2951281/wer.py", line 94, in _compute
return wer(references, predictions)
File "/home/diego/miniconda3/envs/wav2vec3.6/lib/python3.6/site-packages/jiwer/measures.py", line 81, in wer
truth, hypothesis, truth_transform, hypothesis_transform, **kwargs
File "/home/diego/miniconda3/envs/wav2vec3.6/lib/python3.6/site-packages/jiwer/measures.py", line 192, in compute_measures
H, S, D, I = _get_operation_counts(truth, hypothesis)
File "/home/diego/miniconda3/envs/wav2vec3.6/lib/python3.6/site-packages/jiwer/measures.py", line 273, in _get_operation_counts
editops = Levenshtein.editops(source_string, destination_string)
MemoryError`
My system has more than 10GB of available RAM. Looking at the code, I think that it could be related to the way jiwer does the calculation, as it is pasting all the sentences in a single string before calling Levenshtein editops function.
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Issue: Dataset download error
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[
"Hi @XuhuiZhou, thanks for reporting this issue. \r\n\r\nIndeed, the old links are no longer valid (404 Not Found error), and the script must be updated with the new links to Google Drive.",
"It would be nice to update the urls indeed !\r\n\r\nTo do this, you just need to replace the urls in `iwslt2017.py` and then update the dataset_infos.json file with\r\n```\r\ndatasets-cli test ./datasets/iwslt2017 --all_configs --save_infos --ignore_verifications\r\n```",
"Is this a command to update my local files or fix the file Github repo in general? (I am not so familiar with the datasets-cli command here)\r\n\r\nI also took a brief look at the **Sharing your dataset** section, looks like I could fix that locally and push it to the repo? I guess we are \"canonical\" category?",
"This command will update your local file. Then you can open a Pull Request to push your fix to the github repo :)\r\nAnd yes you are right, it is a \"canonical\" dataset, i.e. a dataset script defined in this github repo (as opposed to dataset repositories of users on the huggingface hub)",
"Hi, thanks for the answer. \r\n\r\nI gave a try to the problem today. But I encountered an upload error: \r\n\r\n```\r\ngit push -u origin fix_link_iwslt\r\nEnter passphrase for key '/home2/xuhuizh/.ssh/id_rsa': \r\nERROR: Permission to huggingface/datasets.git denied to XuhuiZhou.\r\nfatal: Could not read from remote repository.\r\n\r\nPlease make sure you have the correct access rights\r\nand the repository exists.\r\n```\r\n\r\nAny insight here? \r\n\r\nBy the way, when I run the datasets-cli command, it shows the following error, but does not seem to be the error coming from `iwslt.py`\r\n\r\n```\r\nTraceback (most recent call last):\r\n File \"/home2/xuhuizh/anaconda3/envs/UMT/bin/datasets-cli\", line 33, in <module>\r\n sys.exit(load_entry_point('datasets', 'console_scripts', 'datasets-cli')())\r\n File \"/home2/xuhuizh/projects/datasets/src/datasets/commands/datasets_cli.py\", line 35, in main\r\n service.run()\r\n File \"/home2/xuhuizh/projects/datasets/src/datasets/commands/test.py\", line 141, in run\r\n try_from_hf_gcs=False,\r\n File \"/home2/xuhuizh/projects/datasets/src/datasets/builder.py\", line 579, in download_and_prepare\r\n dl_manager=dl_manager, verify_infos=verify_infos, **download_and_prepare_kwargs\r\n File \"/home2/xuhuizh/projects/datasets/src/datasets/builder.py\", line 639, in _download_and_prepare\r\n self.info.download_checksums, dl_manager.get_recorded_sizes_checksums(), \"dataset source files\"\r\n File \"/home2/xuhuizh/projects/datasets/src/datasets/utils/info_utils.py\", line 32, in verify_checksums\r\n raise ExpectedMoreDownloadedFiles(str(set(expected_checksums) - set(recorded_checksums)))\r\ndatasets.utils.info_utils.ExpectedMoreDownloadedFiles: {'https://wit3.fbk.eu/archive/2017-01-trnmted//texts/DeEnItNlRo/DeEnItNlRo/DeEnItNlRo-DeEnItNlRo.tgz'}\r\n```",
"Hi ! To create a PR on this repo your must fork it and create a branch on your fork. See how to fork the repo [here](https://github.com/huggingface/datasets/blob/master/ADD_NEW_DATASET.md#start-by-preparing-your-environment).\r\nAnd to make the command work without the `ExpectedMoreDownloadedFiles` error, you just need to use the `--ignore_verifications` flag.",
"Hi @XuhuiZhou,\r\n\r\nAs @lhoestq has well explained, you need to fork HF's repository, create a feature branch in your fork, push your changes to it and then open a Pull Request to HF's upstream repository. This is so because at HuggingFace Datasets we follow a development model called \"Fork and Pull Model\". You can find more information here:\r\n- [Understanding the GitHub flow](https://guides.github.com/introduction/flow/)\r\n- [Forking Projects](https://guides.github.com/activities/forking/)\r\n\r\nAlternatively, if you find all these steps too complicated, you can use the GitHub official command line tool: [GitHub CLI](https://cli.github.com/). Once installed, in order to create a Pull Request, you only need to use this command:\r\n```shell\r\ngh pr create --web\r\n```\r\nThis utility will automatically create the fork, push your changes and open a Pull Request, under the hood."
] | 2021-03-18T06:36:06 | 2021-03-22T11:52:31 | null |
NONE
| null | null | null |
The download link in `iwslt2017.py` file does not seem to work anymore.
For example, `FileNotFoundError: Couldn't find file at https://wit3.fbk.eu/archive/2017-01-trnted/texts/zh/en/zh-en.tgz`
Would be nice if we could modify it script and use the new downloadable link?
|
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ConnectionError: Couldn't reach common_voice.py
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[
"Hi @LifaSun, thanks for reporting this issue.\r\n\r\nSometimes, GitHub has some connectivity problems. Could you confirm that the problem persists?",
"@albertvillanova Thanks! It works well now. "
] | 2021-03-18T01:19:06 | 2021-03-20T10:29:41 | 2021-03-20T10:29:41 |
NONE
| null | null | null |
When I run:
from datasets import load_dataset, load_metric
common_voice_train = load_dataset("common_voice", "zh-CN", split="train+validation")
common_voice_test = load_dataset("common_voice", "zh-CN", split="test")
Got:
ConnectionError: Couldn't reach https://raw.githubusercontent.com/huggingface/datasets/master/datasets/common_voice/common_voice.py
Version:
1.4.1
Thanks! @lhoestq @LysandreJik @thomwolf
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Multiprocessing is slower than single process
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[
"dupe of #1992"
] | 2021-03-17T16:08:58 | 2021-03-18T09:10:23 | 2021-03-18T09:10:23 |
CONTRIBUTOR
| null | null | null |
```python
# benchmark_filter.py
import logging
import sys
import time
from datasets import load_dataset, set_caching_enabled
if __name__ == "__main__":
set_caching_enabled(False)
logging.basicConfig(level=logging.DEBUG)
bc = load_dataset("bookcorpus")
now = time.time()
try:
bc["train"].filter(lambda x: len(x["text"]) < 64, num_proc=int(sys.argv[1]))
except Exception as e:
print(f"cancelled: {e}")
elapsed = time.time() - now
print(elapsed)
```
Running `python benchmark_filter.py 1` (20min+) is faster than `python benchmark_filter.py 2` (2hrs+)
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ArrowInvalid issue for squad v2 dataset
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[
"Hi ! This error happens when you use `map` in batched mode and then your function doesn't return the same number of values per column.\r\n\r\nIndeed since you're using `map` in batched mode, `prepare_validation_features` must take a batch as input (i.e. a dictionary of multiple rows of the dataset), and return a batch.\r\n\r\nHowever it seems like `tokenized_examples` doesn't have the same number of elements in each field. One field seems to have `1180` elements while `candidate_attention_mask` only has `1178`."
] | 2021-03-17T13:51:49 | 2021-08-04T17:57:16 | 2021-08-04T17:57:16 |
NONE
| null | null | null |
Hello, I am using the huggingface official question answering example notebook (https://colab.research.google.com/github/huggingface/notebooks/blob/master/examples/question_answering.ipynb).
In the prepare_validation_features function, I made some modifications to tokenize a new set of quesions with the original contexts and save them in three different list called candidate_input_dis, candidate_attetion_mask and candidate_token_type_ids. When I try to run the next cell for dataset.map, I got the following error:
`ArrowInvalid: Column 1 named candidate_attention_mask expected length 1180 but got length 1178`
My code is as follows:
```
def generate_candidate_questions(examples):
val_questions = examples["question"]
candididate_questions = random.sample(datasets["train"]["question"], len(val_questions))
candididate_questions = [x[:max_length] for x in candididate_questions]
return candididate_questions
def prepare_validation_features(examples, use_mixing=False):
pad_on_right = tokenizer.padding_side == "right"
tokenized_examples = tokenizer(
examples["question" if pad_on_right else "context"],
examples["context" if pad_on_right else "question"],
truncation="only_second" if pad_on_right else "only_first",
max_length=max_length,
stride=doc_stride,
return_overflowing_tokens=True,
return_offsets_mapping=True,
padding="max_length",
)
if use_mixing:
candidate_questions = generate_candidate_questions(examples)
tokenized_candidates = tokenizer(
candidate_questions if pad_on_right else examples["context"],
examples["context"] if pad_on_right else candidate_questions,
truncation="only_second" if pad_on_right else "only_first",
max_length=max_length,
stride=doc_stride,
return_overflowing_tokens=True,
return_offsets_mapping=True,
padding="max_length",
)
sample_mapping = tokenized_examples.pop("overflow_to_sample_mapping")
tokenized_examples["example_id"] = []
if use_mixing:
tokenized_examples["candidate_input_ids"] = tokenized_candidates["input_ids"]
tokenized_examples["candidate_attention_mask"] = tokenized_candidates["attention_mask"]
tokenized_examples["candidate_token_type_ids"] = tokenized_candidates["token_type_ids"]
for i in range(len(tokenized_examples["input_ids"])):
sequence_ids = tokenized_examples.sequence_ids(i)
context_index = 1 if pad_on_right else 0
sample_index = sample_mapping[i]
tokenized_examples["example_id"].append(examples["id"][sample_index])
tokenized_examples["offset_mapping"][i] = [
(o if sequence_ids[k] == context_index else None)
for k, o in enumerate(tokenized_examples["offset_mapping"][i])
]
return tokenized_examples
validation_features = datasets["validation"].map(
lambda xs: prepare_validation_features(xs, True),
batched=True,
remove_columns=datasets["validation"].column_names
)
```
I guess this might happen because of the batched=True. I see similar issues in this repo related to arrow table length mismatch error, but in their cases, the numbers vary a lot. In my case, this error always happens when the expected length and unexpected length are very close. Thanks for the help!
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PyTorch not available error on SageMaker GPU docker though it is installed
|
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[
"cc @philschmid ",
"Hey @sivakhno,\r\n\r\nhow does your `requirements.txt` look like to install the `datasets` library and which version of it are you running? Can you try to install `datasets>=1.4.0`",
"Hi @philschmid - thanks for suggestion. I am using `datasets==1.4.1`. \r\nI have also tried using `torch=1.6.0` (docker `763104351884.dkr.ecr.eu-central-1.amazonaws.com/pytorch-training:1.6.0-gpu-py3 `), but the error is the same. ",
"Could paste the code you use the start your training job and the fine-tuning script you run? ",
"@sivakhno this should be now fixed in `datasets>=1.5.0`. ",
"@philschmid Recently released tensorflow-macos seems to be missing. ",
"I've created a PR to add this. "
] | 2021-03-17T10:04:27 | 2021-06-14T04:47:30 | 2021-06-14T04:47:30 |
NONE
| null | null | null |
I get en error when running data loading using SageMaker SDK
```
File "main.py", line 34, in <module>
run_training()
File "main.py", line 25, in run_training
dm.setup('fit')
File "/opt/conda/lib/python3.6/site-packages/pytorch_lightning/core/datamodule.py", line 92, in wrapped_fn
return fn(*args, **kwargs)
File "/opt/ml/code/data_module.py", line 103, in setup
self.dataset[split].set_format(type="torch", columns=self.columns)
File "/opt/conda/lib/python3.6/site-packages/datasets/fingerprint.py", line 337, in wrapper
out = func(self, *args, **kwargs)
File "/opt/conda/lib/python3.6/site-packages/datasets/arrow_dataset.py", line 995, in set_format
_ = get_formatter(type, **format_kwargs)
File "/opt/conda/lib/python3.6/site-packages/datasets/formatting/__init__.py", line 114, in get_formatter
raise _FORMAT_TYPES_ALIASES_UNAVAILABLE[format_type]
ValueError: PyTorch needs to be installed to be able to return PyTorch tensors.
```
when trying to execute dataset loading using this notebook https://github.com/PyTorchLightning/pytorch-lightning/blob/master/notebooks/04-transformers-text-classification.ipynb, specifically lines
```
self.columns = [c for c in self.dataset[split].column_names if c in self.loader_columns]
self.dataset[split].set_format(type="torch", columns=self.columns)
```
The SageMaker docker image used is 763104351884.dkr.ecr.eu-central-1.amazonaws.com/pytorch-training:1.4.0-gpu-py3 .
By running container interactively I have checked that torch loading completes successfully by executing `https://github.com/huggingface/datasets/blob/master/src/datasets/config.py#L39`.
Also as a first line in the data loading module I have
```
import os
os.environ["USE_TF"] = "0"
os.environ["USE_TORCH"] = "1"
````
But unfortunately the error stills persists. Any suggestions would be appreciated as I am stack.
Many Thanks!
|
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Multiprocessing windows error
|
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[
"Hi ! Thanks for reporting.\r\nThis looks like a bug, could you try to provide a minimal code example that reproduces the issue ? This would be very helpful !\r\n\r\nOtherwise I can try to run the wav2vec2 code above on my side but probably not this week..",
"```\r\nfrom datasets import load_dataset\r\n\r\ndataset = load_dataset('glue', 'mrpc', split='train')\r\n\r\n\r\nupdated_dataset = dataset.map(lambda example: {'sentence1': 'My sentence: ' + example['sentence1']}, num_proc=4)\r\n\r\n```",
"\r\n\r\n\r\n\r\n\r\nI was able to copy some of the shell \r\nThis is repeating every half second\r\nWin 10, Anaconda with python 3.8, datasets installed from main branche\r\n```\r\n\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\spawn.py\", line 287, in _fixup_main_from_path\r\n _check_not_importing_main()\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\spawn.py\", line 116, in spawn_main\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\spawn.py\", line 134, in _check_not_importing_main\r\n main_content = runpy.run_path(main_path,\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\runpy.py\", line 265, in run_path\r\n exitcode = _main(fd, parent_sentinel)\r\n raise RuntimeError('''\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\spawn.py\", line 125, in _main\r\nRuntimeError:\r\n An attempt has been made to start a new process before the\r\n current process has finished its bootstrapping phase.\r\n\r\n This probably means that you are not using fork to start your\r\n child processes and you have forgotten to use the proper idiom\r\n in the main module:\r\n\r\n if __name__ == '__main__':\r\n freeze_support()\r\n ...\r\n\r\n The \"freeze_support()\" line can be omitted if the program\r\n is not going to be frozen to produce an executable. return _run_module_code(code, init_globals, run_name,\r\n prepare(preparation_data)\r\n\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\runpy.py\", line 97, in _run_module_code\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\spawn.py\", line 236, in prepare\r\n _run_code(code, mod_globals, init_globals,\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\runpy.py\", line 87, in _run_code\r\n _fixup_main_from_path(data['init_main_from_path'])\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\spawn.py\", line 287, in _fixup_main_from_path\r\n exec(code, run_globals)\r\n File \"F:\\Codes\\Python Apps\\asr\\test.py\", line 6, in <module>\r\n updated_dataset = dataset.map(lambda example: {'sentence1': 'My sentence: ' + example['sentence1']}, num_proc=4)\r\n main_content = runpy.run_path(main_path,\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\datasets\\arrow_dataset.py\", line 1370, in map\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\runpy.py\", line 265, in run_path\r\n with Pool(num_proc, initargs=(RLock(),), initializer=tqdm.set_lock) as pool:\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\context.py\", line 119, in Pool\r\n return _run_module_code(code, init_globals, run_name,\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\runpy.py\", line 97, in _run_module_code\r\n _run_code(code, mod_globals, init_globals,\r\n return Pool(processes, initializer, initargs, maxtasksperchild,\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\runpy.py\", line 87, in _run_code\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\pool.py\", line 212, in __init__\r\n exec(code, run_globals)\r\n File \"F:\\Codes\\Python Apps\\asr\\test.py\", line 6, in <module>\r\n self._repopulate_pool()\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\pool.py\", line 303, in _repopulate_pool\r\n updated_dataset = dataset.map(lambda example: {'sentence1': 'My sentence: ' + example['sentence1']}, num_proc=4)\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\datasets\\arrow_dataset.py\", line 1370, in map\r\n return self._repopulate_pool_static(self._ctx, self.Process,\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\pool.py\", line 326, in _repopulate_pool_static\r\n with Pool(num_proc, initargs=(RLock(),), initializer=tqdm.set_lock) as pool:\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\context.py\", line 119, in Pool\r\n w.start()\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\process.py\", line 121, in start\r\n return Pool(processes, initializer, initargs, maxtasksperchild,\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\pool.py\", line 212, in __init__\r\n self._popen = self._Popen(self)\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\context.py\", line 327, in _Popen\r\n self._repopulate_pool()\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\pool.py\", line 303, in _repopulate_pool\r\n return Popen(process_obj)\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\popen_spawn_win32.py\", line 45, in __init__\r\n return self._repopulate_pool_static(self._ctx, self.Process,\r\n prep_data = spawn.get_preparation_data(process_obj._name)\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\pool.py\", line 326, in _repopulate_pool_static\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\spawn.py\", line 154, in get_preparation_data\r\n _check_not_importing_main()\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\spawn.py\", line 134, in _check_not_importing_main\r\n w.start()\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\process.py\", line 121, in start\r\n raise RuntimeError('''\r\nRuntimeError:\r\n An attempt has been made to start a new process before the\r\n current process has finished its bootstrapping phase.\r\n\r\n This probably means that you are not using fork to start your\r\n child processes and you have forgotten to use the proper idiom\r\n in the main module:\r\n\r\n if __name__ == '__main__':\r\n freeze_support()\r\n ...\r\n```",
"Thanks this is really helpful !\r\nI'll try to reproduce on my side and come back to you",
"if __name__ == '__main__':\r\n\r\n\r\nThis line before calling the map function stops the error but the script still repeats endless",
"Indeed you needed `if __name__ == '__main__'` since accoding to [this stackoverflow post](https://stackoverflow.com/a/18205006):\r\n\r\n> On Windows the subprocesses will import (i.e. execute) the main module at start. You need to insert an if __name__ == '__main__': guard in the main module to avoid creating subprocesses recursively.\r\n\r\nRegarding the hanging issue, can you try to update `dill` and `multiprocess` ?",
"It's already on the newest version",
"```\r\nTraceback (most recent call last):\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\shutil.py\", line 791, in move\r\n os.rename(src, real_dst)\r\nFileExistsError: [WinError 183] Eine Datei kann nicht erstellt werden, wenn sie bereits vorhanden ist: 'D:\\\\huggingfacecache\\\\common_voice\\\\de\\\\6.1.0\\\\0041e06ab061b91d0a23234a2221e87970a19cf3a81b20901474cffffeb7869f\\\\tmpx9fl_jg8' -> 'D:\\\\huggingfacecache\\\\common_voice\\\\de\\\\6.1.0\\\\0041e06ab061b91d0a23234a2221e87970a19cf3a81b20901474cffffeb7869f\\\\cache-9b4f203a63742dfc.arrow'\r\n\r\nDuring handling of the above exception, another exception occurred:\r\n\r\nTraceback (most recent call last):\r\n File \"<string>\", line 1, in <module>\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\spawn.py\", line 116, in spawn_main\r\n exitcode = _main(fd, parent_sentinel)\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\spawn.py\", line 125, in _main\r\n prepare(preparation_data)\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\spawn.py\", line 236, in prepare\r\n _fixup_main_from_path(data['init_main_from_path'])\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\multiprocess\\spawn.py\", line 287, in _fixup_main_from_path\r\n main_content = runpy.run_path(main_path,\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\runpy.py\", line 265, in run_path\r\n return _run_module_code(code, init_globals, run_name,\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\runpy.py\", line 97, in _run_module_code\r\n _run_code(code, mod_globals, init_globals,\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\runpy.py\", line 87, in _run_code\r\n exec(code, run_globals)\r\n File \"F:\\Codes\\Python Apps\\asr\\cvtrain.py\", line 243, in <module>\r\n common_voice_train = common_voice_train.map(remove_special_characters, remove_columns=[\"sentence\"])\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\datasets\\arrow_dataset.py\", line 1339, in map\r\n return self._map_single(\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\datasets\\arrow_dataset.py\", line 203, in wrapper\r\n out: Union[\"Dataset\", \"DatasetDict\"] = func(self, *args, **kwargs)\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\datasets\\fingerprint.py\", line 337, in wrapper\r\n out = func(self, *args, **kwargs)\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\site-packages\\datasets\\arrow_dataset.py\", line 1646, in _map_single\r\n shutil.move(tmp_file.name, cache_file_name)\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\shutil.py\", line 805, in move\r\n copy_function(src, real_dst)\r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\shutil.py\", line 435, in copy2\r\n copyfile(src, dst, follow_symlinks=follow_symlinks)\r\n 0%| | 0/27771 [00:00<?, ?ex/s] \r\n File \"C:\\Users\\flozi\\anaconda3\\envs\\wav2vec\\lib\\shutil.py\", line 264, in copyfile\r\n with open(src, 'rb') as fsrc, open(dst, 'wb') as fdst:\r\nOSError: [Errno 22] Invalid argument: 'D:\\\\huggingfacecache\\\\common_voice\\\\de\\\\6.1.0\\\\0041e06ab061b91d0a23234a2221e87970a19cf3a81b20901474cffffeb7869f\\\\cache-9b4f203a63742dfc.arrow'\r\n```\r\n\r\nI was adding freeze support before calling the mapping function like this\r\nif __name__ == '__main__':\r\n freeze_support()\r\n dataset.map(....)",
"Usually OSError of an arrow file on windows means that the file is currently opened as a dataset object, so you can't overwrite it until the dataset object falls out of scope.\r\nCan you make sure that there's no dataset object that loaded the `cache-9b4f203a63742dfc.arrow` file ?",
"Now I understand\r\nThe error occures because the script got restarted in another thread, so the object is already loaded.\r\nStill don't have an idea why a new thread starts the whole script again"
] | 2021-03-17T09:12:28 | 2021-08-04T17:59:08 | 2021-08-04T17:59:08 |
CONTRIBUTOR
| null | null | null |
As described here https://huggingface.co/blog/fine-tune-xlsr-wav2vec2
When using the num_proc argument on windows the whole Python environment crashes and hanging in loop.
For example at the map_to_array part.
An error occures because the cache file already exists and windows throws and error. After this the log crashes into an loop
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Only user permission of saved cache files, not group
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"Hi ! Thanks for reporting.\r\n\r\nCurrently there's no way to specify this.\r\n\r\nWhen loading/processing a dataset, the arrow file is written using a temporary file. Then once writing is finished, it's moved to the cache directory (using `shutil.move` [here](https://github.com/huggingface/datasets/blob/f6b8251eb975f66a568356d2a40d86442c03beb9/src/datasets/arrow_dataset.py#L1646))\r\n\r\nThat means it keeps the permissions specified by the `tempfile.NamedTemporaryFile` object, i.e. `-rw-------` instead of `-rw-r--r--`. Improving this could be a nice first contribution to the library :)",
"Hi @lhoestq,\r\nI looked into this and yes you're right. The `NamedTemporaryFile` is always created with mode 0600, which prevents group from reading the file. Should we change the permissions of `tmp_file.name` [here](https://github.com/huggingface/datasets/blob/f6b8251eb975f66a568356d2a40d86442c03beb9/src/datasets/arrow_dataset.py#L1871) and [here](https://github.com/huggingface/datasets/blob/f6b8251eb975f66a568356d2a40d86442c03beb9/src/datasets/arrow_dataset.py#L1590), post creation to 0644 inorder for group and others to read it?",
"Good idea :) we could even update the permissions after the file has been moved by shutil.move [here](https://github.com/huggingface/datasets/blob/f6b8251eb975f66a568356d2a40d86442c03beb9/src/datasets/arrow_dataset.py#L1899) and [here](https://github.com/huggingface/datasets/blob/f6b8251eb975f66a568356d2a40d86442c03beb9/src/datasets/arrow_dataset.py#L1646) actually.\r\nApparently they set the default 0600 for temporary files for security reasons, so let's update the umask only after the file has been moved",
"Would it be possible to actually set the umask based on a user provided argument? For example, a popular usecase my team has is using a shared file-system for processing datasets. This may involve writing/deleting other files, or changing filenames, which a -rw-r--r-- wouldn't fix. ",
"Note that you can get the cache files of a dataset with the `cache_files` attributes.\r\nThen you can `chmod` those files and all the other cache files in the same directory.\r\n\r\nMoreover we can probably keep the same permissions after each transform. This way you just need to set the permissions once after doing `load_dataset` for example, and then all the new transformed cached files will have the same permissions.\r\nWhat do you think ?",
"This means we'll check the permissions of other `cache_files` already created for a dataset before setting permissions for new `cache_files`?",
"You can just check the permission of `dataset.cache_files[0]` imo",
"> This way you just need to set the permissions once after doing load_dataset for example, and then all the new transformed cached files will have the same permissions.\r\n\r\nI was referring to this. Ensuring that newly generated `cache_files` have the same permissions",
"Yes exactly\r\n\r\nI imagine users can first do `load_dataset`, then chmod on the arrow files. After that all the new cache files could have the same permissions as the first arrow files. Opinions on this ?",
"Sounds nice but I feel this is a sub-part of the approach mentioned by @siddk. Instead of letting the user set new permissions by itself first and then making sure newly generated files have same permissions why don't we ask the user initially only what they want? What are your thoughts?",
"Yes sounds good. Should this be a parameter in `load_dataset` ? Or an env variable ? Or use the value of `os.umask` ?",
"Ideally it should be a parameter in `load_dataset` but I'm not sure how important it is for the users (considering only important things should go into `load_dataset` parameters)",
"I think it's fairly important; for context, our team uses a shared file-system where many folks run experiments based on datasets that are cached by other users.\r\n\r\nFor example, I might start a training run, downloading a dataset. Then, a couple of days later, a collaborator using the same repository might want to use the same dataset on the same shared filesystem, but won't be able to under the default permissions.\r\n\r\nBeing able to specify directly in the top-level `load_dataset()` call seems important, but an equally valid option would be to just inherit from the running user's `umask` (this should probably be the default anyway).\r\n\r\nSo basically, argument that takes a custom set of permissions, and by default, use the running user's umask!",
"Maybe let's start by defaulting to the user's umask !\r\nDo you want to give it a try @bhavitvyamalik ?",
"Yeah sure! Instead of using default `0o644` should I first extract umask of current user and then use `os.umask` on it? We can do it inside `Dataset` class so that all folders/files created during the call use running user's umask\r\n\r\n",
"You can get the umask using `os.umask` and then I guess you can just use `os.chmod` as in your previous PR, but with the right permissions depending on the umask.",
"FWIW, we have this issue with other caches - e.g. `transformers` model files. So probably will need to backport this into `transformers` as well.\r\n\r\nthanks @thomwolf for the pointer.",
"Hi @stas00,\r\nFor this should we use the same umask code in the respective model directory inside `TRANSFORMERS_CACHE`?",
"That sounds very right to me, @bhavitvyamalik ",
"The cluster I am working on does not allow me to change the permission of the files with os.chmod. I was wondering if there is any workaround for this? My cache is in a GCP bucket and I can't change file permissions once I mount it.",
"@vmurahari3 what error do you have exactly ?",
"I get a permission denied error on https://github.com/huggingface/datasets/blob/b8363e0539c6f0cb5de49af32962cf2eb4c47395/src/datasets/arrow_dataset.py#L2799. I suspect I don't have permissions to change group permissions. I am mounting a GCP bucket through [gcsfuse](https://github.com/GoogleCloudPlatform/gcsfuse). ",
"What @lhoestq is asking for is the full multi-line traceback - it's almost never enough to show the last line - a full stack is needed to get the context. Thank you!\r\n\r\nI wonder if a workaround is to try/except and then issue a warning if this fails?",
"Hello, I'm working on a project with a very similar setup to the one mentioned by @siddk, namely we have a shared cache directory in the team that we wish to use to avoid redundant dataset downloads. However, we're hitting `PermissionError` when one member of the team tries to reload a dataset that was downloaded by another team member (stack trace below).\r\n\r\nConcretely, we first create a shared directory and give everyone read, write, execute permissions as follows (I know this isn't best practice 🤫):\r\n\r\n```shell\r\nmkdir shared-folder\r\nchmod -R 777 shared-folder\r\n```\r\n\r\nWe then set the following in our `.bashrc` profiles:\r\n\r\n```\r\n# Hugging Face caches\r\nexport HUGGINGFACE_HUB_CACHE=/path/to/shared-folder\r\nexport HF_DATASETS_CACHE=/path/to/shared-folder\r\n\r\n# For shared access to the shared-folder directory\r\numask 000\r\n```\r\n\r\nNow, running e.g. `load_dataset(\"emotion\")` the first time works (as expected), but when another team member tries to load from cache we get something like:\r\n\r\n```\r\nTraceback (most recent call last):\r\n File \"<stdin>\", line 1, in <module>\r\n File \"~/miniconda3/envs/llama-nol/lib/python3.10/site-packages/datasets/load.py\", line 1759, in load_dataset\r\n builder_instance = load_dataset_builder(\r\n File \"~/miniconda3/envs/llama-nol/lib/python3.10/site-packages/datasets/load.py\", line 1496, in load_dataset_builder\r\n dataset_module = dataset_module_factory(\r\n File \"~/miniconda3/envs/llama-nol/lib/python3.10/site-packages/datasets/load.py\", line 1218, in dataset_module_factory\r\n raise e1 from None\r\n File \"~/miniconda3/envs/llama-nol/lib/python3.10/site-packages/datasets/load.py\", line 1193, in dataset_module_factory\r\n ).get_module()\r\n File \"~/miniconda3/envs/llama-nol/lib/python3.10/site-packages/datasets/load.py\", line 903, in get_module\r\n local_path = self.download_loading_script()\r\n File \"~/miniconda3/envs/llama-nol/lib/python3.10/site-packages/datasets/load.py\", line 871, in download_loading_script\r\n return cached_path(file_path, download_config=download_config)\r\n File \"~/miniconda3/envs/llama-nol/lib/python3.10/site-packages/datasets/utils/file_utils.py\", line 210, in cached_path\r\n output_path = ExtractManager(cache_dir=download_config.cache_dir).extract(\r\n File \"~/miniconda3/envs/llama-nol/lib/python3.10/site-packages/datasets/utils/extract.py\", line 42, in extract\r\n extractor_format = self.extractor.infer_extractor_format(input_path)\r\n File \"~/miniconda3/envs/llama-nol/lib/python3.10/site-packages/datasets/utils/extract.py\", line 287, in infer_extractor_format\r\n if extractor.is_extractable(path, magic_number=magic_number):\r\n File \"~/miniconda3/envs/llama-nol/lib/python3.10/site-packages/datasets/utils/extract.py\", line 84, in is_extractable\r\n return tarfile.is_tarfile(path)\r\n File \"~/miniconda3/envs/llama-nol/lib/python3.10/tarfile.py\", line 2517, in is_tarfile\r\n t = open(name)\r\n File \"~/miniconda3/envs/llama-nol/lib/python3.10/tarfile.py\", line 1632, in open\r\n return func(name, \"r\", fileobj, **kwargs)\r\n File \"~/miniconda3/envs/llama-nol/lib/python3.10/tarfile.py\", line 1698, in gzopen\r\n fileobj = GzipFile(name, mode + \"b\", compresslevel, fileobj)\r\n File \"~/miniconda3/envs/llama-nol/lib/python3.10/gzip.py\", line 174, in __init__\r\n fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')\r\nPermissionError: [Errno 13] Permission denied: '/path/to/shared-folder/downloads/4e7db366b1ea045d0faa083a2e47ac87326ad8e653f894763b0982c2a1e94078.cc96367835404d4195bf75b2602e6dbbfd2da9288170fc0b2298fc0e376ff52a.py'\r\n```\r\n\r\nIf I understand this comment from @bhavitvyamalik:\r\n\r\n> Yeah sure! Instead of using default `0o644` should I first extract umask of current user and then use `os.umask` on it? We can do it inside `Dataset` class so that all folders/files created during the call use running user's umask\r\n\r\nthe goal was to infer the `umask` of the user profile, but perhaps I misunderstood and the true solution is to chmod the `cache_files` as @lhoestq suggests above - is that correct?\r\n\r\ncc @natolambert @nazneenrajani @edbeeching ",
"Python files are stored in the modules caches, that you can modify by setting `HF_MODULES_CACHE` as well and set appropriate permissions\r\n\r\nThey are in different locations because the `HF_MODULES_CACHE` is added to the python path to be able to import the dataset scripts :)",
"Thanks a lot for the tip @lhoestq ! I didn't know about this extra cache - thanks :)"
] | 2021-03-17T00:20:22 | 2023-03-31T12:17:06 | 2021-05-10T06:45:29 |
NONE
| null | null | null |
Hello,
It seems when a cached file is saved from calling `dataset.map` for preprocessing, it gets the user permissions and none of the user's group permissions. As we share data files across members of our team, this is causing a bit of an issue as we have to continually reset the permission of the files. Do you know any ways around this or a way to correctly set the permissions?
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Cannot load udpos subsets from xtreme dataset using load_dataset()
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"@lhoestq Adding \"_\" to the class labels in the dataset script will fix the issue.\r\n\r\nThe bigger issue IMO is that the data files are in conll format, but the examples are tokens, not sentences.",
"Hi ! Thanks for reporting @adzcodez \r\n\r\n\r\n> @lhoestq Adding \"_\" to the class labels in the dataset script will fix the issue.\r\n> \r\n> The bigger issue IMO is that the data files are in conll format, but the examples are tokens, not sentences.\r\n\r\nYou're right: \"_\" should be added to the list of labels, and the examples must be sequences of tokens, not singles tokens.\r\n",
"@lhoestq Can you please label this issue with the \"good first issue\" label? I'm not sure I'll find time to fix this.\r\n\r\nTo resolve it, the user should:\r\n1. add `\"_\"` to the list of labels\r\n2. transform the udpos subset to the conll format (I think the preprocessing logic can be borrowed from [the original repo](https://github.com/google-research/xtreme/blob/58a76a0d02458c4b3b6a742d3fd4ffaca80ff0de/utils_preprocess.py#L187-L204))\r\n3. update the dummy data\r\n4. update the dataset info\r\n5. [optional] add info about the data fields structure of the udpos subset to the dataset readme",
"I tried fixing this issue, but its working fine in the dev version : \"1.6.2.dev0\"\r\n\r\nI think somebody already fixed it. ",
"Hi,\r\n\r\nafter #2326, the lines with pos tags equal to `\"_\"` are filtered out when generating the dataset, so this fixes the KeyError described above. However, the udpos subset should be in the conll format i.e. it should yield sequences of tokens and not single tokens, so it would be great to see this fixed (feel free to borrow the logic from [here](https://github.com/google-research/xtreme/blob/58a76a0d02458c4b3b6a742d3fd4ffaca80ff0de/utils_preprocess.py#L187-L204) if you decide to work on this). ",
"Closed by #2466."
] | 2021-03-16T09:32:13 | 2021-06-18T11:54:11 | 2021-06-18T11:54:10 |
NONE
| null | null | null |
Hello,
I am trying to load the udpos English subset from xtreme dataset, but this faces an error during loading. I am using datasets v1.4.1, pip install. I have tried with other udpos languages which also fail, though loading a different subset altogether (such as XNLI) has no issue. I have also tried on Colab and faced the same error.
Reprex is:
`from datasets import load_dataset `
`dataset = load_dataset('xtreme', 'udpos.English')`
The error is:
`KeyError: '_'`
The full traceback is:
KeyError Traceback (most recent call last)
<ipython-input-5-7181359ea09d> in <module>
1 from datasets import load_dataset
----> 2 dataset = load_dataset('xtreme', 'udpos.English')
~\Anaconda3\envs\mlenv\lib\site-packages\datasets\load.py in load_dataset(path, name, data_dir, data_files, split, cache_dir, features, download_config, download_mode, ignore_verifications, keep_in_memory, save_infos, script_version, use_auth_token, **config_kwargs)
738
739 # Download and prepare data
--> 740 builder_instance.download_and_prepare(
741 download_config=download_config,
742 download_mode=download_mode,
~\Anaconda3\envs\mlenv\lib\site-packages\datasets\builder.py in download_and_prepare(self, download_config, download_mode, ignore_verifications, try_from_hf_gcs, dl_manager, base_path, use_auth_token, **download_and_prepare_kwargs)
576 logger.warning("HF google storage unreachable. Downloading and preparing it from source")
577 if not downloaded_from_gcs:
--> 578 self._download_and_prepare(
579 dl_manager=dl_manager, verify_infos=verify_infos, **download_and_prepare_kwargs
580 )
~\Anaconda3\envs\mlenv\lib\site-packages\datasets\builder.py in _download_and_prepare(self, dl_manager, verify_infos, **prepare_split_kwargs)
654 try:
655 # Prepare split will record examples associated to the split
--> 656 self._prepare_split(split_generator, **prepare_split_kwargs)
657 except OSError as e:
658 raise OSError(
~\Anaconda3\envs\mlenv\lib\site-packages\datasets\builder.py in _prepare_split(self, split_generator)
977 generator, unit=" examples", total=split_info.num_examples, leave=False, disable=not_verbose
978 ):
--> 979 example = self.info.features.encode_example(record)
980 writer.write(example)
981 finally:
~\Anaconda3\envs\mlenv\lib\site-packages\datasets\features.py in encode_example(self, example)
946 def encode_example(self, example):
947 example = cast_to_python_objects(example)
--> 948 return encode_nested_example(self, example)
949
950 def encode_batch(self, batch):
~\Anaconda3\envs\mlenv\lib\site-packages\datasets\features.py in encode_nested_example(schema, obj)
840 # Nested structures: we allow dict, list/tuples, sequences
841 if isinstance(schema, dict):
--> 842 return {
843 k: encode_nested_example(sub_schema, sub_obj) for k, (sub_schema, sub_obj) in utils.zip_dict(schema, obj)
844 }
~\Anaconda3\envs\mlenv\lib\site-packages\datasets\features.py in <dictcomp>(.0)
841 if isinstance(schema, dict):
842 return {
--> 843 k: encode_nested_example(sub_schema, sub_obj) for k, (sub_schema, sub_obj) in utils.zip_dict(schema, obj)
844 }
845 elif isinstance(schema, (list, tuple)):
~\Anaconda3\envs\mlenv\lib\site-packages\datasets\features.py in encode_nested_example(schema, obj)
868 # ClassLabel will convert from string to int, TranslationVariableLanguages does some checks
869 elif isinstance(schema, (ClassLabel, TranslationVariableLanguages, Value, _ArrayXD)):
--> 870 return schema.encode_example(obj)
871 # Other object should be directly convertible to a native Arrow type (like Translation and Translation)
872 return obj
~\Anaconda3\envs\mlenv\lib\site-packages\datasets\features.py in encode_example(self, example_data)
647 # If a string is given, convert to associated integer
648 if isinstance(example_data, str):
--> 649 example_data = self.str2int(example_data)
650
651 # Allowing -1 to mean no label.
~\Anaconda3\envs\mlenv\lib\site-packages\datasets\features.py in str2int(self, values)
605 if value not in self._str2int:
606 value = value.strip()
--> 607 output.append(self._str2int[str(value)])
608 else:
609 # No names provided, try to integerize
KeyError: '_'
|
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MDU6SXNzdWU4MzI1NzkxNTY=
| 2,059 |
Error while following docs to load the `ted_talks_iwslt` dataset
|
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[
"@skyprince999 as you authored the PR for this dataset, any comments?",
"This has been fixed in #2064 by @mariosasko (thanks again !)\r\n\r\nThe fix is available on the master branch and we'll do a new release very soon :)"
] | 2021-03-16T09:12:19 | 2021-03-16T18:00:31 | 2021-03-16T18:00:07 |
NONE
| null | null | null |
I am currently trying to load the `ted_talks_iwslt` dataset into google colab.
The [docs](https://huggingface.co/datasets/ted_talks_iwslt) mention the following way of doing so.
```python
dataset = load_dataset("ted_talks_iwslt", language_pair=("it", "pl"), year="2014")
```
Executing it results in the error attached below.
```
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
<ipython-input-6-7dcc67154ef9> in <module>()
----> 1 dataset = load_dataset("ted_talks_iwslt", language_pair=("it", "pl"), year="2014")
4 frames
/usr/local/lib/python3.7/dist-packages/datasets/load.py in load_dataset(path, name, data_dir, data_files, split, cache_dir, features, download_config, download_mode, ignore_verifications, keep_in_memory, save_infos, script_version, use_auth_token, **config_kwargs)
730 hash=hash,
731 features=features,
--> 732 **config_kwargs,
733 )
734
/usr/local/lib/python3.7/dist-packages/datasets/builder.py in __init__(self, writer_batch_size, *args, **kwargs)
927
928 def __init__(self, *args, writer_batch_size=None, **kwargs):
--> 929 super(GeneratorBasedBuilder, self).__init__(*args, **kwargs)
930 # Batch size used by the ArrowWriter
931 # It defines the number of samples that are kept in memory before writing them
/usr/local/lib/python3.7/dist-packages/datasets/builder.py in __init__(self, cache_dir, name, hash, features, **config_kwargs)
241 name,
242 custom_features=features,
--> 243 **config_kwargs,
244 )
245
/usr/local/lib/python3.7/dist-packages/datasets/builder.py in _create_builder_config(self, name, custom_features, **config_kwargs)
337 if "version" not in config_kwargs and hasattr(self, "VERSION") and self.VERSION:
338 config_kwargs["version"] = self.VERSION
--> 339 builder_config = self.BUILDER_CONFIG_CLASS(**config_kwargs)
340
341 # otherwise use the config_kwargs to overwrite the attributes
/root/.cache/huggingface/modules/datasets_modules/datasets/ted_talks_iwslt/024d06b1376b361e59245c5878ab8acf9a7576d765f2d0077f61751158e60914/ted_talks_iwslt.py in __init__(self, language_pair, year, **kwargs)
219 description=description,
220 version=datasets.Version("1.1.0", ""),
--> 221 **kwargs,
222 )
223
TypeError: __init__() got multiple values for keyword argument 'version'
```
How to resolve this?
PS: Thanks a lot @huggingface team for creating this great library!
|
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| 2,058 |
Is it possible to convert a `tfds` to HuggingFace `dataset`?
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[
"Hi! You can either save the TF dataset to one of the formats supported by datasets (`parquet`, `csv`, `json`, ...) or pass a generator function to `Dataset.from_generator` that yields its examples."
] | 2021-03-15T20:18:47 | 2023-07-25T16:47:40 | 2023-07-25T16:47:40 |
CONTRIBUTOR
| null | null | null |
I was having some weird bugs with `C4`dataset version of HuggingFace, so I decided to try to download `C4`from `tfds`. I would like to know if it is possible to convert a tfds dataset to HuggingFace dataset format :)
I can also open a new issue reporting the bug I'm receiving with `datasets.load_dataset('c4','en')` in the future if you think that it would be useful.
Thanks!
|
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| 2,056 |
issue with opus100/en-fr dataset
|
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[
"@lhoestq I also deleted the cache and redownload the file and still the same issue, I appreciate any help on this. thanks ",
"Here please find the minimal code to reproduce the issue @lhoestq note this only happens with MT5TokenizerFast\r\n\r\n```\r\nfrom datasets import load_dataset\r\nfrom transformers import MT5TokenizerFast\r\n\r\ndef get_tokenized_dataset(dataset_name, dataset_config_name, tokenizer):\r\n datasets = load_dataset(dataset_name, dataset_config_name, script_version=\"master\")\r\n column_names = datasets[\"train\"].column_names\r\n text_column_name = \"translation\"\r\n def process_dataset(datasets):\r\n def process_function(examples):\r\n lang = \"fr\"\r\n return {\"src_texts\": [example[lang] for example in examples[text_column_name]]}\r\n datasets = datasets.map(\r\n process_function,\r\n batched=True,\r\n num_proc=None,\r\n remove_columns=column_names,\r\n load_from_cache_file=True,\r\n )\r\n return datasets\r\n datasets = process_dataset(datasets)\r\n text_column_name = \"src_texts\"\r\n column_names = [\"src_texts\"]\r\n def tokenize_function(examples):\r\n return tokenizer(examples[text_column_name], return_special_tokens_mask=True)\r\n tokenized_datasets = datasets.map(\r\n tokenize_function,\r\n batched=True,\r\n num_proc=None,\r\n remove_columns=column_names,\r\n load_from_cache_file=True\r\n )\r\n\r\nif __name__ == \"__main__\":\r\n tokenizer_kwargs = {\r\n \"cache_dir\": None,\r\n \"use_fast\": True,\r\n \"revision\": \"main\",\r\n \"use_auth_token\": None\r\n }\r\n tokenizer = MT5TokenizerFast.from_pretrained(\"google/mt5-small\", **tokenizer_kwargs)\r\n get_tokenized_dataset(dataset_name=\"opus100\", dataset_config_name=\"en-fr\", tokenizer=tokenizer)\r\n~ \r\n```",
"as per https://github.com/huggingface/tokenizers/issues/626 this looks like to be the tokenizer bug, I therefore, reported it there https://github.com/huggingface/tokenizers/issues/626 and I am closing this one."
] | 2021-03-15T11:32:42 | 2021-03-16T15:49:00 | 2021-03-16T15:48:59 |
NONE
| null | null | null |
Hi
I am running run_mlm.py code of huggingface repo with opus100/fr-en pair, I am getting this error, note that this error occurs for only this pairs and not the other pairs. Any idea why this is occurring? and how I can solve this?
Thanks a lot @lhoestq for your help in advance.
`
thread '<unnamed>' panicked at 'index out of bounds: the len is 617 but the index is 617', /__w/tokenizers/tokenizers/tokenizers/src/tokenizer/normalizer.rs:382:21
note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace
63%|██████████████████████████████████████████████████████████▊ | 626/1000 [00:27<00:16, 22.69ba/s]
Traceback (most recent call last):
File "run_mlm.py", line 550, in <module>
main()
File "run_mlm.py", line 412, in main
in zip(data_args.dataset_name, data_args.dataset_config_name)]
File "run_mlm.py", line 411, in <listcomp>
logger) for dataset_name, dataset_config_name\
File "/user/dara/dev/codes/seq2seq/data/tokenize_datasets.py", line 96, in get_tokenized_dataset
load_from_cache_file=not data_args.overwrite_cache,
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/datasets/dataset_dict.py", line 448, in map
for k, dataset in self.items()
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/datasets/dataset_dict.py", line 448, in <dictcomp>
for k, dataset in self.items()
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/datasets/arrow_dataset.py", line 1309, in map
update_data=update_data,
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/datasets/arrow_dataset.py", line 204, in wrapper
out: Union["Dataset", "DatasetDict"] = func(self, *args, **kwargs)
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/datasets/fingerprint.py", line 337, in wrapper
out = func(self, *args, **kwargs)
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/datasets/arrow_dataset.py", line 1574, in _map_single
batch, indices, check_same_num_examples=len(self.list_indexes()) > 0, offset=offset
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/datasets/arrow_dataset.py", line 1490, in apply_function_on_filtered_inputs
function(*fn_args, effective_indices, **fn_kwargs) if with_indices else function(*fn_args, **fn_kwargs)
File "/user/dara/dev/codes/seq2seq/data/tokenize_datasets.py", line 89, in tokenize_function
return tokenizer(examples[text_column_name], return_special_tokens_mask=True)
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/transformers/tokenization_utils_base.py", line 2347, in __call__
**kwargs,
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/transformers/tokenization_utils_base.py", line 2532, in batch_encode_plus
**kwargs,
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/transformers/tokenization_utils_fast.py", line 384, in _batch_encode_plus
is_pretokenized=is_split_into_words,
pyo3_runtime.PanicException: index out of bounds: the len is 617 but the index is 617
`
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is there a way to override a dataset object saved with save_to_disk?
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[
"Hi\r\nYou can rename the arrow file and update the name in `state.json`",
"I tried this way, but when there is a mapping process to the dataset, it again uses a random cache name. atm, I am trying to use the following method by setting an exact cache file,\r\n\r\n```\r\n dataset_with_embedding =csv_dataset.map(\r\n partial(self.embed, ctx_encoder=ctx_encoder, ctx_tokenizer=self.context_tokenizer),\r\n batched=True,\r\n batch_size=1,\r\n features=new_features,\r\n cache_file_name=cache_arrow_path,\r\n load_from_cache_file=False\r\n )\r\n```\r\nSo here we set a cache_file_name , after this it uses the same file name when saving again and again. ",
"I'm not sure I understand your issue, can you elaborate ?\r\n\r\n`cache_file_name` is indeed an argument you can set to specify the cache file that will be used for the processed dataset. By default the file is named with something like `cache-<fingerprint>.arrow` where the fingerprint is a hash.",
"Let's say I am updating a set of embedding in a dataset that is around 40GB inside a training loop every 500 steps (Ex: calculating the embeddings in updated ctx_encoder in RAG and saving it to the passage path). So when we use **dataset_object.save_to_disk('passage_path_directory')** it will save the new dataset object every time with a random file name, especially when we do some transformations to dataset objects such as map or shards. This way, we keep collecting unwanted files that will eventually eat up all the disk space. \r\n\r\nBut if we can save the dataset object every time by a single name like **data_shard_1.arrow**, it will automatically remove the previous file and save the new one in the same directory. I found the above-mentioned code snippet useful to complete this task. \r\n\r\nIs this clear?"
] | 2021-03-15T10:50:53 | 2021-03-22T04:06:17 | 2021-03-22T04:06:17 |
NONE
| null | null | null |
At the moment when I use save_to_disk, it uses the arbitrary name for the arrow file. Is there a way to override such an object?
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| 2,054 |
Could not find file for ZEST dataset
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[
"The zest dataset url was changed (allenai/zest#3) and #2057 should resolve this.",
"This has been fixed in #2057 by @matt-peters (thanks again !)\r\n\r\nThe fix is available on the master branch and we'll do a new release very soon :)",
"Thanks @lhoestq and @matt-peters ",
"I am closing this issue since its fixed!"
] | 2021-03-15T09:11:58 | 2021-05-03T09:30:24 | 2021-05-03T09:30:24 |
CONTRIBUTOR
| null | null | null |
I am trying to use zest dataset from Allen AI using below code in colab,
```
!pip install -q datasets
from datasets import load_dataset
dataset = load_dataset("zest")
```
I am getting the following error,
```
Using custom data configuration default
Downloading and preparing dataset zest/default (download: 5.53 MiB, generated: 19.96 MiB, post-processed: Unknown size, total: 25.48 MiB) to /root/.cache/huggingface/datasets/zest/default/0.0.0/1f7a230fbfc964d979bbca0f0130fbab3259fce547ee758ad8aa4f9c9bec6cca...
---------------------------------------------------------------------------
FileNotFoundError Traceback (most recent call last)
<ipython-input-6-18dbbc1a4b8a> in <module>()
1 from datasets import load_dataset
2
----> 3 dataset = load_dataset("zest")
9 frames
/usr/local/lib/python3.7/dist-packages/datasets/utils/file_utils.py in get_from_cache(url, cache_dir, force_download, proxies, etag_timeout, resume_download, user_agent, local_files_only, use_etag, max_retries, use_auth_token)
612 )
613 elif response is not None and response.status_code == 404:
--> 614 raise FileNotFoundError("Couldn't find file at {}".format(url))
615 _raise_if_offline_mode_is_enabled(f"Tried to reach {url}")
616 raise ConnectionError("Couldn't reach {}".format(url))
FileNotFoundError: Couldn't find file at https://ai2-datasets.s3-us-west-2.amazonaws.com/zest/zest.zip
```
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| 2,052 |
Timit_asr dataset repeats examples
|
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[
"Hi,\r\n\r\nthis was fixed by #1995, so you can wait for the next release or install the package directly from the master branch with the following command: \r\n```bash\r\npip install git+https://github.com/huggingface/datasets\r\n```",
"Ty!"
] | 2021-03-14T11:43:43 | 2021-03-15T10:37:16 | 2021-03-15T10:37:16 |
NONE
| null | null | null |
Summary
When loading timit_asr dataset on datasets 1.4+, every row in the dataset is the same
Steps to reproduce
As an example, on this code there is the text from the training part:
Code snippet:
```
from datasets import load_dataset, load_metric
timit = load_dataset("timit_asr")
timit['train']['text']
#['Would such an act of refusal be useful?',
# 'Would such an act of refusal be useful?',
# 'Would such an act of refusal be useful?',
# 'Would such an act of refusal be useful?',
# 'Would such an act of refusal be useful?',
# 'Would such an act of refusal be useful?',
```
The same behavior happens for other columns
Expected behavior:
Different info on the actual timit_asr dataset
Actual behavior:
When loading timit_asr dataset on datasets 1.4+, every row in the dataset is the same. I've checked datasets 1.3 and the rows are different
Debug info
Streamlit version: (get it with $ streamlit version)
Python version: Python 3.6.12
Using Conda? PipEnv? PyEnv? Pex? Using pip
OS version: Centos-release-7-9.2009.1.el7.centos.x86_64
Additional information
You can check the same behavior on https://huggingface.co/datasets/viewer/?dataset=timit_asr
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| 2,050 |
Build custom dataset to fine-tune Wav2Vec2
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[
"@lhoestq - We could simply use the \"general\" json dataset for this no? ",
"Sure you can use the json loader\r\n```python\r\ndata_files = {\"train\": \"path/to/your/train_data.json\", \"test\": \"path/to/your/test_data.json\"}\r\ntrain_dataset = load_dataset(\"json\", data_files=data_files, split=\"train\")\r\ntest_dataset = load_dataset(\"json\", data_files=data_files, split=\"test\")\r\n```\r\n\r\nYou just need to make sure that the data contain the paths to the audio files.\r\nIf not, feel free to use `.map()` to add them.",
"Many thanks! that was what I was looking for. "
] | 2021-03-13T22:01:10 | 2021-03-15T09:27:28 | 2021-03-15T09:27:28 |
NONE
| null | null | null |
Thank you for your recent tutorial on how to finetune Wav2Vec2 on a custom dataset. The example you gave here (https://huggingface.co/blog/fine-tune-xlsr-wav2vec2) was on the CommonVoice dataset. However, what if I want to load my own dataset? I have a manifest (transcript and their audio files) in a JSON file.
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github is not always available - probably need a back up
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[] | 2021-03-13T18:03:32 | 2022-04-01T15:27:10 | 2022-04-01T15:27:10 |
CONTRIBUTOR
| null | null | null |
Yesterday morning github wasn't working:
```
:/tmp$ wget https://raw.githubusercontent.com/huggingface/datasets/1.4.1/metrics/sacrebleu/sacrebleu.py--2021-03-12 18:35:59-- https://raw.githubusercontent.com/huggingface/datasets/1.4.1/metrics/sacrebleu/sacrebleu.py
Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.109.133, ...
Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
HTTP request sent, awaiting response... 500 Internal Server Error
2021-03-12 18:36:11 ERROR 500: Internal Server Error.
```
Suggestion: have a failover system and replicate the data on another system and reach there if gh isn't reachable? perhaps gh can be a master and the replicate a slave - so there is only one true source.
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add_faisis_index gets very slow when doing it interatively
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[
"I think faiss automatically sets the number of threads to use to build the index.\r\nCan you check how many CPU cores are being used when you build the index in `use_own_knowleldge_dataset` as compared to this script ? Are there other programs running (maybe for rank>0) ?",
"Hi,\r\n I am running the add_faiss_index during the training process of the RAG from the master process (rank 0). But at the exact moment, I do not run any other process since I do it in every 5000 training steps. \r\n \r\n I think what you say is correct. It depends on the number of CPU cores. I did an experiment to compare the time taken to finish the add_faiss_index process on use_own_knowleldge_dataset.py vs the training loop thing. The training loop thing takes 40 mins more. It might be natural right? \r\n \r\n \r\n at the moment it uses around 40 cores of a 96 core machine (I am fine-tuning the entire process). ",
"Can you try to set the number of threads manually ?\r\nIf you set the same number of threads for both the `use_own_knowledge_dataset.py` and RAG training, it should take the same amount of time.\r\nYou can see how to set the number of thread in the faiss wiki: https://github.com/facebookresearch/faiss/wiki/Threads-and-asynchronous-calls",
"Ok, I will report the details too soon. I am the first one on the list and currently add_index being computed for the 3rd time in the loop. Actually seems like the time is taken to complete each interaction is the same, but around 1 hour more compared to running it without the training loop. A the moment this takes 5hrs and 30 mins. If there is any way to faster the process, an end-to-end rag will be perfect. So I will also try out with different thread numbers too. \r\n\r\n\r\n",
"@lhoestq on a different note, I read about using Faiss-GPU, but the documentation says we should use it when the dataset has the ability to fit into the GPU memory. Although this might work, in the long-term this is not that practical for me.\r\n\r\nhttps://github.com/matsui528/faiss_tips",
"@lhoestq \r\n\r\nHi, I executed the **use_own_dataset.py** script independently and ask a few of my friends to run their programs in the HPC machine at the same time. \r\n\r\n Once there are so many other processes are running the add_index function gets slows down naturally. So basically the speed of the add_index depends entirely on the number of CPU processes. Then I set the number of threads as you have mentioned and got actually the same time for RAG training and independat running. So you are correct! :) \r\n\r\n \r\n Then I added this [issue in Faiss repostiary](https://github.com/facebookresearch/faiss/issues/1767). I got an answer saying our current **IndexHNSWFlat** can get slow for 30 million vectors and it would be better to use alternatives. What do you think?",
"It's a matter of tradeoffs.\r\nHSNW is fast at query time but takes some time to build.\r\nA flat index is flat to build but is \"slow\" at query time.\r\nAn IVF index is probably a good choice for you: fast building and fast queries (but still slower queries than HSNW).\r\n\r\nNote that for an IVF index you would need to have an `nprobe` parameter (number of cells to visit for one query, there are `nlist` in total) that is not too small in order to have good retrieval accuracy, but not too big otherwise the queries will take too much time. From the faiss documentation:\r\n> The nprobe parameter is always a way of adjusting the tradeoff between speed and accuracy of the result. Setting nprobe = nlist gives the same result as the brute-force search (but slower).\r\n\r\nFrom my experience with indexes on DPR embeddings, setting nprobe around 1/4 of nlist gives really good retrieval accuracy and there's no need to have a value higher than that (or you would need to brute-force in order to see a difference).",
"@lhoestq \r\n\r\nThanks a lot for sharing all this prior knowledge. \r\n\r\nJust asking what would be a good nlist of parameters for 30 million embeddings?",
"When IVF is used alone, nlist should be between `4*sqrt(n)` and `16*sqrt(n)`.\r\nFor more details take a look at [this section of the Faiss wiki](https://github.com/facebookresearch/faiss/wiki/Guidelines-to-choose-an-index#how-big-is-the-dataset)",
"Thanks a lot. I was lost with calling the index from class and using faiss_index_factory. ",
"@lhoestq Thanks a lot for the help you have given to solve this issue. As per my experiments, IVF index suits well for my case and it is a lot faster. The use of this can make the entire RAG end-to-end trainable lot faster. So I will close this issue. Will do the final PR soon. "
] | 2021-03-12T20:27:18 | 2021-03-24T22:29:11 | 2021-03-24T22:29:11 |
NONE
| null | null | null |
As the below code suggests, I want to run add_faisis_index in every nth interaction from the training loop. I have 7.2 million documents. Usually, it takes 2.5 hours (if I run an as a separate process similar to the script given in rag/use_own_knowleldge_dataset.py). Now, this takes usually 5hrs. Is this normal? Any way to make this process faster?
@lhoestq
```
def training_step(self, batch, batch_idx) -> Dict:
if (not batch_idx==0) and (batch_idx%5==0):
print("******************************************************")
ctx_encoder=self.trainer.model.module.module.model.rag.ctx_encoder
model_copy =type(ctx_encoder)(self.config_dpr) # get a new instance #this will be load in the CPU
model_copy.load_state_dict(ctx_encoder.state_dict()) # copy weights and stuff
list_of_gpus = ['cuda:2','cuda:3']
c_dir='/custom/cache/dir'
kb_dataset = load_dataset("csv", data_files=[self.custom_config.csv_path], split="train", delimiter="\t", column_names=["title", "text"],cache_dir=c_dir)
print(kb_dataset)
n=len(list_of_gpus) #nunber of dedicated GPUs
kb_list=[kb_dataset.shard(n, i, contiguous=True) for i in range(n)]
#kb_dataset.save_to_disk('/hpc/gsir059/MY-Test/RAY/transformers/examples/research_projects/rag/haha-dir')
print(self.trainer.global_rank)
dataset_shards = self.re_encode_kb(model_copy.to(device=list_of_gpus[self.trainer.global_rank]),kb_list[self.trainer.global_rank])
output = [None for _ in list_of_gpus]
#self.trainer.accelerator_connector.accelerator.barrier("embedding_process")
dist.all_gather_object(output, dataset_shards)
#This creation and re-initlaization of the new index
if (self.trainer.global_rank==0): #saving will be done in the main process
combined_dataset = concatenate_datasets(output)
passages_path =self.config.passages_path
logger.info("saving the dataset with ")
#combined_dataset.save_to_disk('/hpc/gsir059/MY-Test/RAY/transformers/examples/research_projects/rag/MY-Passage')
combined_dataset.save_to_disk(passages_path)
logger.info("Add faiss index to the dataset that consist of embeddings")
embedding_dataset=combined_dataset
index = faiss.IndexHNSWFlat(768, 128, faiss.METRIC_INNER_PRODUCT)
embedding_dataset.add_faiss_index("embeddings", custom_index=index)
embedding_dataset.get_index("embeddings").save(self.config.index_path)
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MDU6SXNzdWU4MzAxNjkzODc=
| 2,040 |
ValueError: datasets' indices [1] come from memory and datasets' indices [0] come from disk
|
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[
"Hi ! To help me understand the situation, can you print the values of `load_from_disk(PATH_DATA_CLS_A)['train']._indices_data_files` and `load_from_disk(PATH_DATA_CLS_B)['train']._indices_data_files` ?\r\nThey should both have a path to an arrow file\r\n\r\nAlso note that from #2025 concatenating datasets will no longer have such restrictions.",
"Sure, thanks for the fast reply!\r\n\r\nFor dataset A: `[{'filename': 'drive/MyDrive/data_target_task/dataset_a/train/cache-4797266bf4db1eb7.arrow'}]`\r\nFor dataset B: `[]`\r\n\r\nNo clue why for B it returns nothing. `PATH_DATA_CLS_B` is exactly the same in `save_to_disk` and `load_from_disk`... Also I can verify that the folder physically exists under 'drive/MyDrive/data_target_task/dataset_b/'",
"In the next release you'll be able to concatenate any kinds of dataset (either from memory or from disk).\r\n\r\nFor now I'd suggest you to flatten the indices of the A and B datasets. This will remove the indices mapping and you will be able to concatenate them. You can flatten the indices with\r\n```python\r\ndataset = dataset.flatten_indices()\r\n```",
"Indeed this works. Not the most elegant solution, but it does the trick. Thanks a lot! "
] | 2021-03-12T14:27:00 | 2021-08-04T18:00:43 | 2021-08-04T18:00:43 |
NONE
| null | null | null |
Hi there,
I am trying to concat two datasets that I've previously saved to disk via `save_to_disk()` like so (note that both are saved as `DataDict`, `PATH_DATA_CLS_*` are `Path`-objects):
```python
concatenate_datasets([load_from_disk(PATH_DATA_CLS_A)['train'], load_from_disk(PATH_DATA_CLS_B)['train']])
```
Yielding the following error:
```python
ValueError: Datasets' indices should ALL come from memory, or should ALL come from disk.
However datasets' indices [1] come from memory and datasets' indices [0] come from disk.
```
Been trying to solve this for quite some time now. Both `DataDict` have been created by reading in a `csv` via `load_dataset` and subsequently processed using the various `datasets` methods (i.e. filter, map, remove col, rename col). Can't figure out tho...
`load_from_disk(PATH_DATA_CLS_A)['train']` yields:
```python
Dataset({
features: ['labels', 'text'],
num_rows: 785
})
```
`load_from_disk(PATH_DATA_CLS_B)['train']` yields:
```python
Dataset({
features: ['labels', 'text'],
num_rows: 3341
})
```
|
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MDU6SXNzdWU4MzAwMzY4NzU=
| 2,038 |
outdated dataset_infos.json might fail verifications
|
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[
"Hi ! Thanks for reporting.\r\n\r\nTo update the dataset_infos.json you can run:\r\n```\r\ndatasets-cli test ./datasets/doc2dial --all_configs --save_infos --ignore_verifications\r\n```",
"Fixed by #2041, thanks again @songfeng !"
] | 2021-03-12T11:41:54 | 2021-03-16T16:27:40 | 2021-03-16T16:27:40 |
CONTRIBUTOR
| null | null | null |
The [doc2dial/dataset_infos.json](https://github.com/huggingface/datasets/blob/master/datasets/doc2dial/dataset_infos.json) is outdated. It would fail data_loader when verifying download checksum etc..
Could you please update this file or point me how to update this file?
Thank you.
|
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| 2,036 |
Cannot load wikitext
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[
"Solved!"
] | 2021-03-12T09:09:39 | 2021-03-15T08:45:02 | 2021-03-15T08:44:44 |
NONE
| null | null | null |
when I execute these codes
```
>>> from datasets import load_dataset
>>> test_dataset = load_dataset("wikitext")
```
I got an error,any help?
```
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/xxx/anaconda3/envs/transformer/lib/python3.7/site-packages/datasets/load.py", line 589, in load_dataset
path, script_version=script_version, download_config=download_config, download_mode=download_mode, dataset=True
File "/home/xxx/anaconda3/envs/transformer/lib/python3.7/site-packages/datasets/load.py", line 267, in prepare_module
local_path = cached_path(file_path, download_config=download_config)
File "/home/xxx/anaconda3/envs/transformer/lib/python3.7/site-packages/datasets/utils/file_utils.py", line 308, in cached_path
use_etag=download_config.use_etag,
File "/home/xxx/anaconda3/envs/transformer/lib/python3.7/site-packages/datasets/utils/file_utils.py", line 487, in get_from_cache
raise ConnectionError("Couldn't reach {}".format(url))
ConnectionError: Couldn't reach https://raw.githubusercontent.com/huggingface/datasets/1.1.3/datasets/wikitext/wikitext.py
```
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wiki40b/wikipedia for almost all languages cannot be downloaded
|
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[
"Dear @lhoestq for wikipedia dataset I also get the same error, I greatly appreciate if you could have a look into this dataset as well. Below please find the command to reproduce the error:\r\n\r\n```\r\ndataset = load_dataset(\"wikipedia\", \"20200501.bg\")\r\nprint(dataset)\r\n```\r\n\r\nYour library is my only chance to be able training the models at scale and I am grateful for your help.\r\n\r\n",
"Hi @dorost1234,\r\nTry installing this library first, `pip install 'apache-beam[gcp]' --use-feature=2020-resolver` followed by loading dataset like this using beam runner.\r\n\r\n`dataset = load_dataset(\"wiki40b\", \"cs\", beam_runner='DirectRunner')`\r\n\r\n I also read in error stack trace that:\r\n\r\n> Trying to generate a dataset using Apache Beam, yet no Beam Runner or PipelineOptions() has been provided in `load_dataset` or in the builder arguments. For big datasets it has to run on large-scale data processing tools like Dataflow, Spark, etc.\r\n\r\nWorked perfectly fine after this (Ignore these warnings)\r\n\r\n\r\n\r\n",
"For wikipedia dataset, looks like the files it's looking for are no longer available. For `bg`, I checked [here](https://dumps.wikimedia.org/bgwiki/). For this I think `dataset_infos.json` for this dataset has to made again? You'll have to load this dataset also using beam runner.\r\n\r\n",
"Hello @dorost1234,\r\n\r\nIndeed, Wikipedia datasets need a lot of preprocessing and this is done using Apache Beam. That is the reason why it is required that you install Apache Beam in order to preform this preprocessing.\r\n\r\nFor some specific default parameters (English Wikipedia), Hugging Face has already preprocessed the dataset for you (and it is stored in the cloud). That is the reason why you do not get the error for English: the preprocessing is already done by HF and you just get the preprocessed dataset; Apache Beam is not required in that case.",
"Hi\nI really appreciate if huggingface can kindly provide preprocessed\ndatasets, processing these datasets require sufficiently large resources\nand I do not have unfortunately access to, and perhaps many others too.\nthanks\n\nOn Fri, Mar 12, 2021 at 9:04 AM Albert Villanova del Moral <\n***@***.***> wrote:\n\n> Hello @dorost1234 <https://github.com/dorost1234>,\n>\n> Indeed, Wikipedia datasets need a lot of preprocessing and this is done\n> using Apache Beam. That is the reason why it is required that you install\n> Apache Beam in order to preform this preprocessing.\n>\n> For some specific default parameters (English Wikipedia), Hugging Face has\n> already preprocessed the dataset for you (and it is stored in the cloud).\n> That is the reason why you do not get the error for English: the\n> preprocessing is already done by HF and you just get the preprocessed\n> dataset; Apache Beam is not required in that case.\n>\n> —\n> You are receiving this because you were mentioned.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/huggingface/datasets/issues/2035#issuecomment-797310899>,\n> or unsubscribe\n> <https://github.com/notifications/unsubscribe-auth/AS37NMXACFQZAGMK4VGXRETTDHDI3ANCNFSM4ZA5R2UA>\n> .\n>\n",
"Hi everyone\r\nthanks for the helpful pointers, I did it as @bhavitvyamalik suggested, for me this freezes on this command for several hours, \r\n\r\n`Downloading and preparing dataset wiki40b/cs (download: Unknown size, generated: Unknown size, post-processed: Unknown size, total: Unknown size) to /users/dara/cache/datasets/wiki40b/cs/1.1.0/063778187363ffb294896eaa010fc254b42b73e31117c71573a953b0b0bf010f...\r\n`\r\n\r\nDo you know how long this takes? Any specific requirements the machine should have? like very large memory or so? @lhoestq \r\n\r\nthanks \r\n\r\n\r\n",
"HI @dorost1234, \r\nThe dataset size is 631.84 MiB so depending on your internet speed it'll take some time. You can monitor your internet speed meanwhile to see if it's downloading the dataset or not (use `nload` if you're using linux/mac to monitor the same). In my case it took around 3-4 mins. Since they haven't used `download_and_extract` here that's why there's no download progress bar.",
"Hi\r\nthanks, my internet speed should be good, but this really freezes for me, this is how I try to get this dataset:\r\n\r\n`from datasets import load_dataset\r\ndataset = load_dataset(\"wiki40b\", \"cs\", beam_runner='DirectRunner')`\r\n\r\nthe output I see if different also from what you see after writing this command:\r\n\r\n`Downloading and preparing dataset wiki40b/cs (download: Unknown size, generated: Unknown size, post-processed: Unknown size, total: Unknown size) to /users/dara/cache/datasets/wiki40b/cs/1.1.0/063778187363ffb294896eaa010fc254b42b73e31117c71573a953b0b0bf010f...`\r\n\r\ndo you have any idea why it might get freezed? anything I am missing @lhoestq @bhavitvyamalik. Do I need maybe to set anything special for apache-beam? \r\n\r\nthanks a lot \r\n\r\nOn Tue, Mar 16, 2021 at 9:03 AM Bhavitvya Malik ***@***.***>\r\nwrote:\r\n\r\n> HI @dorost1234 <https://github.com/dorost1234>,\r\n> The dataset size is 631.84 MiB so depending on your internet speed it'll\r\n> take some time. You can monitor your internet speed meanwhile to see if\r\n> it's downloading the dataset or not (use nload if you're using linux/mac\r\n> to monitor the same). In my case it took around 3-4 mins. Since they\r\n> haven't used download_and_extract here that's why there's no download\r\n> progress bar.\r\n>\r\n> —\r\n> You are receiving this because you were mentioned.\r\n> Reply to this email directly, view it on GitHub\r\n> <https://github.com/huggingface/datasets/issues/2035#issuecomment-800044303>,\r\n> or unsubscribe\r\n> <https://github.com/notifications/unsubscribe-auth/AS37NMQIHNNLM2LGG6QKZ73TD4GDJANCNFSM4ZA5R2UA>\r\n> .\r\n>\r\n",
"I tried this on another machine (followed the same procedure I've mentioned above). This is what it shows (during the freeze period) for me:\r\n```\r\n>>> dataset = load_dataset(\"wiki40b\", \"cs\", beam_runner='DirectRunner')\r\nDownloading: 5.26kB [00:00, 1.23MB/s] \r\nDownloading: 1.40kB [00:00, 327kB/s] \r\nDownloading and preparing dataset wiki40b/cs (download: Unknown size, generated: Unknown size, post-processed: Unknown size, total: Unknown size) to /home/bhavitvya/.cache/huggingface/datasets/wiki40b/cs/1.1.0/063778187363ffb294896eaa010fc254b42b73e31117c71573a953b0b0bf010f...\r\nWARNING:apache_beam.internal.gcp.auth:Unable to find default credentials to use: The Application Default Credentials are not available. They are available if running in Google Compute Engine. Otherwise, the environment variable GOOGLE_APPLICATION_CREDENTIALS must be defined pointing to a file defining the credentials. See https://developers.google.com/accounts/docs/application-default-credentials for more information.\r\nConnecting anonymously.\r\nWARNING:apache_beam.io.tfrecordio:Couldn't find python-snappy so the implementation of _TFRecordUtil._masked_crc32c is not as fast as it could be.\r\n```\r\nAfter around 10 minutes, here's the loading of dataset:\r\n```\r\n100%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 1/1 [00:16<00:00, 16.42s/sources]\r\n100%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 1/1 [00:00<00:00, 1.12sources/s]\r\n100%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 1/1 [00:00<00:00, 1.14sources/s]\r\nDataset wiki40b downloaded and prepared to /home/bhavitvya/.cache/huggingface/datasets/wiki40b/cs/1.1.0/063778187363ffb294896eaa010fc254b42b73e31117c71573a953b0b0bf010f. Subsequent calls will reuse this data.\r\n```",
"Hi\r\nI honestly also now tried on another machine and nothing shows up after\r\nhours of waiting. Are you sure you have not set any specific setting? maybe\r\ngoogle cloud which seems it is used here, needs some credential setting?\r\nthanks for any suggestions on this\r\n\r\nOn Tue, Mar 16, 2021 at 10:02 AM Bhavitvya Malik ***@***.***>\r\nwrote:\r\n\r\n> I tried this on another machine (followed the same procedure I've\r\n> mentioned above). This is what it shows (during the freeze period) for me:\r\n>\r\n> >>> dataset = load_dataset(\"wiki40b\", \"cs\", beam_runner='DirectRunner')\r\n> Downloading: 5.26kB [00:00, 1.23MB/s]\r\n> Downloading: 1.40kB [00:00, 327kB/s]\r\n> Downloading and preparing dataset wiki40b/cs (download: Unknown size, generated: Unknown size, post-processed: Unknown size, total: Unknown size) to /home/bhavitvya/.cache/huggingface/datasets/wiki40b/cs/1.1.0/063778187363ffb294896eaa010fc254b42b73e31117c71573a953b0b0bf010f...\r\n> WARNING:apache_beam.internal.gcp.auth:Unable to find default credentials to use: The Application Default Credentials are not available. They are available if running in Google Compute Engine. Otherwise, the environment variable GOOGLE_APPLICATION_CREDENTIALS must be defined pointing to a file defining the credentials. See https://developers.google.com/accounts/docs/application-default-credentials for more information.\r\n> Connecting anonymously.\r\n> WARNING:apache_beam.io.tfrecordio:Couldn't find python-snappy so the implementation of _TFRecordUtil._masked_crc32c is not as fast as it could be.\r\n>\r\n> After around 10 minutes, here's the loading of dataset:\r\n>\r\n> 100%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 1/1 [00:16<00:00, 16.42s/sources]\r\n> 100%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 1/1 [00:00<00:00, 1.12sources/s]\r\n> 100%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 1/1 [00:00<00:00, 1.14sources/s]\r\n> Dataset wiki40b downloaded and prepared to /home/bhavitvya/.cache/huggingface/datasets/wiki40b/cs/1.1.0/063778187363ffb294896eaa010fc254b42b73e31117c71573a953b0b0bf010f. Subsequent calls will reuse this data.\r\n>\r\n> —\r\n> You are receiving this because you were mentioned.\r\n> Reply to this email directly, view it on GitHub\r\n> <https://github.com/huggingface/datasets/issues/2035#issuecomment-800081772>,\r\n> or unsubscribe\r\n> <https://github.com/notifications/unsubscribe-auth/AS37NMX6A2ZTRZUIIZVFRCDTD4NC3ANCNFSM4ZA5R2UA>\r\n> .\r\n>\r\n",
"Closing as `apache-beam`/`tensorflow_datasets` are no longer needed to load `wikipedia`/`wiki40b`."
] | 2021-03-11T19:54:54 | 2024-03-15T16:09:49 | 2024-03-15T16:09:48 |
NONE
| null | null | null |
Hi
I am trying to download the data as below:
```
from datasets import load_dataset
dataset = load_dataset("wiki40b", "cs")
print(dataset)
```
I am getting this error. @lhoestq I will be grateful if you could assist me with this error. For almost all languages except english I am getting this error.
I really need majority of languages in this dataset to be able to train my models for a deadline and your great scalable super well-written library is my only hope to train the models at scale while being low on resources.
thank you very much.
```
(fast) dara@vgne046:/user/dara/dev/codes/seq2seq$ python test_data.py
Downloading and preparing dataset wiki40b/cs (download: Unknown size, generated: Unknown size, post-processed: Unknown size, total: Unknown size) to temp/dara/cache_home_2/datasets/wiki40b/cs/1.1.0/063778187363ffb294896eaa010fc254b42b73e31117c71573a953b0b0bf010f...
Traceback (most recent call last):
File "test_data.py", line 3, in <module>
dataset = load_dataset("wiki40b", "cs")
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/datasets/load.py", line 746, in load_dataset
use_auth_token=use_auth_token,
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/datasets/builder.py", line 579, in download_and_prepare
dl_manager=dl_manager, verify_infos=verify_infos, **download_and_prepare_kwargs
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/datasets/builder.py", line 1105, in _download_and_prepare
import apache_beam as beam
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/apache_beam-2.28.0-py3.7-linux-x86_64.egg/apache_beam/__init__.py", line 96, in <module>
from apache_beam import io
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/apache_beam-2.28.0-py3.7-linux-x86_64.egg/apache_beam/io/__init__.py", line 23, in <module>
from apache_beam.io.avroio import *
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/apache_beam-2.28.0-py3.7-linux-x86_64.egg/apache_beam/io/avroio.py", line 55, in <module>
import avro
File "<frozen importlib._bootstrap>", line 983, in _find_and_load
File "<frozen importlib._bootstrap>", line 967, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 668, in _load_unlocked
File "<frozen importlib._bootstrap>", line 638, in _load_backward_compatible
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/avro_python3-1.9.2.1-py3.7.egg/avro/__init__.py", line 34, in <module>
File "/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/avro_python3-1.9.2.1-py3.7.egg/avro/__init__.py", line 30, in LoadResource
NotADirectoryError: [Errno 20] Not a directory: '/user/dara/libs/anaconda3/envs/fast/lib/python3.7/site-packages/avro_python3-1.9.2.1-py3.7.egg/avro/VERSION.txt'
```
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Use Arrow filtering instead of writing a new arrow file for Dataset.filter
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"Actually table.filter returns a new table in memory, which can fill users RAM.\r\n\r\nTherefore it's not a good solution if we want to keep supporting bigger than RAM datastes"
] | 2021-03-11T15:18:50 | 2024-01-19T13:26:32 | 2024-01-19T13:26:32 |
MEMBER
| null | null | null |
Currently the filter method reads the dataset batch by batch to write a new, filtered, arrow file on disk. Therefore all the reading + writing can take some time.
Using a mask directly on the arrow table doesn't do any read or write operation therefore it's significantly quicker.
I think there are two cases:
- if the dataset doesn't have an indices mapping, then one can simply use the arrow filtering on the main arrow table `dataset._data.filter(...)`
- if the dataset an indices mapping, then the mask should be applied on the indices mapping table `dataset._indices.filter(...)`
The indices mapping is used to map between the idx at `dataset[idx]` in `__getitem__` and the idx in the actual arrow table.
The new filter method should therefore be faster, and allow users to pass either a filtering function (that returns a boolean given an example), or directly a mask.
Feel free to discuss this idea in this thread :)
One additional note: the refactor at #2025 would make all the pickle-related stuff work directly with the arrow filtering, so that we only need to change the Dataset.filter method without having to deal with pickle.
cc @theo-m @gchhablani
related issues: #1796 #1949
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wikipedia.py generator that extracts XML doesn't release memory
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[
"Hi @miyamonz \r\nThanks for investigating this issue, good job !\r\nIt would be awesome to integrate your fix in the library, could you open a pull request ?",
"OK! I'll send it later."
] | 2021-03-11T12:51:24 | 2021-03-22T08:33:52 | 2021-03-22T08:33:52 |
CONTRIBUTOR
| null | null | null |
I tried downloading Japanese wikipedia, but it always failed because of out of memory maybe.
I found that the generator function that extracts XML data in wikipedia.py doesn't release memory in the loop.
https://github.com/huggingface/datasets/blob/13a5b7db992ad5cf77895e4c0f76595314390418/datasets/wikipedia/wikipedia.py#L464-L502
`root.clear()` intend to clear memory, but it doesn't.
https://github.com/huggingface/datasets/blob/13a5b7db992ad5cf77895e4c0f76595314390418/datasets/wikipedia/wikipedia.py#L490
https://github.com/huggingface/datasets/blob/13a5b7db992ad5cf77895e4c0f76595314390418/datasets/wikipedia/wikipedia.py#L494
I replaced them with `elem.clear()`, then it seems to work correctly.
here is the notebook to reproduce it.
https://gist.github.com/miyamonz/dc06117302b6e85fa51cbf46dde6bb51#file-xtract_content-ipynb
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Loading a faiss index KeyError
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[
"In your code `dataset2` doesn't contain the \"embeddings\" column, since it is created from the pandas DataFrame with columns \"text\" and \"label\".\r\n\r\nTherefore when you call `dataset2[embeddings_name]`, you get a `KeyError`.\r\n\r\nIf you want the \"embeddings\" column back, you can create `dataset2` with\r\n```python\r\ndataset2 = load_from_disk(dataset_filename)\r\n```\r\nwhere `dataset_filename` is the place where you saved you dataset with the embeddings in the first place.",
"Ok in that case HF should fix their misleading example at https://huggingface.co/docs/datasets/faiss_and_ea.html#adding-a-faiss-index \r\n\r\nI copy-pasted it here.\r\n\r\n> When you are done with your queries you can save your index on disk:\r\n> \r\n> ```python\r\n> ds_with_embeddings.save_faiss_index('embeddings', 'my_index.faiss')\r\n> ```\r\n> Then reload it later:\r\n> \r\n> ```python\r\n> ds = load_dataset('crime_and_punish', split='train[:100]')\r\n> ds.load_faiss_index('embeddings', 'my_index.faiss')\r\n> ```",
"Hi !\r\n\r\nThe code of the example is valid.\r\nAn index is a search engine, it's not considered a column of a dataset.\r\nWhen you do `ds.load_faiss_index(\"embeddings\", 'my_index.faiss')`, it attaches an index named \"embeddings\" to the dataset but it doesn't re-add the \"embeddings\" column. You can list the indexes of a dataset by using `ds.list_indexes()`.\r\n\r\nIf I understand correctly by reading this example you thought that it was re-adding the \"embeddings\" column.\r\nThis looks misleading indeed, and we should add a note to make it more explicit that it doesn't store the column that was used to build the index.\r\n\r\nFeel free to open a PR to suggest an improvement on the documentation if you want to contribute :)",
"> If I understand correctly by reading this example you thought that it was re-adding the \"embeddings\" column.\r\nYes. I was trying to use the dataset in RAG and it complained that the dataset didn't have the right columns. No problems when loading the dataset with `load_from_disk` and then doing `load_faiss_index`\r\n\r\nWhat I learned was\r\n1. column and index are different\r\n2. loading the index does not create a column\r\n3. the column is not needed to be able to use the index\r\n4. RAG needs both the embeddings column and the index\r\n\r\nIf I can come up with a way to articulate this in the right spot in the docs, I'll open a PR"
] | 2021-03-11T12:16:13 | 2021-03-12T00:21:09 | 2021-03-12T00:21:09 |
NONE
| null | null | null |
I've recently been testing out RAG and DPR embeddings, and I've run into an issue that is not apparent in the documentation.
The basic steps are:
1. Create a dataset (dataset1)
2. Create an embeddings column using DPR
3. Add a faiss index to the dataset
4. Save faiss index to a file
5. Create a new dataset (dataset2) with the same text and label information as dataset1
6. Try to load the faiss index from file to dataset2
7. Get `KeyError: "Column embeddings not in the dataset"`
I've made a colab notebook that should show exactly what I did. Please switch to GPU runtime; I didn't check on CPU.
https://colab.research.google.com/drive/1X0S9ZuZ8k0ybcoei4w7so6dS_WrABmIx?usp=sharing
Ubuntu Version
VERSION="18.04.5 LTS (Bionic Beaver)"
datasets==1.4.1
faiss==1.5.3
faiss-gpu==1.7.0
torch==1.8.0+cu101
transformers==4.3.3
NVIDIA-SMI 460.56
Driver Version: 460.32.03
CUDA Version: 11.2
Tesla K80
I was basically following the steps here: https://huggingface.co/docs/datasets/faiss_and_ea.html#adding-a-faiss-index
I included the exact code from the documentation at the end of the notebook to show that they don't work either.
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KeyError on using map after renaming a column
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[
"Hi,\r\n\r\nActually, the error occurs due to these two lines:\r\n```python\r\nraw_dataset.set_format('torch',columns=['img','label'])\r\nraw_dataset = raw_dataset.rename_column('img','image')\r\n```\r\n`Dataset.rename_column` doesn't update the `_format_columns` attribute, previously defined by `Dataset.set_format`, with a new column name which is why this new column is missing in the output.",
"Hi @mariosasko,\n\nThanks for opening a PR on this :)\nWhy does the old name also disappear?",
"I just merged a @mariosasko 's PR that fixes this issue.\r\nIf it happens again, feel free to re-open :)"
] | 2021-03-10T18:54:17 | 2021-03-11T14:39:34 | 2021-03-11T14:38:40 |
CONTRIBUTOR
| null | null | null |
Hi,
I'm trying to use `cifar10` dataset. I want to rename the `img` feature to `image` in order to make it consistent with `mnist`, which I'm also planning to use. By doing this, I was trying to avoid modifying `prepare_train_features` function.
Here is what I try:
```python
transform = Compose([ToPILImage(),ToTensor(),Normalize([0.0,0.0,0.0],[1.0,1.0,1.0])])
def prepare_features(examples):
images = []
labels = []
print(examples)
for example_idx, example in enumerate(examples["image"]):
if transform is not None:
images.append(transform(examples["image"][example_idx].permute(2,0,1)))
else:
images.append(examples["image"][example_idx].permute(2,0,1))
labels.append(examples["label"][example_idx])
output = {"label":labels, "image":images}
return output
raw_dataset = load_dataset('cifar10')
raw_dataset.set_format('torch',columns=['img','label'])
raw_dataset = raw_dataset.rename_column('img','image')
features = datasets.Features({
"image": datasets.Array3D(shape=(3,32,32),dtype="float32"),
"label": datasets.features.ClassLabel(names=[
"airplane",
"automobile",
"bird",
"cat",
"deer",
"dog",
"frog",
"horse",
"ship",
"truck",
]),
})
train_dataset = raw_dataset.map(prepare_features, features = features,batched=True, batch_size=10000)
```
The error:
```python
---------------------------------------------------------------------------
KeyError Traceback (most recent call last)
<ipython-input-54-bf29672c53ee> in <module>()
14 ]),
15 })
---> 16 train_dataset = raw_dataset.map(prepare_features, features = features,batched=True, batch_size=10000)
2 frames
/usr/local/lib/python3.7/dist-packages/datasets/arrow_dataset.py in map(self, function, with_indices, input_columns, batched, batch_size, drop_last_batch, remove_columns, keep_in_memory, load_from_cache_file, cache_file_name, writer_batch_size, features, disable_nullable, fn_kwargs, num_proc, suffix_template, new_fingerprint)
1287 test_inputs = self[:2] if batched else self[0]
1288 test_indices = [0, 1] if batched else 0
-> 1289 update_data = does_function_return_dict(test_inputs, test_indices)
1290 logger.info("Testing finished, running the mapping function on the dataset")
1291
/usr/local/lib/python3.7/dist-packages/datasets/arrow_dataset.py in does_function_return_dict(inputs, indices)
1258 fn_args = [inputs] if input_columns is None else [inputs[col] for col in input_columns]
1259 processed_inputs = (
-> 1260 function(*fn_args, indices, **fn_kwargs) if with_indices else function(*fn_args, **fn_kwargs)
1261 )
1262 does_return_dict = isinstance(processed_inputs, Mapping)
<ipython-input-52-b4dccbafb70d> in prepare_features(examples)
3 labels = []
4 print(examples)
----> 5 for example_idx, example in enumerate(examples["image"]):
6 if transform is not None:
7 images.append(transform(examples["image"][example_idx].permute(2,0,1)))
KeyError: 'image'
```
The print statement inside returns this:
```python
{'label': tensor([6, 9])}
```
Apparently, both `img` and `image` do not exist after renaming.
Note that this code works fine with `img` everywhere.
Notebook: https://colab.research.google.com/drive/1SzESAlz3BnVYrgQeJ838vbMp1OsukiA2?usp=sharing
|
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MDU6SXNzdWU4Mjc0MzUwMzM=
| 2,022 |
ValueError when rename_column on splitted dataset
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[
"Hi,\r\n\r\nThis is a bug so thanks for reporting it. `Dataset.__setstate__` is the problem, which is called when `Dataset.rename_column` tries to copy the dataset with `copy.deepcopy(self)`. This only happens if the `split` arg in `load_dataset` was defined as `ReadInstruction`.\r\n\r\nTo overcome this issue, use the named splits API (for now):\r\n```python\r\ntrain_ds, test_ds = load_dataset(\r\n path='csv', \r\n delimiter='\\t', \r\n data_files=text_files, \r\n split=['train[:90%]', 'train[-10%:]'],\r\n)\r\n\r\ntrain_ds = train_ds.rename_column('sentence', 'text')\r\n```",
"This has been fixed in #2043 , thanks @mariosasko \r\nThe fix is available on master and we'll do a new release soon :)\r\n\r\nfeel free to re-open if you still have issues"
] | 2021-03-10T09:40:38 | 2021-03-16T14:06:08 | 2021-03-16T14:05:05 |
NONE
| null | null | null |
Hi there,
I am loading `.tsv` file via `load_dataset` and subsequently split the rows into training and test set via the `ReadInstruction` API like so:
```python
split = {
'train': ReadInstruction('train', to=90, unit='%'),
'test': ReadInstruction('train', from_=-10, unit='%')
}
dataset = load_dataset(
path='csv', # use 'text' loading script to load from local txt-files
delimiter='\t', # xxx
data_files=text_files, # list of paths to local text files
split=split, # xxx
)
dataset
```
Part of output:
```python
DatasetDict({
train: Dataset({
features: ['sentence', 'sentiment'],
num_rows: 900
})
test: Dataset({
features: ['sentence', 'sentiment'],
num_rows: 100
})
})
```
Afterwards I'd like to rename the 'sentence' column to 'text' in order to be compatible with my modelin pipeline. If I run the following code I experience a `ValueError` however:
```python
dataset['train'].rename_column('sentence', 'text')
```
```python
/usr/local/lib/python3.7/dist-packages/datasets/splits.py in __init__(self, name)
353 for split_name in split_names_from_instruction:
354 if not re.match(_split_re, split_name):
--> 355 raise ValueError(f"Split name should match '{_split_re}'' but got '{split_name}'.")
356
357 def __str__(self):
ValueError: Split name should match '^\w+(\.\w+)*$'' but got 'ReadInstruction('.
```
In particular, these behavior does not arise if I use the deprecated `rename_column_` method. Any idea what causes the error? Would assume something in the way I defined the split.
Thanks in advance! :)
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Interactively doing save_to_disk and load_from_disk corrupts the datasets object?
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[
"Hi,\r\n\r\nCan you give us a minimal reproducible example? This [part](https://huggingface.co/docs/datasets/master/processing.html#controling-the-cache-behavior) of the docs explains how to control caching."
] | 2021-03-10T02:48:34 | 2021-03-13T10:07:41 | 2021-03-13T10:07:41 |
NONE
| null | null | null |
dataset_info.json file saved after using save_to_disk gets corrupted as follows.
Is there a way to disable the cache that will save to /tmp/huggiface/datastes ?
I have a feeling there is a serious issue with cashing.
|
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No upstream branch
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[
"What's the issue exactly ?\r\n\r\nGiven an `upstream` remote repository with url `https://github.com/huggingface/datasets.git`, you can totally rebase from `upstream/master`.\r\n\r\nIt's mentioned at the beginning how to add the `upstream` remote repository\r\n\r\nhttps://github.com/huggingface/datasets/blob/987df6b4e9e20fc0c92bc9df48137d170756fd7b/ADD_NEW_DATASET.md#L10-L14",
"~~What difference is there with the default `origin` remote that is set when you clone the repo?~~ I've just understood that this applies to **forks** of the repo 🤡 "
] | 2021-03-09T09:48:55 | 2021-03-09T11:33:31 | 2021-03-09T11:33:31 |
CONTRIBUTOR
| null | null | null |
Feels like the documentation on adding a new dataset is outdated?
https://github.com/huggingface/datasets/blob/987df6b4e9e20fc0c92bc9df48137d170756fd7b/ADD_NEW_DATASET.md#L49-L54
There is no upstream branch on remote.
|
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Local testing fails
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[
"I'm not able to reproduce on my side.\r\nCan you provide the full stacktrace please ?\r\nWhat version of `python` and `dill` do you have ? Which OS are you using ?",
"```\r\nco_filename = '<ipython-input-2-e0383a102aae>', returned_obj = [0]\r\n \r\n def create_ipython_func(co_filename, returned_obj):\r\n def func():\r\n return returned_obj\r\n \r\n code = func.__code__\r\n> code = CodeType(*[getattr(code, k) if k != \"co_filename\" else co_filename for k in code_args])\r\nE TypeError: an integer is required (got type bytes)\r\n\r\ntests/test_caching.py:152: TypeError\r\n```\r\n\r\nPython 3.8.8 \r\ndill==0.3.1.1\r\n",
"I managed to reproduce. This comes from the CodeType init signature that is different in python 3.8.8\r\nI opened a PR to fix this test\r\nThanks !"
] | 2021-03-09T09:01:38 | 2021-03-09T14:06:03 | 2021-03-09T14:06:03 |
CONTRIBUTOR
| null | null | null |
I'm following the CI setup as described in
https://github.com/huggingface/datasets/blob/8eee4fa9e133fe873a7993ba746d32ca2b687551/.circleci/config.yml#L16-L19
in a new conda environment, at commit https://github.com/huggingface/datasets/commit/4de6dbf84e93dad97e1000120d6628c88954e5d4
and getting
```
FAILED tests/test_caching.py::RecurseDumpTest::test_dump_ipython_function - TypeError: an integer is required (got type bytes)
1 failed, 2321 passed, 5109 skipped, 10 warnings in 124.32s (0:02:04)
```
Seems like a discrepancy with CI, perhaps a lib version that's not controlled?
Tried with `pyarrow=={1.0.0,0.17.1,2.0.0}`
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Ambiguous documentation
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"Hi @theo-m !\r\n\r\nA few lines above this line, you'll find that the `_split_generators` method returns a list of `SplitGenerator`s objects:\r\n\r\n```python\r\ndatasets.SplitGenerator(\r\n name=datasets.Split.VALIDATION,\r\n # These kwargs will be passed to _generate_examples\r\n gen_kwargs={\r\n \"filepath\": os.path.join(data_dir, \"dev.jsonl\"),\r\n \"split\": \"dev\",\r\n },\r\n),\r\n```\r\n\r\nNotice the `gen_kwargs` argument passed to the constructor of `SplitGenerator`: this dict will be unpacked as keyword arguments to pass to the `_generat_examples` method (in this case the `filepath` and `split` arguments).\r\n\r\nLet me know if that helps!",
"Oh ok I hadn't made the connection between those two, will offer a tweak to the comment and the template then - thanks!"
] | 2021-03-09T08:42:11 | 2021-03-12T15:01:34 | 2021-03-12T15:01:34 |
CONTRIBUTOR
| null | null | null |
https://github.com/huggingface/datasets/blob/2ac9a0d24a091989f869af55f9f6411b37ff5188/templates/new_dataset_script.py#L156-L158
Looking at the template, I find this documentation line to be confusing, the method parameters don't include the `gen_kwargs` so I'm unclear where they're coming from.
Happy to push a PR with a clearer statement when I understand the meaning.
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MDU6SXNzdWU4MjQ1MTgxNTg=
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How to not load huggingface datasets into memory
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[
"So maybe a summary here: \r\nIf I could fit a large model with batch_size = X into memory, is there a way I could train this model for huge datasets with keeping setting the same? thanks ",
"The `datastets` library doesn't load datasets into memory. Therefore you can load a dataset that is terabytes big without filling up your RAM.\r\n\r\nThe only thing that's loaded into memory during training is the batch used in the training step.\r\nSo as long as your model works with batch_size = X, then you can load an even bigger dataset and it will work as well with the same batch_size.\r\n\r\nNote that you still have to take into account that some batches take more memory than others, depending on the texts lengths. If it works for a batch with batch_size = X and with texts of maximum length, then it will work for all batches.\r\n\r\nIn your case I guess that there are a few long sentences in the dataset. For those long sentences you get a memory error on your GPU because they're too long. By passing `max_train_samples` you may have taken a subset of the dataset that only contain short sentences. That's probably why in your case it worked only when you set `max_train_samples`.\r\nI'd suggest you to reduce the batch size so that the batches with long sentences can be loaded on the GPU.\r\n\r\nLet me know if that helps or if you have other questions"
] | 2021-03-08T12:35:26 | 2021-08-04T18:02:25 | 2021-08-04T18:02:25 |
NONE
| null | null | null |
Hi
I am running this example from transformers library version 4.3.3:
(Here is the full documentation https://github.com/huggingface/transformers/issues/8771 but the running command should work out of the box)
USE_TF=0 deepspeed run_seq2seq.py --model_name_or_path google/mt5-base --dataset_name wmt16 --dataset_config_name ro-en --source_prefix "translate English to Romanian: " --task translation_en_to_ro --output_dir /test/test_large --do_train --do_eval --predict_with_generate --max_train_samples 500 --max_val_samples 500 --max_source_length 128 --max_target_length 128 --sortish_sampler --per_device_train_batch_size 8 --val_max_target_length 128 --deepspeed ds_config.json --num_train_epochs 1 --eval_steps 25000 --warmup_steps 500 --overwrite_output_dir
(Here please find the script: https://github.com/huggingface/transformers/blob/master/examples/seq2seq/run_seq2seq.py)
If you do not pass max_train_samples in above command to load the full dataset, then I get memory issue on a gpu with 24 GigBytes of memory.
I need to train large-scale mt5 model on large-scale datasets of wikipedia (multiple of them concatenated or other datasets in multiple languages like OPUS), could you help me how I can avoid loading the full data into memory? to make the scripts not related to data size?
In above example, I was hoping the script could work without relying on dataset size, so I can still train the model without subsampling training set.
thank you so much @lhoestq for your great help in advance
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Setting to torch format not working with torchvision and MNIST
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[
"Adding to the previous information, I think `torch.utils.data.DataLoader` is doing some conversion. \r\nWhat I tried:\r\n```python\r\ntrain_dataset = load_dataset('mnist')\r\n```\r\nI don't use any `map` or `set_format` or any `transform`. I use this directly, and try to load batches using the `DataLoader` with batch size 2, I get an output like this for the `image`:\r\n\r\n```\r\n[[tensor([0, 0]), tensor([0, 0]), tensor([0, 0]), tensor([0, 0]), tensor([0, 0]), tensor([0, 0]), tensor([0, 0]), tensor([0, 0]), tensor([0, 0]), tensor...\r\n```\r\nFor `label`, it works fine:\r\n```\r\ntensor([7, 6])\r\n```\r\nNote that I didn't specify conversion to torch tensors anywhere.\r\n\r\nBasically, there are two problems here:\r\n1. `dataset.map` doesn't return tensor type objects, even though it uses the transforms, the grayscale conversion in transform was done, but the output was lists only.\r\n2. The `DataLoader` performs its own conversion, which may be not desired.\r\n\r\nI understand that we can't change `DataLoader` because it is a torch functionality, however, is there a way we can handle image data to allow using it with torch `DataLoader` and `torchvision` properly?\r\n\r\nI think if the `image` was a torch tensor (N,H,W,C), or a list of torch tensors (H,W,C), before it is passed to `DataLoader`, then we might not face this issue. ",
"What's the feature types of your new dataset after `.map` ?\r\n\r\nCan you try with adding `features=` in the `.map` call in order to set the \"image\" feature type to `Array2D` ?\r\nThe default feature type is lists of lists, we've not implemented shape verification to use ArrayXD instead of nested lists yet",
"Hi @lhoestq\r\n\r\nRaw feature types are like this:\r\n```\r\nImage:\r\n<class 'list'> 60000 #(type, len)\r\n<class 'list'> 28\r\n<class 'list'> 28\r\n<class 'int'>\r\nLabel:\r\n<class 'list'> 60000\r\n<class 'int'>\r\n```\r\nInside the `prepare_feature` method with batch size 100000 , after processing, they are like this:\r\n\r\nInside Prepare Train Features\r\n```\r\nImage:\r\n<class 'list'> 10000\r\n<class 'torch.Tensor'> 1\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'>\r\nLabel:\r\n<class 'list'> 10000\r\n<class 'torch.Tensor'>\r\n```\r\n\r\nAfter map, the feature type are like this:\r\n```\r\nImage:\r\n<class 'list'> 60000\r\n<class 'list'> 1\r\n<class 'list'> 28\r\n<class 'list'> 28\r\n<class 'float'>\r\nLabel:\r\n<class 'list'> 60000\r\n<class 'int'>\r\n```\r\n\r\nAfter dataloader with batch size 2, the batch features are like this:\r\n```\r\nImage:\r\n<class 'list'> 1\r\n<class 'list'> 28\r\n<class 'list'> 28\r\n<class 'torch.Tensor'> 2\r\n<class 'torch.Tensor'>\r\nLabel:\r\n<class 'torch.Tensor'> 2\r\n<class 'torch.Tensor'>\r\n```\r\n<hr>\r\n\r\nWhen I was setting the format of `train_dataset` to 'torch' after mapping - \r\n```\r\nImage:\r\n<class 'list'> 60000\r\n<class 'list'> 1\r\n<class 'list'> 28\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'>\r\nLabel:\r\n<class 'torch.Tensor'> 60000\r\n<class 'torch.Tensor'>\r\n```\r\n\r\nCorresponding DataLoader batch:\r\n```\r\nFrom DataLoader batch features\r\nImage:\r\n<class 'list'> 1\r\n<class 'list'> 28\r\n<class 'torch.Tensor'> 2\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'>\r\nLabel:\r\n<class 'torch.Tensor'> 2\r\n<class 'torch.Tensor'>\r\n```\r\n\r\nI will check with features and get back.\r\n\r\n\r\n\r\n",
"Hi @lhoestq\r\n\r\n# Using Array3D\r\nI tried this:\r\n```python\r\nfeatures = datasets.Features({\r\n \"image\": datasets.Array3D(shape=(1,28,28),dtype=\"float32\"),\r\n \"label\": datasets.features.ClassLabel(names=[\"0\", \"1\", \"2\", \"3\", \"4\", \"5\", \"6\", \"7\", \"8\", \"9\"]),\r\n })\r\ntrain_dataset = raw_dataset.map(prepare_features, features = features,batched=True, batch_size=10000)\r\n```\r\nand it didn't fix the issue.\r\n\r\nDuring the `prepare_train_features:\r\n```\r\nImage:\r\n<class 'list'> 10000\r\n<class 'torch.Tensor'> 1\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'>\r\nLabel:\r\n<class 'list'> 10000\r\n<class 'torch.Tensor'>\r\n```\r\n\r\nAfter the `map`:\r\n\r\n```\r\nImage:\r\n<class 'list'> 60000\r\n<class 'list'> 1\r\n<class 'list'> 28\r\n<class 'list'> 28\r\n<class 'float'>\r\nLabel:\r\n<class 'list'> 60000\r\n<class 'int'>\r\n```\r\nFrom the DataLoader batch:\r\n```\r\nImage:\r\n<class 'list'> 1\r\n<class 'list'> 28\r\n<class 'list'> 28\r\n<class 'torch.Tensor'> 2\r\n<class 'torch.Tensor'>\r\nLabel:\r\n<class 'torch.Tensor'> 2\r\n<class 'torch.Tensor'>\r\n```\r\nIt is the same as before.\r\n\r\n---\r\n\r\nUsing `datasets.Sequence(datasets.Array2D(shape=(28,28),dtype=\"float32\"))` gave an error during `map`:\r\n\r\n```python\r\nArrowNotImplementedError Traceback (most recent call last)\r\n<ipython-input-95-d28e69289084> in <module>()\r\n 3 \"label\": datasets.features.ClassLabel(names=[\"0\", \"1\", \"2\", \"3\", \"4\", \"5\", \"6\", \"7\", \"8\", \"9\"]),\r\n 4 })\r\n----> 5 train_dataset = raw_dataset.map(prepare_features, features = features,batched=True, batch_size=10000)\r\n\r\n15 frames\r\n/usr/local/lib/python3.7/dist-packages/datasets/dataset_dict.py in map(self, function, with_indices, input_columns, batched, batch_size, remove_columns, keep_in_memory, load_from_cache_file, cache_file_names, writer_batch_size, features, disable_nullable, fn_kwargs, num_proc)\r\n 446 num_proc=num_proc,\r\n 447 )\r\n--> 448 for k, dataset in self.items()\r\n 449 }\r\n 450 )\r\n\r\n/usr/local/lib/python3.7/dist-packages/datasets/dataset_dict.py in <dictcomp>(.0)\r\n 446 num_proc=num_proc,\r\n 447 )\r\n--> 448 for k, dataset in self.items()\r\n 449 }\r\n 450 )\r\n\r\n/usr/local/lib/python3.7/dist-packages/datasets/arrow_dataset.py in map(self, function, with_indices, input_columns, batched, batch_size, drop_last_batch, remove_columns, keep_in_memory, load_from_cache_file, cache_file_name, writer_batch_size, features, disable_nullable, fn_kwargs, num_proc, suffix_template, new_fingerprint)\r\n 1307 fn_kwargs=fn_kwargs,\r\n 1308 new_fingerprint=new_fingerprint,\r\n-> 1309 update_data=update_data,\r\n 1310 )\r\n 1311 else:\r\n\r\n/usr/local/lib/python3.7/dist-packages/datasets/arrow_dataset.py in wrapper(*args, **kwargs)\r\n 202 }\r\n 203 # apply actual function\r\n--> 204 out: Union[\"Dataset\", \"DatasetDict\"] = func(self, *args, **kwargs)\r\n 205 datasets: List[\"Dataset\"] = list(out.values()) if isinstance(out, dict) else [out]\r\n 206 # re-apply format to the output\r\n\r\n/usr/local/lib/python3.7/dist-packages/datasets/fingerprint.py in wrapper(*args, **kwargs)\r\n 335 # Call actual function\r\n 336 \r\n--> 337 out = func(self, *args, **kwargs)\r\n 338 \r\n 339 # Update fingerprint of in-place transforms + update in-place history of transforms\r\n\r\n/usr/local/lib/python3.7/dist-packages/datasets/arrow_dataset.py in _map_single(self, function, with_indices, input_columns, batched, batch_size, drop_last_batch, remove_columns, keep_in_memory, load_from_cache_file, cache_file_name, writer_batch_size, features, disable_nullable, fn_kwargs, new_fingerprint, rank, offset, update_data)\r\n 1580 if update_data:\r\n 1581 batch = cast_to_python_objects(batch)\r\n-> 1582 writer.write_batch(batch)\r\n 1583 if update_data:\r\n 1584 writer.finalize() # close_stream=bool(buf_writer is None)) # We only close if we are writing in a file\r\n\r\n/usr/local/lib/python3.7/dist-packages/datasets/arrow_writer.py in write_batch(self, batch_examples, writer_batch_size)\r\n 274 typed_sequence = TypedSequence(batch_examples[col], type=col_type, try_type=col_try_type)\r\n 275 typed_sequence_examples[col] = typed_sequence\r\n--> 276 pa_table = pa.Table.from_pydict(typed_sequence_examples)\r\n 277 self.write_table(pa_table, writer_batch_size)\r\n 278 \r\n\r\n/usr/local/lib/python3.7/dist-packages/pyarrow/table.pxi in pyarrow.lib.Table.from_pydict()\r\n\r\n/usr/local/lib/python3.7/dist-packages/pyarrow/array.pxi in pyarrow.lib.asarray()\r\n\r\n/usr/local/lib/python3.7/dist-packages/pyarrow/array.pxi in pyarrow.lib.array()\r\n\r\n/usr/local/lib/python3.7/dist-packages/pyarrow/array.pxi in pyarrow.lib._handle_arrow_array_protocol()\r\n\r\n/usr/local/lib/python3.7/dist-packages/datasets/arrow_writer.py in __arrow_array__(self, type)\r\n 95 out = pa.ExtensionArray.from_storage(type, pa.array(self.data, type.storage_dtype))\r\n 96 else:\r\n---> 97 out = pa.array(self.data, type=type)\r\n 98 if trying_type and out[0].as_py() != self.data[0]:\r\n 99 raise TypeError(\r\n\r\n/usr/local/lib/python3.7/dist-packages/pyarrow/array.pxi in pyarrow.lib.array()\r\n\r\n/usr/local/lib/python3.7/dist-packages/pyarrow/array.pxi in pyarrow.lib._sequence_to_array()\r\n\r\n/usr/local/lib/python3.7/dist-packages/pyarrow/error.pxi in pyarrow.lib.pyarrow_internal_check_status()\r\n\r\n/usr/local/lib/python3.7/dist-packages/pyarrow/error.pxi in pyarrow.lib.check_status()\r\n\r\nArrowNotImplementedError: extension\r\n```",
"# Convert raw tensors to torch format\r\nStrangely, converting to torch tensors works perfectly on `raw_dataset`:\r\n```python\r\nraw_dataset.set_format('torch',columns=['image','label'])\r\n```\r\nTypes:\r\n```\r\nImage:\r\n<class 'torch.Tensor'> 60000\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'>\r\nLabel:\r\n<class 'torch.Tensor'> 60000\r\n<class 'torch.Tensor'>\r\n```\r\n\r\nUsing this for transforms:\r\n```python\r\ndef prepare_features(examples):\r\n images = []\r\n labels = []\r\n for example_idx, example in enumerate(examples[\"image\"]):\r\n if transform is not None:\r\n images.append(transform(\r\n examples[\"image\"][example_idx].numpy()\r\n ))\r\n else:\r\n images.append(examples[\"image\"][example_idx].numpy())\r\n labels.append(examples[\"label\"][example_idx])\r\n output = {\"label\":labels, \"image\":images}\r\n return output\r\n```\r\n\r\nInside `prepare_train_features`:\r\n```\r\nImage:\r\n<class 'list'> 10000\r\n<class 'torch.Tensor'> 1\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'>\r\nLabel:\r\n<class 'list'> 10000\r\n<class 'torch.Tensor'>\r\n```\r\n\r\nAfter `map`:\r\n```\r\nImage:\r\n<class 'list'> 60000\r\n<class 'list'> 1\r\n<class 'list'> 28\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'>\r\nLabel:\r\n<class 'torch.Tensor'> 60000\r\n<class 'torch.Tensor'>\r\n```\r\nDataLoader batch:\r\n\r\n```\r\nImage:\r\n<class 'list'> 1\r\n<class 'list'> 28\r\n<class 'torch.Tensor'> 2\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'>\r\nLabel:\r\n<class 'torch.Tensor'> 2\r\n<class 'torch.Tensor'>\r\n```\r\n\r\n---\r\n\r\n## Using `torch` format:\r\n```\r\nImage:\r\n<class 'list'> 60000\r\n<class 'list'> 1\r\n<class 'list'> 28\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'>\r\nLabel:\r\n<class 'torch.Tensor'> 60000\r\n<class 'torch.Tensor'>\r\n```\r\nDataLoader batches:\r\n\r\n```\r\nImage:\r\n<class 'list'> 1\r\n<class 'list'> 28\r\n<class 'torch.Tensor'> 2\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'>\r\nLabel:\r\n<class 'torch.Tensor'> 2\r\n<class 'torch.Tensor'>\r\n```\r\n\r\n---\r\n## Using the features - `Array3D`:\r\n\r\n```\r\nImage:\r\n<class 'list'> 10000\r\n<class 'torch.Tensor'> 1\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'>\r\nLabel:\r\n<class 'list'> 10000\r\n<class 'torch.Tensor'>\r\n```\r\n\r\nAfter `map`:\r\n```\r\nImage:\r\n<class 'torch.Tensor'> 60000\r\n<class 'torch.Tensor'> 1\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'>\r\nLabel:\r\n<class 'torch.Tensor'> 60000\r\n<class 'torch.Tensor'>\r\n```\r\n\r\nAfter DataLoader `batch`:\r\n```\r\nImage:\r\n<class 'torch.Tensor'> 2\r\n<class 'torch.Tensor'> 1\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'> 28\r\n<class 'torch.Tensor'>\r\nLabel:\r\n<class 'torch.Tensor'> 2\r\n<class 'torch.Tensor'>\r\n```\r\n\r\nThe last one works perfectly.\r\n\r\n\r\n\r\nI wonder why this worked, and others didn't.\r\n\r\n\r\n\r\n\r\n\r\n\r\n",
"Concluding, the way it works right now is:\r\n\r\n1. Converting raw dataset to `torch` format.\r\n2. Use the transform and apply using `map`, ensure the returned values are tensors. \r\n3. When mapping, use `features` with `image` being `Array3D` type.",
"What the dataset returns depends on the feature type.\r\nFor a feature type that is Sequence(Sequence(Sequence(Value(\"uint8\")))), a dataset formatted as \"torch\" return lists of lists of tensors. This is because the lists lengths may vary.\r\nFor a feature type that is Array3D on the other hand it returns one tensor. This is because the size of the tensor is fixed and defined bu the Array3D type.",
"Okay, that makes sense.\r\nRaw images are list of Array2D, hence we get a single tensor when `set_format` is used. But, why should I need to convert the raw images to `torch` format when `map` does this internally?\r\n\r\nUsing `Array3D` did not work with `map` when raw images weren't `set_format`ted to torch type.",
"I understand that `map` needs to know what kind of output tensors are expected, and thus converting the raw dataset to `torch` format is necessary. Closing the issue since it is resolved."
] | 2021-03-08T07:38:11 | 2021-03-09T17:58:13 | 2021-03-09T17:58:13 |
CONTRIBUTOR
| null | null | null |
Hi
I am trying to use `torchvision.transforms` to handle the transformation of the image data in the `mnist` dataset. Assume I have a `transform` variable which contains the `torchvision.transforms` object.
A snippet of what I am trying to do:
```python
def prepare_features(examples):
images = []
labels = []
for example_idx, example in enumerate(examples["image"]):
if transform is not None:
images.append(transform(
np.array(examples["image"][example_idx], dtype=np.uint8)
))
else:
images.append(torch.tensor(np.array(examples["image"][example_idx], dtype=np.uint8)))
labels.append(torch.tensor(examples["label"][example_idx]))
output = {"label":labels, "image":images}
return output
raw_dataset = load_dataset('mnist')
train_dataset = raw_dataset.map(prepare_features, batched=True, batch_size=10000)
train_dataset.set_format("torch",columns=["image","label"])
```
After this, I check the type of the following:
```python
print(type(train_dataset["train"]["label"]))
print(type(train_dataset["train"]["image"][0]))
```
This leads to the following output:
```python
<class 'torch.Tensor'>
<class 'list'>
```
I use `torch.utils.DataLoader` for batches, the type of `batch["train"]["image"]` is also `<class 'list'>`.
I don't understand why only the `label` is converted to a torch tensor, why does the image not get converted? How can I fix this issue?
Thanks,
Gunjan
EDIT:
I just checked the shapes, and the types, `batch[image]` is a actually a list of list of tensors. Shape is (1,28,2,28), where `batch_size` is 2. I don't understand why this is happening. Ideally it should be a tensor of shape (2,1,28,28).
EDIT 2:
Inside `prepare_train_features`, the shape of `images[0]` is `torch.Size([1,28,28])`, the conversion is working. However, the output of the `map` is a list of list of list of list.
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Messages are being printed to the `stdout`
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[
"This is expected to show this message to the user via stdout.\r\nThis way the users see it directly and can cancel the downloading if they want to.\r\nCould you elaborate why it would be better to have it in stderr instead of stdout ?",
"@lhoestq, sorry for the late reply\r\n\r\nI completely understand why you decided to output a message that is always shown. The only problem is that the message is printed to the `stdout`. For example, if the user runs `python run_glue.py > log_file`, it will redirect `stdout` to the file named `log_file`, and the message will not be shown to the user.\r\n\r\nInstead, we should print this message to `stderr`. Even in the case of `python run_glue.py > log_file` only `stdout` is being redirected and so the message is always shown.",
"We now log these messages to `stderr` (the built-in `logging` module's default behavior). "
] | 2021-03-07T22:09:34 | 2023-07-25T16:35:21 | 2023-07-25T16:35:21 |
NONE
| null | null | null |
In this code segment, we can see some messages are being printed to the `stdout`.
https://github.com/huggingface/datasets/blob/7e60bb509b595e8edc60a87f32b2bacfc065d607/src/datasets/builder.py#L545-L554
According to the comment, it is done intentionally, but I don't really understand why don't we log it with a higher level or print it directly to the `stderr`.
In my opinion, this kind of messages should never printed to the stdout. At least some configuration/flag should make it possible to provide in order to explicitly prevent the package to contaminate the stdout.
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Empty evidence document ("provenance") in KILT ELI5 dataset
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[
"Why did you close this issue? How did you end up finding the evidence documents? I'm running into a similar issue with other KILT tasks."
] | 2021-03-07T15:41:35 | 2022-12-19T19:25:14 | 2021-03-17T05:51:01 |
NONE
| null | null | null |
In the original KILT benchmark(https://github.com/facebookresearch/KILT),
all samples has its evidence document (i.e. wikipedia page id) for prediction.
For example, a sample in ELI5 dataset has the format including provenance (=evidence document) like this
`{"id": "1kiwfx", "input": "In Trading Places (1983, Akroyd/Murphy) how does the scheme at the end of the movie work? Why would buying a lot of OJ at a high price ruin the Duke Brothers?", "output": [{"answer": "I feel so old. People have been askinbg what happened at the end of this movie for what must be the last 15 years of my life. It never stops. Every year/month/fortnight, I see someone asking what happened, and someone explaining. Andf it will keep on happening, until I am 90yrs old, in a home, with nothing but the Internet and my bladder to keep me going. And there it will be: \"what happens at the end of Trading Places?\""}, {"provenance": [{"wikipedia_id": "242855", "title": "Futures contract", "section": "Section::::Abstract.", "start_paragraph_id": 1, "start_character": 14, "end_paragraph_id": 1, "end_character": 612, "bleu_score": 0.9232808519770748}]}], "meta": {"partial_evidence": [{"wikipedia_id": "520990", "title": "Trading Places", "section": "Section::::Plot.\n", "start_paragraph_id": 7, "end_paragraph_id": 7, "meta": {"evidence_span": ["On television, they learn that Clarence Beeks is transporting a secret USDA report on orange crop forecasts.", "On television, they learn that Clarence Beeks is transporting a secret USDA report on orange crop forecasts. Winthorpe and Valentine recall large payments made to Beeks by the Dukes and realize that the Dukes plan to obtain the report to corner the market on frozen orange juice.", "Winthorpe and Valentine recall large payments made to Beeks by the Dukes and realize that the Dukes plan to obtain the report to corner the market on frozen orange juice."]}}]}}`
However, KILT ELI5 dataset from huggingface datasets library only contain empty list of provenance.
`{'id': '1oy5tc', 'input': 'in football whats the point of wasting the first two plays with a rush - up the middle - not regular rush plays i get those', 'meta': {'left_context': '', 'mention': '', 'obj_surface': [], 'partial_evidence': [], 'right_context': '', 'sub_surface': [], 'subj_aliases': [], 'template_questions': []}, 'output': [{'answer': 'In most cases the O-Line is supposed to make a hole for the running back to go through. If you run too many plays to the outside/throws the defense will catch on.\n\nAlso, 2 5 yard plays gets you a new set of downs.', 'meta': {'score': 2}, 'provenance': []}, {'answer': "I you don't like those type of plays, watch CFL. We only get 3 downs so you can't afford to waste one. Lots more passing.", 'meta': {'score': 2}, 'provenance': []}]}
`
should i perform other procedure to obtain evidence documents?
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[
"Hi @itsLuisa !\r\n\r\nCould you give us more information about the error you're getting, please?\r\nA copy-paste of the Traceback would be nice to get a better understanding of what is wrong :) ",
"Hello @SBrandeis , this is it:\r\n```\r\nTraceback (most recent call last):\r\n File \"C:\\Users\\Luisa\\AppData\\Local\\Programs\\Python\\Python38\\lib\\site-packages\\datasets\\builder.py\", line 537, in incomplete_dir\r\n yield tmp_dir\r\n File \"C:\\Users\\Luisa\\AppData\\Local\\Programs\\Python\\Python38\\lib\\site-packages\\datasets\\builder.py\", line 578, in download_and_prepare\r\n self._download_and_prepare(\r\n File \"C:\\Users\\Luisa\\AppData\\Local\\Programs\\Python\\Python38\\lib\\site-packages\\datasets\\builder.py\", line 656, in _download_and_prepare\r\n self._prepare_split(split_generator, **prepare_split_kwargs)\r\n File \"C:\\Users\\Luisa\\AppData\\Local\\Programs\\Python\\Python38\\lib\\site-packages\\datasets\\builder.py\", line 982, in _prepare_split\r\n num_examples, num_bytes = writer.finalize()\r\n File \"C:\\Users\\Luisa\\AppData\\Local\\Programs\\Python\\Python38\\lib\\site-packages\\datasets\\arrow_writer.py\", line 297, in finalize\r\n self.write_on_file()\r\n File \"C:\\Users\\Luisa\\AppData\\Local\\Programs\\Python\\Python38\\lib\\site-packages\\datasets\\arrow_writer.py\", line 230, in write_on_file\r\n pa_array = pa.array(typed_sequence)\r\n File \"pyarrow\\array.pxi\", line 222, in pyarrow.lib.array\r\n File \"pyarrow\\array.pxi\", line 110, in pyarrow.lib._handle_arrow_array_protocol\r\n File \"C:\\Users\\Luisa\\AppData\\Local\\Programs\\Python\\Python38\\lib\\site-packages\\datasets\\arrow_writer.py\", line 97, in __arrow_array__\r\n out = pa.array(self.data, type=type)\r\n File \"pyarrow\\array.pxi\", line 305, in pyarrow.lib.array\r\n File \"pyarrow\\array.pxi\", line 39, in pyarrow.lib._sequence_to_array\r\n File \"pyarrow\\error.pxi\", line 122, in pyarrow.lib.pyarrow_internal_check_status\r\n File \"pyarrow\\error.pxi\", line 107, in pyarrow.lib.check_status\r\npyarrow.lib.ArrowTypeError: Expected bytes, got a 'list' object\r\n\r\nDuring handling of the above exception, another exception occurred:\r\n\r\nTraceback (most recent call last):\r\n File \"C:/Users/Luisa/Documents/Uni/WS 2020,21/Neural Networks/Final_Project/NN_Project/data_loading.py\", line 122, in <module>\r\n main()\r\n File \"C:/Users/Luisa/Documents/Uni/WS 2020,21/Neural Networks/Final_Project/NN_Project/data_loading.py\", line 111, in main\r\n dataset = datasets.load_dataset(\r\n File \"C:\\Users\\Luisa\\AppData\\Local\\Programs\\Python\\Python38\\lib\\site-packages\\datasets\\load.py\", line 740, in load_dataset\r\n builder_instance.download_and_prepare(\r\n File \"C:\\Users\\Luisa\\AppData\\Local\\Programs\\Python\\Python38\\lib\\site-packages\\datasets\\builder.py\", line 586, in download_and_prepare\r\n self._save_info()\r\n File \"C:\\Users\\Luisa\\AppData\\Local\\Programs\\Python\\Python38\\lib\\contextlib.py\", line 131, in __exit__\r\n self.gen.throw(type, value, traceback)\r\n File \"C:\\Users\\Luisa\\AppData\\Local\\Programs\\Python\\Python38\\lib\\site-packages\\datasets\\builder.py\", line 543, in incomplete_dir\r\n shutil.rmtree(tmp_dir)\r\n File \"C:\\Users\\Luisa\\AppData\\Local\\Programs\\Python\\Python38\\lib\\shutil.py\", line 740, in rmtree\r\n return _rmtree_unsafe(path, onerror)\r\n File \"C:\\Users\\Luisa\\AppData\\Local\\Programs\\Python\\Python38\\lib\\shutil.py\", line 618, in _rmtree_unsafe\r\n onerror(os.unlink, fullname, sys.exc_info())\r\n File \"C:\\Users\\Luisa\\AppData\\Local\\Programs\\Python\\Python38\\lib\\shutil.py\", line 616, in _rmtree_unsafe\r\n os.unlink(fullname)\r\nPermissionError: [WinError 32] Der Prozess kann nicht auf die Datei zugreifen, da sie von einem anderen Prozess verwendet wird: 'C:\\\\Users\\\\Luisa\\\\.cache\\\\huggingface\\\\datasets\\\\sample\\\\default-20ee7d51a6a9454f\\\\0.0.0\\\\5fc4c3a355ea77ab446bd31fca5082437600b8364d29b2b95264048bd1f398b1.incomplete\\\\sample-train.arrow'\r\n\r\nProcess finished with exit code 1\r\n```",
"Hi @itsLuisa, thanks for sharing the Traceback.\r\n\r\nYou are defining the \"id\" field as a `string` feature:\r\n```python\r\nclass Sample(datasets.GeneratorBasedBuilder):\r\n ...\r\n\r\n def _info(self):\r\n return datasets.DatasetInfo(\r\n features=datasets.Features(\r\n {\r\n \"id\": datasets.Value(\"string\"),\r\n # ^^ here\r\n \"tokens\": datasets.Sequence(datasets.Value(\"string\")),\r\n \"pos_tags\": datasets.Sequence(datasets.features.ClassLabel(names=[...])),\r\n[...]\r\n```\r\n\r\nBut in the `_generate_examples`, the \"id\" field is a list:\r\n```python\r\nids = list()\r\n```\r\n\r\nChanging:\r\n```python\r\n\"id\": datasets.Value(\"string\"),\r\n```\r\nInto:\r\n```python\r\n\"id\": datasets.Sequence(datasets.Value(\"string\")),\r\n```\r\n\r\nShould fix your issue.\r\n\r\nLet me know if this helps!",
"It seems to be working now, thanks a lot for the help, @SBrandeis !",
"Glad to hear it!\r\nI'm closing the issue"
] | 2021-03-07T11:55:28 | 2021-03-09T12:42:57 | 2021-03-09T12:42:57 |
NONE
| null | null | null |
Hi everyone,
Can anyone help me with why the dataset loading script below raises a Windows Permission Error? I stuck quite closely to https://github.com/huggingface/datasets/blob/master/datasets/conll2003/conll2003.py , only I want to load the data from three local three-column tsv-files (id\ttokens\tpos_tags\n). I am using the most recent version of datasets. Thank you in advance!
Luisa
My script:
```
import datasets
import csv
logger = datasets.logging.get_logger(__name__)
class SampleConfig(datasets.BuilderConfig):
def __init__(self, **kwargs):
super(SampleConfig, self).__init__(**kwargs)
class Sample(datasets.GeneratorBasedBuilder):
BUILDER_CONFIGS = [
SampleConfig(name="conll2003", version=datasets.Version("1.0.0"), description="Conll2003 dataset"),
]
def _info(self):
return datasets.DatasetInfo(
description="Dataset with words and their POS-Tags",
features=datasets.Features(
{
"id": datasets.Value("string"),
"tokens": datasets.Sequence(datasets.Value("string")),
"pos_tags": datasets.Sequence(
datasets.features.ClassLabel(
names=[
"''",
",",
"-LRB-",
"-RRB-",
".",
":",
"CC",
"CD",
"DT",
"EX",
"FW",
"HYPH",
"IN",
"JJ",
"JJR",
"JJS",
"MD",
"NN",
"NNP",
"NNPS",
"NNS",
"PDT",
"POS",
"PRP",
"PRP$",
"RB",
"RBR",
"RBS",
"RP",
"TO",
"UH",
"VB",
"VBD",
"VBG",
"VBN",
"VBP",
"VBZ",
"WDT",
"WP",
"WRB",
"``"
]
)
),
}
),
supervised_keys=None,
homepage="https://catalog.ldc.upenn.edu/LDC2011T03",
citation="Weischedel, Ralph, et al. OntoNotes Release 4.0 LDC2011T03. Web Download. Philadelphia: Linguistic Data Consortium, 2011.",
)
def _split_generators(self, dl_manager):
loaded_files = dl_manager.download_and_extract(self.config.data_files)
return [
datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": loaded_files["train"]}),
datasets.SplitGenerator(name=datasets.Split.TEST, gen_kwargs={"filepath": loaded_files["test"]}),
datasets.SplitGenerator(name=datasets.Split.VALIDATION, gen_kwargs={"filepath": loaded_files["val"]})
]
def _generate_examples(self, filepath):
logger.info("generating examples from = %s", filepath)
with open(filepath, encoding="cp1252") as f:
data = csv.reader(f, delimiter="\t")
ids = list()
tokens = list()
pos_tags = list()
for id_, line in enumerate(data):
#print(line)
if len(line) == 1:
if tokens:
yield id_, {"id": ids, "tokens": tokens, "pos_tags": pos_tags}
ids = list()
tokens = list()
pos_tags = list()
else:
ids.append(line[0])
tokens.append(line[1])
pos_tags.append(line[2])
# last example
yield id_, {"id": ids, "tokens": tokens, "pos_tags": pos_tags}
def main():
dataset = datasets.load_dataset(
"data_loading.py", data_files={
"train": "train.tsv",
"test": "test.tsv",
"val": "val.tsv"
}
)
#print(dataset)
if __name__=="__main__":
main()
```
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from datasets import MoleculeDataset, GEOMDataset
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[] | null |
[] | 2021-03-06T15:50:19 | 2021-03-06T16:13:26 | 2021-03-06T16:13:26 |
NONE
| null | null | null |
I met the ImportError: cannot import name 'MoleculeDataset' from 'datasets'. Have anyone met the similar issues? Thanks!
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Error when exploring `arabic_speech_corpus`
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[] | null |
[
"Thanks for reporting! We'll fix that as soon as possible",
"Actually soundfile is not a dependency of this dataset.\r\nThe error comes from a bug that was fixed in this commit: https://github.com/huggingface/datasets/pull/1767/commits/c304e63629f4453367de2fd42883a78768055532\r\nBasically the library used to consider the `import soundfile` in the docstring as a dependency, while it's just here as a code example.\r\n\r\nUpdating the viewer to the latest version of `datasets` should fix this issue\r\n",
"Hi! The viewer at https://huggingface.co/datasets/arabic_speech_corpus works fine. Closing."
] | 2021-03-06T05:55:20 | 2022-10-05T13:24:26 | 2022-10-05T13:24:26 |
NONE
| null | null | null |
Navigate to https://huggingface.co/datasets/viewer/?dataset=arabic_speech_corpus
Error:
```
ImportError: To be able to use this dataset, you need to install the following dependencies['soundfile'] using 'pip install soundfile' for instance'
Traceback:
File "/home/sasha/.local/share/virtualenvs/lib-ogGKnCK_/lib/python3.7/site-packages/streamlit/script_runner.py", line 332, in _run_script
exec(code, module.__dict__)
File "/home/sasha/nlp-viewer/run.py", line 233, in <module>
configs = get_confs(option)
File "/home/sasha/.local/share/virtualenvs/lib-ogGKnCK_/lib/python3.7/site-packages/streamlit/caching.py", line 604, in wrapped_func
return get_or_create_cached_value()
File "/home/sasha/.local/share/virtualenvs/lib-ogGKnCK_/lib/python3.7/site-packages/streamlit/caching.py", line 588, in get_or_create_cached_value
return_value = func(*args, **kwargs)
File "/home/sasha/nlp-viewer/run.py", line 145, in get_confs
module_path = nlp.load.prepare_module(path, dataset=True
File "/home/sasha/.local/share/virtualenvs/lib-ogGKnCK_/lib/python3.7/site-packages/datasets/load.py", line 342, in prepare_module
f"To be able to use this {module_type}, you need to install the following dependencies"
```
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not being able to get wikipedia es language
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[
"@lhoestq I really appreciate if you could help me providiing processed datasets, I do not really have access to enough resources to run the apache-beam and need to run the codes on these datasets. Only en/de/fr currently works, but I need all the languages more or less. thanks ",
"Hi @dorost1234, I think I can help you a little. I’ve processed some Wikipedia datasets (Spanish inclusive) using the HF/datasets library during recent research.\r\n\r\n@lhoestq Could you help me to upload these preprocessed datasets to Huggingface's repositories? To be more precise, I've built datasets from the following languages using the 20201201 dumps: Spanish, Portuguese, Russian, French, Japanese, Chinese, and Turkish. Process these datasets have high costs that most of the community can't afford. I think these preprocessed datasets I have could be helpful for someone without access to high-resource machines to process Wikipedia's dumps like @dorost1234\r\n\r\n",
"Thank you so much @jonatasgrosman , I greatly appreciate your help with them. \r\nYes, I unfortunately does not have access to a good resource and need it for my\r\nresearch. I greatly appreciate @lhoestq your help with uploading the processed datasets in huggingface datasets. This would be really helpful for some users like me with not access to high-memory GPU resources.\r\n\r\nthank you both so much again.\r\n\r\nOn Sat, Mar 6, 2021 at 12:55 AM Jonatas Grosman <[email protected]>\r\nwrote:\r\n\r\n> Hi @dorost1234 <https://github.com/dorost1234>, I think I can help you a\r\n> little. I’ve processed some Wikipedia datasets (Spanish inclusive) using\r\n> the HF/datasets library during recent research.\r\n>\r\n> @lhoestq <https://github.com/lhoestq> Could you help me to upload these\r\n> preprocessed datasets to Huggingface's repositories? To be more precise,\r\n> I've built datasets from the following languages using the 20201201 dumps:\r\n> Spanish, Portuguese, Russian, French, Japanese, Chinese, and Turkish.\r\n> Process these datasets have high costs that most of the community can't\r\n> afford. I think these preprocessed datasets I have could be helpful for\r\n> someone without access to high-resource machines to process Wikipedia's\r\n> dumps like @dorost1234 <https://github.com/dorost1234>\r\n>\r\n> —\r\n> You are receiving this because you were mentioned.\r\n> Reply to this email directly, view it on GitHub\r\n> <https://github.com/huggingface/datasets/issues/1994#issuecomment-791798195>,\r\n> or unsubscribe\r\n> <https://github.com/notifications/unsubscribe-auth/AS37NMWMK5GFJFU3ACCJFUDTCFVNZANCNFSM4YUZIF4A>\r\n> .\r\n>\r\n",
"Hi @dorost1234, so sorry, but looking at my files here, I figure out that I've preprocessed files using the HF/datasets for all the languages previously listed by me (Portuguese, Russian, French, Japanese, Chinese, and Turkish) except the Spanish (on my tests I've used the [wikicorpus](https://www.cs.upc.edu/~nlp/wikicorpus/) instead).\r\n\r\nOnly with the Spanish Wikipedia's dump, I had the same `KeyError: '000nbsp'` problem already reported here https://github.com/huggingface/datasets/issues/577\r\n\r\nSo nowadays, even with access to a high resource machine, you couldn't be able to get Wikipedia's Spanish data using the HF/datasets :(\r\n\r\n\r\n\r\n\r\n",
"Thanks a lot for the information and help. This would be great to have\nthese datasets.\n@lhoestq <https://github.com/lhoestq> Do you know a way I could get\nsmaller amount of these data like 1 GBtype of each language to deal with\ncomputatioanl requirements? thanks\n\nOn Sat, Mar 6, 2021 at 5:36 PM Jonatas Grosman <[email protected]>\nwrote:\n\n> Hi @dorost1234 <https://github.com/dorost1234>, so sorry, but looking at\n> my files here, I figure out that I've preprocessed files using the\n> HF/datasets for all the languages previously listed by me (Portuguese,\n> Russian, French, Japanese, Chinese, and Turkish) except the Spanish (on my\n> tests I've used the wikicorpus <https://www.cs.upc.edu/~nlp/wikicorpus/>\n> instead).\n>\n> Only with the Spanish Wikipedia's dump, I had the same KeyError: '000nbsp'\n> problem already reported here #577\n> <https://github.com/huggingface/datasets/issues/577>\n>\n> So nowadays, even with access to a high resource machine, you couldn't be\n> able to get Wikipedia's Spanish data using the HF/datasets :(\n>\n> —\n> You are receiving this because you were mentioned.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/huggingface/datasets/issues/1994#issuecomment-791985546>,\n> or unsubscribe\n> <https://github.com/notifications/unsubscribe-auth/AS37NMWMO7WOHWLOROPD6Q3TCJKXPANCNFSM4YUZIF4A>\n> .\n>\n",
"Hi ! As mentioned above the Spanish configuration have parsing issues from `mwparserfromhell`. I haven't tested with the latest `mwparserfromhell` >=0.6 though. Which version of `mwparserfromhell` are you using ?\r\n\r\n> @lhoestq Could you help me to upload these preprocessed datasets to Huggingface's repositories? To be more precise, I've built datasets from the following languages using the 20201201 dumps: Spanish, Portuguese, Russian, French, Japanese, Chinese, and Turkish. Process these datasets have high costs that most of the community can't afford. I think these preprocessed datasets I have could be helpful for someone without access to high-resource machines to process Wikipedia's dumps like @dorost1234\r\n\r\nThat would be awesome ! Feel free to ping me on slack so we can put the processed wikipedia files on google storage with the other ones we've already preprocessed.\r\n\r\n> Do you know a way I could get smaller amount of these data like 1 GBtype of each language to deal with computatioanl requirements? thanks\r\n\r\nI'd suggest to copy the [wikipedia.py](https://github.com/huggingface/datasets/blob/master/datasets/wikipedia/wikipedia.py) to a new script `custom_wikipedia.py` and modify it to only download and process only a subset of the raw data files.\r\nYou can for example replace [this line](https://github.com/huggingface/datasets/blob/64e59fc45ca2134218b3e42e83fddddbe840ff74/datasets/wikipedia/wikipedia.py#L446) by:\r\n```python\r\n if total_bytes >= (1 << 30): # stop if the total amount of data is >= 1GB\r\n break\r\n else:\r\n xml_urls.append(_base_url(lang) + fname)\r\n```\r\n\r\nThen you can load your custom wikipedia dataset with\r\n```python\r\nload_dataset(\"path/to/my/custom_wikipedia.py\", f\"{date}.{language}\")\r\n```",
"Hi @lhoestq!\r\n\r\n> Hi ! As mentioned above the Spanish configuration have parsing issues from mwparserfromhell. I haven't tested with the latest mwparserfromhell >=0.6 though. Which version of mwparserfromhell are you using ?\r\n\r\nI'm using the latest mwparserfromhell version (0.6)\r\n\r\n> That would be awesome ! Feel free to ping me on slack so we can put the processed wikipedia files on google storage with the other ones we've already preprocessed.\r\n\r\nI'll ping you there 👍 ",
"Thank you so much @jonatasgrosman and @lhoestq this would be a great help. I am really thankful to you both and to wonderful Huggingface dataset library allowing us to train models at scale."
] | 2021-03-05T08:31:48 | 2021-03-11T20:46:21 | null |
NONE
| null | null | null |
Hi
I am trying to run a code with wikipedia of config 20200501.es, getting:
Traceback (most recent call last):
File "run_mlm_t5.py", line 608, in <module>
main()
File "run_mlm_t5.py", line 359, in main
datasets = load_dataset(data_args.dataset_name, data_args.dataset_config_name)
File "/dara/libs/anaconda3/envs/success432/lib/python3.7/site-packages/datasets-1.2.1-py3.7.egg/datasets/load.py", line 612, in load_dataset
ignore_verifications=ignore_verifications,
File "/dara/libs/anaconda3/envs/success432/lib/python3.7/site-packages/datasets-1.2.1-py3.7.egg/datasets/builder.py", line 527, in download_and_prepare
dl_manager=dl_manager, verify_infos=verify_infos, **download_and_prepare_kwargs
File "/dara/libs/anaconda3/envs/success432/lib/python3.7/site-packages/datasets-1.2.1-py3.7.egg/datasets/builder.py", line 1050, in _download_and_prepare
"\n\t`{}`".format(usage_example)
datasets.builder.MissingBeamOptions: Trying to generate a dataset using Apache Beam, yet no Beam Runner or PipelineOptions() has been provided in `load_dataset` or in the builder arguments. For big datasets it has to run on large-scale data processing tools like Dataflow, Spark, etc. More information about Apache Beam runners at https://beam.apache.org/documentation/runners/capability-matrix/
If you really want to run it locally because you feel like the Dataset is small enough, you can use the local beam runner called `DirectRunner` (you may run out of memory).
Example of usage:
`load_dataset('wikipedia', '20200501.es', beam_runner='DirectRunner')`
thanks @lhoestq for any suggestion/help
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How to load a dataset with load_from disk and save it again after doing transformations without changing the original?
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"Hi ! That looks like a bug, can you provide some code so that we can reproduce ?\r\nIt's not supposed to update the original dataset",
"Hi, I experimented with RAG. \r\n\r\nActually, you can run the [use_own_knowldge_dataset.py](https://github.com/shamanez/transformers/blob/rag-end-to-end-retrieval/examples/research_projects/rag/use_own_knowledge_dataset.py#L80). In the 80 you can save the dataset object to the disk with save_to_disk. Then in order to compute the embeddings in this use **load_from_disk**. \r\n\r\nThen finally save it. You can see the original dataset object (CSV after splitting also will be changed)\r\n\r\nOne more thing- when I save the dataset object with **save_to_disk** it name the arrow file with cache.... rather than using dataset. arrow. Can you add a variable that we can feed a name to save_to_disk function?",
"@lhoestq I also found that cache in tmp directory gets updated after transformations. This is really problematic when using datasets interactively. Let's say we use the shards function to a dataset loaded with csv, atm when we do transformations to shards and combine them it updates the original csv cache. ",
"I plan to update the save_to_disk method in #2025 so I can make sure the new save_to_disk doesn't corrupt your cache files.\r\nBut from your last message it looks like save_to_disk isn't the root cause right ?",
"ok, one more thing. When we use save_to_disk there are two files other than .arrow. dataset_info.json and state.json. Sometimes most of the fields in the dataset_infor.json are null, especially when saving dataset objects. Anyways I think load_from_disk uses the arrow files mentioned in state.json right? ",
"> Anyways I think load_from_disk uses the arrow files mentioned in state.json right?\r\n\r\nYes exactly",
"Perfect. For now, I am loading the dataset from CSV in my interactive process and will wait until you make the PR!"
] | 2021-03-05T05:25:50 | 2021-03-22T04:05:50 | 2021-03-22T04:05:50 |
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I am using the latest datasets library. In my work, I first use **load_from_disk** to load a data set that contains 3.8Gb information. Then during my training process, I update that dataset object and add new elements and save it in a different place.
When I save the dataset with **save_to_disk**, the original dataset which is already in the disk also gets updated. I do not want to update it. How to prevent from this?
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`datasets.map` multi processing much slower than single processing
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"Hi @hwijeen, you might want to look at issues #1796 and #1949. I think it could be something related to the I/O operations being performed.",
"I see that many people are experiencing the same issue. Is this problem considered an \"official\" bug that is worth a closer look? @lhoestq",
"Yes this looks like a bug. On my side I haven't managed to reproduce it but @theo-m has. We'll investigate this !",
"Thank you for the reply! I would be happy to follow the discussions related to the issue.\r\nIf you do not mind, could you also give a little more explanation on my p.s.2? I am having a hard time figuring out why the single processing `map` uses all of my cores.\r\n@lhoestq @theo-m ",
"Regarding your ps2: It depends what function you pass to `map`.\r\nFor example, fast tokenizers from `transformers` in Rust tokenize texts and parallelize the tokenization over all the cores.",
"I am still experiencing this issue with datasets 1.9.0..\r\nHas there been a further investigation? \r\n<img width=\"442\" alt=\"image\" src=\"https://user-images.githubusercontent.com/29157715/126143387-8b5ddca2-a896-4e18-abf7-4fbf62a48b41.png\">\r\n",
"Hi. Is there any update on this issue? I am desperately trying to decrease my times, and multiprocessing \"should\" be the solution, but it literally takes 5 times longer.",
"Which version of `datasets` are you using ?",
"Hi,\r\n\r\nI’m running into the same issue and trying to come up with a simple benchmark. \r\n\r\n# environment info\r\nI have a total of 80 CPUs.\r\n\r\n- `datasets` version: 2.4.0\r\n- Platform: Linux-4.18.0-305.65.1.el8_4.x86_64-x86_64-with-glibc2.28\r\n- Python version: 3.10.4\r\n- PyArrow version: 8.0.0\r\n- Pandas version: 1.4.3\r\n\r\n# How to reproduce\r\n\r\n```py\r\nIn [1]: from datasets import Dataset, set_caching_enabled \r\nIn [2]: import numpy as np \r\nIn [3]: set_caching_enabled(False) \r\nIn [4]: d = Dataset.from_dict({'foo': np.random.randn(1000,256)}) \r\nIn [9]: d.set_format('np')\r\nIn [14]: def sort(array): \r\n ...: np.sort(array) \r\n# multiprocessing disabled\r\nIn [19]: %%timeit \r\n ...: d.map(sort, input_columns='foo') \r\n78.8 ms ± 1.22 ms per loop (mean ± std. dev. of 7 runs, 10 loops each) \r\n# multiprocessing enabled \r\nIn [27]: %%timeit \r\n ...: d.map(sort, input_columns='foo',num_proc=10) \r\n858 ms ± 45.4 ms per loop (mean ± std. dev. of 7 runs, 1 loop each) \r\n```",
"Spawning multiple processes has an overhead. For small datasets the processing is likely to be faster than spawning the processes and passing the data to them.\r\n\r\nEspecially since your dataset is in memory: the data has to be copied to the subprocesses.\r\nOn the other hand, datasets loaded from disk are much faster to reload from a subprocess thanks to memory mapping.",
"Thanks for the clarifications! \r\n\r\nIndeed, when saving then loading the above dataset to disk, and increasing the number of rows to 10K or 100K, the performance gap narrows.\r\n\r\n```py\r\n# with 10000 rows\r\nIn [3]: %%timeit\r\n ...: d.map(sort, input_columns='foo')\r\n578 ms ± 5.89 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\r\nIn [4]: %%timeit \r\n ...: d.map(sort, input_columns='foo',num_proc=10) \r\n1.06 s ± 47.4 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\r\n\r\n# with 100000 rows\r\nIn [6]: %%timeit\r\n ...: d.map(sort, input_columns='foo')\r\n5.8 s ± 25.5 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\r\nIn [7]: %%timeit\r\n ...: d.map(sort, input_columns='foo',num_proc=10)\r\n7.23 s ± 154 ms per loop (mean ± std. dev. of 7 runs, 1 loop each\r\n```",
"any updates on this issue? \r\nI'm using `datasets=2.12.0`. Adding `num_proc` to the mapping function makes it at least 5x slower than using a single process.",
"What kind of function are you passing to `map` ? How many CPUs do you have and what did you set for `num_proc` ?"
] | 2021-03-05T02:10:02 | 2023-06-08T12:31:55 | null |
NONE
| null | null | null |
Hi, thank you for the great library.
I've been using datasets to pretrain language models, and it often involves datasets as large as ~70G.
My data preparation step is roughly two steps: `load_dataset` which splits corpora into a table of sentences, and `map` converts a sentence into a list of integers, using a tokenizer.
I noticed that `map` function with `num_proc=mp.cpu_count() //2` takes more than 20 hours to finish the job where as `num_proc=1` gets the job done in about 5 hours. The machine I used has 40 cores, with 126G of RAM. There were no other jobs when `map` function was running.
What could be the reason? I would be happy to provide information necessary to spot the reason.
p.s. I was experiencing the imbalance issue mentioned in [here](https://github.com/huggingface/datasets/issues/610#issuecomment-705177036) when I was using multi processing.
p.s.2 When I run `map` with `num_proc=1`, I see one tqdm bar but all the cores are working. When `num_proc=20`, only 20 cores work.
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OSError: Memory mapping file failed: Cannot allocate memory
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[
"Do you think this is trying to bring the dataset into memory and if I can avoid it to save on memory so it only brings a batch into memory? @lhoestq thank you",
"It's not trying to bring the dataset into memory.\r\n\r\nActually, it's trying to memory map the dataset file, which is different. It allows to load large dataset files without filling up memory.\r\n\r\nWhat dataset did you use to get this error ?\r\nOn what OS are you running ? What's your python and pyarrow version ?",
"Dear @lhoestq \r\nthank you so much for coming back to me. Please find info below:\r\n1) Dataset name: I used wikipedia with config 20200501.en\r\n2) I got these pyarrow in my environment:\r\npyarrow 2.0.0 <pip>\r\npyarrow 3.0.0 <pip>\r\n\r\n3) python version 3.7.10\r\n4) OS version \r\n\r\nlsb_release -a\r\nNo LSB modules are available.\r\nDistributor ID:\tDebian\r\nDescription:\tDebian GNU/Linux 10 (buster)\r\nRelease:\t10\r\nCodename:\tbuster\r\n\r\n\r\nIs there a way I could solve the memory issue and if I could run this model, I am using GeForce GTX 108, \r\nthanks \r\n",
"I noticed that the error happens when loading the validation dataset.\r\nWhat value of `data_args.validation_split_percentage` did you use ?",
"Dear @lhoestq \r\n\r\nthank you very much for the very sharp observation, indeed, this happens there, I use the default value of 5, I basically plan to subsample a part of the large dataset and choose it as validation set. Do you think this is bringing the data into memory during subsampling? Is there a way I could avoid this?\r\n\r\nThank you very much for the great help.\r\n\r\n\r\nOn Mon, Mar 8, 2021 at 11:28 AM Quentin Lhoest ***@***.***>\r\nwrote:\r\n\r\n> I noticed that the error happens when loading the validation dataset.\r\n> What value of data_args.validation_split_percentage did you use ?\r\n>\r\n> —\r\n> You are receiving this because you authored the thread.\r\n> Reply to this email directly, view it on GitHub\r\n> <https://github.com/huggingface/datasets/issues/1990#issuecomment-792655644>,\r\n> or unsubscribe\r\n> <https://github.com/notifications/unsubscribe-auth/AS37NMS337ZUJ7HGGVVCCR3TCSREFANCNFSM4YTYAQ2A>\r\n> .\r\n>\r\n",
"Methods like `dataset.shard`, `dataset.train_test_split`, `dataset.select` etc. don't bring the dataset in memory. \r\nThe only time when samples are brought to memory is when you access elements via `dataset[0]`, `dataset[:10]`, `dataset[\"my_column_names\"]`.\r\n\r\nBut it's possible that trying to use those methods to build your validation set doesn't fix the issue since, if I understand correctly, the error happens when when the dataset arrow file is opened (just before the 5% percentage is applied).\r\n\r\nDid you try to reproduce this issue in a google colab ? This would be super helpful to investigate why this happened.\r\n\r\nAlso maybe you can try clearing your cache at `~/.cache/huggingface/datasets` and try again. If the arrow file was corrupted somehow, removing it and rebuilding may fix the issue."
] | 2021-03-04T18:21:58 | 2021-08-04T18:04:25 | 2021-08-04T18:04:25 |
NONE
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Hi,
I am trying to run a code with a wikipedia dataset, here is the command to reproduce the error. You can find the codes for run_mlm.py in huggingface repo here: https://github.com/huggingface/transformers/blob/v4.3.2/examples/language-modeling/run_mlm.py
```
python run_mlm.py --model_name_or_path bert-base-multilingual-cased --dataset_name wikipedia --dataset_config_name 20200501.en --do_train --do_eval --output_dir /dara/test --max_seq_length 128
```
I am using transformer version: 4.3.2
But I got memory erorr using this dataset, is there a way I could save on memory with dataset library with wikipedia dataset?
Specially I need to train a model with multiple of wikipedia datasets concatenated. thank you very much @lhoestq for your help and suggestions:
```
File "run_mlm.py", line 441, in <module>
main()
File "run_mlm.py", line 233, in main
split=f"train[{data_args.validation_split_percentage}%:]",
File "/dara/libs/anaconda3/envs/code/lib/python3.7/site-packages/datasets-1.3.0-py3.7.egg/datasets/load.py", line 750, in load_dataset
ds = builder_instance.as_dataset(split=split, ignore_verifications=ignore_verifications, in_memory=keep_in_memory)
File "/dara/libs/anaconda3/envs/code/lib/python3.7/site-packages/datasets-1.3.0-py3.7.egg/datasets/builder.py", line 740, in as_dataset
map_tuple=True,
File "/dara/libs/anaconda3/envs/code/lib/python3.7/site-packages/datasets-1.3.0-py3.7.egg/datasets/utils/py_utils.py", line 225, in map_nested
return function(data_struct)
File "/dara/libs/anaconda3/envs/code/lib/python3.7/site-packages/datasets-1.3.0-py3.7.egg/datasets/builder.py", line 757, in _build_single_dataset
in_memory=in_memory,
File "/dara/libs/anaconda3/envs/code/lib/python3.7/site-packages/datasets-1.3.0-py3.7.egg/datasets/builder.py", line 829, in _as_dataset
in_memory=in_memory,
File "/dara/libs/anaconda3/envs/code/lib/python3.7/site-packages/datasets-1.3.0-py3.7.egg/datasets/arrow_reader.py", line 215, in read
return self.read_files(files=files, original_instructions=instructions, in_memory=in_memory)
File "/dara/libs/anaconda3/envs/code/lib/python3.7/site-packages/datasets-1.3.0-py3.7.egg/datasets/arrow_reader.py", line 236, in read_files
pa_table = self._read_files(files, in_memory=in_memory)
File "/dara/libs/anaconda3/envs/code/lib/python3.7/site-packages/datasets-1.3.0-py3.7.egg/datasets/arrow_reader.py", line 171, in _read_files
pa_table: pa.Table = self._get_dataset_from_filename(f_dict, in_memory=in_memory)
File "/dara/libs/anaconda3/envs/code/lib/python3.7/site-packages/datasets-1.3.0-py3.7.egg/datasets/arrow_reader.py", line 302, in _get_dataset_from_filename
pa_table = ArrowReader.read_table(filename, in_memory=in_memory)
File "/dara/libs/anaconda3/envs/code/lib/python3.7/site-packages/datasets-1.3.0-py3.7.egg/datasets/arrow_reader.py", line 322, in read_table
stream = stream_from(filename)
File "pyarrow/io.pxi", line 782, in pyarrow.lib.memory_map
File "pyarrow/io.pxi", line 743, in pyarrow.lib.MemoryMappedFile._open
File "pyarrow/error.pxi", line 122, in pyarrow.lib.pyarrow_internal_check_status
File "pyarrow/error.pxi", line 99, in pyarrow.lib.check_status
OSError: Memory mapping file failed: Cannot allocate memory
```
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Question/problem with dataset labels
|
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[
"It seems that I get parsing errors for various fields in my data. For example now I get this:\r\n```\r\n File \"../../../models/tr-4.3.2/run_puppets.py\", line 523, in <module>\r\n main()\r\n File \"../../../models/tr-4.3.2/run_puppets.py\", line 249, in main\r\n datasets = load_dataset(\"csv\", data_files=data_files)\r\n File \"/dccstor/redrug_ier/envs/last-tr/lib/python3.8/site-packages/datasets/load.py\", line 740, in load_dataset\r\n builder_instance.download_and_prepare(\r\n File \"/dccstor/redrug_ier/envs/last-tr/lib/python3.8/site-packages/datasets/builder.py\", line 572, in download_and_prepare\r\n self._download_and_prepare(\r\n File \"/dccstor/redrug_ier/envs/last-tr/lib/python3.8/site-packages/datasets/builder.py\", line 650, in _download_and_prepare\r\n self._prepare_split(split_generator, **prepare_split_kwargs)\r\n File \"/dccstor/redrug_ier/envs/last-tr/lib/python3.8/site-packages/datasets/builder.py\", line 1028, in _prepare_split\r\n writer.write_table(table)\r\n File \"/dccstor/redrug_ier/envs/last-tr/lib/python3.8/site-packages/datasets/arrow_writer.py\", line 292, in write_table\r\n pa_table = pa_table.cast(self._schema)\r\n File \"pyarrow/table.pxi\", line 1311, in pyarrow.lib.Table.cast\r\n File \"pyarrow/table.pxi\", line 265, in pyarrow.lib.ChunkedArray.cast\r\n File \"/dccstor/redrug_ier/envs/last-tr/lib/python3.8/site-packages/pyarrow/compute.py\", line 87, in cast\r\n return call_function(\"cast\", [arr], options)\r\n File \"pyarrow/_compute.pyx\", line 298, in pyarrow._compute.call_function\r\n File \"pyarrow/_compute.pyx\", line 192, in pyarrow._compute.Function.call\r\n File \"pyarrow/error.pxi\", line 122, in pyarrow.lib.pyarrow_internal_check_status\r\n File \"pyarrow/error.pxi\", line 84, in pyarrow.lib.check_status\r\npyarrow.lib.ArrowInvalid: Failed to parse string: https://www.netgalley.com/catalog/book/121872\r\n```",
"Not sure if this helps, this is how I load my files (as in the sample scripts on transformers):\r\n\r\n```\r\n if data_args.train_file.endswith(\".csv\"):\r\n # Loading a dataset from local csv files\r\n datasets = load_dataset(\"csv\", data_files=data_files)\r\n```",
"Since this worked out of the box in a few examples before, I wonder if it's some quoting issue or something else. ",
"Hi @ioana-blue,\r\nCan you share a sample from your .csv? A dummy where you get this error will also help.\r\n\r\nI tried this csv:\r\n```csv\r\nfeature,label\r\n1.2,not nurse\r\n1.3,nurse\r\n1.5,surgeon\r\n```\r\nand the following snippet:\r\n```python\r\nfrom datasets import load_dataset\r\n\r\nd = load_dataset(\"csv\",data_files=['test.csv'])\r\n\r\nprint(d)\r\nprint(d['train']['label'])\r\n```\r\nand this works perfectly fine for me:\r\n```sh\r\nDatasetDict({\r\n train: Dataset({\r\n features: ['feature', 'label'],\r\n num_rows: 3\r\n })\r\n})\r\n['not nurse', 'nurse', 'surgeon']\r\n```\r\nI'm sure your csv is more complicated than this one. But it is hard to tell where the issue might be without looking at a sample.",
"I've had versions where it worked fain. For this dataset, I had all kind of parsing issues that I couldn't understand. What I ended up doing is strip all the columns that I didn't need and also make the label 0/1. \r\n\r\nI think one line that may have caused a problem was the csv version of this:\r\n\r\n```crawl-data/CC-MAIN-2017-47/segments/1510934806225.78/wet/CC-MAIN-20171120203833-20171120223833-00571.warc.wet.gz Rose Blakey is an aspiring journalist. She is desperate to escape the from the small Australian town in which she lives. Rejection after rejection mean she is stuck in what she sees as a dead-end waitressing job. ^M ('Rose', '', 'Blakey') journalist F 38 journalist https://www.netgalley.com/catalog/book/121872 _ is desperate to escape the from the small Australian town in which _ lives. Rejection after rejection mean _ is stuck in what _ sees as a dead-end waitressing job. She is desperate to escape the from the small Australian town in which she lives. Rejection after rejection mean she is stuck in what she sees as a dead-end waitressing job.```\r\n\r\nThe error I got in this case is this one: https://github.com/huggingface/datasets/issues/1989#issuecomment-790842771\r\n\r\nNote, this line was part of a much larger file and until this line I guess it was working fine. ",
"Hi @ioana-blue,\r\n\r\nWhat is the separator you're using for the csv? I see there are only two commas in the given line, but they don't seem like appropriate points. Also, is this a string part of one line, or an entire line? There should also be a label, right?",
"Sorry for the confusion, the sample above was from a tsv that was used to derive the csv. Let me construct the csv again (I had remove it). \r\n\r\nThis is the line in the csv - this is the whole line:\r\n```crawl-data/CC-MAIN-2017-47/segments/1510934806225.78/wet/CC-MAIN-20171120203833-20171120223833-00571.warc.wet.gz,Rose Blakey is an aspiring journalist. She is desperate to escape the from the small Australian town in which she lives. Rejection after rejection mean she is stuck in what she sees as a dead,\"('Rose', '', 'Blakey')\",journalist,F,38,journalist,https://www.netgalley.com/catalog/book/121872,_ is desperate to escape the from the small Australian town in which _ lives. Rejection after rejection mean _ is stuck in what _ sees as a dead-end waitressing job., She is desperate to escape the from the small Australian town in which she lives. Rejection after rejection mean she is stuck in what she sees as a dead-end waitressing job.```",
"Hi,\r\nJust in case you want to use tsv directly, you can use the separator argument while loading the dataset.\r\n```python\r\nd = load_dataset(\"csv\",data_files=['test.csv'],sep=\"\\t\")\r\n```\r\n\r\nAdditionally, I don't face the issues with the following csv (same as the one you provided):\r\n\r\n```sh\r\nlink1,text1,info1,info2,info3,info4,info5,link2,text2,text3\r\ncrawl-data/CC-MAIN-2017-47/segments/1510934806225.78/wet/CC-MAIN-20171120203833-20171120223833-00571.warc.wet.gz,Rose Blakey is an aspiring journalist. She is desperate to escape the from the small Australian town in which she lives. Rejection after rejection mean she is stuck in what she sees as a dead,\"('Rose', '', 'Blakey')\",journalist,F,38,journalist,https://www.netgalley.com/catalog/book/121872,_ is desperate to escape the from the small Australian town in which _ lives. Rejection after rejection mean _ is stuck in what _ sees as a dead-end waitressing job., She is desperate to escape the from the small Australian town in which she lives. Rejection after rejection mean she is stuck in what she sees as a dead-end waitressing job.\r\n```\r\nOutput after loading:\r\n```sh\r\n{'link1': 'crawl-data/CC-MAIN-2017-47/segments/1510934806225.78/wet/CC-MAIN-20171120203833-20171120223833-00571.warc.wet.gz', 'text1': 'Rose Blakey is an aspiring journalist. She is desperate to escape the from the small Australian town in which she lives. Rejection after rejection mean she is stuck in what she sees as a dead', 'info1': \"('Rose', '', 'Blakey')\", 'info2': 'journalist', 'info3': 'F', 'info4': 38, 'info5': 'journalist', 'link2': 'https://www.netgalley.com/catalog/book/121872', 'text2': '_ is desperate to escape the from the small Australian town in which _ lives. Rejection after rejection mean _ is stuck in what _ sees as a dead-end waitressing job.', 'text3': ' She is desperate to escape the from the small Australian town in which she lives. Rejection after rejection mean she is stuck in what she sees as a dead-end waitressing job.'}\r\n```\r\nCan you check once if the tsv works for you directly using the separator argument? The conversion from tsv to csv could create issues, I'm only guessing though.",
"thanks for the tip. very strange :/ I'll check my datasets version as well. \r\n\r\nI will have more similar experiments soon so I'll let you know if I manage to get rid of this. ",
"No problem at all. I thought I'd be able to solve this but I'm unable to replicate the issue :/"
] | 2021-03-04T17:06:53 | 2023-07-24T14:39:33 | 2023-07-24T14:39:33 |
NONE
| null | null | null |
Hi, I'm using a dataset with two labels "nurse" and "not nurse". For whatever reason (that I don't understand), I get an error that I think comes from the datasets package (using csv). Everything works fine if the labels are "nurse" and "surgeon".
This is the trace I get:
```
File "../../../models/tr-4.3.2/run_puppets.py", line 523, in <module>
main()
File "../../../models/tr-4.3.2/run_puppets.py", line 249, in main
datasets = load_dataset("csv", data_files=data_files)
File "/dccstor/redrug_ier/envs/last-tr/lib/python3.8/site-packages/datasets/load.py", line 740, in load_dataset
builder_instance.download_and_prepare(
File "/dccstor/redrug_ier/envs/last-tr/lib/python3.8/site-packages/datasets/builder.py", line 572, in download_and_prepare
self._download_and_prepare(
File "/dccstor/redrug_ier/envs/last-tr/lib/python3.8/site-packages/datasets/builder.py", line 650, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/dccstor/redrug_ier/envs/last-tr/lib/python3.8/site-packages/datasets/builder.py", line 1028, in _prepare_split
writer.write_table(table)
File "/dccstor/redrug_ier/envs/last-tr/lib/python3.8/site-packages/datasets/arrow_writer.py", line 292, in write_table
pa_table = pa_table.cast(self._schema)
File "pyarrow/table.pxi", line 1311, in pyarrow.lib.Table.cast
File "pyarrow/table.pxi", line 265, in pyarrow.lib.ChunkedArray.cast
File "/dccstor/redrug_ier/envs/last-tr/lib/python3.8/site-packages/pyarrow/compute.py", line 87, in cast
return call_function("cast", [arr], options)
File "pyarrow/_compute.pyx", line 298, in pyarrow._compute.call_function
File "pyarrow/_compute.pyx", line 192, in pyarrow._compute.Function.call
File "pyarrow/error.pxi", line 122, in pyarrow.lib.pyarrow_internal_check_status
File "pyarrow/error.pxi", line 84, in pyarrow.lib.check_status
pyarrow.lib.ArrowInvalid: Failed to parse string: not nurse
```
Any ideas how to fix this? For now, I'll probably make them numeric.
|
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MDU6SXNzdWU4MjIzMjQ2MDU=
| 1,988 |
Readme.md is misleading about kinds of datasets?
|
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[
"Hi ! Yes it's possible to use image data. There are already a few of them available (MNIST, CIFAR..)"
] | 2021-03-04T17:04:20 | 2021-08-04T18:05:23 | 2021-08-04T18:05:23 |
NONE
| null | null | null |
Hi!
At the README.MD, you say: "efficient data pre-processing: simple, fast and reproducible data pre-processing for the above public datasets as well as your own local datasets in CSV/JSON/text. "
But here:
https://github.com/huggingface/datasets/blob/master/templates/new_dataset_script.py#L82-L117
You mention other kinds of datasets, with images and so on. I'm confused.
Is it possible to use it to store, say, imagenet locally?
|
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| 822,308,956 |
MDU6SXNzdWU4MjIzMDg5NTY=
| 1,987 |
wmt15 is broken
|
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[
"It's reachable for the viewer and me, so I suppose it was down at that moment?"
] | 2021-03-04T16:46:25 | 2022-10-05T13:12:26 | 2022-10-05T13:12:26 |
CONTRIBUTOR
| null | null | null |
While testing the hotfix, I tried a random other wmt release and found wmt15 to be broken:
```
python -c 'from datasets import load_dataset; load_dataset("wmt15", "de-en")'
Downloading: 2.91kB [00:00, 818kB/s]
Downloading: 3.02kB [00:00, 897kB/s]
Downloading: 41.1kB [00:00, 19.1MB/s]
Downloading and preparing dataset wmt15/de-en (download: Unknown size, generated: Unknown size, post-processed: Unknown size, total: Unknown size) to /home/stas/.cache/huggingface/datasets/wmt15/de-en/1.0.0/39ad5f9262a0910a8ad7028ad432731ad23fdf91f2cebbbf2ba4776b9859e87f...
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/home/stas/anaconda3/envs/main-38/lib/python3.8/site-packages/datasets/load.py", line 740, in load_dataset
builder_instance.download_and_prepare(
File "/home/stas/anaconda3/envs/main-38/lib/python3.8/site-packages/datasets/builder.py", line 578, in download_and_prepare
self._download_and_prepare(
File "/home/stas/anaconda3/envs/main-38/lib/python3.8/site-packages/datasets/builder.py", line 634, in _download_and_prepare
split_generators = self._split_generators(dl_manager, **split_generators_kwargs)
File "/home/stas/.cache/huggingface/modules/datasets_modules/datasets/wmt15/39ad5f9262a0910a8ad7028ad432731ad23fdf91f2cebbbf2ba4776b9859e87f/wmt_utils.py", line 757, in _split_generators
downloaded_files = dl_manager.download_and_extract(urls_to_download)
File "/home/stas/anaconda3/envs/main-38/lib/python3.8/site-packages/datasets/utils/download_manager.py", line 283, in download_and_extract
return self.extract(self.download(url_or_urls))
File "/home/stas/anaconda3/envs/main-38/lib/python3.8/site-packages/datasets/utils/download_manager.py", line 191, in download
downloaded_path_or_paths = map_nested(
File "/home/stas/anaconda3/envs/main-38/lib/python3.8/site-packages/datasets/utils/py_utils.py", line 203, in map_nested
mapped = [
File "/home/stas/anaconda3/envs/main-38/lib/python3.8/site-packages/datasets/utils/py_utils.py", line 204, in <listcomp>
_single_map_nested((function, obj, types, None, True)) for obj in tqdm(iterable, disable=disable_tqdm)
File "/home/stas/anaconda3/envs/main-38/lib/python3.8/site-packages/datasets/utils/py_utils.py", line 160, in _single_map_nested
mapped = [_single_map_nested((function, v, types, None, True)) for v in pbar]
File "/home/stas/anaconda3/envs/main-38/lib/python3.8/site-packages/datasets/utils/py_utils.py", line 160, in <listcomp>
mapped = [_single_map_nested((function, v, types, None, True)) for v in pbar]
File "/home/stas/anaconda3/envs/main-38/lib/python3.8/site-packages/datasets/utils/py_utils.py", line 142, in _single_map_nested
return function(data_struct)
File "/home/stas/anaconda3/envs/main-38/lib/python3.8/site-packages/datasets/utils/download_manager.py", line 214, in _download
return cached_path(url_or_filename, download_config=download_config)
File "/home/stas/anaconda3/envs/main-38/lib/python3.8/site-packages/datasets/utils/file_utils.py", line 274, in cached_path
output_path = get_from_cache(
File "/home/stas/anaconda3/envs/main-38/lib/python3.8/site-packages/datasets/utils/file_utils.py", line 614, in get_from_cache
raise FileNotFoundError("Couldn't find file at {}".format(url))
FileNotFoundError: Couldn't find file at https://huggingface.co/datasets/wmt/wmt15/resolve/main/training-parallel-nc-v10.tgz
```
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wmt datasets fail to load
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[
"caching issue, seems to work again.."
] | 2021-03-04T14:18:55 | 2021-03-04T14:31:07 | 2021-03-04T14:31:07 |
NONE
| null | null | null |
~\.cache\huggingface\modules\datasets_modules\datasets\wmt14\43e717d978d2261502b0194999583acb874ba73b0f4aed0ada2889d1bb00f36e\wmt_utils.py in _split_generators(self, dl_manager)
758 # Extract manually downloaded files.
759 manual_files = dl_manager.extract(manual_paths_dict)
--> 760 extraction_map = dict(downloaded_files, **manual_files)
761
762 for language in self.config.language_pair:
TypeError: type object argument after ** must be a mapping, not list
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| 1,984 |
Add tests for WMT datasets
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[
"Dummy data generation is deprecated now. Closing."
] | 2021-03-04T06:46:42 | 2022-11-04T14:19:16 | 2022-11-04T14:19:16 |
MEMBER
| null | null | null |
As requested in #1981, we need tests for WMT datasets, using dummy data.
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The size of CoNLL-2003 is not consistant with the official release.
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[
"Hi,\r\n\r\nif you inspect the raw data, you can find there are 946 occurrences of `-DOCSTART- -X- -X- O` in the train split and `14041 + 946 = 14987`, which is exactly the number of sentences the authors report. `-DOCSTART-` is a special line that acts as a boundary between two different documents and is filtered out in our implementation.\r\n\r\n@lhoestq What do you think about including these lines? ([Link](https://github.com/flairNLP/flair/issues/1097) to a similar issue in the flairNLP repo)",
"We should mention in the Conll2003 dataset card that these lines have been removed indeed.\r\n\r\nIf some users are interested in using these lines (maybe to recombine documents ?) then we can add a parameter to the conll2003 dataset to include them.\r\n\r\nBut IMO the default config should stay the current one (without the `-DOCSTART-` stuff), so that you can directly train NER models without additional preprocessing. Let me know what you think",
"@lhoestq Yes, I agree adding a small note should be sufficient.\r\n\r\nCurrently, NLTK's `ConllCorpusReader` ignores the `-DOCSTART-` lines so I think it's ok if we do the same. If there is an interest in the future to use these lines, then we can include them.",
"I added a mention of this in conll2003's dataset card:\r\nhttps://github.com/huggingface/datasets/blob/fc9796920da88486c3b97690969aabf03d6b4088/datasets/conll2003/README.md#conll2003\r\n\r\nEdit: just saw your PR @mariosasko (noticed it too late ^^)\r\nLet me take a look at it :)"
] | 2021-03-04T04:41:34 | 2022-10-05T13:13:26 | 2022-10-05T13:13:26 |
NONE
| null | null | null |
Thanks for the dataset sharing! But when I use conll-2003, I meet some questions.
The statistics of conll-2003 in this repo is :
\#train 14041 \#dev 3250 \#test 3453
While the official statistics is:
\#train 14987 \#dev 3466 \#test 3684
Wish for your reply~
|
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[
"@stas00 Mea culpa... May I fix this tomorrow morning?",
"yes, of course, I reverted to the version before that and it works ;)\r\n\r\nbut since a new release was just made you will probably need to make a hotfix.\r\n\r\nand add the wmt to the tests?",
"Sure, I will implement a regression test!",
"@stas00 it is fixed. @lhoestq are you releasing the hot fix or would you prefer me to do it?",
"I'll do a patch release for this issue early tomorrow.\r\n\r\nAnd yes we absolutly need tests for the wmt datasets: The missing tests for wmt are an artifact from the early development of the lib but now we have tools to generate automatically the dummy data used for tests :)",
"still facing the same issue or similar:\r\nfrom datasets import load_dataset\r\nwtm14_test = load_dataset('wmt14',\"de-en\",cache_dir='./datasets')\r\n\r\n~.cache\\huggingface\\modules\\datasets_modules\\datasets\\wmt14\\43e717d978d2261502b0194999583acb874ba73b0f4aed0ada2889d1bb00f36e\\wmt_utils.py in _split_generators(self, dl_manager)\r\n758 # Extract manually downloaded files.\r\n759 manual_files = dl_manager.extract(manual_paths_dict)\r\n--> 760 extraction_map = dict(downloaded_files, **manual_files)\r\n761\r\n762 for language in self.config.language_pair:\r\n\r\nTypeError: type object argument after ** must be a mapping, not list"
] | 2021-03-03T19:21:39 | 2021-03-04T14:16:47 | 2021-03-03T22:48:36 |
CONTRIBUTOR
| null | null | null |
on master:
```
python -c 'from datasets import load_dataset; load_dataset("wmt14", "de-en")'
Downloading and preparing dataset wmt14/de-en (download: Unknown size, generated: Unknown size, post-processed: Unknown size, total: Unknown size) to /home/stas/.cache/huggingface/datasets/wmt14/de-en/1.0.0/43e717d978d2261502b0194999583acb874ba73b0f4aed0ada2889d1bb00f36e...
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/mnt/nvme1/code/huggingface/datasets-master/src/datasets/load.py", line 740, in load_dataset
builder_instance.download_and_prepare(
File "/mnt/nvme1/code/huggingface/datasets-master/src/datasets/builder.py", line 578, in download_and_prepare
self._download_and_prepare(
File "/mnt/nvme1/code/huggingface/datasets-master/src/datasets/builder.py", line 634, in _download_and_prepare
split_generators = self._split_generators(dl_manager, **split_generators_kwargs)
File "/home/stas/.cache/huggingface/modules/datasets_modules/datasets/wmt14/43e717d978d2261502b0194999583acb874ba73b0f4aed0ada2889d1bb00f36e/wmt_utils.py", line 760, in _split_generators
extraction_map = dict(downloaded_files, **manual_files)
```
it worked fine recently. same problem if I try wmt16.
git bisect points to this commit from Feb 25 as the culprit https://github.com/huggingface/datasets/commit/792f1d9bb1c5361908f73e2ef7f0181b2be409fa
@albertvillanova
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ModuleNotFoundError: No module named 'apache_beam' for wikipedia datasets
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[
"I sometimes also get this error with other languages of the same dataset:\r\n\r\n File \"/dara/libs/anaconda3/envs/code/lib/python3.7/site-packages/datasets-1.3.0-py3.7.egg/datasets/arrow_reader.py\", line 322, in read_table\r\n stream = stream_from(filename)\r\n File \"pyarrow/io.pxi\", line 782, in pyarrow.lib.memory_map\r\n File \"pyarrow/io.pxi\", line 743, in pyarrow.lib.MemoryMappedFile._open\r\n File \"pyarrow/error.pxi\", line 122, in pyarrow.lib.pyarrow_internal_check_status\r\n File \"pyarrow/error.pxi\", line 99, in pyarrow.lib.check_status\r\nOSError: Memory mapping file failed: Cannot allocate memory\r\n\r\n@lhoestq \r\n",
"Hi ! Thanks for reporting\r\nSome wikipedia configurations do require the user to have `apache_beam` in order to parse the wikimedia data.\r\n\r\nOn the other hand regarding your second issue\r\n```\r\nOSError: Memory mapping file failed: Cannot allocate memory\r\n```\r\nI've never experienced this, can you open a new issue for this specific error and provide more details please ?\r\nFor example what script did you use to get this, what language did you use, what's your environment details (os, python version, pyarrow version).."
] | 2021-03-02T19:21:28 | 2021-03-03T10:17:40 | null |
NONE
| null | null | null |
Hi
I am trying to run run_mlm.py code [1] of huggingface with following "wikipedia"/ "20200501.aa" dataset:
`python run_mlm.py --model_name_or_path bert-base-multilingual-cased --dataset_name wikipedia --dataset_config_name 20200501.aa --do_train --do_eval --output_dir /tmp/test-mlm --max_seq_length 256
`
I am getting this error, but as per documentation, huggingface dataset provide processed version of this dataset and users can load it without requiring setup extra settings for apache-beam. could you help me please to load this dataset?
Do you think I can run run_ml.py with this dataset? or anyway I could subsample and train the model? I greatly appreciate providing the processed version of all languages for this dataset, which allow the user to use them without setting up apache-beam,. thanks
I really appreciate your help.
@lhoestq
thanks.
[1] https://github.com/huggingface/transformers/blob/master/examples/language-modeling/run_mlm.py
error I get:
```
>>> import datasets
>>> datasets.load_dataset("wikipedia", "20200501.aa")
Downloading and preparing dataset wikipedia/20200501.aa (download: Unknown size, generated: Unknown size, post-processed: Unknown size, total: Unknown size) to /dara/temp/cache_home_2/datasets/wikipedia/20200501.aa/1.0.0/4021357e28509391eab2f8300d9b689e7e8f3a877ebb3d354b01577d497ebc63...
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/dara/temp/libs/anaconda3/envs/codes/lib/python3.7/site-packages/datasets-1.3.0-py3.7.egg/datasets/load.py", line 746, in load_dataset
use_auth_token=use_auth_token,
File "/dara/temp/libs/anaconda3/envs/codes/lib/python3.7/site-packages/datasets-1.3.0-py3.7.egg/datasets/builder.py", line 573, in download_and_prepare
dl_manager=dl_manager, verify_infos=verify_infos, **download_and_prepare_kwargs
File "/dara/temp/libs/anaconda3/envs/codes/lib/python3.7/site-packages/datasets-1.3.0-py3.7.egg/datasets/builder.py", line 1099, in _download_and_prepare
import apache_beam as beam
ModuleNotFoundError: No module named 'apache_beam'
```
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Question: what gets stored in the datasets cache and why is it so huge?
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"Echo'ing this observation: I have a few datasets in the neighborhood of 2GB CSVs uncompressed, and when I use something like `Dataset.save_to_disk()` it's ~18GB on disk.\r\n\r\nIf this is unexpected behavior, would be happy to help run debugging as needed.",
"Thanks @ioana-blue for pointing out this problem (and thanks also @justin-yan). You are right that current implementation of the datasets caching files take too much memory. We are definitely changing this and optimizing the defaults, so that the file sizes are considerably reduced. I will come back to you as soon as this is fixed.",
"Thank you! Also I noticed that the files don't seem to be cleaned after the jobs finish. Last night I had only 3 jobs running, but the cache was still at 180GB. ",
"And to clarify, it's not memory, it's disk space. Thank you!",
"Hi ! As Albert said they can sometimes take more space that expected but we'll fix that soon.\r\n\r\nAlso, to give more details about caching: computations on a dataset are cached by default so that you don't have to recompute them the next time you run them.\r\n\r\nSo by default the cache files stay on your disk when you job is finished (so that if you re-execute it, it will be reloaded from the cache).\r\nFeel free to clear your cache after your job has finished, or disable caching using\r\n```python\r\nimport datasets\r\n\r\ndatasets.set_caching_enabled(False)\r\n```",
"Thanks for the tip, this is useful. ",
"Hi @ioana-blue, we have optimized Datasets' disk usage in the latest release v1.5.\r\n\r\nFeel free to update your Datasets version\r\n```shell\r\npip install -U datasets\r\n```\r\nand see if it better suits your needs.",
"Thank you!"
] | 2021-03-02T14:35:53 | 2021-03-30T14:03:59 | 2021-03-16T09:44:00 |
NONE
| null | null | null |
I'm running several training jobs (around 10) with a relatively large dataset (3M samples). The datasets cache reached 178G and it seems really large. What is it stored in there and why is it so large? I don't think I noticed this problem before and seems to be related to the new version of the datasets library. Any insight? Thank you!
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'Dataset' object has no attribute 'rename_column'
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"Hi ! `rename_column` has been added recently and will be available in the next release"
] | 2021-03-02T08:01:49 | 2022-06-01T16:08:47 | 2022-06-01T16:08:47 |
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'Dataset' object has no attribute 'rename_column'
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Can we parallelized the add_faiss_index process over dataset shards ?
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"Hi !\r\nAs far as I know not all faiss indexes can be computed in parallel and then merged. \r\nFor example [here](https://github.com/facebookresearch/faiss/wiki/Special-operations-on-indexes#splitting-and-merging-indexes) is is mentioned that only IndexIVF indexes can be merged.\r\nMoreover faiss already works using multithreading to parallelize the workload over your different CPU cores. You can find more info [here](https://github.com/facebookresearch/faiss/wiki/Threads-and-asynchronous-calls#internal-threading)\r\nSo I feel like the gains we would get by implementing a parallel `add_faiss_index` would not be that important, but let me know what you think.\r\n",
"Actually, you are right. I also had the same idea. I am trying this in the context of end-ton-end retrieval training in RAG. So far I have parallelized the embedding re-computation within the training loop by using datasets shards. \r\n\r\nThen I was thinking of can I calculate the indexes for each shard and combined them with **concatenate** before I save.",
"@lhoestq As you mentioned faiss is already using multiprocessing. I tried to do the add_index with faiss for a dataset object inside a RAY actor and the process became very slow... if fact it takes so much time. It is because a ray actor comes with a single CPU core unless we assign it more. I also tried assigning more cores but still running add_index in the main process is very fast. "
] | 2021-03-01T12:47:34 | 2021-03-04T19:40:56 | 2021-03-04T19:40:42 |
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I am thinking of making the **add_faiss_index** process faster. What if we run the add_faiss_index process on separate dataset shards and then combine them before (dataset.concatenate) saving the faiss.index file ?
I feel theoretically this will reduce the accuracy of retrieval since it affects the indexing process.
@lhoestq
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Datasets.py function load_dataset does not match squad dataset
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"Hi !\r\n\r\nTo fix 1, an you try to run this code ?\r\n```python\r\nfrom datasets import load_dataset\r\n\r\nload_dataset(\"squad\", download_mode=\"force_redownload\")\r\n```\r\nMaybe the file your downloaded was corrupted, in this case redownloading this way should fix your issue 1.\r\n\r\nRegarding your 2nd point, you're right that loading the raw json this way doesn't give you a dataset with the column \"context\", \"question\" and \"answers\". Indeed the squad format is a very nested format so you have to preprocess the data. You can do it this way:\r\n```python\r\ndef process_squad(examples):\r\n \"\"\"\r\n Process a dataset in the squad format with columns \"title\" and \"paragraphs\"\r\n to return the dataset with columns \"context\", \"question\" and \"answers\".\r\n \"\"\"\r\n out = {\"context\": [], \"question\": [], \"answers\":[]} \r\n for paragraphs in examples[\"paragraphs\"]: \r\n for paragraph in paragraphs: \r\n for qa in paragraph[\"qas\"]: \r\n answers = [{\"answer_start\": answer[\"answer_start\"], \"text\": answer[\"text\"].strip()} for answer in qa[\"answers\"]] \r\n out[\"context\"].append(paragraph[\"context\"].strip()) \r\n out[\"question\"].append(qa[\"question\"].strip()) \r\n out[\"answers\"].append(answers) \r\n return out\r\n\r\ndatasets = load_dataset(extension, data_files=data_files, field=\"data\")\r\ncolumn_names = datasets[\"train\"].column_names\r\n\r\nif set(column_names) == {\"title\", \"paragraphs\"}:\r\n datasets = datasets.map(process_squad, batched=True, remove_columns=column_names)\r\n```\r\n\r\nHope that helps :)",
"Thks for quickly answering！\r\n### 1 I try the first way,but seems not work \r\n```\r\nTraceback (most recent call last):\r\n File \"examples/question-answering/run_qa.py\", line 503, in <module>\r\n main()\r\n File \"examples/question-answering/run_qa.py\", line 218, in main\r\n datasets = load_dataset(data_args.dataset_name, download_mode=\"force_redownload\")\r\n File \"/home2/zhenggo1/anaconda3/envs/lpot/lib/python3.7/site-packages/datasets/load.py\", line 746, in load_dataset\r\n use_auth_token=use_auth_token,\r\n File \"/home2/zhenggo1/anaconda3/envs/lpot/lib/python3.7/site-packages/datasets/builder.py\", line 573, in download_and_prepare\r\n dl_manager=dl_manager, verify_infos=verify_infos, **download_and_prepare_kwargs\r\n File \"/home2/zhenggo1/anaconda3/envs/lpot/lib/python3.7/site-packages/datasets/builder.py\", line 633, in _download_and_prepare\r\n self.info.download_checksums, dl_manager.get_recorded_sizes_checksums(), \"dataset source files\"\r\n File \"/home2/zhenggo1/anaconda3/envs/lpot/lib/python3.7/site-packages/datasets/utils/info_utils.py\", line 39, in verify_checksums\r\n raise NonMatchingChecksumError(error_msg + str(bad_urls))\r\ndatasets.utils.info_utils.NonMatchingChecksumError: Checksums didn't match for dataset source files:\r\n['https://rajpurkar.github.io/SQuAD-explorer/dataset/train-v1.1.json']\r\n```\r\n### 2 I try the second way,and run the examples/question-answering/run_qa.py,it lead to another bug orz..\r\n```\r\nTraceback (most recent call last):\r\n File \"examples/question-answering/run_qa.py\", line 523, in <module>\r\n main()\r\n File \"examples/question-answering/run_qa.py\", line 379, in main\r\n load_from_cache_file=not data_args.overwrite_cache,\r\n File \"/home2/zhenggo1/anaconda3/envs/lpot/lib/python3.7/site-packages/datasets/arrow_dataset.py\", line 1120, in map\r\n update_data = does_function_return_dict(test_inputs, test_indices)\r\n File \"/home2/zhenggo1/anaconda3/envs/lpot/lib/python3.7/site-packages/datasets/arrow_dataset.py\", line 1091, in does_function_return_dict\r\n function(*fn_args, indices, **fn_kwargs) if with_indices else function(*fn_args, **fn_kwargs)\r\n File \"examples/question-answering/run_qa.py\", line 339, in prepare_train_features\r\n if len(answers[\"answer_start\"]) == 0:\r\nTypeError: list indices must be integers or slices, not str\r\n```\r\n## may be the function prepare_train_features in run_qa.py need to fix,I think is that the prep\r\n```python\r\nfor i, offsets in enumerate(offset_mapping):\r\n # We will label impossible answers with the index of the CLS token.\r\n input_ids = tokenized_examples[\"input_ids\"][i]\r\n cls_index = input_ids.index(tokenizer.cls_token_id)\r\n\r\n # Grab the sequence corresponding to that example (to know what is the context and what is the question).\r\n sequence_ids = tokenized_examples.sequence_ids(i)\r\n\r\n # One example can give several spans, this is the index of the example containing this span of text.\r\n sample_index = sample_mapping[i]\r\n answers = examples[answer_column_name][sample_index]\r\n print(examples,answers)\r\n # If no answers are given, set the cls_index as answer.\r\n if len(answers[\"answer_start\"]) == 0:\r\n tokenized_examples[\"start_positions\"].append(cls_index)\r\n tokenized_examples[\"end_positions\"].append(cls_index)\r\n else:\r\n # Start/end character index of the answer in the text.\r\n start_char = answers[\"answer_start\"][0]\r\n end_char = start_char + len(answers[\"text\"][0])\r\n\r\n # Start token index of the current span in the text.\r\n token_start_index = 0\r\n while sequence_ids[token_start_index] != (1 if pad_on_right else 0):\r\n token_start_index += 1\r\n\r\n # End token index of the current span in the text.\r\n token_end_index = len(input_ids) - 1\r\n while sequence_ids[token_end_index] != (1 if pad_on_right else 0):\r\n token_end_index -= 1\r\n\r\n # Detect if the answer is out of the span (in which case this feature is labeled with the CLS index).\r\n if not (offsets[token_start_index][0] <= start_char and offsets[token_end_index][1] >= end_char):\r\n tokenized_examples[\"start_positions\"].append(cls_index)\r\n tokenized_examples[\"end_positions\"].append(cls_index)\r\n else:\r\n # Otherwise move the token_start_index and token_end_index to the two ends of the answer.\r\n # Note: we could go after the last offset if the answer is the last word (edge case).\r\n while token_start_index < len(offsets) and offsets[token_start_index][0] <= start_char:\r\n token_start_index += 1\r\n tokenized_examples[\"start_positions\"].append(token_start_index - 1)\r\n while offsets[token_end_index][1] >= end_char:\r\n token_end_index -= 1\r\n tokenized_examples[\"end_positions\"].append(token_end_index + 1)\r\n\r\n return tokenized_examples\r\n``` ",
"## I have fixed it, @lhoestq \r\n### the first section change as you said and add [\"id\"]\r\n```python\r\ndef process_squad(examples):\r\n \"\"\"\r\n Process a dataset in the squad format with columns \"title\" and \"paragraphs\"\r\n to return the dataset with columns \"context\", \"question\" and \"answers\".\r\n \"\"\"\r\n # print(examples)\r\n out = {\"context\": [], \"question\": [], \"answers\":[],\"id\":[]} \r\n for paragraphs in examples[\"paragraphs\"]: \r\n for paragraph in paragraphs: \r\n for qa in paragraph[\"qas\"]: \r\n answers = [{\"answer_start\": answer[\"answer_start\"], \"text\": answer[\"text\"].strip()} for answer in qa[\"answers\"]] \r\n out[\"context\"].append(paragraph[\"context\"].strip()) \r\n out[\"question\"].append(qa[\"question\"].strip()) \r\n out[\"answers\"].append(answers) \r\n out[\"id\"].append(qa[\"id\"]) \r\n return out\r\ncolumn_names = datasets[\"train\"].column_names if training_args.do_train else datasets[\"validation\"].column_names\r\n# print(datasets[\"train\"].column_names)\r\nif set(column_names) == {\"title\", \"paragraphs\"}:\r\n datasets = datasets.map(process_squad, batched=True, remove_columns=column_names)\r\n# Preprocessing the datasets.\r\n# Preprocessing is slighlty different for training and evaluation.\r\nif training_args.do_train:\r\n column_names = datasets[\"train\"].column_names\r\nelse:\r\n column_names = datasets[\"validation\"].column_names\r\n# print(column_names)\r\nquestion_column_name = \"question\" if \"question\" in column_names else column_names[0]\r\ncontext_column_name = \"context\" if \"context\" in column_names else column_names[1]\r\nanswer_column_name = \"answers\" if \"answers\" in column_names else column_names[2]\r\n```\r\n### the second section\r\n```python\r\ndef prepare_train_features(examples):\r\n # Tokenize our examples with truncation and maybe padding, but keep the overflows using a stride. This results\r\n # in one example possible giving several features when a context is long, each of those features having a\r\n # context that overlaps a bit the context of the previous feature.\r\n tokenized_examples = tokenizer(\r\n examples[question_column_name if pad_on_right else context_column_name],\r\n examples[context_column_name if pad_on_right else question_column_name],\r\n truncation=\"only_second\" if pad_on_right else \"only_first\",\r\n max_length=data_args.max_seq_length,\r\n stride=data_args.doc_stride,\r\n return_overflowing_tokens=True,\r\n return_offsets_mapping=True,\r\n padding=\"max_length\" if data_args.pad_to_max_length else False,\r\n )\r\n\r\n # Since one example might give us several features if it has a long context, we need a map from a feature to\r\n # its corresponding example. This key gives us just that.\r\n sample_mapping = tokenized_examples.pop(\"overflow_to_sample_mapping\")\r\n # The offset mappings will give us a map from token to character position in the original context. This will\r\n # help us compute the start_positions and end_positions.\r\n offset_mapping = tokenized_examples.pop(\"offset_mapping\")\r\n\r\n # Let's label those examples!\r\n tokenized_examples[\"start_positions\"] = []\r\n tokenized_examples[\"end_positions\"] = []\r\n\r\n for i, offsets in enumerate(offset_mapping):\r\n # We will label impossible answers with the index of the CLS token.\r\n input_ids = tokenized_examples[\"input_ids\"][i]\r\n cls_index = input_ids.index(tokenizer.cls_token_id)\r\n\r\n # Grab the sequence corresponding to that example (to know what is the context and what is the question).\r\n sequence_ids = tokenized_examples.sequence_ids(i)\r\n\r\n # One example can give several spans, this is the index of the example containing this span of text.\r\n sample_index = sample_mapping[i]\r\n answers = examples[answer_column_name][sample_index]\r\n # print(examples,answers,offset_mapping,tokenized_examples)\r\n # If no answers are given, set the cls_index as answer.\r\n if len(answers) == 0:#len(answers[\"answer_start\"]) == 0:\r\n tokenized_examples[\"start_positions\"].append(cls_index)\r\n tokenized_examples[\"end_positions\"].append(cls_index)\r\n else:\r\n # Start/end character index of the answer in the text.\r\n start_char = answers[0][\"answer_start\"]\r\n end_char = start_char + len(answers[0][\"text\"])\r\n\r\n # Start token index of the current span in the text.\r\n token_start_index = 0\r\n while sequence_ids[token_start_index] != (1 if pad_on_right else 0):\r\n token_start_index += 1\r\n\r\n # End token index of the current span in the text.\r\n token_end_index = len(input_ids) - 1\r\n while sequence_ids[token_end_index] != (1 if pad_on_right else 0):\r\n token_end_index -= 1\r\n\r\n # Detect if the answer is out of the span (in which case this feature is labeled with the CLS index).\r\n if not (offsets[token_start_index][0] <= start_char and offsets[token_end_index][1] >= end_char):\r\n tokenized_examples[\"start_positions\"].append(cls_index)\r\n tokenized_examples[\"end_positions\"].append(cls_index)\r\n else:\r\n # Otherwise move the token_start_index and token_end_index to the two ends of the answer.\r\n # Note: we could go after the last offset if the answer is the last word (edge case).\r\n while token_start_index < len(offsets) and offsets[token_start_index][0] <= start_char:\r\n token_start_index += 1\r\n tokenized_examples[\"start_positions\"].append(token_start_index - 1)\r\n while offsets[token_end_index][1] >= end_char:\r\n token_end_index -= 1\r\n tokenized_examples[\"end_positions\"].append(token_end_index + 1)\r\n return tokenized_examples\r\n```",
"I'm glad you managed to fix run_qa.py for your case :)\r\n\r\nRegarding the checksum error, I'm not able to reproduce on my side.\r\nThis errors says that the downloaded file doesn't match the expected file.\r\n\r\nCould you try running this and let me know if you get the same output as me ?\r\n```python\r\nfrom datasets.utils.info_utils import get_size_checksum_dict\r\nfrom datasets import cached_path\r\n\r\nget_size_checksum_dict(cached_path(\"https://rajpurkar.github.io/SQuAD-explorer/dataset/train-v1.1.json\"))\r\n# {'num_bytes': 30288272, 'checksum': '3527663986b8295af4f7fcdff1ba1ff3f72d07d61a20f487cb238a6ef92fd955'}\r\n```",
"I run the code,and it show below:\r\n```\r\n>>> from datasets.utils.info_utils import get_size_checksum_dict\r\n>>> from datasets import cached_path\r\n>>> get_size_checksum_dict(cached_path(\"https://rajpurkar.github.io/SQuAD-explorer/dataset/train-v1.1.json\"))\r\nDownloading: 30.3MB [04:13, 120kB/s]\r\n{'num_bytes': 30288272, 'checksum': '3527663986b8295af4f7fcdff1ba1ff3f72d07d61a20f487cb238a6ef92fd955'}\r\n```",
"Alright ! So in this case redownloading the file with `download_mode=\"force_redownload\"` should fix it. Can you try using `download_mode=\"force_redownload\"` again ?\r\n\r\nNot sure why it didn't work for you the first time though :/"
] | 2021-03-01T08:41:31 | 2022-10-05T13:09:47 | 2022-10-05T13:09:47 |
NONE
| null | null | null |
### 1 When I try to train lxmert,and follow the code in README that --dataset name:
```shell
python examples/question-answering/run_qa.py --model_name_or_path unc-nlp/lxmert-base-uncased --dataset_name squad --do_train --do_eval --per_device_train_batch_size 12 --learning_rate 3e-5 --num_train_epochs 2 --max_seq_length 384 --doc_stride 128 --output_dir /home2/zhenggo1/checkpoint/lxmert_squad
```
the bug is that:
```
Downloading and preparing dataset squad/plain_text (download: 33.51 MiB, generated: 85.75 MiB, post-processed: Unknown size, total: 119.27 MiB) to /home2/zhenggo1/.cache/huggingface/datasets/squad/plain_text/1.0.0/4c81550d83a2ac7c7ce23783bd8ff36642800e6633c1f18417fb58c3ff50cdd7...
Traceback (most recent call last):
File "examples/question-answering/run_qa.py", line 501, in <module>
main()
File "examples/question-answering/run_qa.py", line 217, in main
datasets = load_dataset(data_args.dataset_name, data_args.dataset_config_name)
File "/home2/zhenggo1/anaconda3/envs/lpot/lib/python3.7/site-packages/datasets/load.py", line 746, in load_dataset
use_auth_token=use_auth_token,
File "/home2/zhenggo1/anaconda3/envs/lpot/lib/python3.7/site-packages/datasets/builder.py", line 573, in download_and_prepare
dl_manager=dl_manager, verify_infos=verify_infos, **download_and_prepare_kwargs
File "/home2/zhenggo1/anaconda3/envs/lpot/lib/python3.7/site-packages/datasets/builder.py", line 633, in _download_and_prepare
self.info.download_checksums, dl_manager.get_recorded_sizes_checksums(), "dataset source files"
File "/home2/zhenggo1/anaconda3/envs/lpot/lib/python3.7/site-packages/datasets/utils/info_utils.py", line 39, in verify_checksums
raise NonMatchingChecksumError(error_msg + str(bad_urls))
datasets.utils.info_utils.NonMatchingChecksumError: Checksums didn't match for dataset source files:
['https://rajpurkar.github.io/SQuAD-explorer/dataset/train-v1.1.json']
```
And I try to find the [checksum link](https://github.com/huggingface/datasets/blob/master/datasets/squad/dataset_infos.json)
,is the problem plain_text do not have a checksum?
### 2 When I try to train lxmert,and use local dataset:
```
python examples/question-answering/run_qa.py --model_name_or_path unc-nlp/lxmert-base-uncased --train_file $SQUAD_DIR/train-v1.1.json --validation_file $SQUAD_DIR/dev-v1.1.json --do_train --do_eval --per_device_train_batch_size 12 --learning_rate 3e-5 --num_train_epochs 2 --max_seq_length 384 --doc_stride 128 --output_dir /home2/zhenggo1/checkpoint/lxmert_squad
```
The bug is that
```
['title', 'paragraphs']
Traceback (most recent call last):
File "examples/question-answering/run_qa.py", line 501, in <module>
main()
File "examples/question-answering/run_qa.py", line 273, in main
answer_column_name = "answers" if "answers" in column_names else column_names[2]
IndexError: list index out of range
```
I print the answer_column_name and find that local squad dataset need the package datasets to preprocessing so that the code below can work:
```
if training_args.do_train:
column_names = datasets["train"].column_names
else:
column_names = datasets["validation"].column_names
print(datasets["train"].column_names)
question_column_name = "question" if "question" in column_names else column_names[0]
context_column_name = "context" if "context" in column_names else column_names[1]
answer_column_name = "answers" if "answers" in column_names else column_names[2]
```
## Please tell me how to fix the bug,thks a lot!
|
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MDU6SXNzdWU4MTgyODk5Njc=
| 1,963 |
bug in SNLI dataset
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[
"Hi ! The labels -1 correspond to the examples without gold labels in the original snli dataset.\r\nFeel free to remove these examples if you don't need them by using\r\n```python\r\ndata = data.filter(lambda x: x[\"label\"] != -1)\r\n```"
] | 2021-02-28T19:36:20 | 2022-10-05T13:13:46 | 2022-10-05T13:13:46 |
NONE
| null | null | null |
Hi
There is label of -1 in train set of SNLI dataset, please find the code below:
```
import numpy as np
import datasets
data = datasets.load_dataset("snli")["train"]
labels = []
for d in data:
labels.append(d["label"])
print(np.unique(labels))
```
and results:
`[-1 0 1 2]`
version of datasets used:
`datasets 1.2.1 <pip>
`
thanks for your help. @lhoestq
|
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MDU6SXNzdWU4MTgwNTU2NDQ=
| 1,959 |
Bug in skip_rows argument of load_dataset function ?
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[
"Hi,\r\n\r\ntry `skiprows` instead. This part is not properly documented in the docs it seems.\r\n\r\n@lhoestq I'll fix this as part of a bigger PR that fixes typos in the docs."
] | 2021-02-27T23:32:54 | 2021-03-09T10:21:32 | 2021-03-09T10:21:32 |
NONE
| null | null | null |
Hello everyone,
I'm quite new to Git so sorry in advance if I'm breaking some ground rules of issues posting... :/
I tried to use the load_dataset function, from Huggingface datasets library, on a csv file using the skip_rows argument described on Huggingface page to skip the first row containing column names
`test_dataset = load_dataset('csv', data_files=['test_wLabel.tsv'], delimiter='\t', column_names=["id", "sentence", "label"], skip_rows=1)`
But I got the following error message
`__init__() got an unexpected keyword argument 'skip_rows'`
Have I used the wrong argument ? Am I missing something or is this a bug ?
Thank you very much for your time,
Best regards,
Arthur
|
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MDU6SXNzdWU4MTgwMzc1NDg=
| 1,958 |
XSum dataset download link broken
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[
"Never mind, I ran it again and it worked this time. Strange."
] | 2021-02-27T21:47:56 | 2021-02-27T21:50:16 | 2021-02-27T21:50:16 |
NONE
| null | null | null |
I did
```
from datasets import load_dataset
dataset = load_dataset("xsum")
```
This returns
`ConnectionError: Couldn't reach http://bollin.inf.ed.ac.uk/public/direct/XSUM-EMNLP18-Summary-Data-Original.tar.gz`
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[distributed env] potentially unsafe parallel execution
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[
"You can pass the same `experiment_id` for all the metrics of the same group, and use another `experiment_id` for the other groups.\r\nMaybe we can add an environment variable that sets the default value for `experiment_id` ? What do you think ?",
"Ah, you're absolutely correct, @lhoestq - it's exactly the equivalent of the shared secret. Thank you!"
] | 2021-02-27T20:38:45 | 2021-03-01T17:24:42 | 2021-03-01T17:24:42 |
CONTRIBUTOR
| null | null | null |
```
metric = load_metric('glue', 'mrpc', num_process=num_process, process_id=rank)
```
presumes that there is only one set of parallel processes running - and will intermittently fail if you have multiple sets running as they will surely overwrite each other. Similar to https://github.com/huggingface/datasets/issues/1942 (but for a different reason).
That's why dist environments use some unique to a group identifier so that each group is dealt with separately.
e.g. the env-way of pytorch dist syncing is done with a unique per set `MASTER_ADDRESS+MASTER_PORT`
So ideally this interface should ask for a shared secret to do the right thing.
I'm not reporting an immediate need, but am only flagging that this will hit someone down the road.
This problem can be remedied by adding a new optional `shared_secret` option, which can then be used to differentiate different groups of processes. and this secret should be part of the file lock name and the experiment.
Thank you
|
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add a new column
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[
"Hi\r\nnot sure how change the lable after creation, but this is an issue not dataset request. thanks ",
"Hi ! Currently you have to use `map` . You can see an example of how to do it in this comment: https://github.com/huggingface/datasets/issues/853#issuecomment-727872188\r\n\r\nIn the future we'll add support for a more native way of adding a new column ;)"
] | 2021-02-26T18:17:27 | 2021-04-29T14:50:43 | 2021-04-29T14:50:43 |
NONE
| null | null | null |
Hi
I'd need to add a new column to the dataset, I was wondering how this can be done? thanks
@lhoestq
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Enable Fast Filtering using Arrow Dataset
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[
"Hi @gchhablani :)\r\nThanks for proposing your help !\r\n\r\nI'll be doing a refactor of some parts related to filtering in the scope of https://github.com/huggingface/datasets/issues/1877\r\nSo I would first wait for this refactor to be done before working on the filtering. In particular because I plan to make things simpler to manipulate.\r\n\r\nYour feedback on this refactor would also be appreciated since it also aims at making the core code more accessible (basically my goal is that no one's ever \"having troubles getting started\" ^^)\r\n\r\nThis will be available in a few days, I will be able to give you more details at that time if you don't mind waiting a bit !",
"Sure! I don't mind waiting. I'll check the refactor and try to understand what you're trying to do :)"
] | 2021-02-26T02:53:37 | 2021-02-26T19:18:29 | null |
CONTRIBUTOR
| null | null | null |
Hi @lhoestq,
As mentioned in Issue #1796, I would love to work on enabling fast filtering/mapping. Can you please share the expectations? It would be great if you could point me to the relevant methods/files involved. Or the docs or maybe an overview of `arrow_dataset.py`. I only ask this because I am having trouble getting started ;-;
Any help would be appreciated.
Thanks,
Gunjan
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dataset loading logger level
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[
"These warnings are showed when there's a call to `.map` to say to the user that a dataset is reloaded from the cache instead of being recomputed.\r\nThey are warnings since we want to make sure the users know that it's not recomputed.",
"Thank you for explaining the intention, @lhoestq \r\n\r\n1. Could it be then made more human-friendly? Currently the hex gibberish tells me nothing of what's really going on. e.g. the following is instructive, IMHO:\r\n\r\n```\r\nWARNING: wmt16/ro-en/train dataset was loaded from cache instead of being recomputed\r\nWARNING: wmt16/ro-en/validation dataset was loaded from cache instead of being recomputed\r\nWARNING: wmt16/ro-en/test dataset was loaded from cache instead of being recomputed\r\n```\r\nnote that it removes the not so useful hex info and tells the user instead which split it's referring to - but probably no harm in keeping the path if it helps the debug. But the key is that now the warning is telling me what it is it's warning me about.\r\n```\r\nWarning:Loading cache path\r\n```\r\non the other hand isn't telling what it is warning about.\r\n\r\nAnd I still suggest this is INFO level, otherwise you need to turn all 'using cache' statements to WARNING to be consistent. The user is most likely well aware the cache is used for models, etc. So this feels very similar.\r\n\r\n2. Should there be a way for a user to void warranty by having a flag - `I know I'm expecting the cached version to load if it's available - please do not warn me about it=True`\r\n\r\nTo explain the need: Warnings are a problem, they constantly take attention away because they could be the harbinger of a problem. Therefore I prefer not to have any warnings in the log, and if I get any I usually try to deal with those so that my log is clean. \r\n\r\nIt's less of an issue for somebody doing long runs. It's a huge issue for someone who does a new run every few minutes and on the lookout for any potential problems which is what I have been doing a lot of integrating DeepSpeed and other things. And since there are already problems to deal with during the integration it's nice to have a clean log to start with. \r\n\r\nI hope my need is not unreasonable and I was able to explain it adequately. \r\n\r\nThank you.",
"Hey, any news about the issue? So many warnings when I'm really ok with the dataset not being recomputed :)"
] | 2021-02-25T18:33:37 | 2023-07-12T17:19:30 | 2023-07-12T17:19:30 |
CONTRIBUTOR
| null | null | null |
on master I get this with `--dataset_name wmt16 --dataset_config ro-en`:
```
WARNING:datasets.arrow_dataset:Loading cached processed dataset at /home/stas/.cache/huggingface/datasets/wmt16/ro-en/1.0.0/9dc00622c30446e99c4c63d12a484ea4fb653f2f37c867d6edcec839d7eae50f/cache-2e01bead8cf42e26.arrow
WARNING:datasets.arrow_dataset:Loading cached processed dataset at /home/stas/.cache/huggingface/datasets/wmt16/ro-en/1.0.0/9dc00622c30446e99c4c63d12a484ea4fb653f2f37c867d6edcec839d7eae50f/cache-ac3bebaf4f91f776.arrow
WARNING:datasets.arrow_dataset:Loading cached processed dataset at /home/stas/.cache/huggingface/datasets/wmt16/ro-en/1.0.0/9dc00622c30446e99c4c63d12a484ea4fb653f2f37c867d6edcec839d7eae50f/cache-810c3e61259d73a9.arrow
```
why are those WARNINGs? Should be INFO, no?
warnings should only be used when a user needs to pay attention to something, this is just informative - I'd even say it should be DEBUG, but definitely not WARNING.
Thank you.
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AttributeError: 'DatasetDict' object has no attribute 'concatenate_datasets'
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[
"sorry my mistake, datasets were overwritten closing now, thanks a lot"
] | 2021-02-25T13:09:45 | 2021-02-25T13:20:35 | 2021-02-25T13:20:26 |
NONE
| null | null | null |
Hi
I am trying to concatenate a list of huggingface datastes as:
` train_dataset = datasets.concatenate_datasets(train_datasets)
`
Here is the `train_datasets` when I print:
```
[Dataset({
features: ['attention_mask', 'idx', 'input_ids', 'label', 'question1', 'question2', 'token_type_ids'],
num_rows: 120361
}), Dataset({
features: ['attention_mask', 'idx', 'input_ids', 'label', 'question1', 'question2', 'token_type_ids'],
num_rows: 2670
}), Dataset({
features: ['attention_mask', 'idx', 'input_ids', 'label', 'question1', 'question2', 'token_type_ids'],
num_rows: 6944
}), Dataset({
features: ['attention_mask', 'idx', 'input_ids', 'label', 'question1', 'question2', 'token_type_ids'],
num_rows: 38140
}), Dataset({
features: ['attention_mask', 'idx', 'input_ids', 'label', 'question1', 'question2', 'token_type_ids'],
num_rows: 173711
}), Dataset({
features: ['attention_mask', 'idx', 'input_ids', 'label', 'question1', 'question2', 'token_type_ids'],
num_rows: 1655
}), Dataset({
features: ['attention_mask', 'idx', 'input_ids', 'label', 'question1', 'question2', 'token_type_ids'],
num_rows: 4274
}), Dataset({
features: ['attention_mask', 'idx', 'input_ids', 'label', 'question1', 'question2', 'token_type_ids'],
num_rows: 2019
}), Dataset({
features: ['attention_mask', 'idx', 'input_ids', 'label', 'question1', 'question2', 'token_type_ids'],
num_rows: 2109
}), Dataset({
features: ['attention_mask', 'idx', 'input_ids', 'label', 'question1', 'question2', 'token_type_ids'],
num_rows: 11963
})]
```
I am getting the following error:
`AttributeError: 'DatasetDict' object has no attribute 'concatenate_datasets'
`
I was wondering if you could help me with this issue, thanks a lot
|
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[experiment] missing default_experiment-1-0.arrow
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[
"Hi !\r\n\r\nThe cache at `~/.cache/huggingface/metrics` stores the users data for metrics computations (hence the arrow files).\r\n\r\nHowever python modules (i.e. dataset scripts, metric scripts) are stored in `~/.cache/huggingface/modules/datasets_modules`.\r\n\r\nIn particular the metrics are cached in `~/.cache/huggingface/modules/datasets_modules/metrics/`\r\n\r\nFeel free to take a look at your cache and let me know if you find any issue that would help explaining why you had an issue with `rouge` with no connection. I'm doing some tests on my side to try to reproduce the issue you have\r\n",
"Thank you for clarifying that the metrics files are to be found elsewhere, @lhoestq \r\n\r\n> The cache at ~/.cache/huggingface/metrics stores the users data for metrics computations (hence the arrow files).\r\n\r\ncould it be renamed to reflect that? otherwise it misleadingly suggests that it's the metrics. Perhaps `~/.cache/huggingface/metrics-user-data`?\r\n\r\nAnd there are so many `.lock` files w/o corresponding files under `~/.cache/huggingface/metrics/`. Why are they there? \r\n\r\nfor example after I wipe out the dir completely and do one training I end up with:\r\n```\r\n~/.cache/huggingface/metrics/sacrebleu/default/default_experiment-1-0.arrow.lock\r\n```\r\nwhat is that lock file locking when nothing is running?",
"The lock files come from an issue with filelock (see comment in the code [here](https://github.com/benediktschmitt/py-filelock/blob/master/filelock.py#L394-L398)). Basically on unix there're always .lock files left behind. I haven't dove into this issue",
"are you sure you need an external lock file? if it's a single purpose locking in the same scope you can lock the caller `__file__` instead, e.g. here is how one can `flock` the script file itself to ensure atomic printing:\r\n\r\n```\r\nimport fcntl\r\ndef printflock(*msgs):\r\n \"\"\" print in multiprocess env so that the outputs from different processes don't get interleaved \"\"\"\r\n with open(__file__, \"r\") as fh:\r\n fcntl.flock(fh, fcntl.LOCK_EX)\r\n try:\r\n print(*msgs)\r\n finally:\r\n fcntl.flock(fh, fcntl.LOCK_UN)\r\n```\r\n",
"OK, this issue is not about caching but some internal conflict/race condition it seems, I have just run into it on my normal env:\r\n\r\n```\r\nTraceback (most recent call last):\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/metric.py\", line 356, in _finalize\r\n self.data = Dataset(**reader.read_files([{\"filename\": f} for f in file_paths]))\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/arrow_reader.py\", line 236, in read_files\r\n pa_table = self._read_files(files, in_memory=in_memory)\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/arrow_reader.py\", line 171, in _read_files\r\n pa_table: pa.Table = self._get_dataset_from_filename(f_dict, in_memory=in_memory)\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/arrow_reader.py\", line 302, in _get_dataset_from_filename\r\n pa_table = ArrowReader.read_table(filename, in_memory=in_memory)\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/arrow_reader.py\", line 322, in read_table\r\n stream = stream_from(filename)\r\n File \"pyarrow/io.pxi\", line 782, in pyarrow.lib.memory_map\r\n File \"pyarrow/io.pxi\", line 743, in pyarrow.lib.MemoryMappedFile._open\r\n File \"pyarrow/error.pxi\", line 122, in pyarrow.lib.pyarrow_internal_check_status\r\n File \"pyarrow/error.pxi\", line 97, in pyarrow.lib.check_status\r\nFileNotFoundError: [Errno 2] Failed to open local file '/home/stas/.cache/huggingface/metrics/sacrebleu/default/default_experiment-1-0.arrow'. Detail: [errno 2] No such file or directory\r\n\r\nDuring handling of the above exception, another exception occurred:\r\n\r\nTraceback (most recent call last):\r\n File \"examples/seq2seq/run_seq2seq.py\", line 655, in <module>\r\n main()\r\n File \"examples/seq2seq/run_seq2seq.py\", line 619, in main\r\n test_results = trainer.predict(\r\n File \"/mnt/nvme1/code/huggingface/transformers-master/src/transformers/trainer_seq2seq.py\", line 121, in predict\r\n return super().predict(test_dataset, ignore_keys=ignore_keys, metric_key_prefix=metric_key_prefix)\r\n File \"/mnt/nvme1/code/huggingface/transformers-master/src/transformers/trainer.py\", line 1706, in predict\r\n output = self.prediction_loop(\r\n File \"/mnt/nvme1/code/huggingface/transformers-master/src/transformers/trainer.py\", line 1813, in prediction_loop\r\n metrics = self.compute_metrics(EvalPrediction(predictions=preds, label_ids=label_ids))\r\n File \"examples/seq2seq/run_seq2seq.py\", line 556, in compute_metrics\r\n result = metric.compute(predictions=decoded_preds, references=decoded_labels)\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/metric.py\", line 388, in compute\r\n self._finalize()\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/metric.py\", line 358, in _finalize\r\n raise ValueError(\r\nValueError: Error in finalize: another metric instance is already using the local cache file. Please specify an experiment_id to avoid colision between distributed metric instances.\r\n```\r\n\r\nI'm just running `run_seq2seq.py` under DeepSpeed:\r\n\r\n```\r\nexport BS=16; rm -r output_dir; PYTHONPATH=src USE_TF=0 CUDA_VISIBLE_DEVICES=0,1 deepspeed --num_gpus=2 examples/seq2seq/run_seq2seq.py --model_name_or_path t5-small --output_dir output_dir --adam_eps 1e-06 --do_eval --do_train --do_predict --evaluation_strategy=steps --label_smoothing 0.1 --learning_rate 3e-5 --logging_first_step --logging_steps 1000 --max_source_length 128 --max_target_length 128 --num_train_epochs 1 --overwrite_output_dir --per_device_eval_batch_size $BS --per_device_train_batch_size $BS --predict_with_generate --eval_steps 25000 --sortish_sampler --task translation_en_to_ro --val_max_target_length 128 --warmup_steps 500 --max_train_samples 100 --max_val_samples 100 --max_test_samples 100 --dataset_name wmt16 --dataset_config ro-en --source_prefix \"translate English to Romanian: \" --deepspeed examples/tests/deepspeed/ds_config.json\r\n```\r\n\r\nIt finished the evaluation OK and crashed on the prediction part of the Trainer. But the eval / predict parts no longer run under Deepspeed, it's just plain ddp.\r\n\r\nIs this some kind of race condition? It happens intermittently - there is nothing else running at the same time.\r\n\r\nBut if 2 independent instances of the same script were to run at the same time it's clear to see that this problem would happen. Perhaps it'd help to create a unique hash which is shared between all processes in the group and use that as the default experiment id?\r\n",
"When you're using metrics in a distributed setup, there are two cases:\r\n1. you're doing two completely different experiments (two evaluations) and the 2 metrics jobs have nothing to do with each other\r\n2. you're doing one experiment (one evaluation) but use multiple processes to feed the data to the metric.\r\n\r\nIn case 1. you just need to provide two different `experiment_id` so that the metrics don't collide.\r\nIn case 2. they must have the same experiment_id (or use the default one), but in this case you also need to provide the `num_processes` and `process_id`\r\n\r\nIf understand correctly you're in situation 2.\r\n\r\nIf so, you make sure that you instantiate the metrics with both the right `num_processes` and `process_id` parameters ?\r\n\r\nIf they're not set, then the cache files of the two metrics collide it can cause issues. For example if one metric finishes before the other, then the cache file is deleted and the other metric gets a FileNotFoundError\r\nThere's more information in the [documentation](https://huggingface.co/docs/datasets/loading_metrics.html#distributed-setups) if you want\r\n\r\nHope that helps !",
"Thank you for explaining that in a great way, @lhoestq \r\n\r\nSo the bottom line is that the `transformers` examples are broken since they don't do any of that. At least `run_seq2seq.py` just does `metric = load_metric(metric_name)`\r\n\r\nWhat test would you recommend to reliably reproduce this bug in `examples/seq2seq/run_seq2seq.py`?",
"To give more context, we are just using the metrics for the `comput_metric` function and nothing else. Is there something else we can use that just applies the function to the full arrays of predictions and labels? Because that's all we need, all the gathering has already been done because the datasets Metric multiprocessing relies on file storage and thus does not work in a multi-node distributed setup (whereas the Trainer does).\r\n\r\nOtherwise, we'll have to switch to something else to compute the metrics :-(",
"OK, it definitely leads to a race condition in how it's used right now. Here is how you can reproduce it - by injecting a random sleep time different for each process before the locks are acquired. \r\n```\r\n--- a/src/datasets/metric.py\r\n+++ b/src/datasets/metric.py\r\n@@ -348,6 +348,16 @@ class Metric(MetricInfoMixin):\r\n\r\n elif self.process_id == 0:\r\n # Let's acquire a lock on each node files to be sure they are finished writing\r\n+\r\n+ import time\r\n+ import random\r\n+ import os\r\n+ pid = os.getpid()\r\n+ random.seed(pid)\r\n+ secs = random.randint(1, 15)\r\n+ time.sleep(secs)\r\n+ print(f\"sleeping {secs}\")\r\n+\r\n file_paths, filelocks = self._get_all_cache_files()\r\n\r\n # Read the predictions and references\r\n@@ -385,7 +395,10 @@ class Metric(MetricInfoMixin):\r\n\r\n if predictions is not None:\r\n self.add_batch(predictions=predictions, references=references)\r\n+ print(\"FINALIZE START\")\r\n+\r\n self._finalize()\r\n+ print(\"FINALIZE END\")\r\n\r\n self.cache_file_name = None\r\n self.filelock = None\r\n```\r\n\r\nthen run with 2 procs: `python -m torch.distributed.launch --nproc_per_node=2`\r\n```\r\nexport BS=16; rm -r output_dir; PYTHONPATH=src USE_TF=0 CUDA_VISIBLE_DEVICES=0,1 python -m torch.distributed.launch --nproc_per_node=2 examples/seq2seq/run_seq2seq.py --model_name_or_path t5-small --output_dir output_dir --adam_eps 1e-06 --do_eval --do_train --do_predict --evaluation_strategy=steps --label_smoothing 0.1 --learning_rate 3e-5 --logging_first_step --logging_steps 1000 --max_source_length 128 --max_target_length 128 --num_train_epochs 1 --overwrite_output_dir --per_device_eval_batch_size $BS --per_device_train_batch_size $BS --predict_with_generate --eval_steps 25000 --sortish_sampler --task translation_en_to_ro --val_max_target_length 128 --warmup_steps 500 --max_train_samples 10 --max_val_samples 10 --max_test_samples 10 --dataset_name wmt16 --dataset_config ro-en --source_prefix \"translate English to Romanian: \"\r\n```\r\n\r\n```\r\n***** Running Evaluation *****\r\n Num examples = 10\r\n Batch size = 16\r\n 0%| | 0/1 [00:00<?, ?it/s]FINALIZE START\r\nFINALIZE START\r\nsleeping 11\r\nFINALIZE END\r\n100%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 1/1 [00:11<00:00, 11.06s/it]\r\nsleeping 11\r\nTraceback (most recent call last):\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/metric.py\", line 368, in _finalize\r\n self.data = Dataset(**reader.read_files([{\"filename\": f} for f in file_paths]))\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/arrow_reader.py\", line 236, in read_files\r\n pa_table = self._read_files(files, in_memory=in_memory)\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/arrow_reader.py\", line 171, in _read_files\r\n pa_table: pa.Table = self._get_dataset_from_filename(f_dict, in_memory=in_memory)\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/arrow_reader.py\", line 302, in _get_dataset_from_filename\r\n pa_table = ArrowReader.read_table(filename, in_memory=in_memory)\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/arrow_reader.py\", line 322, in read_table\r\n stream = stream_from(filename)\r\n File \"pyarrow/io.pxi\", line 782, in pyarrow.lib.memory_map\r\n File \"pyarrow/io.pxi\", line 743, in pyarrow.lib.MemoryMappedFile._open\r\n File \"pyarrow/error.pxi\", line 122, in pyarrow.lib.pyarrow_internal_check_status\r\n File \"pyarrow/error.pxi\", line 97, in pyarrow.lib.check_status\r\nFileNotFoundError: [Errno 2] Failed to open local file '/home/stas/.cache/huggingface/metrics/sacrebleu/default/default_experiment-1-0.arrow'. Detail: [errno 2] No such file or directory\r\n\r\nDuring handling of the above exception, another exception occurred:\r\n\r\nTraceback (most recent call last):\r\n File \"examples/seq2seq/run_seq2seq.py\", line 645, in <module>\r\n main()\r\n File \"examples/seq2seq/run_seq2seq.py\", line 601, in main\r\n metrics = trainer.evaluate(\r\n File \"/mnt/nvme1/code/huggingface/transformers-mp-pp/src/transformers/trainer_seq2seq.py\", line 74, in evaluate\r\n return super().evaluate(eval_dataset, ignore_keys=ignore_keys, metric_key_prefix=metric_key_prefix)\r\n File \"/mnt/nvme1/code/huggingface/transformers-mp-pp/src/transformers/trainer.py\", line 1703, in evaluate\r\n output = self.prediction_loop(\r\n File \"/mnt/nvme1/code/huggingface/transformers-mp-pp/src/transformers/trainer.py\", line 1876, in prediction_loop\r\n metrics = self.compute_metrics(EvalPrediction(predictions=preds, label_ids=label_ids))\r\n File \"examples/seq2seq/run_seq2seq.py\", line 556, in compute_metrics\r\n result = metric.compute(predictions=decoded_preds, references=decoded_labels)\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/metric.py\", line 402, in compute\r\n self._finalize()\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/metric.py\", line 370, in _finalize\r\n raise ValueError(\r\nValueError: Error in finalize: another metric instance is already using the local cache file. Please specify an experiment_id to avoid colision between distributed metric instances.\r\n```",
"I tried to adjust `run_seq2seq.py` and trainer to use the suggested dist env:\r\n```\r\n import torch.distributed as dist\r\n metric = load_metric(metric_name, num_process=dist.get_world_size(), process_id=dist.get_rank())\r\n```\r\nand in `trainer.py` added to call just for rank 0:\r\n```\r\n if self.is_world_process_zero() and self.compute_metrics is not None and preds is not None and label_ids is not None:\r\n metrics = self.compute_metrics(EvalPrediction(predictions=preds, label_ids=label_ids))\r\n```\r\nand then the process hangs in a deadlock. \r\n\r\nHere is the tb:\r\n```\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/utils/filelock.py\", line 275 in acquire\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/metric.py\", line 306 in _check_all_processes_locks\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/metric.py\", line 501 in _init_writer\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/metric.py\", line 440 in add_batch\r\n File \"/mnt/nvme1/code/huggingface/datasets-master/src/datasets/metric.py\", line 397 in compute\r\n File \"examples/seq2seq/run_seq2seq.py\", line 558 in compute_metrics\r\n File \"/mnt/nvme1/code/huggingface/transformers-mp-pp/src/transformers/trainer.py\", line 1876 in prediction_loop\r\n File \"/mnt/nvme1/code/huggingface/transformers-mp-pp/src/transformers/trainer.py\", line 1703 in evaluate\r\n File \"/mnt/nvme1/code/huggingface/transformers-mp-pp/src/transformers/trainer_seq2seq.py\", line 74 in evaluate\r\n File \"examples/seq2seq/run_seq2seq.py\", line 603 in main\r\n File \"examples/seq2seq/run_seq2seq.py\", line 651 in <module>\r\n```\r\n\r\nBut this sounds right, since in the above diff I set up a distributed metric and only called one process - so it's blocking on waiting for other processes to do the same.\r\n\r\nSo one working solution is to leave:\r\n\r\n```\r\n metric = load_metric(metric_name)\r\n```\r\nalone, and only call `compute_metrics` from rank 0\r\n```\r\n if self.is_world_process_zero() and self.compute_metrics is not None and preds is not None and label_ids is not None:\r\n metrics = self.compute_metrics(EvalPrediction(predictions=preds, label_ids=label_ids))\r\n```\r\n\r\nso we now no longer use the distributed env as far as `datasets` is concerned, it's just a single process.\r\n\r\nAre there any repercussions/side-effects to this proposed change in Trainer? If it always gathers all inputs on rank 0 then this is how it should have been done in first place - i.e. only run for rank 0. It appears that currently it was re-calculating the metrics on all processes on the same data just to throw the results away other than for rank 0. Unless I missed something.\r\n",
"But no, since \r\n`\r\n metric = load_metric(metric_name)\r\n`\r\nis called for each process, the race condition is still there. So still getting:\r\n\r\n```\r\nValueError: Error in finalize: another metric instance is already using the local cache file. Please specify an experiment_id to avoid colision between distributed metric instances.\r\n```\r\n\r\ni.e. the only way to fix this is to `load_metric` only for rank 0, but this requires huge changes in the code and all end users' code.\r\n",
"OK, here is a workaround that works. The onus here is absolutely on the user:\r\n\r\n```\r\ndiff --git a/examples/seq2seq/run_seq2seq.py b/examples/seq2seq/run_seq2seq.py\r\nindex 2a060dac5..c82fd83ea 100755\r\n--- a/examples/seq2seq/run_seq2seq.py\r\n+++ b/examples/seq2seq/run_seq2seq.py\r\n@@ -520,7 +520,11 @@ def main():\r\n\r\n # Metric\r\n metric_name = \"rouge\" if data_args.task.startswith(\"summarization\") else \"sacrebleu\"\r\n- metric = load_metric(metric_name)\r\n+ import torch.distributed as dist\r\n+ if dist.is_initialized():\r\n+ metric = load_metric(metric_name, num_process=dist.get_world_size(), process_id=dist.get_rank())\r\n+ else:\r\n+ metric = load_metric(metric_name)\r\n\r\n def postprocess_text(preds, labels):\r\n preds = [pred.strip() for pred in preds]\r\n@@ -548,12 +552,17 @@ def main():\r\n # Some simple post-processing\r\n decoded_preds, decoded_labels = postprocess_text(decoded_preds, decoded_labels)\r\n\r\n+ kwargs = dict(predictions=decoded_preds, references=decoded_labels)\r\n+ if metric_name == \"rouge\":\r\n+ kwargs.update(use_stemmer=True)\r\n+ result = metric.compute(**kwargs) # must call for all processes\r\n+ if result is None: # only process with rank-0 will return metrics, others None\r\n+ return {}\r\n+\r\n if metric_name == \"rouge\":\r\n- result = metric.compute(predictions=decoded_preds, references=decoded_labels, use_stemmer=True)\r\n # Extract a few results from ROUGE\r\n result = {key: value.mid.fmeasure * 100 for key, value in result.items()}\r\n else:\r\n- result = metric.compute(predictions=decoded_preds, references=decoded_labels)\r\n result = {\"bleu\": result[\"score\"]}\r\n\r\n prediction_lens = [np.count_nonzero(pred != tokenizer.pad_token_id) for pred in preds]\r\n```\r\n\r\nThis is not user-friendly to say the least. And it's still wasteful as we don't need other processes to do anything.\r\n\r\nBut it solves the current race condition.\r\n\r\nClearly this calls for a design discussion as it's the responsibility of the Trainer to handle this and not user's. Perhaps in the `transformers` land?",
"I don't see how this could be the responsibility of `Trainer`, who hasn't the faintest idea of what a `datasets.Metric` is. The trainer takes a function `compute_metrics` that goes from predictions + labels to metric results, there is nothing there. That computation is done on all processes \r\n\r\nThe fact a `datasets.Metric` object cannot be used as a simple compute function in a multi-process environment is, in my opinion, a bug in `datasets`. Especially since, as I mentioned before, the multiprocessing part of `datasets.Metric` has a deep flaw since it can't work in a multinode environment. So you actually need to do the job of gather predictions and labels yourself.\r\n\r\nThe changes you are proposing Stas are making the code less readable and also concatenate all the predictions and labels `number_of_processes` times I believe, which is not going to make the metric computation any faster.\r\n\r\n",
"Right, to clarify, I meant it'd be good to have it sorted on the library side and not requiring the user to figure it out. This is too complex and error-prone and if not coded correctly the bug will be intermittent which is even worse.\r\n\r\nOh I guess I wasn't clear in my message - in no way I'm proposing that we use this workaround code - I was just showing what I had to do to make it work.\r\n\r\nWe are on the same page.\r\n\r\n> The changes you are proposing Stas are making the code less readable and also concatenate all the predictions and labels number_of_processes times I believe, which is not going to make the metric computation any faster.\r\n\r\nAnd yes, this is another problem that my workaround introduces. Thank you for pointing it out, @sgugger \r\n",
"> The fact a datasets.Metric object cannot be used as a simple compute function in a multi-process environment is, in my opinion, a bug in datasets\r\n\r\nYes totally, this use case is supposed to be supported by `datasets`. And in this case there shouldn't be any collision between the metrics. I'm looking into it :)\r\nMy guess is that at one point the metric isn't using the right file name. It's supposed to use one with a unique uuid in order to avoid the collisions.",
"I just opened #1966 to fix this :)\r\n@stas00 if have a chance feel free to try it !",
"Thank you, @lhoestq - I will experiment and report back. \r\n\r\nedit: It works! Thank you",
"Fixed in https://github.com/huggingface/datasets/pull/1966"
] | 2021-02-25T03:02:15 | 2022-10-05T13:08:45 | 2022-10-05T13:08:45 |
CONTRIBUTOR
| null | null | null |
the original report was pretty bad and incomplete - my apologies!
Please see the complete version here: https://github.com/huggingface/datasets/issues/1942#issuecomment-786336481
------------
As mentioned here https://github.com/huggingface/datasets/issues/1939 metrics don't get cached, looking at my local `~/.cache/huggingface/metrics` - there are many `*.arrow.lock` files but zero metrics files.
w/o the network I get:
```
FileNotFoundError: [Errno 2] No such file or directory: '~/.cache/huggingface/metrics/sacrebleu/default/default_experiment-1-0.arrow
```
there is just `~/.cache/huggingface/metrics/sacrebleu/default/default_experiment-1-0.arrow.lock`
I did run the same `run_seq2seq.py` script on the instance with network and it worked just fine, but only the lock file was left behind.
this is with master.
Thank you.
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[
"Thanks for reporting ! I'm taking a look",
"Index training was missing, I fixed it here: https://github.com/huggingface/datasets/commit/f5986c46323583989f6ed1dabaf267854424a521\r\n\r\nCan you try again please ?",
"Works great 👍 I just put a minor comment on the commit, I think you meant to pass the `train_size` from the one obtained from the config.\r\n\r\nThanks for a quick response!"
] | 2021-02-25T01:30:54 | 2021-02-25T14:28:46 | 2021-02-25T14:28:46 |
CONTRIBUTOR
| null | null | null |
Hi,
It looks like loading of FAISS index now fails when using index_name = 'exact'.
For example, from the RAG [model card](https://huggingface.co/facebook/rag-token-nq?fbclid=IwAR3bTfhls5U_t9DqsX2Vzb7NhtRHxJxfQ-uwFT7VuCPMZUM2AdAlKF_qkI8#usage).
Running `transformers==4.3.2` and datasets installed from source on latest `master` branch.
```bash
(venv) sergey_mkrtchyan datasets (master) $ python
Python 3.8.6 (v3.8.6:db455296be, Sep 23 2020, 13:31:39)
[Clang 6.0 (clang-600.0.57)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> from transformers import RagTokenizer, RagRetriever, RagTokenForGeneration
>>> tokenizer = RagTokenizer.from_pretrained("facebook/rag-token-nq")
>>> retriever = RagRetriever.from_pretrained("facebook/rag-token-nq", index_name="exact", use_dummy_dataset=True)
Using custom data configuration dummy.psgs_w100.nq.no_index-dummy=True,with_index=False
Reusing dataset wiki_dpr (/Users/sergey_mkrtchyan/.cache/huggingface/datasets/wiki_dpr/dummy.psgs_w100.nq.no_index-dummy=True,with_index=False/0.0.0/8a97e0f4fa5bc46e179474db6a61b09d5d2419d2911835bd3f91d110c936d8bb)
Using custom data configuration dummy.psgs_w100.nq.exact-50b6cda57ff32ab4
Reusing dataset wiki_dpr (/Users/sergey_mkrtchyan/.cache/huggingface/datasets/wiki_dpr/dummy.psgs_w100.nq.exact-50b6cda57ff32ab4/0.0.0/8a97e0f4fa5bc46e179474db6a61b09d5d2419d2911835bd3f91d110c936d8bb)
0%| | 0/10 [00:00<?, ?it/s]
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/Users/sergey_mkrtchyan/workspace/cformers/venv/lib/python3.8/site-packages/transformers/models/rag/retrieval_rag.py", line 425, in from_pretrained
return cls(
File "/Users/sergey_mkrtchyan/workspace/cformers/venv/lib/python3.8/site-packages/transformers/models/rag/retrieval_rag.py", line 387, in __init__
self.init_retrieval()
File "/Users/sergey_mkrtchyan/workspace/cformers/venv/lib/python3.8/site-packages/transformers/models/rag/retrieval_rag.py", line 458, in init_retrieval
self.index.init_index()
File "/Users/sergey_mkrtchyan/workspace/cformers/venv/lib/python3.8/site-packages/transformers/models/rag/retrieval_rag.py", line 284, in init_index
self.dataset = load_dataset(
File "/Users/sergey_mkrtchyan/workspace/huggingface/datasets/src/datasets/load.py", line 750, in load_dataset
ds = builder_instance.as_dataset(split=split, ignore_verifications=ignore_verifications, in_memory=keep_in_memory)
File "/Users/sergey_mkrtchyan/workspace/huggingface/datasets/src/datasets/builder.py", line 734, in as_dataset
datasets = utils.map_nested(
File "/Users/sergey_mkrtchyan/workspace/huggingface/datasets/src/datasets/utils/py_utils.py", line 195, in map_nested
return function(data_struct)
File "/Users/sergey_mkrtchyan/workspace/huggingface/datasets/src/datasets/builder.py", line 769, in _build_single_dataset
post_processed = self._post_process(ds, resources_paths)
File "/Users/sergey_mkrtchyan/.cache/huggingface/modules/datasets_modules/datasets/wiki_dpr/8a97e0f4fa5bc46e179474db6a61b09d5d2419d2911835bd3f91d110c936d8bb/wiki_dpr.py", line 205, in _post_process
dataset.add_faiss_index("embeddings", custom_index=index)
File "/Users/sergey_mkrtchyan/workspace/huggingface/datasets/src/datasets/arrow_dataset.py", line 2516, in add_faiss_index
super().add_faiss_index(
File "/Users/sergey_mkrtchyan/workspace/huggingface/datasets/src/datasets/search.py", line 416, in add_faiss_index
faiss_index.add_vectors(self, column=column, train_size=train_size, faiss_verbose=faiss_verbose)
File "/Users/sergey_mkrtchyan/workspace/huggingface/datasets/src/datasets/search.py", line 281, in add_vectors
self.faiss_index.add(vecs)
File "/Users/sergey_mkrtchyan/workspace/cformers/venv/lib/python3.8/site-packages/faiss/__init__.py", line 104, in replacement_add
self.add_c(n, swig_ptr(x))
File "/Users/sergey_mkrtchyan/workspace/cformers/venv/lib/python3.8/site-packages/faiss/swigfaiss.py", line 3263, in add
return _swigfaiss.IndexHNSW_add(self, n, x)
RuntimeError: Error in virtual void faiss::IndexHNSW::add(faiss::Index::idx_t, const float *) at /Users/runner/work/faiss-wheels/faiss-wheels/faiss/faiss/IndexHNSW.cpp:356: Error: 'is_trained' failed
>>>
```
The issue seems to be related to the scalar quantization in faiss added in this commit: 8c5220307c33f00e01c3bf7b8. Reverting it fixes the issue.
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Side effect when filtering data due to `does_function_return_dict` call in `Dataset.map()`
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[
"Thanks for the report !\r\n\r\nCurrently we don't have a way to let the user easily disable this behavior.\r\nHowever I agree that we should support stateful processing functions, ideally by removing `does_function_return_dict`.\r\n\r\nWe needed this function in order to know whether the `map` functions needs to write data or not. if `does_function_return_dict` returns False then we don't write anything.\r\n\r\nInstead of checking the output of the processing function outside of the for loop that iterates through the dataset to process it, we can check the output of the first processed example and at that point decide if we need to write data or not.\r\n\r\nTherefore it's definitely possible to fix this unwanted behavior, any contribution going into this direction is welcome :)",
"Thanks @mariosasko for the PR!"
] | 2021-02-24T19:18:56 | 2021-03-23T15:26:49 | 2021-03-23T15:26:49 |
CONTRIBUTOR
| null | null | null |
Hi there!
In my codebase I have a function to filter rows in a dataset, selecting only a certain number of examples per class. The function passes a extra argument to maintain a counter of the number of dataset rows/examples already selected per each class, which are the ones I want to keep in the end:
```python
def fill_train_examples_per_class(example, per_class_limit: int, counter: collections.Counter):
label = int(example['label'])
current_counter = counter.get(label, 0)
if current_counter < per_class_limit:
counter[label] = current_counter + 1
return True
return False
```
At some point I invoke it through the `Dataset.filter()` method in the `arrow_dataset.py` module like this:
```python
...
kwargs = {"per_class_limit": train_examples_per_class_limit, "counter": Counter()}
datasets['train'] = datasets['train'].filter(fill_train_examples_per_class, num_proc=1, fn_kwargs=kwargs)
...
```
The problem is that, passing a stateful container (the counter,) provokes a side effect in the new filtered dataset obtained. This is due to the fact that at some point in `filter()`, the `map()`'s function `does_function_return_dict` is invoked in line [1290](https://github.com/huggingface/datasets/blob/96578adface7e4bc1f3e8bafbac920d72ca1ca60/src/datasets/arrow_dataset.py#L1290).
When this occurs, the state of the counter is initially modified by the effects of the function call on the 1 or 2 rows selected in lines 1288 and 1289 of the same file (which are marked as `test_inputs` & `test_indices` respectively in lines 1288 and 1289. This happens out of the control of the user (which for example can't reset the state of the counter before continuing the execution,) provoking in the end an undesired side effect in the results obtained.
In my case, the resulting dataset -despite of the counter results are ok- lacks an instance of the classes 0 and 1 (which happen to be the classes of the first two examples of my dataset.) The rest of the classes I have in my dataset, contain the right number of examples as they were not affected by the effects of `does_function_return_dict` call.
I've debugged my code extensively and made a workaround myself hardcoding the necessary stuff (basically putting `update_data=True` in line 1290,) and then I obtain the results I expected without the side effect.
Is there a way to avoid that call to `does_function_return_dict` in map()'s line 1290 ? (e.g. extracting the required information that `does_function_return_dict` returns without making the testing calls to the user function on dataset rows 0 & 1)
Thanks in advance,
Francisco Perez-Sorrosal
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[firewalled env] OFFLINE mode
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[
"Thanks for reporting and for all the details and suggestions.\r\n\r\nI'm totally in favor of having a HF_DATASETS_OFFLINE env variable to disable manually all the connection checks, remove retries etc.\r\n\r\nMoreover you may know that the use case that you are mentioning is already supported from `datasets` 1.3.0, i.e. you already can:\r\n- first load datasets and metrics from an instance with internet connection\r\n- then be able to reload datasets and metrics from another instance without connection (as long as the filesystem is shared)\r\n\r\nThis is already implemented, but currently it only works if the requests return a `ConnectionError` (or any error actually). Not sure why it would hang instead of returning an error.\r\n\r\nMaybe this is just a issue with the timeout value being not set or too high ?\r\nIs there a way I can have access to one of the instances on which there's this issue (we can discuss this offline) ?\r\n",
"I'm on master, so using all the available bells and whistles already.\r\n\r\nIf you look at the common issues - it for example tries to look up files if they appear in `_PACKAGED_DATASETS_MODULES` which it shouldn't do.\r\n\r\n--------------\r\n\r\nYes, there is a nuance to it. As I mentioned it's firewalled - that is it has a network but making any calls outside - it just hangs in:\r\n\r\n```\r\nsin_addr=inet_addr(\"xx.xx.xx.xx\")}, [28->16]) = 0\r\nclose(5) = 0\r\nsocket(AF_INET, SOCK_STREAM|SOCK_CLOEXEC, IPPROTO_TCP) = 5\r\nconnect(5, {sa_family=AF_INET, sin_port=htons(3128), sin_addr=inet_addr(\"yy.yy.yy.yy\")}, 16^C) = ? ERESTARTSYS (To be restarted if SA_RESTART is set)\r\n```\r\nuntil it times out.\r\n\r\nThat's why we need to be able to tell the software that there is no network to rely on even if there is one (good for testing too).\r\n\r\nSo what I'm thinking is that this is a simple matter of pre-ambling any network call wrappers with:\r\n\r\n```\r\nif HF_DATASETS_OFFLINE:\r\n assert \"Attempting to make a network call under Offline mode\"\r\n```\r\n\r\nand then fixing up if there is anything else to fix to make it work.\r\n\r\n--------------\r\n\r\nOtherwise I think the only other problem I encountered is that we need to find a way to pre-cache metrics, for some reason it's not caching it and wanting to fetch it from online.\r\n\r\nWhich is extra strange since it already has those files in the `datasets` repo itself that is on the filesystem.\r\n\r\nThe workaround I had to do is to copy `rouge/rouge.py` (with the parent folder) from the datasets repo to the current dir - and then it proceeded.",
"Ok understand better the hanging issue.\r\nI guess catching connection errors is not enough, we should also avoid all the hangings.\r\nCurrently the offline mode tests are only done by simulating an instant connection fail that returns an error, let's have another connection mock that hangs instead.\r\n\r\nI'll also take a look at why you had to do this for `rouge`.\r\n",
"FWIW, I think instant failure on the behalf of a network call is the simplest solution to correctly represent the environment and having the caller to sort it out is the next thing to do, since here it is the case of having no functional network, it's just that the software doesn't know this is the case, because there is some network. So we just need to help it to bail out instantly rather than hang waiting for it to time out. And afterwards everything else you said.",
"Update on this: \r\n\r\nI managed to create a mock environment for tests that makes the connections hang until timeout.\r\nI managed to reproduce the issue you're having in this environment.\r\n\r\nI'll update the offline test cases to also test the robustness to connection hangings, and make sure we set proper timeouts where it's needed in the code. This should cover the _automatic_ section you mentioned.",
"Fabulous! I'm glad you were able to reproduce the issues, @lhoestq!",
"I lost access to the firewalled setup, but I emulated it with:\r\n\r\n```\r\nsudo ufw enable\r\nsudo ufw default deny outgoing\r\n```\r\n(thanks @mfuntowicz)\r\n\r\nI was able to test `HF_DATASETS_OFFLINE=1` and it worked great - i.e. didn't try to reach out with it and used the cached files instead.\r\n\r\nThank you!"
] | 2021-02-24T17:13:42 | 2021-03-05T05:09:54 | 2021-03-05T05:09:54 |
CONTRIBUTOR
| null | null | null |
This issue comes from a need to be able to run `datasets` in a firewalled env, which currently makes the software hang until it times out, as it's unable to complete the network calls.
I propose the following approach to solving this problem, using the example of `run_seq2seq.py` as a sample program. There are 2 possible ways to going about it.
## 1. Manual
manually prepare data and metrics files, that is transfer to the firewalled instance the dataset and the metrics and run:
```
DATASETS_OFFLINE=1 run_seq2seq.py --train_file xyz.csv --validation_file xyz.csv ...
```
`datasets` must not make any network calls and if there is a logic to do that and something is missing it should assert that this or that action requires network and therefore it can't proceed.
## 2. Automatic
In some clouds one can prepare a datastorage ahead of time with a normal networked environment but which doesn't have gpus and then one switches to the gpu instance which is firewalled, but it can access all the cached data. This is the ideal situation, since in this scenario we don't have to do anything manually, but simply run the same application twice:
1. on the non-firewalled instance:
```
run_seq2seq.py --dataset_name wmt16 --dataset_config ro-en ...
```
which should download and cached everything.
2. and then immediately after on the firewalled instance, which shares the same filesystem
```
DATASETS_OFFLINE=1 run_seq2seq.py --dataset_name wmt16 --dataset_config ro-en ...
```
and the metrics and datasets should be cached by the invocation number 1 and any network calls be skipped and if the logic is missing data it should assert and not try to fetch any data from online.
## Common Issues
1. for example currently `datasets` tries to look up online datasets if the files contain json or csv, despite the paths already provided
```
if dataset and path in _PACKAGED_DATASETS_MODULES:
```
2. it has an issue with metrics. e.g. I had to manually copy `rouge/rouge.py` from the `datasets` repo to the current dir - or it was hanging.
I had to comment out `head_hf_s3(...)` calls to make things work. So all those `try: head_hf_s3(...)` shouldn't be tried with `DATASETS_OFFLINE=1`
Here is the corresponding issue for `transformers`: https://github.com/huggingface/transformers/issues/10379
Thanks.
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CommonGen dataset page shows an error OSError: [Errno 28] No space left on device
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[
"Facing the same issue for [Squad](https://huggingface.co/datasets/viewer/?dataset=squad) and [TriviaQA](https://huggingface.co/datasets/viewer/?dataset=trivia_qa) datasets as well.",
"We just fixed the issue, thanks for reporting !"
] | 2021-02-24T06:47:33 | 2021-02-26T11:10:06 | 2021-02-26T11:10:06 |
CONTRIBUTOR
| null | null | null |
The page of the CommonGen data https://huggingface.co/datasets/viewer/?dataset=common_gen shows
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Add Stanford Sentiment Treebank (SST)
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[
"Dataset added in release [1.5.0](https://github.com/huggingface/datasets/releases/tag/1.5.0), I think I can close this."
] | 2021-02-23T12:53:16 | 2021-03-18T17:51:44 | 2021-03-18T17:51:44 |
CONTRIBUTOR
| null | null | null |
I am going to add SST:
- **Name:** The Stanford Sentiment Treebank
- **Description:** The first corpus with fully labeled parse trees that allows for a complete analysis of the compositional effects of sentiment in language
- **Paper:** [Recursive Deep Models for Semantic Compositionality Over a Sentiment Treebank](https://nlp.stanford.edu/~socherr/EMNLP2013_RNTN.pdf)
- **Data:** https://nlp.stanford.edu/sentiment/index.html
- **Motivation:** Already requested in #353, SST is a popular dataset for Sentiment Classification
What's the difference with the [_SST-2_](https://huggingface.co/datasets/viewer/?dataset=glue&config=sst2) dataset included in GLUE? Essentially, SST-2 is a version of SST where:
- the labels were mapped from real numbers in [0.0, 1.0] to a binary label: {0, 1}
- the labels of the *sub-sentences* were included only in the training set
- the labels in the test set are obfuscated
So there is a lot more information in the original SST. The tricky bit is, the data is scattered into many text files and, for one in particular, I couldn't find the original encoding ([*but I'm not the only one*](https://groups.google.com/g/word2vec-toolkit/c/QIUjLw6RqFk/m/_iEeyt428wkJ) 🎵). The only solution I found was to manually replace all the è, ë, ç and so on into an `utf-8` copy of the text file. I uploaded the result in my Dropbox and I am using that as the main repo for the dataset.
Also, the _sub-sentences_ are built at run-time from the information encoded in several text files, so generating the examples is a bit more cumbersome than usual. Luckily, the dataset is not enormous.
I plan to divide the dataset in 2 configs: one with just whole sentences with their labels, the other with sentences _and their sub-sentences_ with their labels. Each config will be split in train, validation and test. Hopefully this makes sense, we may discuss it in the PR I'm going to submit.
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Anonymous Dataset Addition (i.e Anonymous PR?)
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[
"Hi !\r\nI guess you can add a dataset without the fields that must be kept anonymous, and then update those when the anonymity period is over.\r\nYou can also make the PR from an anonymous org.\r\nPinging @yjernite just to make sure it's ok",
"Hello,\r\nI would prefer to do the reverse: adding a link to an anonymous paper without the people names/institution in the PR. Would it be conceivable ?\r\nCheers\r\n",
"Sure, I think it's ok on our side",
"Yup, sounds good!"
] | 2021-02-22T15:22:30 | 2022-10-05T13:07:11 | 2022-10-05T13:07:11 |
CONTRIBUTOR
| null | null | null |
Hello,
Thanks a lot for your librairy.
We plan to submit a paper on OpenReview using the Anonymous setting. Is it possible to add a new dataset without breaking the anonimity, with a link to the paper ?
Cheers
@eusip
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