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<div class="title">readInput.cpp</div>  </div>
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<a href="read_input_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#include &lt;iostream&gt;</span></div><div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#include &lt;fstream&gt;</span></div><div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div><div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;math.h&gt;</span></div><div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="preprocessor">#include &lt;cstdlib&gt;</span></div><div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span> </div><div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="input_8h.html">input.h</a>&quot;</span></div><div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="read_input_functions_8h.html">readInputFunctions.h</a>&quot;</span></div><div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="generating_points_8h.html">generatingPoints.h</a>&quot;</span></div><div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;</div><div class="line"><a name="l00012"></a><span class="lineno"><a class="line" href="read_input_8cpp.html#ad47617e2251da4eb87c56365e217c8e3">   12</a></span>&#160;<span class="keywordtype">short</span> <a class="code" href="read_input_8cpp.html#ad47617e2251da4eb87c56365e217c8e3">stopCondition</a>;</div><div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;</div><div class="line"><a name="l00015"></a><span class="lineno"><a class="line" href="read_input_8cpp.html#af336784d384b9e2ab2d990f7855ecdcf">   15</a></span>&#160;<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> <a class="code" href="read_input_8cpp.html#af336784d384b9e2ab2d990f7855ecdcf">nPoly</a>;</div><div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;</div><div class="line"><a name="l00018"></a><span class="lineno"><a class="line" href="read_input_8cpp.html#a5cd62663cb067d79183d8de4dd0224db">   18</a></span>&#160;<span class="keywordtype">double</span> <a class="code" href="read_input_8cpp.html#a5cd62663cb067d79183d8de4dd0224db">domainSize</a>[3];</div><div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;</div><div class="line"><a name="l00021"></a><span class="lineno"><a class="line" href="read_input_8cpp.html#a8ee9be1b5aa75abae556de3088cba6d9">   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459</a></span>&#160;<span class="keywordtype">int</span> *<a class="code" href="read_input_8cpp.html#a2bd7a59b7575323479f4cdd95e84505e">eLayer</a>;</div><div class="line"><a name="l00460"></a><span class="lineno">  460</span>&#160;</div><div class="line"><a name="l00468"></a><span class="lineno"><a class="line" href="read_input_8cpp.html#a9d32f63bd011a629cf644c120e07eda8">  468</a></span>&#160;<span class="keywordtype">bool</span> *<a class="code" href="read_input_8cpp.html#a9d32f63bd011a629cf644c120e07eda8">p32Status</a>;</div><div class="line"><a name="l00469"></a><span class="lineno">  469</span>&#160;</div><div class="line"><a name="l00473"></a><span class="lineno"><a class="line" href="read_input_8cpp.html#ada6852d4da13aa222e5b959bf71e89d4">  473</a></span>&#160;<span class="keywordtype">bool</span> <a class="code" href="read_input_8cpp.html#ada6852d4da13aa222e5b959bf71e89d4">ignoreBoundaryFaces</a>;</div><div class="line"><a name="l00474"></a><span class="lineno">  474</span>&#160;</div><div class="line"><a name="l00476"></a><span class="lineno"><a class="line" href="read_input_8cpp.html#a83faff54fdd582d6cfb84622ca160bf5">  476</a></span>&#160;<span class="keywordtype">int</span> <a class="code" href="read_input_8cpp.html#a83faff54fdd582d6cfb84622ca160bf5">numOfLayers</a>;</div><div class="line"><a name="l00477"></a><span class="lineno">  477</span>&#160;</div><div class="line"><a name="l00478"></a><span class="lineno">  478</span>&#160;<span class="comment">/******************************************************************/</span></div><div class="line"><a name="l00485"></a><span class="lineno"><a class="line" href="read_input_functions_8h.html#adaf8d7d2e19e6a4111e307d1764115ba">  485</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="read_input_8cpp.html#a9af5f928fea3353fc4009118630b3f52">getInput</a>(<span class="keywordtype">char</span>* input, std::vector&lt;Shape&gt; &amp;shapeFamily){</div><div class="line"><a name="l00486"></a><span class="lineno">  486</span>&#160;</div><div class="line"><a name="l00487"></a><span class="lineno">  487</span>&#160;    std::string tempstring;</div><div class="line"><a name="l00488"></a><span class="lineno">  488</span>&#160;    <span class="keywordtype">char</span> ch;</div><div class="line"><a name="l00489"></a><span class="lineno">  489</span>&#160;   </div><div class="line"><a name="l00490"></a><span class="lineno">  490</span>&#160;    std::ifstream inputFile;</div><div class="line"><a name="l00491"></a><span class="lineno">  491</span>&#160;    std::cout&lt;&lt;<span class="stringliteral">&quot;DFN Generator Input File: &quot;</span>&lt;&lt; input &lt;&lt;<span class="stringliteral">&quot;\n\n&quot;</span>; </div><div class="line"><a name="l00492"></a><span class="lineno">  492</span>&#160;</div><div class="line"><a name="l00493"></a><span class="lineno">  493</span>&#160;    <span class="comment">// Open input file and initialize variables</span></div><div class="line"><a name="l00494"></a><span class="lineno">  494</span>&#160;</div><div class="line"><a name="l00495"></a><span class="lineno">  495</span>&#160;    inputFile.open(input, std::ifstream::in);</div><div class="line"><a name="l00496"></a><span class="lineno">  496</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(inputFile, tempstring.c_str());</div><div class="line"><a name="l00497"></a><span class="lineno">  497</span>&#160;</div><div class="line"><a name="l00498"></a><span class="lineno">  498</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;stopCondition:&quot;</span>);</div><div class="line"><a name="l00499"></a><span class="lineno">  499</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#ad47617e2251da4eb87c56365e217c8e3">stopCondition</a>;</div><div class="line"><a name="l00500"></a><span class="lineno">  500</span>&#160;</div><div class="line"><a name="l00501"></a><span class="lineno">  501</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;printRejectReasons:&quot;</span>);</div><div class="line"><a name="l00502"></a><span class="lineno">  502</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a9b979283d8d40a1417171c28a1b1d23f">printRejectReasons</a>;</div><div class="line"><a name="l00503"></a><span class="lineno">  503</span>&#160;</div><div class="line"><a name="l00504"></a><span class="lineno">  504</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;domainSize:&quot;</span>);</div><div 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href="read_input_8cpp.html#a83faff54fdd582d6cfb84622ca160bf5">numOfLayers</a>];</div><div class="line"><a name="l00514"></a><span class="lineno">  514</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;layers:&quot;</span>);</div><div class="line"><a name="l00515"></a><span class="lineno">  515</span>&#160;</div><div class="line"><a name="l00516"></a><span class="lineno">  516</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;Number of Layers: &quot;</span> &lt;&lt; numOfLayers &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00517"></a><span class="lineno">  517</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; <a class="code" href="read_input_8cpp.html#a83faff54fdd582d6cfb84622ca160bf5">numOfLayers</a>; i++){</div><div class="line"><a name="l00518"></a><span class="lineno">  518</span>&#160;            <span class="keywordtype">int</span> idx = i*2;</div><div class="line"><a name="l00519"></a><span class="lineno">  519</span>&#160;            inputFile &gt;&gt; ch &gt;&gt; <a class="code" href="read_input_8cpp.html#a03ac7830eb87def8d67cc0c95b24ec82">layers</a>[idx] &gt;&gt; ch &gt;&gt; <a class="code" href="read_input_8cpp.html#a03ac7830eb87def8d67cc0c95b24ec82">layers</a>[idx+1] &gt;&gt; ch;</div><div class="line"><a name="l00520"></a><span class="lineno">  520</span>&#160;            std::cout&lt;&lt;<span class="stringliteral">&quot;    Layer &quot;</span>&lt;&lt;i+1&lt;&lt;<span class="stringliteral">&quot;{-z,+z}: {&quot;</span>&lt;&lt; <a class="code" href="read_input_8cpp.html#a03ac7830eb87def8d67cc0c95b24ec82">layers</a>[idx] &lt;&lt; <span class="stringliteral">&quot;,&quot;</span>&lt;&lt;<a class="code" href="read_input_8cpp.html#a03ac7830eb87def8d67cc0c95b24ec82">layers</a>[idx+1] &lt;&lt; <span 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526</span>&#160;</div><div class="line"><a name="l00527"></a><span class="lineno">  527</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;h:&quot;</span>);</div><div class="line"><a name="l00528"></a><span class="lineno">  528</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a8ee9be1b5aa75abae556de3088cba6d9">h</a>;</div><div class="line"><a name="l00529"></a><span class="lineno">  529</span>&#160;</div><div class="line"><a name="l00530"></a><span class="lineno">  530</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;disableFram:&quot;</span>);</div><div class="line"><a name="l00531"></a><span class="lineno">  531</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a0071fcf088e13e14d3cfa0c15e33e363">disableFram</a>;</div><div class="line"><a name="l00532"></a><span class="lineno">  532</span>&#160;</div><div class="line"><a name="l00533"></a><span class="lineno">  533</span>&#160;    <span class="keywordflow">if</span> (disableFram == <span class="keyword">true</span>) {</div><div class="line"><a name="l00534"></a><span class="lineno">  534</span>&#160;        std::cout&lt;&lt;<span class="stringliteral">&quot;\nFRAM IS DISABLED\n&quot;</span>;</div><div class="line"><a name="l00535"></a><span class="lineno">  535</span>&#160;    }</div><div class="line"><a name="l00536"></a><span class="lineno">  536</span>&#160;</div><div class="line"><a name="l00537"></a><span class="lineno">  537</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;tripleIntersections:&quot;</span>);</div><div class="line"><a name="l00538"></a><span class="lineno">  538</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#aa0b6ecd1182eec9769b157aa8387e32c">tripleIntersections</a>;</div><div class="line"><a name="l00539"></a><span class="lineno">  539</span>&#160;</div><div class="line"><a name="l00540"></a><span class="lineno">  540</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;forceLargeFractures:&quot;</span>);</div><div class="line"><a name="l00541"></a><span class="lineno">  541</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#aaf0d6444330f4a66638db81ca592e2a5">forceLargeFractures</a>;</div><div class="line"><a name="l00542"></a><span class="lineno">  542</span>&#160;</div><div class="line"><a name="l00543"></a><span class="lineno">  543</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;visualizationMode:&quot;</span>);</div><div class="line"><a name="l00544"></a><span class="lineno">  544</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#aa98b605ce677adf12fe97d6fa9076b1c">visualizationMode</a>;</div><div class="line"><a name="l00545"></a><span class="lineno">  545</span>&#160;</div><div class="line"><a name="l00546"></a><span class="lineno">  546</span>&#160;    <span class="keywordflow">if</span> (disableFram == <span class="keyword">true</span>){</div><div class="line"><a name="l00547"></a><span class="lineno">  547</span>&#160;        visualizationMode = 1;</div><div class="line"><a name="l00548"></a><span class="lineno">  548</span>&#160;    }</div><div class="line"><a name="l00549"></a><span class="lineno">  549</span>&#160;    </div><div class="line"><a name="l00550"></a><span class="lineno">  550</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;outputAllRadii:&quot;</span>);</div><div class="line"><a name="l00551"></a><span class="lineno">  551</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a6fc4e503b3c7fbcfbb51832ae2201e70">outputAllRadii</a>;</div><div class="line"><a name="l00552"></a><span class="lineno">  552</span>&#160;</div><div class="line"><a name="l00553"></a><span class="lineno">  553</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;outputFinalRadiiPerFamily:&quot;</span>);</div><div class="line"><a name="l00554"></a><span class="lineno">  554</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a1c0f1e135986f63c343fac357913481f">outputFinalRadiiPerFamily</a>;</div><div class="line"><a name="l00555"></a><span class="lineno">  555</span>&#160;</div><div class="line"><a name="l00556"></a><span class="lineno">  556</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;outputAcceptedRadiiPerFamily:&quot;</span>);</div><div class="line"><a name="l00557"></a><span class="lineno">  557</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a66471dd0571be27dea62906d930ef883">outputAcceptedRadiiPerFamily</a>;</div><div class="line"><a name="l00558"></a><span class="lineno">  558</span>&#160;</div><div class="line"><a name="l00559"></a><span class="lineno">  559</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;seed:&quot;</span>);</div><div class="line"><a name="l00560"></a><span class="lineno">  560</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#ae21f357c223957d36046a0d71cc6aed7">seed</a>;</div><div class="line"><a name="l00561"></a><span class="lineno">  561</span>&#160;</div><div class="line"><a name="l00562"></a><span class="lineno">  562</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;domainSizeIncrease:&quot;</span>);</div><div class="line"><a name="l00563"></a><span class="lineno">  563</span>&#160;    inputFile &gt;&gt; ch &gt;&gt; <a class="code" href="read_input_8cpp.html#aaa9154067587782d6e6eefc9652559a6">domainSizeIncrease</a>[0] &gt;&gt; ch &gt;&gt; <a class="code" href="read_input_8cpp.html#aaa9154067587782d6e6eefc9652559a6">domainSizeIncrease</a>[1] &gt;&gt; ch &gt;&gt; <a class="code" href="read_input_8cpp.html#aaa9154067587782d6e6eefc9652559a6">domainSizeIncrease</a>[2];</div><div class="line"><a name="l00564"></a><span class="lineno">  564</span>&#160;</div><div class="line"><a name="l00565"></a><span class="lineno">  565</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;keepOnlyLargestCluster:&quot;</span>);</div><div class="line"><a name="l00566"></a><span class="lineno">  566</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#aea02ddd6024599612f00034e17d4e66a">keepOnlyLargestCluster</a>;</div><div class="line"><a name="l00567"></a><span class="lineno">  567</span>&#160;</div><div class="line"><a name="l00568"></a><span class="lineno">  568</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;ignoreBoundaryFaces:&quot;</span>);</div><div class="line"><a name="l00569"></a><span class="lineno">  569</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#ada6852d4da13aa222e5b959bf71e89d4">ignoreBoundaryFaces</a>;</div><div class="line"><a name="l00570"></a><span class="lineno">  570</span>&#160;    </div><div class="line"><a name="l00571"></a><span class="lineno">  571</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;boundaryFaces:&quot;</span>);</div><div class="line"><a name="l00572"></a><span class="lineno">  572</span>&#160;    inputFile &gt;&gt;ch&gt;&gt;<a class="code" href="read_input_8cpp.html#a51aaedc2ddf86e5f1dba79003decadb2">boundaryFaces</a>[0]&gt;&gt;ch&gt;&gt;<a class="code" href="read_input_8cpp.html#a51aaedc2ddf86e5f1dba79003decadb2">boundaryFaces</a>[1]&gt;&gt;ch&gt;&gt;<a class="code" href="read_input_8cpp.html#a51aaedc2ddf86e5f1dba79003decadb2">boundaryFaces</a>[2]&gt;&gt;ch&gt;&gt;<a class="code" href="read_input_8cpp.html#a51aaedc2ddf86e5f1dba79003decadb2">boundaryFaces</a>[3]&gt;&gt;ch&gt;&gt;<a class="code" href="read_input_8cpp.html#a51aaedc2ddf86e5f1dba79003decadb2">boundaryFaces</a>[4]&gt;&gt;ch&gt;&gt;<a class="code" href="read_input_8cpp.html#a51aaedc2ddf86e5f1dba79003decadb2">boundaryFaces</a>[5];</div><div class="line"><a name="l00573"></a><span class="lineno">  573</span>&#160;</div><div class="line"><a name="l00574"></a><span class="lineno">  574</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;rejectsPerFracture:&quot;</span>);</div><div class="line"><a name="l00575"></a><span class="lineno">  575</span>&#160;    inputFile&gt;&gt;<a class="code" href="read_input_8cpp.html#ad29409829ae78f5f928f417a2a7b265b">rejectsPerFracture</a>;</div><div class="line"><a name="l00576"></a><span class="lineno">  576</span>&#160;</div><div class="line"><a name="l00577"></a><span class="lineno">  577</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;nFamRect:&quot;</span>);</div><div class="line"><a name="l00578"></a><span class="lineno">  578</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>;</div><div class="line"><a name="l00579"></a><span class="lineno">  579</span>&#160;</div><div class="line"><a name="l00580"></a><span class="lineno">  580</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;nFamEll:&quot;</span>);</div><div class="line"><a name="l00581"></a><span class="lineno">  581</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>;</div><div class="line"><a name="l00582"></a><span class="lineno">  582</span>&#160;</div><div class="line"><a name="l00583"></a><span class="lineno">  583</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;removeFracturesLessThan:&quot;</span>);</div><div class="line"><a name="l00584"></a><span class="lineno">  584</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a764fda4f24066351261eb6f777d2ff6c">removeFracturesLessThan</a>;</div><div class="line"><a name="l00585"></a><span class="lineno">  585</span>&#160;</div><div class="line"><a name="l00586"></a><span class="lineno">  586</span>&#160;    <span class="keywordflow">if</span> (nFamEll &gt; 0 || nFamRect &gt;0) {</div><div class="line"><a name="l00587"></a><span class="lineno">  587</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;famProb:&quot;</span>);</div><div class="line"><a name="l00588"></a><span class="lineno">  588</span>&#160;        <a class="code" href="read_input_8cpp.html#aeb1032cfdc6f748b280a4a0a59375d11">famProb</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[(nFamEll+<a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>)];</div><div class="line"><a name="l00589"></a><span class="lineno">  589</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#aeb1032cfdc6f748b280a4a0a59375d11">famProb</a>, (nFamEll+nFamRect));</div><div class="line"><a name="l00590"></a><span class="lineno">  590</span>&#160;</div><div class="line"><a name="l00591"></a><span class="lineno">  591</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;famProb:&quot;</span>);</div><div class="line"><a name="l00592"></a><span class="lineno">  592</span>&#160;        <a class="code" href="read_input_8cpp.html#adf0af844c6ea7273c4fdee84e0dda5c2">famProbOriginal</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[(nFamEll+<a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>)];</div><div class="line"><a name="l00593"></a><span class="lineno">  593</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#adf0af844c6ea7273c4fdee84e0dda5c2">famProbOriginal</a>, (nFamEll+nFamRect));</div><div class="line"><a name="l00594"></a><span class="lineno">  594</span>&#160;            </div><div class="line"><a name="l00595"></a><span class="lineno">  595</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;radiiListIncrease:&quot;</span>);</div><div class="line"><a name="l00596"></a><span class="lineno">  596</span>&#160;        inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#abd9fdedaba98f63d68fe3bb9d9098f63">radiiListIncrease</a>;</div><div class="line"><a name="l00597"></a><span class="lineno">  597</span>&#160;</div><div class="line"><a name="l00598"></a><span class="lineno">  598</span>&#160;    }</div><div class="line"><a name="l00599"></a><span class="lineno">  599</span>&#160;</div><div class="line"><a name="l00600"></a><span class="lineno">  600</span>&#160;</div><div class="line"><a name="l00601"></a><span class="lineno">  601</span>&#160;    <span class="keywordflow">if</span> (nFamEll &gt; 0) {</div><div class="line"><a name="l00602"></a><span class="lineno">  602</span>&#160;</div><div class="line"><a name="l00603"></a><span class="lineno">  603</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;ebetaDistribution:&quot;</span>);</div><div class="line"><a name="l00604"></a><span class="lineno">  604</span>&#160;        <a class="code" href="read_input_8cpp.html#a4888656752ebc389d0940c77e3c953ce">ebetaDistribution</a> = <span class="keyword">new</span> <span class="keywordtype">bool</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00605"></a><span class="lineno">  605</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a4888656752ebc389d0940c77e3c953ce">ebetaDistribution</a>, nFamEll);</div><div class="line"><a name="l00606"></a><span class="lineno">  606</span>&#160;</div><div class="line"><a name="l00607"></a><span class="lineno">  607</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;eLayer:&quot;</span>);</div><div class="line"><a name="l00608"></a><span class="lineno">  608</span>&#160;        <a class="code" href="read_input_8cpp.html#a2bd7a59b7575323479f4cdd95e84505e">eLayer</a> = <span class="keyword">new</span> <span class="keywordtype">int</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00609"></a><span class="lineno">  609</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a2bd7a59b7575323479f4cdd95e84505e">eLayer</a>, nFamEll);</div><div class="line"><a name="l00610"></a><span class="lineno">  610</span>&#160;</div><div class="line"><a name="l00611"></a><span class="lineno">  611</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;edistr:&quot;</span>);    </div><div class="line"><a name="l00612"></a><span class="lineno">  612</span>&#160;        <a class="code" href="read_input_8cpp.html#aad5e2582c7a771d1a6cb2428cf24b89f">edistr</a> = <span class="keyword">new</span> <span class="keywordtype">int</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00613"></a><span class="lineno">  613</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#aad5e2582c7a771d1a6cb2428cf24b89f">edistr</a>, nFamEll);</div><div class="line"><a name="l00614"></a><span class="lineno">  614</span>&#160;</div><div class="line"><a name="l00615"></a><span class="lineno">  615</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;easpect:&quot;</span>);</div><div class="line"><a name="l00616"></a><span class="lineno">  616</span>&#160;        <a class="code" href="read_input_8cpp.html#a61b52bf1bb1bb469d04455c26382cd1d">easpect</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00617"></a><span class="lineno">  617</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a61b52bf1bb1bb469d04455c26382cd1d">easpect</a>, nFamEll);</div><div class="line"><a name="l00618"></a><span class="lineno">  618</span>&#160;</div><div class="line"><a name="l00619"></a><span class="lineno">  619</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;enumPoints:&quot;</span>);</div><div class="line"><a name="l00620"></a><span class="lineno">  620</span>&#160;        <a class="code" href="read_input_8cpp.html#a11c46dd95801a4a0c48c921c5252cf40">enumPoints</a> = <span class="keyword">new</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00621"></a><span class="lineno">  621</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile,<a class="code" href="read_input_8cpp.html#a11c46dd95801a4a0c48c921c5252cf40">enumPoints</a>, nFamEll);</div><div class="line"><a name="l00622"></a><span class="lineno">  622</span>&#160;</div><div class="line"><a name="l00623"></a><span class="lineno">  623</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;eAngleOption:&quot;</span>);</div><div class="line"><a name="l00624"></a><span class="lineno">  624</span>&#160;        inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a41d6b1e6a8db2ce174f09457a7703353">eAngleOption</a>;</div><div class="line"><a name="l00625"></a><span class="lineno">  625</span>&#160;</div><div class="line"><a name="l00626"></a><span class="lineno">  626</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;etheta:&quot;</span>);</div><div class="line"><a name="l00627"></a><span class="lineno">  627</span>&#160;        <a class="code" href="read_input_8cpp.html#a667cefc35ba997c50191b0214e91b097">etheta</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00628"></a><span class="lineno">  628</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a667cefc35ba997c50191b0214e91b097">etheta</a>, nFamEll);</div><div class="line"><a name="l00629"></a><span class="lineno">  629</span>&#160;</div><div class="line"><a name="l00630"></a><span class="lineno">  630</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;ephi:&quot;</span>);</div><div class="line"><a name="l00631"></a><span class="lineno">  631</span>&#160;        <a class="code" href="read_input_8cpp.html#aae080e946350166ba15f5dc2568b3dcc">ephi</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00632"></a><span class="lineno">  632</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#aae080e946350166ba15f5dc2568b3dcc">ephi</a>, nFamEll);</div><div class="line"><a name="l00633"></a><span class="lineno">  633</span>&#160;</div><div class="line"><a name="l00634"></a><span class="lineno">  634</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;ebeta:&quot;</span>);</div><div class="line"><a name="l00635"></a><span class="lineno">  635</span>&#160;        <a class="code" href="read_input_8cpp.html#ad8b6651631c9b3d5b7ab9862a74b56af">ebeta</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00636"></a><span class="lineno">  636</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#ad8b6651631c9b3d5b7ab9862a74b56af">ebeta</a>, nFamEll);</div><div class="line"><a name="l00637"></a><span class="lineno">  637</span>&#160;</div><div class="line"><a name="l00638"></a><span class="lineno">  638</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;ekappa:&quot;</span>);</div><div class="line"><a name="l00639"></a><span class="lineno">  639</span>&#160;        <a class="code" href="read_input_8cpp.html#ad92b299fd65194586ab189adff1d23cb">ekappa</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00640"></a><span class="lineno">  640</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#ad92b299fd65194586ab189adff1d23cb">ekappa</a>, nFamEll);</div><div class="line"><a name="l00641"></a><span class="lineno">  641</span>&#160;</div><div class="line"><a name="l00642"></a><span class="lineno">  642</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;eLogMean:&quot;</span>);</div><div class="line"><a name="l00643"></a><span class="lineno">  643</span>&#160;        <a class="code" href="read_input_8cpp.html#a1698a1d763883d52c0083b7d6998f122">eLogMean</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00644"></a><span class="lineno">  644</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a1698a1d763883d52c0083b7d6998f122">eLogMean</a>, nFamEll);</div><div class="line"><a name="l00645"></a><span class="lineno">  645</span>&#160;</div><div class="line"><a name="l00646"></a><span class="lineno">  646</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;esd:&quot;</span>);</div><div class="line"><a name="l00647"></a><span class="lineno">  647</span>&#160;        <a class="code" href="read_input_8cpp.html#aa7a530245765aced399fbc4b4c4fefd7">esd</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00648"></a><span class="lineno">  648</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#aa7a530245765aced399fbc4b4c4fefd7">esd</a>, nFamEll);</div><div class="line"><a name="l00649"></a><span class="lineno">  649</span>&#160;</div><div class="line"><a name="l00650"></a><span class="lineno">  650</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;eExpMean:&quot;</span>);</div><div class="line"><a name="l00651"></a><span class="lineno">  651</span>&#160;        <a class="code" href="read_input_8cpp.html#ae820757151eb1b6faf235e2856d740bf">eExpMean</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00652"></a><span class="lineno">  652</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#ae820757151eb1b6faf235e2856d740bf">eExpMean</a>, nFamEll);</div><div class="line"><a name="l00653"></a><span class="lineno">  653</span>&#160;        </div><div class="line"><a name="l00654"></a><span class="lineno">  654</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;emin:&quot;</span>);</div><div class="line"><a name="l00655"></a><span class="lineno">  655</span>&#160;        <a class="code" href="read_input_8cpp.html#ae8063269aec74ddb855e2df228706c4f">emin</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00656"></a><span class="lineno">  656</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#ae8063269aec74ddb855e2df228706c4f">emin</a>, nFamEll);</div><div class="line"><a name="l00657"></a><span class="lineno">  657</span>&#160;</div><div class="line"><a name="l00658"></a><span class="lineno">  658</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;emax:&quot;</span>);</div><div class="line"><a name="l00659"></a><span class="lineno">  659</span>&#160;        <a class="code" href="read_input_8cpp.html#a672ea0daa9847198dd1ab922ca7106af">emax</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00660"></a><span class="lineno">  660</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a672ea0daa9847198dd1ab922ca7106af">emax</a>, nFamEll);</div><div class="line"><a name="l00661"></a><span class="lineno">  661</span>&#160;</div><div class="line"><a name="l00662"></a><span class="lineno">  662</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;ealpha:&quot;</span>);</div><div class="line"><a name="l00663"></a><span class="lineno">  663</span>&#160;        <a class="code" href="read_input_8cpp.html#aebd0bd52450df08712b3cd41dd3d103a">ealpha</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00664"></a><span class="lineno">  664</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#aebd0bd52450df08712b3cd41dd3d103a">ealpha</a>, nFamEll);</div><div class="line"><a name="l00665"></a><span class="lineno">  665</span>&#160;</div><div class="line"><a name="l00666"></a><span class="lineno">  666</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;econst:&quot;</span>);</div><div class="line"><a name="l00667"></a><span class="lineno">  667</span>&#160;        <a class="code" href="read_input_8cpp.html#ab28ea1d92036bb7e7c7daa0b48e891c8">econst</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00668"></a><span class="lineno">  668</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#ab28ea1d92036bb7e7c7daa0b48e891c8">econst</a>, nFamEll);</div><div class="line"><a name="l00669"></a><span class="lineno">  669</span>&#160;        </div><div class="line"><a name="l00670"></a><span class="lineno">  670</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;eLogMin:&quot;</span>);</div><div class="line"><a name="l00671"></a><span class="lineno">  671</span>&#160;        <a class="code" href="read_input_8cpp.html#a7f881b0651c79069a38dcd54f9e53c22">eLogMin</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00672"></a><span class="lineno">  672</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a7f881b0651c79069a38dcd54f9e53c22">eLogMin</a>, nFamEll);</div><div class="line"><a name="l00673"></a><span class="lineno">  673</span>&#160;        </div><div class="line"><a name="l00674"></a><span class="lineno">  674</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;eLogMax:&quot;</span>);</div><div class="line"><a name="l00675"></a><span class="lineno">  675</span>&#160;        <a class="code" href="read_input_8cpp.html#a426530b67e9c11fe1c8a2aff96928622">eLogMax</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00676"></a><span class="lineno">  676</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a426530b67e9c11fe1c8a2aff96928622">eLogMax</a>, nFamEll);</div><div class="line"><a name="l00677"></a><span class="lineno">  677</span>&#160;        </div><div class="line"><a name="l00678"></a><span class="lineno">  678</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;eExpMin:&quot;</span>);</div><div class="line"><a name="l00679"></a><span class="lineno">  679</span>&#160;        <a class="code" href="read_input_8cpp.html#a103ff44476536ae22f050772fe20bbfe">eExpMin</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00680"></a><span class="lineno">  680</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a103ff44476536ae22f050772fe20bbfe">eExpMin</a>, nFamEll);</div><div class="line"><a name="l00681"></a><span class="lineno">  681</span>&#160; </div><div class="line"><a name="l00682"></a><span class="lineno">  682</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;eExpMax:&quot;</span>);</div><div class="line"><a name="l00683"></a><span class="lineno">  683</span>&#160;        <a class="code" href="read_input_8cpp.html#aafcda2db9237d5d60b08fb6c302362ff">eExpMax</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00684"></a><span class="lineno">  684</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#aafcda2db9237d5d60b08fb6c302362ff">eExpMax</a>, nFamEll);</div><div class="line"><a name="l00685"></a><span class="lineno">  685</span>&#160;               </div><div class="line"><a name="l00686"></a><span class="lineno">  686</span>&#160;        </div><div class="line"><a name="l00687"></a><span class="lineno">  687</span>&#160;        <span class="keywordflow">if</span> (stopCondition == 1) {</div><div class="line"><a name="l00688"></a><span class="lineno">  688</span>&#160;            <span class="comment">// Get temp array for ellipse p32 targets </span></div><div class="line"><a name="l00689"></a><span class="lineno">  689</span>&#160;            <span class="comment">// Used to simplify initialization of shape family structures below</span></div><div class="line"><a name="l00690"></a><span class="lineno">  690</span>&#160;            <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;e_p32Targets:&quot;</span>);</div><div class="line"><a name="l00691"></a><span class="lineno">  691</span>&#160;            <a class="code" href="read_input_8cpp.html#a3c659d4b1e5810ea1f21035b2444d9cd">e_p32Targets</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>];</div><div class="line"><a name="l00692"></a><span class="lineno">  692</span>&#160;            <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a3c659d4b1e5810ea1f21035b2444d9cd">e_p32Targets</a>, nFamEll);</div><div class="line"><a name="l00693"></a><span class="lineno">  693</span>&#160;        }</div><div class="line"><a name="l00694"></a><span class="lineno">  694</span>&#160;    }</div><div class="line"><a name="l00695"></a><span class="lineno">  695</span>&#160;</div><div class="line"><a name="l00696"></a><span class="lineno">  696</span>&#160;    </div><div class="line"><a name="l00697"></a><span class="lineno">  697</span>&#160;        <span class="comment">// Distribution counters</span></div><div class="line"><a name="l00698"></a><span class="lineno">  698</span>&#160;        <span class="keywordtype">int</span> shape1 = 0; <span class="comment">//longnormal dist counter</span></div><div class="line"><a name="l00699"></a><span class="lineno">  699</span>&#160;        <span class="keywordtype">int</span> shape2 = 0; <span class="comment">//truncated power-law dist counter</span></div><div class="line"><a name="l00700"></a><span class="lineno">  700</span>&#160;        <span class="keywordtype">int</span> shape3 = 0; <span class="comment">//exponential dist counter</span></div><div class="line"><a name="l00701"></a><span class="lineno">  701</span>&#160;        <span class="keywordtype">int</span> shape4 = 0; <span class="comment">//constant dist counter</span></div><div class="line"><a name="l00702"></a><span class="lineno">  702</span>&#160;        <span class="keywordtype">int</span> betaCount = 0;</div><div class="line"><a name="l00703"></a><span class="lineno">  703</span>&#160;</div><div class="line"><a name="l00704"></a><span class="lineno">  704</span>&#160;        <span class="comment">// Create shape strucutres from data gathered above</span></div><div class="line"><a name="l00705"></a><span class="lineno">  705</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>; i++){</div><div class="line"><a name="l00706"></a><span class="lineno">  706</span>&#160;        <span class="keyword">struct </span><a class="code" href="struct_shape.html">Shape</a> newShapeFam;</div><div class="line"><a name="l00707"></a><span class="lineno">  707</span>&#160;</div><div class="line"><a name="l00708"></a><span class="lineno">  708</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#a766d04a69991e931ba2176a927c747cb">shapeFamily</a> = 0; <span class="comment">// shapFam = 0 = ellipse, 1 = rect</span></div><div class="line"><a name="l00709"></a><span class="lineno">  709</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#a01b965e10318731a32fa68f0c87c9f20">distributionType</a> = <a class="code" href="read_input_8cpp.html#aad5e2582c7a771d1a6cb2428cf24b89f">edistr</a>[i];</div><div class="line"><a name="l00710"></a><span class="lineno">  710</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#a463c3c0ba9465daaac854eaeccdb3341">numPoints</a> = <a class="code" href="read_input_8cpp.html#a11c46dd95801a4a0c48c921c5252cf40">enumPoints</a>[i];</div><div class="line"><a name="l00711"></a><span class="lineno">  711</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#a6126c3f7cd57df03350d4b58b844bba1">aspectRatio</a> = <a class="code" href="read_input_8cpp.html#a61b52bf1bb1bb469d04455c26382cd1d">easpect</a>[i];</div><div class="line"><a name="l00712"></a><span class="lineno">  712</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#a27f8a00841e3cc14fca05b44085d79f6">theta</a> = <a class="code" href="read_input_8cpp.html#a667cefc35ba997c50191b0214e91b097">etheta</a>[i];</div><div class="line"><a name="l00713"></a><span class="lineno">  713</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#a858d838d438a5288e71902722119cb68">phi</a> = <a class="code" href="read_input_8cpp.html#aae080e946350166ba15f5dc2568b3dcc">ephi</a>[i];</div><div class="line"><a name="l00714"></a><span class="lineno">  714</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#abbf3338ea5ef5e026eed0423cc69dc7f">kappa</a> = <a class="code" href="read_input_8cpp.html#ad92b299fd65194586ab189adff1d23cb">ekappa</a>[i];</div><div class="line"><a name="l00715"></a><span class="lineno">  715</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#aab81de1625d7e318b0c39a99186118ff">angleOption</a> = <a class="code" href="read_input_8cpp.html#a41d6b1e6a8db2ce174f09457a7703353">eAngleOption</a>;</div><div class="line"><a name="l00716"></a><span class="lineno">  716</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#a0ce256fc0e226ea6559786a2ae9d007f">layer</a> = <a class="code" href="read_input_8cpp.html#a2bd7a59b7575323479f4cdd95e84505e">eLayer</a>[i];</div><div class="line"><a name="l00717"></a><span class="lineno">  717</span>&#160;        </div><div class="line"><a name="l00718"></a><span class="lineno">  718</span>&#160;        <a class="code" href="generating_points_8cpp.html#a15a7dfd1320eb3c7c3cc2c53ed4ba2c1">generateTheta</a>(newShapeFam.<a class="code" href="struct_shape.html#a0d1fd1363bacd61560809dc379d17363">thetaList</a>, newShapeFam.<a class="code" href="struct_shape.html#a6126c3f7cd57df03350d4b58b844bba1">aspectRatio</a>, newShapeFam.<a class="code" href="struct_shape.html#a463c3c0ba9465daaac854eaeccdb3341">numPoints</a>);</div><div class="line"><a name="l00719"></a><span class="lineno">  719</span>&#160;        </div><div class="line"><a name="l00720"></a><span class="lineno">  720</span>&#160;</div><div class="line"><a name="l00721"></a><span class="lineno">  721</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="read_input_8cpp.html#a4888656752ebc389d0940c77e3c953ce">ebetaDistribution</a>[i] == 1 ){ <span class="comment">// If constant user defined beta option</span></div><div class="line"><a name="l00722"></a><span class="lineno">  722</span>&#160;            newShapeFam.<a class="code" href="struct_shape.html#a874e4756ad81f2e6f135e066bb0b4347">betaDistribution</a> = 1;</div><div class="line"><a name="l00723"></a><span class="lineno">  723</span>&#160;            newShapeFam.<a class="code" href="struct_shape.html#ab48639160dae4dfe2e3a0a55ffa5a691">beta</a> = <a class="code" href="read_input_8cpp.html#ad8b6651631c9b3d5b7ab9862a74b56af">ebeta</a>[betaCount];</div><div class="line"><a name="l00724"></a><span class="lineno">  724</span>&#160;            betaCount++; </div><div class="line"><a name="l00725"></a><span class="lineno">  725</span>&#160;        }</div><div class="line"><a name="l00726"></a><span class="lineno">  726</span>&#160;        <span class="keywordflow">else</span> {</div><div class="line"><a name="l00727"></a><span class="lineno">  727</span>&#160;            newShapeFam.<a class="code" href="struct_shape.html#a874e4756ad81f2e6f135e066bb0b4347">betaDistribution</a> = 0;</div><div class="line"><a name="l00728"></a><span class="lineno">  728</span>&#160;        }</div><div class="line"><a name="l00729"></a><span class="lineno">  729</span>&#160;</div><div class="line"><a name="l00730"></a><span class="lineno">  730</span>&#160;        <span class="comment">// dist options:1 = lognormal, 2= truncated power-law, 3= exponential, 4=constant</span></div><div class="line"><a name="l00731"></a><span class="lineno">  731</span>&#160;        <span class="keywordflow">switch</span> (<a class="code" href="read_input_8cpp.html#aad5e2582c7a771d1a6cb2428cf24b89f">edistr</a>[i]) {</div><div class="line"><a name="l00732"></a><span class="lineno">  732</span>&#160;            <span class="keywordflow">case</span> 1: <span class="comment">// Lognormal</span></div><div class="line"><a name="l00733"></a><span class="lineno">  733</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#a0b4a5b43302221719982e9b5bbd9cbae">mean</a> = <a class="code" href="read_input_8cpp.html#a1698a1d763883d52c0083b7d6998f122">eLogMean</a>[shape1];</div><div class="line"><a name="l00734"></a><span class="lineno">  734</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#ad3faf14baf1d50b97a8ae243721213af">sd</a> = <a class="code" href="read_input_8cpp.html#aa7a530245765aced399fbc4b4c4fefd7">esd</a>[shape1];</div><div class="line"><a name="l00735"></a><span class="lineno">  735</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#a3ce69d18bbb29c85a319ccbdb62d70f8">logMin</a> = <a class="code" href="read_input_8cpp.html#a7f881b0651c79069a38dcd54f9e53c22">eLogMin</a>[shape1];</div><div class="line"><a name="l00736"></a><span class="lineno">  736</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#a58884d0543597d129cd6c118d2c2ad61">logMax</a> = <a class="code" href="read_input_8cpp.html#a426530b67e9c11fe1c8a2aff96928622">eLogMax</a>[shape1];</div><div class="line"><a name="l00737"></a><span class="lineno">  737</span>&#160;                shape1++;</div><div class="line"><a name="l00738"></a><span class="lineno">  738</span>&#160;                <span class="keywordflow">break</span>;</div><div class="line"><a name="l00739"></a><span class="lineno">  739</span>&#160;            <span class="keywordflow">case</span> 2: <span class="comment">// Truncated power-law</span></div><div class="line"><a name="l00740"></a><span class="lineno">  740</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#a59e4810d42b9b0cc47e6a50afea0741b">min</a> = <a class="code" href="read_input_8cpp.html#ae8063269aec74ddb855e2df228706c4f">emin</a>[shape2];</div><div class="line"><a name="l00741"></a><span class="lineno">  741</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#ac674a8084da0711a93fb48d976467697">max</a> = <a class="code" href="read_input_8cpp.html#a672ea0daa9847198dd1ab922ca7106af">emax</a>[shape2];</div><div class="line"><a name="l00742"></a><span class="lineno">  742</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#a66a52f9200f362ec1e754c5211e6ba6c">alpha</a> = <a class="code" href="read_input_8cpp.html#aebd0bd52450df08712b3cd41dd3d103a">ealpha</a>[shape2];</div><div class="line"><a name="l00743"></a><span class="lineno">  743</span>&#160;                shape2++;</div><div class="line"><a name="l00744"></a><span class="lineno">  744</span>&#160;                <span class="keywordflow">break</span>;</div><div class="line"><a name="l00745"></a><span class="lineno">  745</span>&#160;            <span class="keywordflow">case</span> 3:</div><div class="line"><a name="l00746"></a><span class="lineno">  746</span>&#160;</div><div class="line"><a name="l00747"></a><span class="lineno">  747</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#aac849c13ef52d8ac83e2c9b1f6b73d4b">expMean</a> = <a class="code" href="read_input_8cpp.html#ae820757151eb1b6faf235e2856d740bf">eExpMean</a>[shape3];</div><div class="line"><a name="l00748"></a><span class="lineno">  748</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#a99702dd591a365a549aa5cc9537046a0">expLambda</a> = 1/<a class="code" href="read_input_8cpp.html#ae820757151eb1b6faf235e2856d740bf">eExpMean</a>[shape3];</div><div class="line"><a name="l00749"></a><span class="lineno">  749</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#a8ab95adcaf91af7ef364bdaeca382154">expMin</a> = <a class="code" href="read_input_8cpp.html#a103ff44476536ae22f050772fe20bbfe">eExpMin</a>[shape3];</div><div class="line"><a name="l00750"></a><span class="lineno">  750</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#adcf523f838d1c624bd9d13931a342e29">expMax</a> = <a class="code" href="read_input_8cpp.html#aafcda2db9237d5d60b08fb6c302362ff">eExpMax</a>[shape3];</div><div class="line"><a name="l00751"></a><span class="lineno">  751</span>&#160;                shape3++;</div><div class="line"><a name="l00752"></a><span class="lineno">  752</span>&#160;                <span class="keywordflow">break</span>;</div><div class="line"><a name="l00753"></a><span class="lineno">  753</span>&#160;            <span class="keywordflow">case</span> 4:</div><div class="line"><a name="l00754"></a><span class="lineno">  754</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#ae1d2c2e5ad0273aed7474f3c4f7b8b7c">constRadi</a> = <a class="code" href="read_input_8cpp.html#ab28ea1d92036bb7e7c7daa0b48e891c8">econst</a>[shape4];</div><div class="line"><a name="l00755"></a><span class="lineno">  755</span>&#160;                shape4++;</div><div class="line"><a name="l00756"></a><span class="lineno">  756</span>&#160;                <span class="keywordflow">break</span>;</div><div class="line"><a name="l00757"></a><span class="lineno">  757</span>&#160;        }</div><div class="line"><a name="l00758"></a><span class="lineno">  758</span>&#160;        </div><div class="line"><a name="l00759"></a><span class="lineno">  759</span>&#160;        <span class="keywordflow">if</span> (stopCondition == 1){    </div><div class="line"><a name="l00760"></a><span class="lineno">  760</span>&#160;            newShapeFam.<a class="code" href="struct_shape.html#acb8154ed9d7be6b37a7b83f44efb0bfb">p32Target</a> = <a class="code" href="read_input_8cpp.html#a3c659d4b1e5810ea1f21035b2444d9cd">e_p32Targets</a>[i];</div><div class="line"><a name="l00761"></a><span class="lineno">  761</span>&#160;        }</div><div class="line"><a name="l00762"></a><span class="lineno">  762</span>&#160;        </div><div class="line"><a name="l00763"></a><span class="lineno">  763</span>&#160;        <span class="comment">// Save shape family to perminant array</span></div><div class="line"><a name="l00764"></a><span class="lineno">  764</span>&#160;        shapeFamily.push_back(newShapeFam);</div><div class="line"><a name="l00765"></a><span class="lineno">  765</span>&#160;</div><div class="line"><a name="l00766"></a><span class="lineno">  766</span>&#160;    }</div><div class="line"><a name="l00767"></a><span class="lineno">  767</span>&#160;    </div><div class="line"><a name="l00768"></a><span class="lineno">  768</span>&#160;    <span class="keywordflow">if</span> (nFamEll &gt; 0 ) {</div><div class="line"><a name="l00769"></a><span class="lineno">  769</span>&#160;        <span class="comment">// Can now delete/free the memory for these arrays</span></div><div class="line"><a name="l00770"></a><span class="lineno">  770</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a4888656752ebc389d0940c77e3c953ce">ebetaDistribution</a>;</div><div class="line"><a name="l00771"></a><span class="lineno">  771</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#aad5e2582c7a771d1a6cb2428cf24b89f">edistr</a>;</div><div class="line"><a name="l00772"></a><span class="lineno">  772</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a61b52bf1bb1bb469d04455c26382cd1d">easpect</a>;</div><div class="line"><a name="l00773"></a><span class="lineno">  773</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a11c46dd95801a4a0c48c921c5252cf40">enumPoints</a>;</div><div class="line"><a name="l00774"></a><span class="lineno">  774</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a667cefc35ba997c50191b0214e91b097">etheta</a>;</div><div class="line"><a name="l00775"></a><span class="lineno">  775</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#aae080e946350166ba15f5dc2568b3dcc">ephi</a>;</div><div class="line"><a name="l00776"></a><span class="lineno">  776</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#ad8b6651631c9b3d5b7ab9862a74b56af">ebeta</a>;</div><div class="line"><a name="l00777"></a><span class="lineno">  777</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#ad92b299fd65194586ab189adff1d23cb">ekappa</a>;</div><div class="line"><a name="l00778"></a><span class="lineno">  778</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a1698a1d763883d52c0083b7d6998f122">eLogMean</a>;</div><div class="line"><a name="l00779"></a><span class="lineno">  779</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#aa7a530245765aced399fbc4b4c4fefd7">esd</a>;</div><div class="line"><a name="l00780"></a><span class="lineno">  780</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#ae820757151eb1b6faf235e2856d740bf">eExpMean</a>;</div><div class="line"><a name="l00781"></a><span class="lineno">  781</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#ae8063269aec74ddb855e2df228706c4f">emin</a>;</div><div class="line"><a name="l00782"></a><span class="lineno">  782</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a672ea0daa9847198dd1ab922ca7106af">emax</a>;</div><div class="line"><a name="l00783"></a><span class="lineno">  783</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#aebd0bd52450df08712b3cd41dd3d103a">ealpha</a>;</div><div class="line"><a name="l00784"></a><span class="lineno">  784</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#ab28ea1d92036bb7e7c7daa0b48e891c8">econst</a>;</div><div class="line"><a name="l00785"></a><span class="lineno">  785</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a2bd7a59b7575323479f4cdd95e84505e">eLayer</a>;</div><div class="line"><a name="l00786"></a><span class="lineno">  786</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a7f881b0651c79069a38dcd54f9e53c22">eLogMin</a>;</div><div class="line"><a name="l00787"></a><span class="lineno">  787</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a426530b67e9c11fe1c8a2aff96928622">eLogMax</a>;</div><div class="line"><a name="l00788"></a><span class="lineno">  788</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a103ff44476536ae22f050772fe20bbfe">eExpMin</a>;</div><div class="line"><a name="l00789"></a><span class="lineno">  789</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#aafcda2db9237d5d60b08fb6c302362ff">eExpMax</a>;</div><div class="line"><a name="l00790"></a><span class="lineno">  790</span>&#160;        </div><div class="line"><a name="l00791"></a><span class="lineno">  791</span>&#160;        <span class="keywordflow">if</span> (stopCondition == 1){ </div><div class="line"><a name="l00792"></a><span class="lineno">  792</span>&#160;            <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a3c659d4b1e5810ea1f21035b2444d9cd">e_p32Targets</a>;</div><div class="line"><a name="l00793"></a><span class="lineno">  793</span>&#160;        }</div><div class="line"><a name="l00794"></a><span class="lineno">  794</span>&#160;    }</div><div class="line"><a name="l00795"></a><span class="lineno">  795</span>&#160;</div><div class="line"><a name="l00796"></a><span class="lineno">  796</span>&#160;</div><div class="line"><a name="l00797"></a><span class="lineno">  797</span>&#160;    <span class="keywordflow">if</span> (nFamRect &gt;0) {</div><div class="line"><a name="l00798"></a><span class="lineno">  798</span>&#160;</div><div class="line"><a name="l00799"></a><span class="lineno">  799</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;rbetaDistribution:&quot;</span>);</div><div class="line"><a name="l00800"></a><span class="lineno">  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name="l00820"></a><span class="lineno">  820</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#af7799f743bff7994bf1c3f13c06768f7">rtheta</a>, nFamRect);</div><div class="line"><a name="l00821"></a><span class="lineno">  821</span>&#160;</div><div class="line"><a name="l00822"></a><span class="lineno">  822</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;rphi:&quot;</span>);</div><div class="line"><a name="l00823"></a><span class="lineno">  823</span>&#160;        <a class="code" href="read_input_8cpp.html#a3e4ab90db603394c70bac5bb28d17642">rphi</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>];</div><div class="line"><a name="l00824"></a><span class="lineno">  824</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a3e4ab90db603394c70bac5bb28d17642">rphi</a>, nFamRect);</div><div class="line"><a name="l00825"></a><span class="lineno">  825</span>&#160;</div><div class="line"><a name="l00826"></a><span class="lineno">  826</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;rbeta:&quot;</span>);</div><div class="line"><a name="l00827"></a><span class="lineno">  827</span>&#160;        <a class="code" href="read_input_8cpp.html#ab3b0fb1e4803a4ccb26d76feff92d66f">rbeta</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>];</div><div class="line"><a name="l00828"></a><span class="lineno">  828</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#ab3b0fb1e4803a4ccb26d76feff92d66f">rbeta</a>, nFamRect);</div><div class="line"><a name="l00829"></a><span class="lineno">  829</span>&#160;</div><div class="line"><a name="l00830"></a><span class="lineno">  830</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;rkappa:&quot;</span>);</div><div class="line"><a name="l00831"></a><span class="lineno">  831</span>&#160;        <a class="code" href="read_input_8cpp.html#a06d46fed07577f154dc95f3429630eab">rkappa</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>];</div><div class="line"><a name="l00832"></a><span class="lineno">  832</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a06d46fed07577f154dc95f3429630eab">rkappa</a>, nFamRect);</div><div class="line"><a name="l00833"></a><span class="lineno">  833</span>&#160;</div><div class="line"><a name="l00834"></a><span class="lineno">  834</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;rLogMean:&quot;</span>);</div><div class="line"><a name="l00835"></a><span class="lineno">  835</span>&#160;        <a class="code" href="read_input_8cpp.html#a707ee63e148affd4919ba06f571f4900">rLogMean</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>];</div><div class="line"><a name="l00836"></a><span class="lineno">  836</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a707ee63e148affd4919ba06f571f4900">rLogMean</a>, nFamRect);</div><div class="line"><a name="l00837"></a><span class="lineno">  837</span>&#160;</div><div class="line"><a name="l00838"></a><span class="lineno">  838</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;rsd:&quot;</span>);</div><div class="line"><a name="l00839"></a><span class="lineno">  839</span>&#160;        <a class="code" href="read_input_8cpp.html#adf92ce38547577a99b68dfd3f07b7d5a">rsd</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>];</div><div class="line"><a name="l00840"></a><span class="lineno">  840</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#adf92ce38547577a99b68dfd3f07b7d5a">rsd</a>, nFamRect);</div><div class="line"><a name="l00841"></a><span class="lineno">  841</span>&#160;</div><div class="line"><a name="l00842"></a><span class="lineno">  842</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;rmin:&quot;</span>);</div><div class="line"><a name="l00843"></a><span class="lineno">  843</span>&#160;        <a class="code" href="read_input_8cpp.html#ae63e451c9aec7d1dd4927f49fd9ebe5b">rmin</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>];</div><div class="line"><a name="l00844"></a><span class="lineno">  844</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#ae63e451c9aec7d1dd4927f49fd9ebe5b">rmin</a>, nFamRect);</div><div class="line"><a name="l00845"></a><span class="lineno">  845</span>&#160;</div><div class="line"><a name="l00846"></a><span class="lineno">  846</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;rmax:&quot;</span>);</div><div class="line"><a name="l00847"></a><span class="lineno">  847</span>&#160;        <a class="code" href="read_input_8cpp.html#aec3e303441f7bdaf97d3e9dcfc6427cf">rmax</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>];</div><div class="line"><a name="l00848"></a><span class="lineno">  848</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#aec3e303441f7bdaf97d3e9dcfc6427cf">rmax</a>, nFamRect);</div><div class="line"><a name="l00849"></a><span class="lineno">  849</span>&#160;</div><div class="line"><a name="l00850"></a><span class="lineno">  850</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;ralpha:&quot;</span>);</div><div class="line"><a name="l00851"></a><span class="lineno">  851</span>&#160;        <a class="code" href="read_input_8cpp.html#aa475379828be0fec5845fcf40a010e7e">ralpha</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>];</div><div class="line"><a name="l00852"></a><span class="lineno">  852</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#aa475379828be0fec5845fcf40a010e7e">ralpha</a>, nFamRect);</div><div class="line"><a name="l00853"></a><span class="lineno">  853</span>&#160;</div><div class="line"><a name="l00854"></a><span class="lineno">  854</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;rExpMean:&quot;</span>);</div><div class="line"><a name="l00855"></a><span class="lineno">  855</span>&#160;        <a class="code" href="read_input_8cpp.html#a5e07ea712b5e43f8bca080f93ad86e3f">rExpMean</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>];</div><div class="line"><a name="l00856"></a><span class="lineno">  856</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a5e07ea712b5e43f8bca080f93ad86e3f">rExpMean</a>, nFamRect);</div><div class="line"><a name="l00857"></a><span class="lineno">  857</span>&#160;               </div><div class="line"><a name="l00858"></a><span class="lineno">  858</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;rconst:&quot;</span>);</div><div class="line"><a name="l00859"></a><span class="lineno">  859</span>&#160;        <a class="code" href="read_input_8cpp.html#a2cc23f61f56f17d18da1c225a8e3ea9b">rconst</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>];</div><div 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class="line"><a name="l00868"></a><span class="lineno">  868</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a74df85297c0276a08a9629c806c8cfb3">rLogMax</a>, nFamRect);</div><div class="line"><a name="l00869"></a><span class="lineno">  869</span>&#160;        </div><div class="line"><a name="l00870"></a><span class="lineno">  870</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;rExpMin:&quot;</span>);</div><div class="line"><a name="l00871"></a><span class="lineno">  871</span>&#160;        <a class="code" href="read_input_8cpp.html#a117cb72d9e60a8d11bb8a187d91314e1">rExpMin</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>];</div><div class="line"><a name="l00872"></a><span class="lineno">  872</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a117cb72d9e60a8d11bb8a187d91314e1">rExpMin</a>, nFamRect);</div><div class="line"><a name="l00873"></a><span class="lineno">  873</span>&#160;        </div><div class="line"><a name="l00874"></a><span class="lineno">  874</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;rExpMax:&quot;</span>);</div><div class="line"><a name="l00875"></a><span class="lineno">  875</span>&#160;        <a class="code" href="read_input_8cpp.html#a6eb19c17be97a0cb87c6edec074fe77c">rExpMax</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>];</div><div class="line"><a name="l00876"></a><span class="lineno">  876</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a6eb19c17be97a0cb87c6edec074fe77c">rExpMax</a>, nFamRect);</div><div class="line"><a name="l00877"></a><span class="lineno">  877</span>&#160;</div><div class="line"><a name="l00878"></a><span class="lineno">  878</span>&#160;        <span class="keywordflow">if</span> (stopCondition == 1) {    </div><div class="line"><a name="l00879"></a><span class="lineno">  879</span>&#160;            <span class="comment">// Get temp array for rectangle p32 targets, </span></div><div class="line"><a name="l00880"></a><span class="lineno">  880</span>&#160;            <span class="comment">// Used to simplify initialization of shape family structures below</span></div><div class="line"><a name="l00881"></a><span class="lineno">  881</span>&#160;            <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;r_p32Targets:&quot;</span>);</div><div class="line"><a name="l00882"></a><span class="lineno">  882</span>&#160;            <a class="code" href="read_input_8cpp.html#a134553e238f08cfa5e1dcf95d19a55a2">r_p32Targets</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>];</div><div class="line"><a name="l00883"></a><span class="lineno">  883</span>&#160;            <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a134553e238f08cfa5e1dcf95d19a55a2">r_p32Targets</a>, nFamRect);</div><div class="line"><a name="l00884"></a><span class="lineno">  884</span>&#160;        }</div><div class="line"><a name="l00885"></a><span class="lineno">  885</span>&#160;    }</div><div class="line"><a name="l00886"></a><span class="lineno">  886</span>&#160;</div><div class="line"><a name="l00887"></a><span class="lineno">  887</span>&#160;</div><div class="line"><a name="l00888"></a><span class="lineno">  888</span>&#160;    <span class="comment">// Set stop condition variables</span></div><div class="line"><a name="l00889"></a><span class="lineno">  889</span>&#160;    <span class="keywordflow">if</span> (nFamRect &gt; 0 || nFamEll &gt; 0) {</div><div class="line"><a name="l00890"></a><span class="lineno">  890</span>&#160;</div><div class="line"><a name="l00891"></a><span class="lineno">  891</span>&#160;        <span class="keywordflow">if</span> (stopCondition == 0){ <span class="comment">// npoly option</span></div><div class="line"><a name="l00892"></a><span class="lineno">  892</span>&#160;            <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;nPoly:&quot;</span>);</div><div class="line"><a name="l00893"></a><span class="lineno">  893</span>&#160;            inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#af336784d384b9e2ab2d990f7855ecdcf">nPoly</a>;</div><div class="line"><a name="l00894"></a><span class="lineno">  894</span>&#160;        }</div><div class="line"><a name="l00895"></a><span class="lineno">  895</span>&#160;        <span class="keywordflow">else</span> <span class="keywordflow">if</span> (stopCondition == 1) { <span class="comment">// Stop program when p32 conditions per fracture family are met</span></div><div class="line"><a name="l00896"></a><span class="lineno">  896</span>&#160;            <a class="code" href="read_input_8cpp.html#a9d32f63bd011a629cf644c120e07eda8">p32Status</a> = <span class="keyword">new</span> <span class="keywordtype">bool</span> [nFamRect + <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>]; <span class="comment">// Staus array for whether or not the family has reached its p32 requirement </span></div><div class="line"><a name="l00897"></a><span class="lineno">  897</span>&#160;</div><div class="line"><a name="l00898"></a><span class="lineno">  898</span>&#160;            <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; (nFamRect + <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>); i++){</div><div class="line"><a name="l00899"></a><span class="lineno">  899</span>&#160;                <span class="comment">// Zero the status flags</span></div><div class="line"><a name="l00900"></a><span class="lineno">  900</span>&#160;                <a class="code" href="read_input_8cpp.html#a9d32f63bd011a629cf644c120e07eda8">p32Status</a>[i] = 0;</div><div class="line"><a name="l00901"></a><span class="lineno">  901</span>&#160;            }        </div><div class="line"><a name="l00902"></a><span class="lineno">  902</span>&#160;        }</div><div class="line"><a name="l00903"></a><span class="lineno">  903</span>&#160;    }</div><div class="line"><a name="l00904"></a><span class="lineno">  904</span>&#160;</div><div class="line"><a name="l00905"></a><span class="lineno">  905</span>&#160;         </div><div class="line"><a name="l00906"></a><span class="lineno">  906</span>&#160;        <span class="comment">// Counters, used to place variable into correct array index</span></div><div class="line"><a name="l00907"></a><span class="lineno">  907</span>&#160;        <span class="comment">// distribution counters</span></div><div class="line"><a name="l00908"></a><span class="lineno">  908</span>&#160;        shape1 = 0; <span class="comment">// Longnormal dist counter</span></div><div class="line"><a name="l00909"></a><span class="lineno">  909</span>&#160;        shape2 = 0; <span class="comment">// Truncated power-law dist counter</span></div><div class="line"><a name="l00910"></a><span class="lineno">  910</span>&#160;        shape3 = 0; <span class="comment">// Exponential dist counter</span></div><div class="line"><a name="l00911"></a><span class="lineno">  911</span>&#160;        shape4 = 0; <span class="comment">// Constant dist counter</span></div><div class="line"><a name="l00912"></a><span class="lineno">  912</span>&#160;        betaCount = 0;</div><div class="line"><a name="l00913"></a><span class="lineno">  913</span>&#160;    </div><div class="line"><a name="l00914"></a><span class="lineno">  914</span>&#160;</div><div class="line"><a name="l00915"></a><span class="lineno">  915</span>&#160;    <span class="comment">// Create shape strucutres from data gathered above</span></div><div class="line"><a name="l00916"></a><span class="lineno">  916</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; <a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>; i++) {</div><div class="line"><a name="l00917"></a><span class="lineno">  917</span>&#160;    </div><div class="line"><a name="l00918"></a><span class="lineno">  918</span>&#160;        <span class="keyword">struct </span><a class="code" href="struct_shape.html">Shape</a> newShapeFam;</div><div class="line"><a name="l00919"></a><span class="lineno">  919</span>&#160;       </div><div class="line"><a name="l00920"></a><span class="lineno">  920</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#a766d04a69991e931ba2176a927c747cb">shapeFamily</a> = 1; <span class="comment">// shapFam = 0 = ellipse, 1 = rect</span></div><div class="line"><a name="l00921"></a><span class="lineno">  921</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#a01b965e10318731a32fa68f0c87c9f20">distributionType</a> = <a class="code" href="read_input_8cpp.html#a2b56dc0d75fc7bdf8cc28a8d76bb5bb0">rdistr</a>[i];</div><div class="line"><a name="l00922"></a><span class="lineno">  922</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#a463c3c0ba9465daaac854eaeccdb3341">numPoints</a> = 4; <span class="comment">// Rectangle</span></div><div class="line"><a name="l00923"></a><span class="lineno">  923</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#a6126c3f7cd57df03350d4b58b844bba1">aspectRatio</a> = <a class="code" href="read_input_8cpp.html#ae109233b102d8437168226201f534f7f">raspect</a>[i];</div><div class="line"><a name="l00924"></a><span class="lineno">  924</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#a27f8a00841e3cc14fca05b44085d79f6">theta</a> = <a class="code" href="read_input_8cpp.html#af7799f743bff7994bf1c3f13c06768f7">rtheta</a>[i];</div><div class="line"><a name="l00925"></a><span class="lineno">  925</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#a858d838d438a5288e71902722119cb68">phi</a> = <a class="code" href="read_input_8cpp.html#a3e4ab90db603394c70bac5bb28d17642">rphi</a>[i];</div><div class="line"><a name="l00926"></a><span class="lineno">  926</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#abbf3338ea5ef5e026eed0423cc69dc7f">kappa</a> = <a class="code" href="read_input_8cpp.html#a06d46fed07577f154dc95f3429630eab">rkappa</a>[i];</div><div class="line"><a name="l00927"></a><span class="lineno">  927</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#aab81de1625d7e318b0c39a99186118ff">angleOption</a> = <a class="code" href="read_input_8cpp.html#a51b1c55910ea84f881a0e076b1d52d22">rAngleOption</a>;</div><div class="line"><a name="l00928"></a><span class="lineno">  928</span>&#160;        newShapeFam.<a class="code" href="struct_shape.html#a0ce256fc0e226ea6559786a2ae9d007f">layer</a> = <a class="code" href="read_input_8cpp.html#adc6d51fe3f946fa8ee9f36d20c291be7">rLayer</a>[i];</div><div class="line"><a name="l00929"></a><span class="lineno">  929</span>&#160;    </div><div class="line"><a name="l00930"></a><span class="lineno">  930</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="read_input_8cpp.html#a022634b7266251d1c40527f00cf745e2">rbetaDistribution</a>[i] == 1 ) { <span class="comment">// If constant beta option</span></div><div class="line"><a name="l00931"></a><span class="lineno">  931</span>&#160;            newShapeFam.<a class="code" href="struct_shape.html#a874e4756ad81f2e6f135e066bb0b4347">betaDistribution</a> = 1;</div><div class="line"><a name="l00932"></a><span class="lineno">  932</span>&#160;            newShapeFam.<a class="code" href="struct_shape.html#ab48639160dae4dfe2e3a0a55ffa5a691">beta</a> = <a class="code" href="read_input_8cpp.html#ab3b0fb1e4803a4ccb26d76feff92d66f">rbeta</a>[betaCount];</div><div class="line"><a name="l00933"></a><span class="lineno">  933</span>&#160;            betaCount++; </div><div class="line"><a name="l00934"></a><span class="lineno">  934</span>&#160;</div><div class="line"><a name="l00935"></a><span class="lineno">  935</span>&#160;        }</div><div class="line"><a name="l00936"></a><span class="lineno">  936</span>&#160;        <span class="keywordflow">else</span> {</div><div class="line"><a name="l00937"></a><span class="lineno">  937</span>&#160;            newShapeFam.<a class="code" href="struct_shape.html#a874e4756ad81f2e6f135e066bb0b4347">betaDistribution</a> = 0;</div><div class="line"><a name="l00938"></a><span class="lineno">  938</span>&#160;        }</div><div class="line"><a name="l00939"></a><span class="lineno">  939</span>&#160;        </div><div class="line"><a name="l00940"></a><span class="lineno">  940</span>&#160;        <span class="comment">// dist options:1 = lognormal, 2= truncated power-law, 3= exponential, 4=constant</span></div><div class="line"><a name="l00941"></a><span class="lineno">  941</span>&#160;        <span class="keywordflow">switch</span> (<a class="code" href="read_input_8cpp.html#a2b56dc0d75fc7bdf8cc28a8d76bb5bb0">rdistr</a>[i]) {</div><div class="line"><a name="l00942"></a><span class="lineno">  942</span>&#160;            <span class="keywordflow">case</span> 1: <span class="comment">// Lognormal</span></div><div class="line"><a name="l00943"></a><span class="lineno">  943</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#a0b4a5b43302221719982e9b5bbd9cbae">mean</a> = <a class="code" href="read_input_8cpp.html#a707ee63e148affd4919ba06f571f4900">rLogMean</a>[shape1];</div><div class="line"><a name="l00944"></a><span class="lineno">  944</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#ad3faf14baf1d50b97a8ae243721213af">sd</a> = <a class="code" href="read_input_8cpp.html#adf92ce38547577a99b68dfd3f07b7d5a">rsd</a>[shape1];</div><div class="line"><a name="l00945"></a><span class="lineno">  945</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#a3ce69d18bbb29c85a319ccbdb62d70f8">logMin</a> = <a class="code" href="read_input_8cpp.html#a7ff1f3d206d8aa29d1ef913a29a4d913">rLogMin</a>[shape1];</div><div class="line"><a name="l00946"></a><span class="lineno">  946</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#a58884d0543597d129cd6c118d2c2ad61">logMax</a> = <a class="code" href="read_input_8cpp.html#a74df85297c0276a08a9629c806c8cfb3">rLogMax</a>[shape1];</div><div class="line"><a name="l00947"></a><span class="lineno">  947</span>&#160;                shape1++;</div><div class="line"><a name="l00948"></a><span class="lineno">  948</span>&#160;                <span class="keywordflow">break</span>;</div><div class="line"><a name="l00949"></a><span class="lineno">  949</span>&#160;            <span class="keywordflow">case</span> 2: <span class="comment">// Truncated power-law</span></div><div class="line"><a name="l00950"></a><span class="lineno">  950</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#a59e4810d42b9b0cc47e6a50afea0741b">min</a> = <a class="code" href="read_input_8cpp.html#ae63e451c9aec7d1dd4927f49fd9ebe5b">rmin</a>[shape2];</div><div class="line"><a name="l00951"></a><span class="lineno">  951</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#ac674a8084da0711a93fb48d976467697">max</a> = <a class="code" href="read_input_8cpp.html#aec3e303441f7bdaf97d3e9dcfc6427cf">rmax</a>[shape2];</div><div class="line"><a name="l00952"></a><span class="lineno">  952</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#a66a52f9200f362ec1e754c5211e6ba6c">alpha</a> = <a class="code" href="read_input_8cpp.html#aa475379828be0fec5845fcf40a010e7e">ralpha</a>[shape2];</div><div class="line"><a name="l00953"></a><span class="lineno">  953</span>&#160;           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newShapeFam.<a class="code" href="struct_shape.html#a8ab95adcaf91af7ef364bdaeca382154">expMin</a> = <a class="code" href="read_input_8cpp.html#a117cb72d9e60a8d11bb8a187d91314e1">rExpMin</a>[shape3];</div><div class="line"><a name="l00959"></a><span class="lineno">  959</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#adcf523f838d1c624bd9d13931a342e29">expMax</a> = <a class="code" href="read_input_8cpp.html#a6eb19c17be97a0cb87c6edec074fe77c">rExpMax</a>[shape3];</div><div class="line"><a name="l00960"></a><span class="lineno">  960</span>&#160;                shape3++;</div><div class="line"><a name="l00961"></a><span class="lineno">  961</span>&#160;                <span class="keywordflow">break</span>;</div><div class="line"><a name="l00962"></a><span class="lineno">  962</span>&#160;            <span class="keywordflow">case</span> 4:</div><div class="line"><a name="l00963"></a><span class="lineno">  963</span>&#160;                newShapeFam.<a class="code" href="struct_shape.html#ae1d2c2e5ad0273aed7474f3c4f7b8b7c">constRadi</a> = <a class="code" href="read_input_8cpp.html#a2cc23f61f56f17d18da1c225a8e3ea9b">rconst</a>[shape4];</div><div class="line"><a name="l00964"></a><span class="lineno">  964</span>&#160;                shape4++;</div><div class="line"><a name="l00965"></a><span class="lineno">  965</span>&#160;                <span class="keywordflow">break</span>;</div><div class="line"><a name="l00966"></a><span class="lineno">  966</span>&#160;        }</div><div class="line"><a name="l00967"></a><span class="lineno">  967</span>&#160;        </div><div class="line"><a name="l00968"></a><span class="lineno">  968</span>&#160;        <span class="keywordflow">if</span> (stopCondition == 1){    </div><div class="line"><a name="l00969"></a><span class="lineno">  969</span>&#160;            newShapeFam.<a class="code" href="struct_shape.html#acb8154ed9d7be6b37a7b83f44efb0bfb">p32Target</a> = <a class="code" href="read_input_8cpp.html#a134553e238f08cfa5e1dcf95d19a55a2">r_p32Targets</a>[i];</div><div class="line"><a name="l00970"></a><span class="lineno">  970</span>&#160;        }    </div><div class="line"><a name="l00971"></a><span class="lineno">  971</span>&#160;        </div><div class="line"><a name="l00972"></a><span class="lineno">  972</span>&#160;        </div><div class="line"><a name="l00973"></a><span class="lineno">  973</span>&#160;        <span class="comment">// Save family to perminant array</span></div><div class="line"><a name="l00974"></a><span class="lineno">  974</span>&#160;        shapeFamily.push_back(newShapeFam);</div><div class="line"><a name="l00975"></a><span class="lineno">  975</span>&#160;</div><div class="line"><a name="l00976"></a><span class="lineno">  976</span>&#160;    }</div><div class="line"><a name="l00977"></a><span class="lineno">  977</span>&#160;</div><div class="line"><a name="l00978"></a><span class="lineno">  978</span>&#160;    <span class="keywordflow">if</span> (nFamRect &gt; 0 ) {</div><div class="line"><a name="l00979"></a><span class="lineno">  979</span>&#160;        <span class="comment">// Can now delete/free the memory for these arrays</span></div><div class="line"><a name="l00980"></a><span class="lineno">  980</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a022634b7266251d1c40527f00cf745e2">rbetaDistribution</a>;</div><div class="line"><a name="l00981"></a><span class="lineno">  981</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a2b56dc0d75fc7bdf8cc28a8d76bb5bb0">rdistr</a>;</div><div class="line"><a name="l00982"></a><span class="lineno">  982</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#ae109233b102d8437168226201f534f7f">raspect</a>;</div><div class="line"><a name="l00983"></a><span class="lineno">  983</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#af7799f743bff7994bf1c3f13c06768f7">rtheta</a>;</div><div class="line"><a name="l00984"></a><span class="lineno">  984</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a3e4ab90db603394c70bac5bb28d17642">rphi</a>;</div><div class="line"><a name="l00985"></a><span class="lineno">  985</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#ab3b0fb1e4803a4ccb26d76feff92d66f">rbeta</a>;</div><div class="line"><a name="l00986"></a><span class="lineno">  986</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a06d46fed07577f154dc95f3429630eab">rkappa</a>;</div><div class="line"><a name="l00987"></a><span class="lineno">  987</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a707ee63e148affd4919ba06f571f4900">rLogMean</a>;</div><div class="line"><a name="l00988"></a><span class="lineno">  988</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#adf92ce38547577a99b68dfd3f07b7d5a">rsd</a>;</div><div class="line"><a name="l00989"></a><span class="lineno">  989</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a5e07ea712b5e43f8bca080f93ad86e3f">rExpMean</a>;</div><div class="line"><a name="l00990"></a><span class="lineno">  990</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#ae63e451c9aec7d1dd4927f49fd9ebe5b">rmin</a>;</div><div class="line"><a name="l00991"></a><span class="lineno">  991</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#aec3e303441f7bdaf97d3e9dcfc6427cf">rmax</a>;</div><div class="line"><a name="l00992"></a><span class="lineno">  992</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#aa475379828be0fec5845fcf40a010e7e">ralpha</a>;</div><div class="line"><a name="l00993"></a><span class="lineno">  993</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a2cc23f61f56f17d18da1c225a8e3ea9b">rconst</a>;</div><div class="line"><a name="l00994"></a><span class="lineno">  994</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#adc6d51fe3f946fa8ee9f36d20c291be7">rLayer</a>;</div><div class="line"><a name="l00995"></a><span class="lineno">  995</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a7ff1f3d206d8aa29d1ef913a29a4d913">rLogMin</a>;</div><div class="line"><a name="l00996"></a><span class="lineno">  996</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a74df85297c0276a08a9629c806c8cfb3">rLogMax</a>;</div><div class="line"><a name="l00997"></a><span class="lineno">  997</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a117cb72d9e60a8d11bb8a187d91314e1">rExpMin</a>;</div><div class="line"><a name="l00998"></a><span class="lineno">  998</span>&#160;        <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a6eb19c17be97a0cb87c6edec074fe77c">rExpMax</a>;</div><div class="line"><a name="l00999"></a><span class="lineno">  999</span>&#160;        </div><div class="line"><a name="l01000"></a><span class="lineno"> 1000</span>&#160;        <span class="keywordflow">if</span> (stopCondition == 1) { </div><div class="line"><a name="l01001"></a><span class="lineno"> 1001</span>&#160;            <span class="keyword">delete</span>[] <a class="code" href="read_input_8cpp.html#a134553e238f08cfa5e1dcf95d19a55a2">r_p32Targets</a>;</div><div class="line"><a name="l01002"></a><span class="lineno"> 1002</span>&#160;        }</div><div class="line"><a name="l01003"></a><span class="lineno"> 1003</span>&#160;    }</div><div class="line"><a name="l01004"></a><span class="lineno"> 1004</span>&#160;</div><div class="line"><a name="l01005"></a><span class="lineno"> 1005</span>&#160;</div><div class="line"><a name="l01006"></a><span class="lineno"> 1006</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;userEllipsesOnOff:&quot;</span>);</div><div class="line"><a name="l01007"></a><span class="lineno"> 1007</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#af93cb3f9ec0bb2490e0c2219b15aa1cf">userEllipsesOnOff</a>;</div><div class="line"><a name="l01008"></a><span class="lineno"> 1008</span>&#160;</div><div class="line"><a name="l01009"></a><span class="lineno"> 1009</span>&#160;    <span class="keywordflow">if</span> (userEllipsesOnOff != 0) {</div><div class="line"><a name="l01010"></a><span class="lineno"> 1010</span>&#160;</div><div class="line"><a name="l01011"></a><span class="lineno"> 1011</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;UserEll_Input_File_Path:&quot;</span>);</div><div class="line"><a name="l01012"></a><span class="lineno"> 1012</span>&#160;        inputFile &gt;&gt; tempstring;</div><div class="line"><a name="l01013"></a><span class="lineno"> 1013</span>&#160;        std::ifstream uEllFile;</div><div class="line"><a name="l01014"></a><span class="lineno"> 1014</span>&#160;        uEllFile.open(tempstring.c_str(),std::ifstream::in);</div><div class="line"><a name="l01015"></a><span class="lineno"> 1015</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(uEllFile, tempstring);</div><div class="line"><a name="l01016"></a><span class="lineno"> 1016</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;User Defined Ellipses File: &quot;</span> &lt;&lt; tempstring &lt;&lt; std::endl;</div><div class="line"><a name="l01017"></a><span class="lineno"> 1017</span>&#160;</div><div class="line"><a name="l01018"></a><span class="lineno"> 1018</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(uEllFile, <span class="stringliteral">&quot;nUserEll:&quot;</span>);</div><div class="line"><a name="l01019"></a><span class="lineno"> 1019</span>&#160;        uEllFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a34b022fe45fc2867613a3c1c34b438f6">nUserEll</a>;</div><div class="line"><a name="l01020"></a><span class="lineno"> 1020</span>&#160;</div><div class="line"><a name="l01021"></a><span class="lineno"> 1021</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(uEllFile, <span class="stringliteral">&quot;Radii:&quot;</span>);</div><div class="line"><a name="l01022"></a><span class="lineno"> 1022</span>&#160;        <a class="code" href="read_input_8cpp.html#ae024abd4b5b586cb7e1014b7827389ce">ueRadii</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#a34b022fe45fc2867613a3c1c34b438f6">nUserEll</a>];</div><div class="line"><a name="l01023"></a><span class="lineno"> 1023</span>&#160;        <a class="code" href="read_input_functions_8h.html#af3ca30978155c408a22accb089cfb2f6">getElements</a>(uEllFile, <a class="code" href="read_input_8cpp.html#ae024abd4b5b586cb7e1014b7827389ce">ueRadii</a>, nUserEll);</div><div class="line"><a name="l01024"></a><span class="lineno"> 1024</span>&#160;</div><div class="line"><a name="l01025"></a><span class="lineno"> 1025</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(uEllFile, <span class="stringliteral">&quot;Aspect_Ratio:&quot;</span>);</div><div class="line"><a name="l01026"></a><span class="lineno"> 1026</span>&#160;        <a class="code" href="read_input_8cpp.html#aaaf0e486c67fa85237a618bd98de392f">ueaspect</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#a34b022fe45fc2867613a3c1c34b438f6">nUserEll</a>];</div><div class="line"><a name="l01027"></a><span class="lineno"> 1027</span>&#160;        <a class="code" href="read_input_functions_8h.html#af3ca30978155c408a22accb089cfb2f6">getElements</a>(uEllFile, <a class="code" href="read_input_8cpp.html#aaaf0e486c67fa85237a618bd98de392f">ueaspect</a>, nUserEll);</div><div class="line"><a name="l01028"></a><span class="lineno"> 1028</span>&#160;</div><div class="line"><a name="l01029"></a><span class="lineno"> 1029</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(uEllFile, <span class="stringliteral">&quot;AngleOption:&quot;</span>);</div><div class="line"><a name="l01030"></a><span class="lineno"> 1030</span>&#160;        uEllFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a333da043e2fa974490caf58dbd0d41b5">ueAngleOption</a>;</div><div class="line"><a name="l01031"></a><span class="lineno"> 1031</span>&#160;</div><div class="line"><a name="l01032"></a><span class="lineno"> 1032</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(uEllFile, <span class="stringliteral">&quot;Beta:&quot;</span>);</div><div class="line"><a name="l01033"></a><span class="lineno"> 1033</span>&#160;        <a class="code" href="read_input_8cpp.html#aa70c40ba01fa4b50e7a074f385623e8d">ueBeta</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#a34b022fe45fc2867613a3c1c34b438f6">nUserEll</a>];</div><div class="line"><a name="l01034"></a><span class="lineno"> 1034</span>&#160;        <a class="code" href="read_input_functions_8h.html#af3ca30978155c408a22accb089cfb2f6">getElements</a>(uEllFile, <a class="code" href="read_input_8cpp.html#aa70c40ba01fa4b50e7a074f385623e8d">ueBeta</a>, nUserEll);</div><div class="line"><a name="l01035"></a><span class="lineno"> 1035</span>&#160;</div><div class="line"><a name="l01036"></a><span class="lineno"> 1036</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(uEllFile, <span class="stringliteral">&quot;Translation:&quot;</span>);</div><div class="line"><a name="l01037"></a><span class="lineno"> 1037</span>&#160;        <a class="code" href="read_input_8cpp.html#a2a503587fec7b29eb9ea86e888825740">uetranslation</a> = <span class="keyword">new</span> <span class="keywordtype">double</span>[3*<a class="code" href="read_input_8cpp.html#a34b022fe45fc2867613a3c1c34b438f6">nUserEll</a>];</div><div class="line"><a name="l01038"></a><span class="lineno"> 1038</span>&#160;        <a class="code" href="read_input_functions_8h.html#adb0e78d29aea2d97dcae112fa8c1b302">get2dAry</a>(uEllFile, <a class="code" href="read_input_8cpp.html#a2a503587fec7b29eb9ea86e888825740">uetranslation</a>, nUserEll);</div><div class="line"><a name="l01039"></a><span class="lineno"> 1039</span>&#160;</div><div class="line"><a name="l01040"></a><span class="lineno"> 1040</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(uEllFile, <span class="stringliteral">&quot;Normal:&quot;</span>);</div><div class="line"><a name="l01041"></a><span class="lineno"> 1041</span>&#160;        <a class="code" href="read_input_8cpp.html#a21ed4fa7b41dca019fee053fb657cb4c">uenormal</a> = <span class="keyword">new</span> <span class="keywordtype">double</span>[3*<a class="code" href="read_input_8cpp.html#a34b022fe45fc2867613a3c1c34b438f6">nUserEll</a>];</div><div class="line"><a name="l01042"></a><span class="lineno"> 1042</span>&#160;        <a class="code" href="read_input_functions_8h.html#adb0e78d29aea2d97dcae112fa8c1b302">get2dAry</a>(uEllFile, <a class="code" href="read_input_8cpp.html#a21ed4fa7b41dca019fee053fb657cb4c">uenormal</a>, nUserEll);</div><div class="line"><a name="l01043"></a><span class="lineno"> 1043</span>&#160;</div><div class="line"><a name="l01044"></a><span class="lineno"> 1044</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(uEllFile, <span class="stringliteral">&quot;Number_of_Vertices:&quot;</span>);</div><div class="line"><a name="l01045"></a><span class="lineno"> 1045</span>&#160;        <a class="code" href="read_input_8cpp.html#a82545e822af83745e013a7b0af397758">uenumPoints</a> = <span class="keyword">new</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span>[<a class="code" href="read_input_8cpp.html#a34b022fe45fc2867613a3c1c34b438f6">nUserEll</a>];</div><div class="line"><a name="l01046"></a><span class="lineno"> 1046</span>&#160;        <a class="code" href="read_input_functions_8h.html#af3ca30978155c408a22accb089cfb2f6">getElements</a>(uEllFile, <a class="code" href="read_input_8cpp.html#a82545e822af83745e013a7b0af397758">uenumPoints</a>, nUserEll);</div><div class="line"><a name="l01047"></a><span class="lineno"> 1047</span>&#160;</div><div class="line"><a name="l01048"></a><span class="lineno"> 1048</span>&#160;        uEllFile.close();</div><div class="line"><a name="l01049"></a><span class="lineno"> 1049</span>&#160;    }</div><div class="line"><a name="l01050"></a><span class="lineno"> 1050</span>&#160;</div><div class="line"><a name="l01051"></a><span class="lineno"> 1051</span>&#160;</div><div class="line"><a name="l01052"></a><span class="lineno"> 1052</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;userRectanglesOnOff:&quot;</span>);</div><div class="line"><a name="l01053"></a><span class="lineno"> 1053</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#ab963e6ee0512d7651d002947e0bfd1df">userRectanglesOnOff</a>;</div><div class="line"><a name="l01054"></a><span class="lineno"> 1054</span>&#160;</div><div class="line"><a name="l01055"></a><span class="lineno"> 1055</span>&#160;</div><div class="line"><a name="l01056"></a><span class="lineno"> 1056</span>&#160;    <span class="keywordflow">if</span> (userRectanglesOnOff != 0) {</div><div class="line"><a name="l01057"></a><span class="lineno"> 1057</span>&#160;</div><div class="line"><a name="l01058"></a><span 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1064</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;User Defined Rectangles File: &quot;</span> &lt;&lt; tempstring &lt;&lt; std::endl;</div><div class="line"><a name="l01065"></a><span class="lineno"> 1065</span>&#160;</div><div class="line"><a name="l01066"></a><span class="lineno"> 1066</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(uRectFile,<span class="stringliteral">&quot;nUserRect:&quot;</span>);</div><div class="line"><a name="l01067"></a><span class="lineno"> 1067</span>&#160;        uRectFile &gt;&gt; <a class="code" href="read_input_8cpp.html#af1cc6f1970facb5cc2a3c8213ca0831b">nUserRect</a>;</div><div class="line"><a name="l01068"></a><span class="lineno"> 1068</span>&#160;</div><div class="line"><a name="l01069"></a><span class="lineno"> 1069</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(uRectFile, <span class="stringliteral">&quot;Radii:&quot;</span>);</div><div class="line"><a name="l01070"></a><span class="lineno"> 1070</span>&#160;        <a class="code" href="read_input_8cpp.html#aa405ad70b9b0ac6ecd99d129b6bd70c5">urRadii</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#af1cc6f1970facb5cc2a3c8213ca0831b">nUserRect</a>];</div><div class="line"><a name="l01071"></a><span class="lineno"> 1071</span>&#160;        <a class="code" href="read_input_functions_8h.html#af3ca30978155c408a22accb089cfb2f6">getElements</a>(uRectFile, <a class="code" href="read_input_8cpp.html#aa405ad70b9b0ac6ecd99d129b6bd70c5">urRadii</a>, nUserRect);</div><div class="line"><a name="l01072"></a><span class="lineno"> 1072</span>&#160;</div><div class="line"><a name="l01073"></a><span class="lineno"> 1073</span>&#160;</div><div class="line"><a name="l01074"></a><span class="lineno"> 1074</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(uRectFile, <span class="stringliteral">&quot;AngleOption:&quot;</span>);</div><div class="line"><a name="l01075"></a><span class="lineno"> 1075</span>&#160;        uRectFile &gt;&gt; <a class="code" href="read_input_8cpp.html#ac96aa63bd3ea1ada8be7e9e01768f2b9">urAngleOption</a>;</div><div class="line"><a name="l01076"></a><span class="lineno"> 1076</span>&#160;</div><div class="line"><a name="l01077"></a><span class="lineno"> 1077</span>&#160;</div><div class="line"><a name="l01078"></a><span class="lineno"> 1078</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(uRectFile, <span class="stringliteral">&quot;Beta:&quot;</span>);</div><div class="line"><a name="l01079"></a><span class="lineno"> 1079</span>&#160;        <a class="code" href="read_input_8cpp.html#a3a221080d3c2e62421c789738a9e57bc">urBeta</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#af1cc6f1970facb5cc2a3c8213ca0831b">nUserRect</a>];</div><div class="line"><a name="l01080"></a><span class="lineno"> 1080</span>&#160;        <a class="code" href="read_input_functions_8h.html#af3ca30978155c408a22accb089cfb2f6">getElements</a>(uRectFile, <a class="code" href="read_input_8cpp.html#a3a221080d3c2e62421c789738a9e57bc">urBeta</a>, nUserRect);</div><div class="line"><a name="l01081"></a><span class="lineno"> 1081</span>&#160;</div><div class="line"><a name="l01082"></a><span class="lineno"> 1082</span>&#160;</div><div class="line"><a name="l01083"></a><span class="lineno"> 1083</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(uRectFile, <span class="stringliteral">&quot;Aspect_Ratio:&quot;</span>);</div><div class="line"><a name="l01084"></a><span class="lineno"> 1084</span>&#160;        <a class="code" href="read_input_8cpp.html#a6525be673f373b6358953ce4f7dc0e51">uraspect</a> = <span class="keyword">new</span> <span class="keywordtype">float</span>[<a class="code" href="read_input_8cpp.html#af1cc6f1970facb5cc2a3c8213ca0831b">nUserRect</a>];</div><div class="line"><a name="l01085"></a><span class="lineno"> 1085</span>&#160;        <a class="code" href="read_input_functions_8h.html#af3ca30978155c408a22accb089cfb2f6">getElements</a>(uRectFile, <a class="code" href="read_input_8cpp.html#a6525be673f373b6358953ce4f7dc0e51">uraspect</a>, nUserRect);</div><div class="line"><a name="l01086"></a><span class="lineno"> 1086</span>&#160;</div><div class="line"><a name="l01087"></a><span class="lineno"> 1087</span>&#160;</div><div class="line"><a name="l01088"></a><span class="lineno"> 1088</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(uRectFile, <span class="stringliteral">&quot;Translation:&quot;</span>);</div><div class="line"><a name="l01089"></a><span class="lineno"> 1089</span>&#160;        <a class="code" href="read_input_8cpp.html#afe5f83bbc1b394f1fbeccb94b2b682fc">urtranslation</a> = <span class="keyword">new</span> <span class="keywordtype">double</span>[3*<a class="code" href="read_input_8cpp.html#af1cc6f1970facb5cc2a3c8213ca0831b">nUserRect</a>];</div><div class="line"><a name="l01090"></a><span class="lineno"> 1090</span>&#160;        <a class="code" href="read_input_functions_8h.html#adb0e78d29aea2d97dcae112fa8c1b302">get2dAry</a>(uRectFile, <a class="code" href="read_input_8cpp.html#afe5f83bbc1b394f1fbeccb94b2b682fc">urtranslation</a>, nUserRect);</div><div class="line"><a name="l01091"></a><span class="lineno"> 1091</span>&#160;        </div><div class="line"><a name="l01092"></a><span class="lineno"> 1092</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(uRectFile, <span class="stringliteral">&quot;Normal:&quot;</span>);</div><div class="line"><a name="l01093"></a><span class="lineno"> 1093</span>&#160;        <a class="code" href="read_input_8cpp.html#a3f2127d5667258fc93d264436ab8abd5">urnormal</a> = <span class="keyword">new</span> <span class="keywordtype">double</span>[3*<a class="code" href="read_input_8cpp.html#af1cc6f1970facb5cc2a3c8213ca0831b">nUserRect</a>];</div><div class="line"><a name="l01094"></a><span class="lineno"> 1094</span>&#160;        <a class="code" href="read_input_functions_8h.html#adb0e78d29aea2d97dcae112fa8c1b302">get2dAry</a>(uRectFile, <a class="code" href="read_input_8cpp.html#a3f2127d5667258fc93d264436ab8abd5">urnormal</a>, nUserRect);</div><div class="line"><a name="l01095"></a><span class="lineno"> 1095</span>&#160;</div><div class="line"><a name="l01096"></a><span class="lineno"> 1096</span>&#160;</div><div class="line"><a name="l01097"></a><span class="lineno"> 1097</span>&#160;</div><div class="line"><a name="l01098"></a><span class="lineno"> 1098</span>&#160;        uRectFile.close();</div><div class="line"><a name="l01099"></a><span class="lineno"> 1099</span>&#160;    }</div><div class="line"><a name="l01100"></a><span class="lineno"> 1100</span>&#160;    </div><div class="line"><a name="l01101"></a><span class="lineno"> 1101</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;userEllByCoord:&quot;</span>);</div><div class="line"><a name="l01102"></a><span class="lineno"> 1102</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a3718da9decab4e36a1011af51ab11bd7">userEllByCoord</a>;</div><div class="line"><a name="l01103"></a><span class="lineno"> 1103</span>&#160;</div><div class="line"><a name="l01104"></a><span class="lineno"> 1104</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;userRecByCoord:&quot;</span>);</div><div class="line"><a name="l01105"></a><span class="lineno"> 1105</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a7ece519c4cc6ecd5512562594084e8aa">userRecByCoord</a>;</div><div class="line"><a name="l01106"></a><span class="lineno"> 1106</span>&#160;</div><div class="line"><a name="l01107"></a><span class="lineno"> 1107</span>&#160;</div><div class="line"><a name="l01108"></a><span class="lineno"> 1108</span>&#160;</div><div class="line"><a name="l01109"></a><span class="lineno"> 1109</span>&#160;    <span class="keywordflow">if</span> ((userRectanglesOnOff == 1 || userRecByCoord == 1) &amp;&amp; (userEllipsesOnOff == 1 || userEllByCoord == 1)) {</div><div class="line"><a name="l01110"></a><span class="lineno"> 1110</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;insertUserRectanglesFirst:&quot;</span>);</div><div class="line"><a name="l01111"></a><span class="lineno"> 1111</span>&#160;        inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a92d138143c536b0bc8ca70ddc1479677">insertUserRectanglesFirst</a>;</div><div class="line"><a name="l01112"></a><span class="lineno"> 1112</span>&#160;    }</div><div class="line"><a name="l01113"></a><span class="lineno"> 1113</span>&#160;    <span class="keywordflow">else</span> {</div><div class="line"><a name="l01114"></a><span class="lineno"> 1114</span>&#160;        <a class="code" href="read_input_8cpp.html#a92d138143c536b0bc8ca70ddc1479677">insertUserRectanglesFirst</a> = 0;</div><div class="line"><a name="l01115"></a><span class="lineno"> 1115</span>&#160;    }</div><div class="line"><a name="l01116"></a><span class="lineno"> 1116</span>&#160;</div><div class="line"><a name="l01117"></a><span class="lineno"> 1117</span>&#160;</div><div class="line"><a name="l01118"></a><span class="lineno"> 1118</span>&#160;</div><div class="line"><a name="l01119"></a><span class="lineno"> 1119</span>&#160;    <span class="keywordflow">if</span> (userEllByCoord != 0) { </div><div class="line"><a name="l01120"></a><span class="lineno"> 1120</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;EllByCoord_Input_File_Path:&quot;</span>);</div><div class="line"><a name="l01121"></a><span class="lineno"> 1121</span>&#160;        inputFile &gt;&gt; tempstring;</div><div class="line"><a name="l01122"></a><span class="lineno"> 1122</span>&#160;        std::ifstream file;</div><div class="line"><a name="l01123"></a><span class="lineno"> 1123</span>&#160;        file.open(tempstring.c_str(),std::ifstream::in);</div><div class="line"><a name="l01124"></a><span class="lineno"> 1124</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(file, tempstring);</div><div class="line"><a name="l01125"></a><span class="lineno"> 1125</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;User Defined Ellipses by Coordinates File: &quot;</span> &lt;&lt; tempstring &lt;&lt; std::endl;</div><div class="line"><a name="l01126"></a><span class="lineno"> 1126</span>&#160;        </div><div class="line"><a name="l01127"></a><span class="lineno"> 1127</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(file, <span class="stringliteral">&quot;nEllipses:&quot;</span>);</div><div class="line"><a name="l01128"></a><span class="lineno"> 1128</span>&#160;        file &gt;&gt; <a class="code" href="read_input_8cpp.html#ada3b91179b46162c80386d76958f8dd3">nEllByCoord</a>;</div><div class="line"><a name="l01129"></a><span class="lineno"> 1129</span>&#160;</div><div class="line"><a name="l01130"></a><span class="lineno"> 1130</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(file, <span class="stringliteral">&quot;nNodes:&quot;</span>);</div><div class="line"><a name="l01131"></a><span class="lineno"> 1131</span>&#160;        file &gt;&gt; <a class="code" href="read_input_8cpp.html#af5c3c3acc9bc409f6a0e8c5f9feb5357">nEllNodes</a>;</div><div class="line"><a name="l01132"></a><span class="lineno"> 1132</span>&#160;</div><div class="line"><a name="l01133"></a><span class="lineno"> 1133</span>&#160;        <a class="code" href="read_input_8cpp.html#acbc0fff3720dd713fe1b3eb4742f2c86">userEllCoordVertices</a> = <span class="keyword">new</span> <span class="keywordtype">double</span>[3 * nEllNodes * <a class="code" href="read_input_8cpp.html#ada3b91179b46162c80386d76958f8dd3">nEllByCoord</a>];</div><div class="line"><a name="l01134"></a><span class="lineno"> 1134</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(file, <span class="stringliteral">&quot;Coordinates:&quot;</span>);</div><div class="line"><a name="l01135"></a><span class="lineno"> 1135</span>&#160;</div><div class="line"><a name="l01136"></a><span class="lineno"> 1136</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#ace2678acc2713901e5e84f0b88d27029">getCords</a>(file, <a class="code" href="read_input_8cpp.html#acbc0fff3720dd713fe1b3eb4742f2c86">userEllCoordVertices</a>, nEllByCoord, nEllNodes);</div><div class="line"><a name="l01137"></a><span class="lineno"> 1137</span>&#160;        </div><div class="line"><a name="l01138"></a><span class="lineno"> 1138</span>&#160;        file.close();   </div><div class="line"><a name="l01139"></a><span class="lineno"> 1139</span>&#160;    }</div><div class="line"><a name="l01140"></a><span class="lineno"> 1140</span>&#160;</div><div class="line"><a name="l01141"></a><span class="lineno"> 1141</span>&#160;</div><div class="line"><a name="l01142"></a><span class="lineno"> 1142</span>&#160;    <span class="keywordflow">if</span> (userRecByCoord != 0) {</div><div class="line"><a name="l01143"></a><span class="lineno"> 1143</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;RectByCood_Input_File_Path:&quot;</span>);</div><div class="line"><a name="l01144"></a><span class="lineno"> 1144</span>&#160;        inputFile &gt;&gt; tempstring;</div><div class="line"><a name="l01145"></a><span class="lineno"> 1145</span>&#160;        std::ifstream uCoordFile;</div><div class="line"><a name="l01146"></a><span class="lineno"> 1146</span>&#160;        uCoordFile.open(tempstring.c_str(),std::ifstream::in);</div><div class="line"><a name="l01147"></a><span class="lineno"> 1147</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(uCoordFile, tempstring);</div><div class="line"><a name="l01148"></a><span class="lineno"> 1148</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;User Defined Rectangles by Coordinates File: &quot;</span> &lt;&lt; tempstring &lt;&lt; std::endl;</div><div class="line"><a name="l01149"></a><span class="lineno"> 1149</span>&#160;</div><div class="line"><a name="l01150"></a><span class="lineno"> 1150</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(uCoordFile, <span class="stringliteral">&quot;nRectangles:&quot;</span>);</div><div class="line"><a name="l01151"></a><span class="lineno"> 1151</span>&#160;        uCoordFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a1bf3ca80fe0d1f2fa3679ce8a674134a">nRectByCoord</a>;</div><div class="line"><a name="l01152"></a><span class="lineno"> 1152</span>&#160;</div><div class="line"><a name="l01153"></a><span class="lineno"> 1153</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(uCoordFile, <span class="stringliteral">&quot;Coordinates:&quot;</span>);</div><div class="line"><a name="l01154"></a><span class="lineno"> 1154</span>&#160;        <span class="comment">//4 vertices, 12 elements x,y,z per rectangle: </span></div><div class="line"><a name="l01155"></a><span class="lineno"> 1155</span>&#160;        <a class="code" href="read_input_8cpp.html#a2c808101a3d77245f00bb544238e75b2">userRectCoordVertices</a> = <span class="keyword">new</span> <span class="keywordtype">double</span>[12 * <a class="code" href="read_input_8cpp.html#a1bf3ca80fe0d1f2fa3679ce8a674134a">nRectByCoord</a>];</div><div class="line"><a name="l01156"></a><span class="lineno"> 1156</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a24ac2ea59c066cbc9c9c5334dec3bc49">getRectCoords</a>(uCoordFile, <a class="code" href="read_input_8cpp.html#a2c808101a3d77245f00bb544238e75b2">userRectCoordVertices</a>, nRectByCoord);</div><div class="line"><a name="l01157"></a><span class="lineno"> 1157</span>&#160;</div><div class="line"><a name="l01158"></a><span class="lineno"> 1158</span>&#160;        uCoordFile.close();</div><div class="line"><a name="l01159"></a><span class="lineno"> 1159</span>&#160;    } </div><div class="line"><a name="l01160"></a><span class="lineno"> 1160</span>&#160;</div><div class="line"><a name="l01161"></a><span class="lineno"> 1161</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;aperture:&quot;</span>);</div><div class="line"><a name="l01162"></a><span class="lineno"> 1162</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#abc39a0cf64740d1080e5c9867191fa0e">aperture</a>;</div><div class="line"><a name="l01163"></a><span class="lineno"> 1163</span>&#160;</div><div class="line"><a name="l01164"></a><span class="lineno"> 1164</span>&#160;    <span class="keywordflow">if</span> (aperture == 1) {</div><div class="line"><a name="l01165"></a><span class="lineno"> 1165</span>&#160;    </div><div class="line"><a name="l01166"></a><span class="lineno"> 1166</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;meanAperture:&quot;</span>);</div><div class="line"><a name="l01167"></a><span class="lineno"> 1167</span>&#160;        inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a8ca71d341876667108c011c790ed33de">meanAperture</a>;</div><div class="line"><a name="l01168"></a><span class="lineno"> 1168</span>&#160;</div><div class="line"><a name="l01169"></a><span class="lineno"> 1169</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;stdAperture:&quot;</span>);</div><div class="line"><a name="l01170"></a><span class="lineno"> 1170</span>&#160;        inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a0b60c5d860054f964ec05348b186e86e">stdAperture</a>;</div><div class="line"><a name="l01171"></a><span class="lineno"> 1171</span>&#160;</div><div class="line"><a name="l01172"></a><span class="lineno"> 1172</span>&#160;    }</div><div class="line"><a name="l01173"></a><span class="lineno"> 1173</span>&#160;    <span class="keywordflow">else</span> <span class="keywordflow">if</span> (aperture == 2) {</div><div class="line"><a name="l01174"></a><span class="lineno"> 1174</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile,<span class="stringliteral">&quot;apertureFromTransmissivity:&quot;</span>);</div><div class="line"><a name="l01175"></a><span class="lineno"> 1175</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#aafcf8c3d5090c1cda444c5a79854b434">apertureFromTransmissivity</a>, 2);</div><div class="line"><a name="l01176"></a><span class="lineno"> 1176</span>&#160;    }</div><div class="line"><a name="l01177"></a><span class="lineno"> 1177</span>&#160;    <span class="keywordflow">else</span> <span class="keywordflow">if</span> (aperture == 3) {</div><div class="line"><a name="l01178"></a><span class="lineno"> 1178</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;constantAperture:&quot;</span>);</div><div class="line"><a name="l01179"></a><span class="lineno"> 1179</span>&#160;        inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a48936b0f8f54a1cd2c7e83ca2392ec0a">constantAperture</a>;</div><div class="line"><a name="l01180"></a><span class="lineno"> 1180</span>&#160;    }  </div><div class="line"><a name="l01181"></a><span class="lineno"> 1181</span>&#160;    <span class="keywordflow">else</span> <span class="keywordflow">if</span> (aperture == 4) {</div><div class="line"><a name="l01182"></a><span class="lineno"> 1182</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;lengthCorrelatedAperture:&quot;</span>);</div><div class="line"><a name="l01183"></a><span class="lineno"> 1183</span>&#160;        <a class="code" href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a>(inputFile, <a class="code" href="read_input_8cpp.html#a96e535ecb2fde247beaba684f23b1c3c">lengthCorrelatedAperture</a>, 2);</div><div class="line"><a name="l01184"></a><span class="lineno"> 1184</span>&#160;    }</div><div class="line"><a name="l01185"></a><span class="lineno"> 1185</span>&#160;    <span class="keywordflow">else</span> {</div><div class="line"><a name="l01186"></a><span class="lineno"> 1186</span>&#160;        std::cerr&lt;&lt;<span class="stringliteral">&quot;\nERROR: Aperture option not recognised\n&quot;</span>;</div><div class="line"><a name="l01187"></a><span class="lineno"> 1187</span>&#160;        exit(1);</div><div class="line"><a name="l01188"></a><span class="lineno"> 1188</span>&#160;    }</div><div class="line"><a name="l01189"></a><span class="lineno"> 1189</span>&#160;</div><div class="line"><a name="l01190"></a><span class="lineno"> 1190</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;permOption:&quot;</span>);</div><div class="line"><a name="l01191"></a><span class="lineno"> 1191</span>&#160;    inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a6fda5f9c90f07130c1b0001301c6c945">permOption</a>;</div><div class="line"><a name="l01192"></a><span class="lineno"> 1192</span>&#160;    <span class="keywordflow">if</span> (permOption != 0) {</div><div class="line"><a name="l01193"></a><span class="lineno"> 1193</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a>(inputFile, <span class="stringliteral">&quot;constantPermeability:&quot;</span>);</div><div class="line"><a name="l01194"></a><span class="lineno"> 1194</span>&#160;        inputFile &gt;&gt; <a class="code" href="read_input_8cpp.html#a903896dcf39ee23cbea885abd3bc926d">constantPermeability</a>;</div><div class="line"><a name="l01195"></a><span class="lineno"> 1195</span>&#160;    }</div><div class="line"><a name="l01196"></a><span class="lineno"> 1196</span>&#160;</div><div class="line"><a name="l01197"></a><span class="lineno"> 1197</span>&#160;        <span class="comment">// Error check on stopping parameter</span></div><div class="line"><a name="l01198"></a><span class="lineno"> 1198</span>&#160;    <span class="keywordflow">if</span> (nFamEll + nFamRect == 0 &amp;&amp; stopCondition != 0) { <span class="comment">// If no stochastic shapes, use nPoly option with npoly = number of user polygons</span></div><div class="line"><a name="l01199"></a><span class="lineno"> 1199</span>&#160;        std::cout&lt;&lt;<span class="stringliteral">&quot;\nWARNING: You have defined stopCondition = 1 (P32 program stopping condition) but have no stochastic shape families defined. Automatically setting stopCondition to 0 for use with user defined polygons and nPoly.\n\n&quot;</span>;</div><div class="line"><a name="l01200"></a><span class="lineno"> 1200</span>&#160;        stopCondition = 0;</div><div class="line"><a name="l01201"></a><span class="lineno"> 1201</span>&#160;        </div><div class="line"><a name="l01202"></a><span class="lineno"> 1202</span>&#160;        <span class="keywordflow">if</span> (userEllipsesOnOff == 0 &amp;&amp; userRectanglesOnOff == 0 &amp;&amp; userRecByCoord == 0 ) {</div><div class="line"><a name="l01203"></a><span class="lineno"> 1203</span>&#160;            std::cout &lt;&lt; <span class="stringliteral">&quot;ERROR: All polygon generating options are off or undefined, please check input file for errors.\n\n&quot;</span>;</div><div class="line"><a name="l01204"></a><span class="lineno"> 1204</span>&#160;            exit(1);</div><div class="line"><a name="l01205"></a><span class="lineno"> 1205</span>&#160;        }</div><div class="line"><a name="l01206"></a><span class="lineno"> 1206</span>&#160;        </div><div class="line"><a name="l01207"></a><span class="lineno"> 1207</span>&#160;        <span class="keywordtype">int</span> count = 0; <span class="comment">// Count of user defined polygons</span></div><div class="line"><a name="l01208"></a><span class="lineno"> 1208</span>&#160;        <span class="keywordflow">if</span> (userEllipsesOnOff == 1){</div><div class="line"><a name="l01209"></a><span class="lineno"> 1209</span>&#160;            count += <a class="code" href="read_input_8cpp.html#a34b022fe45fc2867613a3c1c34b438f6">nUserEll</a>;</div><div class="line"><a name="l01210"></a><span class="lineno"> 1210</span>&#160;        }</div><div class="line"><a name="l01211"></a><span class="lineno"> 1211</span>&#160;        </div><div class="line"><a name="l01212"></a><span class="lineno"> 1212</span>&#160;        <span class="keywordflow">if</span> (userRectanglesOnOff == 1){</div><div class="line"><a name="l01213"></a><span class="lineno"> 1213</span>&#160;            count += <a class="code" href="read_input_8cpp.html#af1cc6f1970facb5cc2a3c8213ca0831b">nUserRect</a>;</div><div class="line"><a name="l01214"></a><span class="lineno"> 1214</span>&#160;        }</div><div class="line"><a name="l01215"></a><span class="lineno"> 1215</span>&#160;        </div><div class="line"><a name="l01216"></a><span class="lineno"> 1216</span>&#160;        <span class="keywordflow">if</span> (userRecByCoord == 1) {</div><div class="line"><a name="l01217"></a><span class="lineno"> 1217</span>&#160;            count += <a class="code" href="read_input_8cpp.html#a1bf3ca80fe0d1f2fa3679ce8a674134a">nRectByCoord</a>;</div><div class="line"><a name="l01218"></a><span class="lineno"> 1218</span>&#160;        }</div><div class="line"><a name="l01219"></a><span class="lineno"> 1219</span>&#160;        </div><div class="line"><a name="l01220"></a><span class="lineno"> 1220</span>&#160;        <span class="comment">// Set nPoly to the amount of user defined polygons</span></div><div class="line"><a name="l01221"></a><span class="lineno"> 1221</span>&#160;        <a class="code" href="read_input_8cpp.html#af336784d384b9e2ab2d990f7855ecdcf">nPoly</a> = count;</div><div class="line"><a name="l01222"></a><span class="lineno"> 1222</span>&#160;        </div><div class="line"><a name="l01223"></a><span class="lineno"> 1223</span>&#160;    }</div><div class="line"><a name="l01224"></a><span class="lineno"> 1224</span>&#160;    </div><div class="line"><a name="l01225"></a><span class="lineno"> 1225</span>&#160;    inputFile.close();</div><div class="line"><a name="l01226"></a><span class="lineno"> 1226</span>&#160;</div><div class="line"><a name="l01227"></a><span class="lineno"> 1227</span>&#160;    <span class="comment">// Convert angles to rad if necessary, all functions and code require radians</span></div><div class="line"><a name="l01228"></a><span class="lineno"> 1228</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i &lt; shapeFamily.size(); i ++) {</div><div class="line"><a name="l01229"></a><span class="lineno"> 1229</span>&#160;        <span class="keywordflow">if</span> (shapeFamily[i].<a class="code" href="struct_shape.html#aab81de1625d7e318b0c39a99186118ff">angleOption</a> == 1 ) { <span class="comment">// Convert deg to rad</span></div><div class="line"><a name="l01230"></a><span class="lineno"> 1230</span>&#160;            <span class="keywordtype">double</span> temp = M_PI/180;</div><div class="line"><a name="l01231"></a><span class="lineno"> 1231</span>&#160;            shapeFamily[i].beta *= temp;</div><div class="line"><a name="l01232"></a><span class="lineno"> 1232</span>&#160;            shapeFamily[i].theta *= temp;</div><div class="line"><a name="l01233"></a><span class="lineno"> 1233</span>&#160;            shapeFamily[i].phi *= temp;</div><div class="line"><a name="l01234"></a><span class="lineno"> 1234</span>&#160;            shapeFamily[i].angleOption = 0; <span class="comment">// Angles now in radians</span></div><div class="line"><a name="l01235"></a><span class="lineno"> 1235</span>&#160;        }</div><div class="line"><a name="l01236"></a><span class="lineno"> 1236</span>&#160;    }</div><div class="line"><a name="l01237"></a><span class="lineno"> 1237</span>&#160;</div><div class="line"><a name="l01238"></a><span class="lineno"> 1238</span>&#160;</div><div class="line"><a name="l01239"></a><span class="lineno"> 1239</span>&#160;}</div><div class="line"><a name="l01240"></a><span class="lineno"> 1240</span>&#160;</div><div class="line"><a name="l01241"></a><span class="lineno"> 1241</span>&#160;<span class="comment">/****************************************************************************************/</span></div><div class="line"><a name="l01242"></a><span class="lineno"> 1242</span>&#160;<span class="comment">// Depreciated Function</span></div><div class="line"><a name="l01243"></a><span class="lineno"> 1243</span>&#160;<span class="comment">// Prints all input variables, useful for debugging.</span></div><div class="line"><a name="l01244"></a><span class="lineno"> 1244</span>&#160;<span class="comment">// NOTE: Needs to be updated. There bave been changes to input variables</span></div><div class="line"><a name="l01245"></a><span class="lineno"><a class="line" href="read_input_functions_8h.html#a11a27532ef6ef30601efe4f9e33b06a6"> 1245</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="read_input_8cpp.html#a11a27532ef6ef30601efe4f9e33b06a6">printInputVars</a>() {</div><div class="line"><a name="l01246"></a><span class="lineno"> 1246</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;npoly = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#af336784d384b9e2ab2d990f7855ecdcf">nPoly</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01247"></a><span class="lineno"> 1247</span>&#160;    std::cout&lt;&lt; <span class="stringliteral">&quot;tripleIntersections = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#aa0b6ecd1182eec9769b157aa8387e32c">tripleIntersections</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01248"></a><span class="lineno"> 1248</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;domainsize = {&quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#a5cd62663cb067d79183d8de4dd0224db">domainSize</a>[0] &lt;&lt; <span class="stringliteral">&quot;, &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#a5cd62663cb067d79183d8de4dd0224db">domainSize</a>[1] &lt;&lt; <span class="stringliteral">&quot;, &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#a5cd62663cb067d79183d8de4dd0224db">domainSize</a>[2] &lt;&lt; <span class="stringliteral">&quot;}\n&quot;</span>;</div><div class="line"><a name="l01249"></a><span class="lineno"> 1249</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;h = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#a8ee9be1b5aa75abae556de3088cba6d9">h</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01250"></a><span class="lineno"> 1250</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;visualizationMode = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#aa98b605ce677adf12fe97d6fa9076b1c">visualizationMode</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01251"></a><span class="lineno"> 1251</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;seed = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#ae21f357c223957d36046a0d71cc6aed7">seed</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01252"></a><span class="lineno"> 1252</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;keepOnlyLargestCluster = &quot;</span>&lt;&lt;<a class="code" href="read_input_8cpp.html#aea02ddd6024599612f00034e17d4e66a">keepOnlyLargestCluster</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01253"></a><span class="lineno"> 1253</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;domainSizeIncrease = {&quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#aaa9154067587782d6e6eefc9652559a6">domainSizeIncrease</a>[0]&lt;&lt;<span class="stringliteral">&quot;,&quot;</span>&lt;&lt;<a class="code" href="read_input_8cpp.html#aaa9154067587782d6e6eefc9652559a6">domainSizeIncrease</a>[1]&lt;&lt;<span class="stringliteral">&quot;,&quot;</span>&lt;&lt;<a class="code" href="read_input_8cpp.html#aaa9154067587782d6e6eefc9652559a6">domainSizeIncrease</a>[2]&lt;&lt; <span class="stringliteral">&quot;}\n&quot;</span>;</div><div class="line"><a name="l01254"></a><span class="lineno"> 1254</span>&#160;    std::cout&lt;&lt; <span class="stringliteral">&quot;boundaryFaces = {&quot;</span>&lt;&lt;<a class="code" href="read_input_8cpp.html#a51aaedc2ddf86e5f1dba79003decadb2">boundaryFaces</a>[0]&lt;&lt;<span class="stringliteral">&quot;,&quot;</span>&lt;&lt;<a class="code" href="read_input_8cpp.html#a51aaedc2ddf86e5f1dba79003decadb2">boundaryFaces</a>[1]&lt;&lt;<span class="stringliteral">&quot;,&quot;</span>&lt;&lt;<a class="code" href="read_input_8cpp.html#a51aaedc2ddf86e5f1dba79003decadb2">boundaryFaces</a>[2]&lt;&lt;<span class="stringliteral">&quot;,&quot;</span>&lt;&lt;<a class="code" href="read_input_8cpp.html#a51aaedc2ddf86e5f1dba79003decadb2">boundaryFaces</a>[3]&lt;&lt;<span class="stringliteral">&quot;,&quot;</span>&lt;&lt;<a class="code" href="read_input_8cpp.html#a51aaedc2ddf86e5f1dba79003decadb2">boundaryFaces</a>[4]&lt;&lt;<span class="stringliteral">&quot;,&quot;</span>&lt;&lt;<a class="code" href="read_input_8cpp.html#a51aaedc2ddf86e5f1dba79003decadb2">boundaryFaces</a>[5]&lt;&lt;<span class="stringliteral">&quot;}\n&quot;</span>;</div><div class="line"><a name="l01255"></a><span class="lineno"> 1255</span>&#160;    std::cout&lt;&lt; <span class="stringliteral">&quot;nFamRect = &quot;</span> &lt;&lt;<a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>&lt;&lt;std::endl;</div><div class="line"><a name="l01256"></a><span class="lineno"> 1256</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;nFamEll = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01257"></a><span class="lineno"> 1257</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#aeb1032cfdc6f748b280a4a0a59375d11">famProb</a>, <span class="stringliteral">&quot;famProb&quot;</span>, (<a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>+<a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>));</div><div class="line"><a name="l01258"></a><span class="lineno"> 1258</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#aad5e2582c7a771d1a6cb2428cf24b89f">edistr</a>, <span class="stringliteral">&quot;edistr&quot;</span>, <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>);</div><div class="line"><a name="l01259"></a><span class="lineno"> 1259</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#a11c46dd95801a4a0c48c921c5252cf40">enumPoints</a>, <span class="stringliteral">&quot;enumPoints&quot;</span>, <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>);</div><div class="line"><a name="l01260"></a><span class="lineno"> 1260</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;eAngleOption = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#a41d6b1e6a8db2ce174f09457a7703353">eAngleOption</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01261"></a><span class="lineno"> 1261</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#a61b52bf1bb1bb469d04455c26382cd1d">easpect</a>, <span class="stringliteral">&quot;easpect&quot;</span>, <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>);</div><div class="line"><a name="l01262"></a><span class="lineno"> 1262</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#a667cefc35ba997c50191b0214e91b097">etheta</a>, <span class="stringliteral">&quot;etheta&quot;</span>, <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>);</div><div class="line"><a name="l01263"></a><span class="lineno"> 1263</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#aae080e946350166ba15f5dc2568b3dcc">ephi</a>, <span class="stringliteral">&quot;ephi&quot;</span>, <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>);</div><div class="line"><a name="l01264"></a><span class="lineno"> 1264</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#ad8b6651631c9b3d5b7ab9862a74b56af">ebeta</a>, <span class="stringliteral">&quot;ebeta&quot;</span>, <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>);</div><div class="line"><a name="l01265"></a><span class="lineno"> 1265</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#ad92b299fd65194586ab189adff1d23cb">ekappa</a>, <span class="stringliteral">&quot;ekappa&quot;</span>, <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>);</div><div class="line"><a name="l01266"></a><span class="lineno"> 1266</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#a1698a1d763883d52c0083b7d6998f122">eLogMean</a>, <span class="stringliteral">&quot;eLogMean&quot;</span>, <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>);</div><div class="line"><a name="l01267"></a><span class="lineno"> 1267</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#aa7a530245765aced399fbc4b4c4fefd7">esd</a>, <span class="stringliteral">&quot;esd&quot;</span>, <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>);</div><div class="line"><a name="l01268"></a><span class="lineno"> 1268</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#ae820757151eb1b6faf235e2856d740bf">eExpMean</a>, <span class="stringliteral">&quot;eExpMean&quot;</span>, <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>);</div><div class="line"><a name="l01269"></a><span class="lineno"> 1269</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#ab28ea1d92036bb7e7c7daa0b48e891c8">econst</a>, <span class="stringliteral">&quot;econst&quot;</span>, <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>);</div><div class="line"><a name="l01270"></a><span class="lineno"> 1270</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#ae8063269aec74ddb855e2df228706c4f">emin</a>, <span class="stringliteral">&quot;emin&quot;</span>, <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>);</div><div class="line"><a name="l01271"></a><span class="lineno"> 1271</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#a672ea0daa9847198dd1ab922ca7106af">emax</a>, <span class="stringliteral">&quot;emax&quot;</span>, <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>);</div><div class="line"><a name="l01272"></a><span class="lineno"> 1272</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#aebd0bd52450df08712b3cd41dd3d103a">ealpha</a>, <span class="stringliteral">&quot;ealpha&quot;</span>, <a class="code" href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a>);</div><div class="line"><a name="l01273"></a><span class="lineno"> 1273</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#a2b56dc0d75fc7bdf8cc28a8d76bb5bb0">rdistr</a>, <span class="stringliteral">&quot;rdistr&quot;</span>, <a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>);</div><div class="line"><a name="l01274"></a><span class="lineno"> 1274</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#ae109233b102d8437168226201f534f7f">raspect</a>, <span class="stringliteral">&quot;raspect&quot;</span>, <a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>);</div><div class="line"><a name="l01275"></a><span class="lineno"> 1275</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;rAngleOption = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#a51b1c55910ea84f881a0e076b1d52d22">rAngleOption</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01276"></a><span class="lineno"> 1276</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#af7799f743bff7994bf1c3f13c06768f7">rtheta</a>, <span class="stringliteral">&quot;rtheta&quot;</span>, <a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>);</div><div class="line"><a name="l01277"></a><span class="lineno"> 1277</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#a3e4ab90db603394c70bac5bb28d17642">rphi</a>, <span class="stringliteral">&quot;rphi&quot;</span>, <a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>);</div><div class="line"><a name="l01278"></a><span class="lineno"> 1278</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#ab3b0fb1e4803a4ccb26d76feff92d66f">rbeta</a>, <span class="stringliteral">&quot;rbeta&quot;</span>, <a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>);</div><div class="line"><a name="l01279"></a><span class="lineno"> 1279</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#a707ee63e148affd4919ba06f571f4900">rLogMean</a>, <span class="stringliteral">&quot;rLogMean&quot;</span>, <a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>);</div><div class="line"><a name="l01280"></a><span class="lineno"> 1280</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#adf92ce38547577a99b68dfd3f07b7d5a">rsd</a>, <span class="stringliteral">&quot;rsd&quot;</span>, <a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>);</div><div class="line"><a name="l01281"></a><span class="lineno"> 1281</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#ae63e451c9aec7d1dd4927f49fd9ebe5b">rmin</a>, <span class="stringliteral">&quot;rmin&quot;</span>, <a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>);</div><div class="line"><a name="l01282"></a><span class="lineno"> 1282</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#aec3e303441f7bdaf97d3e9dcfc6427cf">rmax</a>, <span class="stringliteral">&quot;rmax&quot;</span>, <a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>);</div><div class="line"><a name="l01283"></a><span class="lineno"> 1283</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#aa475379828be0fec5845fcf40a010e7e">ralpha</a>, <span class="stringliteral">&quot;ralpha&quot;</span>, <a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>);</div><div class="line"><a name="l01284"></a><span class="lineno"> 1284</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#a06d46fed07577f154dc95f3429630eab">rkappa</a>, <span class="stringliteral">&quot;rkappa&quot;</span>, <a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>);</div><div class="line"><a name="l01285"></a><span class="lineno"> 1285</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#a5e07ea712b5e43f8bca080f93ad86e3f">rExpMean</a>, <span class="stringliteral">&quot;rExpMean&quot;</span>, <a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>);</div><div class="line"><a name="l01286"></a><span class="lineno"> 1286</span>&#160;    <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#a2cc23f61f56f17d18da1c225a8e3ea9b">rconst</a>, <span class="stringliteral">&quot;rconst&quot;</span>, <a class="code" href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a>);</div><div class="line"><a name="l01287"></a><span class="lineno"> 1287</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;userEllipsesOnOff = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#af93cb3f9ec0bb2490e0c2219b15aa1cf">userEllipsesOnOff</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01288"></a><span class="lineno"> 1288</span>&#160;</div><div class="line"><a name="l01289"></a><span class="lineno"> 1289</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="read_input_8cpp.html#af93cb3f9ec0bb2490e0c2219b15aa1cf">userEllipsesOnOff</a> != 0) {</div><div class="line"><a name="l01290"></a><span class="lineno"> 1290</span>&#160;        std::cout&lt;&lt;<span class="stringliteral">&quot;nUserEll = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#a34b022fe45fc2867613a3c1c34b438f6">nUserEll</a> &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l01291"></a><span class="lineno"> 1291</span>&#160;        <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#ae024abd4b5b586cb7e1014b7827389ce">ueRadii</a>, <span class="stringliteral">&quot;ueRadii&quot;</span>, nUserEll);  </div><div class="line"><a name="l01292"></a><span class="lineno"> 1292</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;urAngleOption = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#a333da043e2fa974490caf58dbd0d41b5">ueAngleOption</a> &lt;&lt;std::endl;</div><div class="line"><a name="l01293"></a><span class="lineno"> 1293</span>&#160;        <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#aa70c40ba01fa4b50e7a074f385623e8d">ueBeta</a>, <span class="stringliteral">&quot;ueBeta&quot;</span>, nUserEll);</div><div class="line"><a name="l01294"></a><span class="lineno"> 1294</span>&#160;        <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#aaaf0e486c67fa85237a618bd98de392f">ueaspect</a>, <span class="stringliteral">&quot;ueaspect&quot;</span>, nUserEll);</div><div class="line"><a name="l01295"></a><span class="lineno"> 1295</span>&#160;        <a class="code" href="read_input_functions_8h.html#a8f7ec74613090e78a50871c7561bcfb5">print2dAry</a>(<a class="code" href="read_input_8cpp.html#a2a503587fec7b29eb9ea86e888825740">uetranslation</a>, <span class="stringliteral">&quot;uetranslation&quot;</span>, nUserEll);</div><div class="line"><a name="l01296"></a><span class="lineno"> 1296</span>&#160;        <a class="code" href="read_input_functions_8h.html#a8f7ec74613090e78a50871c7561bcfb5">print2dAry</a>(<a class="code" href="read_input_8cpp.html#a21ed4fa7b41dca019fee053fb657cb4c">uenormal</a>, <span class="stringliteral">&quot;uenormal&quot;</span>, nUserEll);</div><div class="line"><a name="l01297"></a><span class="lineno"> 1297</span>&#160;        <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#a82545e822af83745e013a7b0af397758">uenumPoints</a>, <span class="stringliteral">&quot;uenumPoints&quot;</span>, nUserEll);</div><div class="line"><a name="l01298"></a><span class="lineno"> 1298</span>&#160;    }</div><div class="line"><a name="l01299"></a><span class="lineno"> 1299</span>&#160;</div><div class="line"><a name="l01300"></a><span class="lineno"> 1300</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;userRectanglesOnOff = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#ab963e6ee0512d7651d002947e0bfd1df">userRectanglesOnOff</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01301"></a><span class="lineno"> 1301</span>&#160;</div><div class="line"><a name="l01302"></a><span class="lineno"> 1302</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="read_input_8cpp.html#ab963e6ee0512d7651d002947e0bfd1df">userRectanglesOnOff</a> != 0) {</div><div class="line"><a name="l01303"></a><span class="lineno"> 1303</span>&#160;</div><div class="line"><a name="l01304"></a><span class="lineno"> 1304</span>&#160;        std::cout&lt;&lt;<span class="stringliteral">&quot;nUserRect = &quot;</span>&lt;&lt; <a class="code" href="read_input_8cpp.html#af1cc6f1970facb5cc2a3c8213ca0831b">nUserRect</a> &lt;&lt;<span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l01305"></a><span class="lineno"> 1305</span>&#160;        <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#aa405ad70b9b0ac6ecd99d129b6bd70c5">urRadii</a>, <span class="stringliteral">&quot;urRadii&quot;</span>, nUserRect);</div><div class="line"><a name="l01306"></a><span class="lineno"> 1306</span>&#160;        std::cout&lt;&lt; <span class="stringliteral">&quot;urAngleOption = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#ac96aa63bd3ea1ada8be7e9e01768f2b9">urAngleOption</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01307"></a><span class="lineno"> 1307</span>&#160;        <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#a3a221080d3c2e62421c789738a9e57bc">urBeta</a>, <span class="stringliteral">&quot;urBeta&quot;</span>, nUserRect);</div><div class="line"><a name="l01308"></a><span class="lineno"> 1308</span>&#160;        <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#aa405ad70b9b0ac6ecd99d129b6bd70c5">urRadii</a>, <span class="stringliteral">&quot;urRadii&quot;</span>, nUserRect);</div><div class="line"><a name="l01309"></a><span class="lineno"> 1309</span>&#160;        <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#a6525be673f373b6358953ce4f7dc0e51">uraspect</a>, <span class="stringliteral">&quot;uraspect&quot;</span>, nUserRect);</div><div class="line"><a name="l01310"></a><span class="lineno"> 1310</span>&#160;        <a class="code" href="read_input_functions_8h.html#a8f7ec74613090e78a50871c7561bcfb5">print2dAry</a>(<a class="code" href="read_input_8cpp.html#afe5f83bbc1b394f1fbeccb94b2b682fc">urtranslation</a>, <span class="stringliteral">&quot;urtranslation&quot;</span>, nUserRect);</div><div class="line"><a name="l01311"></a><span class="lineno"> 1311</span>&#160;        <a class="code" href="read_input_functions_8h.html#a8f7ec74613090e78a50871c7561bcfb5">print2dAry</a>(<a class="code" href="read_input_8cpp.html#a3f2127d5667258fc93d264436ab8abd5">urnormal</a>, <span class="stringliteral">&quot;urnormal&quot;</span>, nUserRect);</div><div class="line"><a name="l01312"></a><span class="lineno"> 1312</span>&#160;    }</div><div class="line"><a name="l01313"></a><span class="lineno"> 1313</span>&#160;      </div><div class="line"><a name="l01314"></a><span class="lineno"> 1314</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;userRecByCoord = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#a7ece519c4cc6ecd5512562594084e8aa">userRecByCoord</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01315"></a><span class="lineno"> 1315</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="read_input_8cpp.html#a7ece519c4cc6ecd5512562594084e8aa">userRecByCoord</a> != 0) {</div><div class="line"><a name="l01316"></a><span class="lineno"> 1316</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;nRectByCoord = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#a1bf3ca80fe0d1f2fa3679ce8a674134a">nRectByCoord</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01317"></a><span class="lineno"> 1317</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#ad98f39ca3baadc7edcbeb74e0e6d40b3">printRectCoords</a>(<a class="code" href="read_input_8cpp.html#a2c808101a3d77245f00bb544238e75b2">userRectCoordVertices</a>, <span class="stringliteral">&quot;userRectCoordVertices&quot;</span> , <a class="code" href="read_input_8cpp.html#a1bf3ca80fe0d1f2fa3679ce8a674134a">nRectByCoord</a>);  </div><div class="line"><a name="l01318"></a><span class="lineno"> 1318</span>&#160;    }</div><div class="line"><a name="l01319"></a><span class="lineno"> 1319</span>&#160;</div><div class="line"><a name="l01320"></a><span class="lineno"> 1320</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;aperture option: &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#abc39a0cf64740d1080e5c9867191fa0e">aperture</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01321"></a><span class="lineno"> 1321</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="read_input_8cpp.html#abc39a0cf64740d1080e5c9867191fa0e">aperture</a> == 1) {</div><div class="line"><a name="l01322"></a><span class="lineno"> 1322</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;meanAperture = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#a8ca71d341876667108c011c790ed33de">meanAperture</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01323"></a><span class="lineno"> 1323</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;stdAperture = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#a0b60c5d860054f964ec05348b186e86e">stdAperture</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01324"></a><span class="lineno"> 1324</span>&#160;      </div><div class="line"><a name="l01325"></a><span class="lineno"> 1325</span>&#160;    }</div><div class="line"><a name="l01326"></a><span class="lineno"> 1326</span>&#160;    <span class="keywordflow">else</span> <span class="keywordflow">if</span> (<a class="code" href="read_input_8cpp.html#abc39a0cf64740d1080e5c9867191fa0e">aperture</a> == 2) {</div><div class="line"><a name="l01327"></a><span class="lineno"> 1327</span>&#160;        <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#aafcf8c3d5090c1cda444c5a79854b434">apertureFromTransmissivity</a>, <span class="stringliteral">&quot;apertureFromTransmissivity&quot;</span>, 2);</div><div class="line"><a name="l01328"></a><span class="lineno"> 1328</span>&#160;    }</div><div class="line"><a name="l01329"></a><span class="lineno"> 1329</span>&#160;    <span class="keywordflow">else</span> <span class="keywordflow">if</span> (<a class="code" href="read_input_8cpp.html#abc39a0cf64740d1080e5c9867191fa0e">aperture</a> == 3) {</div><div class="line"><a name="l01330"></a><span class="lineno"> 1330</span>&#160;        std::cout &lt;&lt;  <span class="stringliteral">&quot;constantAperture = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#a48936b0f8f54a1cd2c7e83ca2392ec0a">constantAperture</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01331"></a><span class="lineno"> 1331</span>&#160;    }</div><div class="line"><a name="l01332"></a><span class="lineno"> 1332</span>&#160;    <span class="keywordflow">else</span> <span class="keywordflow">if</span> (<a class="code" href="read_input_8cpp.html#abc39a0cf64740d1080e5c9867191fa0e">aperture</a> == 4) {</div><div class="line"><a name="l01333"></a><span class="lineno"> 1333</span>&#160;        <a class="code" href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a>(<a class="code" href="read_input_8cpp.html#a96e535ecb2fde247beaba684f23b1c3c">lengthCorrelatedAperture</a>, <span class="stringliteral">&quot;lengthCorrelatedAperture&quot;</span>, 2);</div><div class="line"><a name="l01334"></a><span class="lineno"> 1334</span>&#160;    }</div><div class="line"><a name="l01335"></a><span class="lineno"> 1335</span>&#160; </div><div class="line"><a name="l01336"></a><span class="lineno"> 1336</span>&#160;      </div><div class="line"><a name="l01337"></a><span class="lineno"> 1337</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="read_input_8cpp.html#a6fda5f9c90f07130c1b0001301c6c945">permOption</a> == 0) {</div><div class="line"><a name="l01338"></a><span class="lineno"> 1338</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;Permeability: Function of aperture\n&quot;</span>;</div><div class="line"><a name="l01339"></a><span class="lineno"> 1339</span>&#160;    }</div><div class="line"><a name="l01340"></a><span class="lineno"> 1340</span>&#160;    <span class="keywordflow">else</span>{</div><div class="line"><a name="l01341"></a><span class="lineno"> 1341</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;ConstantPermeability = &quot;</span> &lt;&lt; <a class="code" href="read_input_8cpp.html#a903896dcf39ee23cbea885abd3bc926d">constantPermeability</a> &lt;&lt; std::endl;</div><div class="line"><a name="l01342"></a><span class="lineno"> 1342</span>&#160;    }  </div><div class="line"><a name="l01343"></a><span class="lineno"> 1343</span>&#160;}    </div><div class="line"><a name="l01344"></a><span class="lineno"> 1344</span>&#160;  </div><div class="line"><a name="l01345"></a><span class="lineno"> 1345</span>&#160;  </div><div class="line"><a name="l01346"></a><span class="lineno"> 1346</span>&#160;</div><div class="line"><a name="l01347"></a><span class="lineno"> 1347</span>&#160;</div><div class="line"><a name="l01348"></a><span class="lineno"> 1348</span>&#160;</div><div class="ttc" id="read_input_8cpp_html_a117cb72d9e60a8d11bb8a187d91314e1"><div class="ttname"><a href="read_input_8cpp.html#a117cb72d9e60a8d11bb8a187d91314e1">rExpMin</a></div><div class="ttdeci">float * rExpMin</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00201">readInput.cpp:201</a></div></div>
<div class="ttc" id="read_input_functions_8h_html_a43a54a71ca7fdbfee584667d779f5ecb"><div class="ttname"><a href="read_input_functions_8h.html#a43a54a71ca7fdbfee584667d779f5ecb">getInputAry</a></div><div class="ttdeci">void getInputAry(std::ifstream &amp;stream, T *var, int nElements)</div><div class="ttdef"><b>Definition:</b> <a href="read_input_functions_8h_source.html#l00042">readInputFunctions.h:42</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a9d32f63bd011a629cf644c120e07eda8"><div class="ttname"><a href="read_input_8cpp.html#a9d32f63bd011a629cf644c120e07eda8">p32Status</a></div><div class="ttdeci">bool * p32Status</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00468">readInput.cpp:468</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a11a27532ef6ef30601efe4f9e33b06a6"><div class="ttname"><a href="read_input_8cpp.html#a11a27532ef6ef30601efe4f9e33b06a6">printInputVars</a></div><div class="ttdeci">void printInputVars()</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l01245">readInput.cpp:1245</a></div></div>
<div class="ttc" id="struct_shape_html_a27f8a00841e3cc14fca05b44085d79f6"><div class="ttname"><a href="struct_shape.html#a27f8a00841e3cc14fca05b44085d79f6">Shape::theta</a></div><div class="ttdeci">double theta</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00439">structures.h:439</a></div></div>
<div class="ttc" id="struct_shape_html_aac849c13ef52d8ac83e2c9b1f6b73d4b"><div class="ttname"><a href="struct_shape.html#aac849c13ef52d8ac83e2c9b1f6b73d4b">Shape::expMean</a></div><div class="ttdeci">float expMean</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00466">structures.h:466</a></div></div>
<div class="ttc" id="read_input_functions_8h_html_af3ca30978155c408a22accb089cfb2f6"><div class="ttname"><a href="read_input_functions_8h.html#af3ca30978155c408a22accb089cfb2f6">getElements</a></div><div class="ttdeci">void getElements(std::ifstream &amp;stream, T *var, int nElements)</div><div class="ttdef"><b>Definition:</b> <a href="read_input_functions_8h_source.html#l00091">readInputFunctions.h:91</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aa475379828be0fec5845fcf40a010e7e"><div class="ttname"><a href="read_input_8cpp.html#aa475379828be0fec5845fcf40a010e7e">ralpha</a></div><div class="ttdeci">float * ralpha</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00292">readInput.cpp:292</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a8ee9be1b5aa75abae556de3088cba6d9"><div class="ttname"><a href="read_input_8cpp.html#a8ee9be1b5aa75abae556de3088cba6d9">h</a></div><div class="ttdeci">double h</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00021">readInput.cpp:21</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a8ca71d341876667108c011c790ed33de"><div class="ttname"><a href="read_input_8cpp.html#a8ca71d341876667108c011c790ed33de">meanAperture</a></div><div class="ttdeci">float meanAperture</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00401">readInput.cpp:401</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a333da043e2fa974490caf58dbd0d41b5"><div class="ttname"><a href="read_input_8cpp.html#a333da043e2fa974490caf58dbd0d41b5">ueAngleOption</a></div><div class="ttdeci">bool ueAngleOption</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00314">readInput.cpp:314</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a3e4ab90db603394c70bac5bb28d17642"><div class="ttname"><a href="read_input_8cpp.html#a3e4ab90db603394c70bac5bb28d17642">rphi</a></div><div class="ttdeci">float * rphi</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00269">readInput.cpp:269</a></div></div>
<div class="ttc" id="input_8h_html"><div class="ttname"><a href="input_8h.html">input.h</a></div></div>
<div class="ttc" id="read_input_8cpp_html_acbc0fff3720dd713fe1b3eb4742f2c86"><div class="ttname"><a href="read_input_8cpp.html#acbc0fff3720dd713fe1b3eb4742f2c86">userEllCoordVertices</a></div><div class="ttdeci">double * userEllCoordVertices</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00397">readInput.cpp:397</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a92d138143c536b0bc8ca70ddc1479677"><div class="ttname"><a href="read_input_8cpp.html#a92d138143c536b0bc8ca70ddc1479677">insertUserRectanglesFirst</a></div><div class="ttdeci">bool insertUserRectanglesFirst</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00096">readInput.cpp:96</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a82545e822af83745e013a7b0af397758"><div class="ttname"><a href="read_input_8cpp.html#a82545e822af83745e013a7b0af397758">uenumPoints</a></div><div class="ttdeci">unsigned int * uenumPoints</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00332">readInput.cpp:332</a></div></div>
<div class="ttc" id="struct_shape_html_ac674a8084da0711a93fb48d976467697"><div class="ttname"><a href="struct_shape.html#ac674a8084da0711a93fb48d976467697">Shape::max</a></div><div class="ttdeci">float max</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00502">structures.h:502</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a3a221080d3c2e62421c789738a9e57bc"><div class="ttname"><a href="read_input_8cpp.html#a3a221080d3c2e62421c789738a9e57bc">urBeta</a></div><div class="ttdeci">float * urBeta</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00371">readInput.cpp:371</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a6525be673f373b6358953ce4f7dc0e51"><div class="ttname"><a href="read_input_8cpp.html#a6525be673f373b6358953ce4f7dc0e51">uraspect</a></div><div class="ttdeci">float * uraspect</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00374">readInput.cpp:374</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aa98b605ce677adf12fe97d6fa9076b1c"><div class="ttname"><a href="read_input_8cpp.html#aa98b605ce677adf12fe97d6fa9076b1c">visualizationMode</a></div><div class="ttdeci">bool visualizationMode</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00036">readInput.cpp:36</a></div></div>
<div class="ttc" id="read_input_8cpp_html_af1cc6f1970facb5cc2a3c8213ca0831b"><div class="ttname"><a href="read_input_8cpp.html#af1cc6f1970facb5cc2a3c8213ca0831b">nUserRect</a></div><div class="ttdeci">int nUserRect</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00360">readInput.cpp:360</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a11c46dd95801a4a0c48c921c5252cf40"><div class="ttname"><a href="read_input_8cpp.html#a11c46dd95801a4a0c48c921c5252cf40">enumPoints</a></div><div class="ttdeci">unsigned int * enumPoints</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00158">readInput.cpp:158</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aafcf8c3d5090c1cda444c5a79854b434"><div class="ttname"><a href="read_input_8cpp.html#aafcf8c3d5090c1cda444c5a79854b434">apertureFromTransmissivity</a></div><div class="ttdeci">float apertureFromTransmissivity[2]</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00420">readInput.cpp:420</a></div></div>
<div class="ttc" id="read_input_8cpp_html_ae024abd4b5b586cb7e1014b7827389ce"><div class="ttname"><a href="read_input_8cpp.html#ae024abd4b5b586cb7e1014b7827389ce">ueRadii</a></div><div class="ttdeci">float * ueRadii</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00317">readInput.cpp:317</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aea02ddd6024599612f00034e17d4e66a"><div class="ttname"><a href="read_input_8cpp.html#aea02ddd6024599612f00034e17d4e66a">keepOnlyLargestCluster</a></div><div class="ttdeci">bool keepOnlyLargestCluster</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00061">readInput.cpp:61</a></div></div>
<div class="ttc" id="read_input_8cpp_html_ae8063269aec74ddb855e2df228706c4f"><div class="ttname"><a href="read_input_8cpp.html#ae8063269aec74ddb855e2df228706c4f">emin</a></div><div class="ttdeci">float * emin</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00222">readInput.cpp:222</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aa7a530245765aced399fbc4b4c4fefd7"><div class="ttname"><a href="read_input_8cpp.html#aa7a530245765aced399fbc4b4c4fefd7">esd</a></div><div class="ttdeci">float * esd</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00189">readInput.cpp:189</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a6fda5f9c90f07130c1b0001301c6c945"><div class="ttname"><a href="read_input_8cpp.html#a6fda5f9c90f07130c1b0001301c6c945">permOption</a></div><div class="ttdeci">bool permOption</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00349">readInput.cpp:349</a></div></div>
<div class="ttc" id="read_input_8cpp_html_ada6852d4da13aa222e5b959bf71e89d4"><div class="ttname"><a href="read_input_8cpp.html#ada6852d4da13aa222e5b959bf71e89d4">ignoreBoundaryFaces</a></div><div class="ttdeci">bool ignoreBoundaryFaces</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00473">readInput.cpp:473</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a2a503587fec7b29eb9ea86e888825740"><div class="ttname"><a href="read_input_8cpp.html#a2a503587fec7b29eb9ea86e888825740">uetranslation</a></div><div class="ttdeci">double * uetranslation</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00326">readInput.cpp:326</a></div></div>
<div class="ttc" id="read_input_8cpp_html_ab3b0fb1e4803a4ccb26d76feff92d66f"><div class="ttname"><a href="read_input_8cpp.html#ab3b0fb1e4803a4ccb26d76feff92d66f">rbeta</a></div><div class="ttdeci">float * rbeta</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00272">readInput.cpp:272</a></div></div>
<div class="ttc" id="struct_shape_html_ae1d2c2e5ad0273aed7474f3c4f7b8b7c"><div class="ttname"><a href="struct_shape.html#ae1d2c2e5ad0273aed7474f3c4f7b8b7c">Shape::constRadi</a></div><div class="ttdeci">float constRadi</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00496">structures.h:496</a></div></div>
<div class="ttc" id="read_input_8cpp_html_af5c3c3acc9bc409f6a0e8c5f9feb5357"><div class="ttname"><a href="read_input_8cpp.html#af5c3c3acc9bc409f6a0e8c5f9feb5357">nEllNodes</a></div><div class="ttdeci">unsigned int nEllNodes</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00389">readInput.cpp:389</a></div></div>
<div class="ttc" id="read_input_8cpp_html_ad47617e2251da4eb87c56365e217c8e3"><div class="ttname"><a href="read_input_8cpp.html#ad47617e2251da4eb87c56365e217c8e3">stopCondition</a></div><div class="ttdeci">short stopCondition</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00012">readInput.cpp:12</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a71b31a03f80cb26d46b69c9e96fe032b"><div class="ttname"><a href="read_input_8cpp.html#a71b31a03f80cb26d46b69c9e96fe032b">nFamRect</a></div><div class="ttdeci">int nFamRect</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00116">readInput.cpp:116</a></div></div>
<div class="ttc" id="struct_shape_html_a874e4756ad81f2e6f135e066bb0b4347"><div class="ttname"><a href="struct_shape.html#a874e4756ad81f2e6f135e066bb0b4347">Shape::betaDistribution</a></div><div class="ttdeci">bool betaDistribution</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00431">structures.h:431</a></div></div>
<div class="ttc" id="struct_shape_html_a858d838d438a5288e71902722119cb68"><div class="ttname"><a href="struct_shape.html#a858d838d438a5288e71902722119cb68">Shape::phi</a></div><div class="ttdeci">double phi</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00443">structures.h:443</a></div></div>
<div class="ttc" id="struct_shape_html_a0d1fd1363bacd61560809dc379d17363"><div class="ttname"><a href="struct_shape.html#a0d1fd1363bacd61560809dc379d17363">Shape::thetaList</a></div><div class="ttdeci">float * thetaList</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00402">structures.h:402</a></div></div>
<div class="ttc" id="read_input_8cpp_html_ada3b91179b46162c80386d76958f8dd3"><div class="ttname"><a href="read_input_8cpp.html#ada3b91179b46162c80386d76958f8dd3">nEllByCoord</a></div><div class="ttdeci">unsigned int nEllByCoord</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00386">readInput.cpp:386</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a7ece519c4cc6ecd5512562594084e8aa"><div class="ttname"><a href="read_input_8cpp.html#a7ece519c4cc6ecd5512562594084e8aa">userRecByCoord</a></div><div class="ttdeci">bool userRecByCoord</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00340">readInput.cpp:340</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a66471dd0571be27dea62906d930ef883"><div class="ttname"><a href="read_input_8cpp.html#a66471dd0571be27dea62906d930ef883">outputAcceptedRadiiPerFamily</a></div><div class="ttdeci">bool outputAcceptedRadiiPerFamily</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00082">readInput.cpp:82</a></div></div>
<div class="ttc" id="read_input_8cpp_html_ab963e6ee0512d7651d002947e0bfd1df"><div class="ttname"><a href="read_input_8cpp.html#ab963e6ee0512d7651d002947e0bfd1df">userRectanglesOnOff</a></div><div class="ttdeci">bool userRectanglesOnOff</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00336">readInput.cpp:336</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a9b979283d8d40a1417171c28a1b1d23f"><div class="ttname"><a href="read_input_8cpp.html#a9b979283d8d40a1417171c28a1b1d23f">printRejectReasons</a></div><div class="ttdeci">bool printRejectReasons</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00067">readInput.cpp:67</a></div></div>
<div class="ttc" id="struct_shape_html_abbf3338ea5ef5e026eed0423cc69dc7f"><div class="ttname"><a href="struct_shape.html#abbf3338ea5ef5e026eed0423cc69dc7f">Shape::kappa</a></div><div class="ttdeci">double kappa</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00448">structures.h:448</a></div></div>
<div class="ttc" id="read_input_8cpp_html_af336784d384b9e2ab2d990f7855ecdcf"><div class="ttname"><a href="read_input_8cpp.html#af336784d384b9e2ab2d990f7855ecdcf">nPoly</a></div><div class="ttdeci">unsigned int nPoly</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00015">readInput.cpp:15</a></div></div>
<div class="ttc" id="read_input_8cpp_html_af93cb3f9ec0bb2490e0c2219b15aa1cf"><div class="ttname"><a href="read_input_8cpp.html#af93cb3f9ec0bb2490e0c2219b15aa1cf">userEllipsesOnOff</a></div><div class="ttdeci">bool userEllipsesOnOff</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00306">readInput.cpp:306</a></div></div>
<div class="ttc" id="read_input_functions_8cpp_html_a24ac2ea59c066cbc9c9c5334dec3bc49"><div class="ttname"><a href="read_input_functions_8cpp.html#a24ac2ea59c066cbc9c9c5334dec3bc49">getRectCoords</a></div><div class="ttdeci">void getRectCoords(std::ifstream &amp;stream, double *var, int nRectangles)</div><div class="ttdef"><b>Definition:</b> <a href="read_input_functions_8cpp_source.html#l00056">readInputFunctions.cpp:56</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a74df85297c0276a08a9629c806c8cfb3"><div class="ttname"><a href="read_input_8cpp.html#a74df85297c0276a08a9629c806c8cfb3">rLogMax</a></div><div class="ttdeci">float * rLogMax</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00198">readInput.cpp:198</a></div></div>
<div class="ttc" id="read_input_8cpp_html_ab28ea1d92036bb7e7c7daa0b48e891c8"><div class="ttname"><a href="read_input_8cpp.html#ab28ea1d92036bb7e7c7daa0b48e891c8">econst</a></div><div class="ttdeci">float * econst</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00219">readInput.cpp:219</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aebd0bd52450df08712b3cd41dd3d103a"><div class="ttname"><a href="read_input_8cpp.html#aebd0bd52450df08712b3cd41dd3d103a">ealpha</a></div><div class="ttdeci">float * ealpha</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00228">readInput.cpp:228</a></div></div>
<div class="ttc" id="read_input_8cpp_html_adc6d51fe3f946fa8ee9f36d20c291be7"><div class="ttname"><a href="read_input_8cpp.html#adc6d51fe3f946fa8ee9f36d20c291be7">rLayer</a></div><div class="ttdeci">int * rLayer</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00453">readInput.cpp:453</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a9af5f928fea3353fc4009118630b3f52"><div class="ttname"><a href="read_input_8cpp.html#a9af5f928fea3353fc4009118630b3f52">getInput</a></div><div class="ttdeci">void getInput(char *input, std::vector&lt; Shape &gt; &amp;shapeFamily)</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00485">readInput.cpp:485</a></div></div>
<div class="ttc" id="struct_shape_html_a0ce256fc0e226ea6559786a2ae9d007f"><div class="ttname"><a href="struct_shape.html#a0ce256fc0e226ea6559786a2ae9d007f">Shape::layer</a></div><div class="ttdeci">short layer</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00412">structures.h:412</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aa405ad70b9b0ac6ecd99d129b6bd70c5"><div class="ttname"><a href="read_input_8cpp.html#aa405ad70b9b0ac6ecd99d129b6bd70c5">urRadii</a></div><div class="ttdeci">float * urRadii</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00363">readInput.cpp:363</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a426530b67e9c11fe1c8a2aff96928622"><div class="ttname"><a href="read_input_8cpp.html#a426530b67e9c11fe1c8a2aff96928622">eLogMax</a></div><div class="ttdeci">float * eLogMax</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00210">readInput.cpp:210</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a022634b7266251d1c40527f00cf745e2"><div class="ttname"><a href="read_input_8cpp.html#a022634b7266251d1c40527f00cf745e2">rbetaDistribution</a></div><div class="ttdeci">bool * rbetaDistribution</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00092">readInput.cpp:92</a></div></div>
<div class="ttc" id="read_input_8cpp_html_ad92b299fd65194586ab189adff1d23cb"><div class="ttname"><a href="read_input_8cpp.html#ad92b299fd65194586ab189adff1d23cb">ekappa</a></div><div class="ttdeci">float * ekappa</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00183">readInput.cpp:183</a></div></div>
<div class="ttc" id="struct_shape_html_a3ce69d18bbb29c85a319ccbdb62d70f8"><div class="ttname"><a href="struct_shape.html#a3ce69d18bbb29c85a319ccbdb62d70f8">Shape::logMin</a></div><div class="ttdeci">float logMin</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00490">structures.h:490</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a2c808101a3d77245f00bb544238e75b2"><div class="ttname"><a href="read_input_8cpp.html#a2c808101a3d77245f00bb544238e75b2">userRectCoordVertices</a></div><div class="ttdeci">double * userRectCoordVertices</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00393">readInput.cpp:393</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aaaf0e486c67fa85237a618bd98de392f"><div class="ttname"><a href="read_input_8cpp.html#aaaf0e486c67fa85237a618bd98de392f">ueaspect</a></div><div class="ttdeci">float * ueaspect</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00323">readInput.cpp:323</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a2bd7a59b7575323479f4cdd95e84505e"><div class="ttname"><a href="read_input_8cpp.html#a2bd7a59b7575323479f4cdd95e84505e">eLayer</a></div><div class="ttdeci">int * eLayer</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00459">readInput.cpp:459</a></div></div>
<div class="ttc" id="read_input_8cpp_html_ad8b6651631c9b3d5b7ab9862a74b56af"><div class="ttname"><a href="read_input_8cpp.html#ad8b6651631c9b3d5b7ab9862a74b56af">ebeta</a></div><div class="ttdeci">float * ebeta</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00178">readInput.cpp:178</a></div></div>
<div class="ttc" id="struct_shape_html_aab81de1625d7e318b0c39a99186118ff"><div class="ttname"><a href="struct_shape.html#aab81de1625d7e318b0c39a99186118ff">Shape::angleOption</a></div><div class="ttdeci">bool angleOption</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00426">structures.h:426</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a8a68f69e78f6f9c011b7688ef3c48166"><div class="ttname"><a href="read_input_8cpp.html#a8a68f69e78f6f9c011b7688ef3c48166">layerVol</a></div><div class="ttdeci">float * layerVol</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00447">readInput.cpp:447</a></div></div>
<div class="ttc" id="struct_shape_html_ad3faf14baf1d50b97a8ae243721213af"><div class="ttname"><a href="struct_shape.html#ad3faf14baf1d50b97a8ae243721213af">Shape::sd</a></div><div class="ttdeci">float sd</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00486">structures.h:486</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a2cc23f61f56f17d18da1c225a8e3ea9b"><div class="ttname"><a href="read_input_8cpp.html#a2cc23f61f56f17d18da1c225a8e3ea9b">rconst</a></div><div class="ttdeci">float * rconst</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00302">readInput.cpp:302</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a6eb19c17be97a0cb87c6edec074fe77c"><div class="ttname"><a href="read_input_8cpp.html#a6eb19c17be97a0cb87c6edec074fe77c">rExpMax</a></div><div class="ttdeci">float * rExpMax</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00204">readInput.cpp:204</a></div></div>
<div class="ttc" id="read_input_functions_8h_html_adb0e78d29aea2d97dcae112fa8c1b302"><div class="ttname"><a href="read_input_functions_8h.html#adb0e78d29aea2d97dcae112fa8c1b302">get2dAry</a></div><div class="ttdeci">void get2dAry(std::ifstream &amp;stream, T *var, int rowSize)</div><div class="ttdef"><b>Definition:</b> <a href="read_input_functions_8h_source.html#l00026">readInputFunctions.h:26</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a06d46fed07577f154dc95f3429630eab"><div class="ttname"><a href="read_input_8cpp.html#a06d46fed07577f154dc95f3429630eab">rkappa</a></div><div class="ttdeci">float * rkappa</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00277">readInput.cpp:277</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a672ea0daa9847198dd1ab922ca7106af"><div class="ttname"><a href="read_input_8cpp.html#a672ea0daa9847198dd1ab922ca7106af">emax</a></div><div class="ttdeci">float * emax</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00225">readInput.cpp:225</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a96e535ecb2fde247beaba684f23b1c3c"><div class="ttname"><a href="read_input_8cpp.html#a96e535ecb2fde247beaba684f23b1c3c">lengthCorrelatedAperture</a></div><div class="ttdeci">double lengthCorrelatedAperture[2]</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00429">readInput.cpp:429</a></div></div>
<div class="ttc" id="read_input_8cpp_html_ae63e451c9aec7d1dd4927f49fd9ebe5b"><div class="ttname"><a href="read_input_8cpp.html#ae63e451c9aec7d1dd4927f49fd9ebe5b">rmin</a></div><div class="ttdeci">float * rmin</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00286">readInput.cpp:286</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a1698a1d763883d52c0083b7d6998f122"><div class="ttname"><a href="read_input_8cpp.html#a1698a1d763883d52c0083b7d6998f122">eLogMean</a></div><div class="ttdeci">float * eLogMean</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00186">readInput.cpp:186</a></div></div>
<div class="ttc" id="read_input_8cpp_html_abd9fdedaba98f63d68fe3bb9d9098f63"><div class="ttname"><a href="read_input_8cpp.html#abd9fdedaba98f63d68fe3bb9d9098f63">radiiListIncrease</a></div><div class="ttdeci">float radiiListIncrease</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00026">readInput.cpp:26</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a0071fcf088e13e14d3cfa0c15e33e363"><div class="ttname"><a href="read_input_8cpp.html#a0071fcf088e13e14d3cfa0c15e33e363">disableFram</a></div><div class="ttdeci">bool disableFram</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00030">readInput.cpp:30</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aaf09f7cf249c6fd6247821bc01ead90c"><div class="ttname"><a href="read_input_8cpp.html#aaf09f7cf249c6fd6247821bc01ead90c">nFamEll</a></div><div class="ttdeci">int nFamEll</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00120">readInput.cpp:120</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a83faff54fdd582d6cfb84622ca160bf5"><div class="ttname"><a href="read_input_8cpp.html#a83faff54fdd582d6cfb84622ca160bf5">numOfLayers</a></div><div class="ttdeci">int numOfLayers</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00476">readInput.cpp:476</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a134553e238f08cfa5e1dcf95d19a55a2"><div class="ttname"><a href="read_input_8cpp.html#a134553e238f08cfa5e1dcf95d19a55a2">r_p32Targets</a></div><div class="ttdeci">float * r_p32Targets</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00296">readInput.cpp:296</a></div></div>
<div class="ttc" id="read_input_functions_8cpp_html_a357980bcda25432dcf68b2f19718ed32"><div class="ttname"><a href="read_input_functions_8cpp.html#a357980bcda25432dcf68b2f19718ed32">searchVar</a></div><div class="ttdeci">void searchVar(std::ifstream &amp;stream, std::string search)</div><div class="ttdef"><b>Definition:</b> <a href="read_input_functions_8cpp_source.html#l00014">readInputFunctions.cpp:14</a></div></div>
<div class="ttc" id="read_input_functions_8cpp_html_ad98f39ca3baadc7edcbeb74e0e6d40b3"><div class="ttname"><a href="read_input_functions_8cpp.html#ad98f39ca3baadc7edcbeb74e0e6d40b3">printRectCoords</a></div><div class="ttdeci">void printRectCoords(double *var, std::string varName, int nRectangles)</div><div class="ttdef"><b>Definition:</b> <a href="read_input_functions_8cpp_source.html#l00095">readInputFunctions.cpp:95</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a41d6b1e6a8db2ce174f09457a7703353"><div class="ttname"><a href="read_input_8cpp.html#a41d6b1e6a8db2ce174f09457a7703353">eAngleOption</a></div><div class="ttdeci">bool eAngleOption</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00163">readInput.cpp:163</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a7ff1f3d206d8aa29d1ef913a29a4d913"><div class="ttname"><a href="read_input_8cpp.html#a7ff1f3d206d8aa29d1ef913a29a4d913">rLogMin</a></div><div class="ttdeci">float * rLogMin</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00195">readInput.cpp:195</a></div></div>
<div class="ttc" id="read_input_functions_8h_html_a8f7ec74613090e78a50871c7561bcfb5"><div class="ttname"><a href="read_input_functions_8h.html#a8f7ec74613090e78a50871c7561bcfb5">print2dAry</a></div><div class="ttdeci">void print2dAry(T *var, std::string varName, int rowSize)</div><div class="ttdef"><b>Definition:</b> <a href="read_input_functions_8h_source.html#l00075">readInputFunctions.h:75</a></div></div>
<div class="ttc" id="read_input_functions_8h_html_a8c6b94217eb5485aa3094baed72ed93f"><div class="ttname"><a href="read_input_functions_8h.html#a8c6b94217eb5485aa3094baed72ed93f">printAry</a></div><div class="ttdeci">void printAry(T *var, std::string varName, int nElements)</div><div class="ttdef"><b>Definition:</b> <a href="read_input_functions_8h_source.html#l00057">readInputFunctions.h:57</a></div></div>
<div class="ttc" id="struct_shape_html_adcf523f838d1c624bd9d13931a342e29"><div class="ttname"><a href="struct_shape.html#adcf523f838d1c624bd9d13931a342e29">Shape::expMax</a></div><div class="ttdeci">float expMax</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00478">structures.h:478</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a707ee63e148affd4919ba06f571f4900"><div class="ttname"><a href="read_input_8cpp.html#a707ee63e148affd4919ba06f571f4900">rLogMean</a></div><div class="ttdeci">float * rLogMean</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00280">readInput.cpp:280</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a03ac7830eb87def8d67cc0c95b24ec82"><div class="ttname"><a href="read_input_8cpp.html#a03ac7830eb87def8d67cc0c95b24ec82">layers</a></div><div class="ttdeci">float * layers</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00443">readInput.cpp:443</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a1c0f1e135986f63c343fac357913481f"><div class="ttname"><a href="read_input_8cpp.html#a1c0f1e135986f63c343fac357913481f">outputFinalRadiiPerFamily</a></div><div class="ttdeci">bool outputFinalRadiiPerFamily</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00074">readInput.cpp:74</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a4888656752ebc389d0940c77e3c953ce"><div class="ttname"><a href="read_input_8cpp.html#a4888656752ebc389d0940c77e3c953ce">ebetaDistribution</a></div><div class="ttdeci">bool * ebetaDistribution</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00087">readInput.cpp:87</a></div></div>
<div class="ttc" id="generating_points_8h_html"><div class="ttname"><a href="generating_points_8h.html">generatingPoints.h</a></div></div>
<div class="ttc" id="read_input_functions_8cpp_html_ace2678acc2713901e5e84f0b88d27029"><div class="ttname"><a href="read_input_functions_8cpp.html#ace2678acc2713901e5e84f0b88d27029">getCords</a></div><div class="ttdeci">void getCords(std::ifstream &amp;stream, double *outAry, int nPoly, int nVertices)</div><div class="ttdef"><b>Definition:</b> <a href="read_input_functions_8cpp_source.html#l00077">readInputFunctions.cpp:77</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a34b022fe45fc2867613a3c1c34b438f6"><div class="ttname"><a href="read_input_8cpp.html#a34b022fe45fc2867613a3c1c34b438f6">nUserEll</a></div><div class="ttdeci">int nUserEll</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00309">readInput.cpp:309</a></div></div>
<div class="ttc" id="read_input_8cpp_html_ae21f357c223957d36046a0d71cc6aed7"><div class="ttname"><a href="read_input_8cpp.html#ae21f357c223957d36046a0d71cc6aed7">seed</a></div><div class="ttdeci">unsigned int seed</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00105">readInput.cpp:105</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a3f2127d5667258fc93d264436ab8abd5"><div class="ttname"><a href="read_input_8cpp.html#a3f2127d5667258fc93d264436ab8abd5">urnormal</a></div><div class="ttdeci">double * urnormal</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00380">readInput.cpp:380</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a51aaedc2ddf86e5f1dba79003decadb2"><div class="ttname"><a href="read_input_8cpp.html#a51aaedc2ddf86e5f1dba79003decadb2">boundaryFaces</a></div><div class="ttdeci">bool boundaryFaces[6]</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00052">readInput.cpp:52</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a1bf3ca80fe0d1f2fa3679ce8a674134a"><div class="ttname"><a href="read_input_8cpp.html#a1bf3ca80fe0d1f2fa3679ce8a674134a">nRectByCoord</a></div><div class="ttdeci">unsigned int nRectByCoord</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00383">readInput.cpp:383</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a51b1c55910ea84f881a0e076b1d52d22"><div class="ttname"><a href="read_input_8cpp.html#a51b1c55910ea84f881a0e076b1d52d22">rAngleOption</a></div><div class="ttdeci">bool rAngleOption</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00251">readInput.cpp:251</a></div></div>
<div class="ttc" id="read_input_8cpp_html_ae820757151eb1b6faf235e2856d740bf"><div class="ttname"><a href="read_input_8cpp.html#ae820757151eb1b6faf235e2856d740bf">eExpMean</a></div><div class="ttdeci">float * eExpMean</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00192">readInput.cpp:192</a></div></div>
<div class="ttc" id="struct_shape_html_ab48639160dae4dfe2e3a0a55ffa5a691"><div class="ttname"><a href="struct_shape.html#ab48639160dae4dfe2e3a0a55ffa5a691">Shape::beta</a></div><div class="ttdeci">float beta</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00435">structures.h:435</a></div></div>
<div class="ttc" id="struct_shape_html_a8ab95adcaf91af7ef364bdaeca382154"><div class="ttname"><a href="struct_shape.html#a8ab95adcaf91af7ef364bdaeca382154">Shape::expMin</a></div><div class="ttdeci">float expMin</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00474">structures.h:474</a></div></div>
<div class="ttc" id="struct_shape_html_a99702dd591a365a549aa5cc9537046a0"><div class="ttname"><a href="struct_shape.html#a99702dd591a365a549aa5cc9537046a0">Shape::expLambda</a></div><div class="ttdeci">float expLambda</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00470">structures.h:470</a></div></div>
<div class="ttc" id="struct_shape_html_a59e4810d42b9b0cc47e6a50afea0741b"><div class="ttname"><a href="struct_shape.html#a59e4810d42b9b0cc47e6a50afea0741b">Shape::min</a></div><div class="ttdeci">float min</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00499">structures.h:499</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aaa9154067587782d6e6eefc9652559a6"><div class="ttname"><a href="read_input_8cpp.html#aaa9154067587782d6e6eefc9652559a6">domainSizeIncrease</a></div><div class="ttdeci">float domainSizeIncrease[3]</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00111">readInput.cpp:111</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aa0b6ecd1182eec9769b157aa8387e32c"><div class="ttname"><a href="read_input_8cpp.html#aa0b6ecd1182eec9769b157aa8387e32c">tripleIntersections</a></div><div class="ttdeci">bool tripleIntersections</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00041">readInput.cpp:41</a></div></div>
<div class="ttc" id="struct_shape_html_a66a52f9200f362ec1e754c5211e6ba6c"><div class="ttname"><a href="struct_shape.html#a66a52f9200f362ec1e754c5211e6ba6c">Shape::alpha</a></div><div class="ttdeci">float alpha</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00505">structures.h:505</a></div></div>
<div class="ttc" id="struct_shape_html_a463c3c0ba9465daaac854eaeccdb3341"><div class="ttname"><a href="struct_shape.html#a463c3c0ba9465daaac854eaeccdb3341">Shape::numPoints</a></div><div class="ttdeci">short numPoints</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00399">structures.h:399</a></div></div>
<div class="ttc" id="read_input_8cpp_html_adf0af844c6ea7273c4fdee84e0dda5c2"><div class="ttname"><a href="read_input_8cpp.html#adf0af844c6ea7273c4fdee84e0dda5c2">famProbOriginal</a></div><div class="ttdeci">float * famProbOriginal</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00137">readInput.cpp:137</a></div></div>
<div class="ttc" id="struct_shape_html_a58884d0543597d129cd6c118d2c2ad61"><div class="ttname"><a href="struct_shape.html#a58884d0543597d129cd6c118d2c2ad61">Shape::logMax</a></div><div class="ttdeci">float logMax</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00493">structures.h:493</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a3718da9decab4e36a1011af51ab11bd7"><div class="ttname"><a href="read_input_8cpp.html#a3718da9decab4e36a1011af51ab11bd7">userEllByCoord</a></div><div class="ttdeci">bool userEllByCoord</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00344">readInput.cpp:344</a></div></div>
<div class="ttc" id="read_input_8cpp_html_abc39a0cf64740d1080e5c9867191fa0e"><div class="ttname"><a href="read_input_8cpp.html#abc39a0cf64740d1080e5c9867191fa0e">aperture</a></div><div class="ttdeci">int aperture</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00413">readInput.cpp:413</a></div></div>
<div class="ttc" id="struct_shape_html_a01b965e10318731a32fa68f0c87c9f20"><div class="ttname"><a href="struct_shape.html#a01b965e10318731a32fa68f0c87c9f20">Shape::distributionType</a></div><div class="ttdeci">short distributionType</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00396">structures.h:396</a></div></div>
<div class="ttc" id="read_input_8cpp_html_ac96aa63bd3ea1ada8be7e9e01768f2b9"><div class="ttname"><a href="read_input_8cpp.html#ac96aa63bd3ea1ada8be7e9e01768f2b9">urAngleOption</a></div><div class="ttdeci">bool urAngleOption</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00368">readInput.cpp:368</a></div></div>
<div class="ttc" id="struct_shape_html_a6126c3f7cd57df03350d4b58b844bba1"><div class="ttname"><a href="struct_shape.html#a6126c3f7cd57df03350d4b58b844bba1">Shape::aspectRatio</a></div><div class="ttdeci">float aspectRatio</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00415">structures.h:415</a></div></div>
<div class="ttc" id="struct_shape_html_a0b4a5b43302221719982e9b5bbd9cbae"><div class="ttname"><a href="struct_shape.html#a0b4a5b43302221719982e9b5bbd9cbae">Shape::mean</a></div><div class="ttdeci">float mean</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00482">structures.h:482</a></div></div>
<div class="ttc" id="read_input_8cpp_html_af7799f743bff7994bf1c3f13c06768f7"><div class="ttname"><a href="read_input_8cpp.html#af7799f743bff7994bf1c3f13c06768f7">rtheta</a></div><div class="ttdeci">float * rtheta</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00264">readInput.cpp:264</a></div></div>
<div class="ttc" id="read_input_8cpp_html_ae109233b102d8437168226201f534f7f"><div class="ttname"><a href="read_input_8cpp.html#ae109233b102d8437168226201f534f7f">raspect</a></div><div class="ttdeci">float * raspect</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00246">readInput.cpp:246</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a21ed4fa7b41dca019fee053fb657cb4c"><div class="ttname"><a href="read_input_8cpp.html#a21ed4fa7b41dca019fee053fb657cb4c">uenormal</a></div><div class="ttdeci">double * uenormal</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00329">readInput.cpp:329</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a5e07ea712b5e43f8bca080f93ad86e3f"><div class="ttname"><a href="read_input_8cpp.html#a5e07ea712b5e43f8bca080f93ad86e3f">rExpMean</a></div><div class="ttdeci">float * rExpMean</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00299">readInput.cpp:299</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aa70c40ba01fa4b50e7a074f385623e8d"><div class="ttname"><a href="read_input_8cpp.html#aa70c40ba01fa4b50e7a074f385623e8d">ueBeta</a></div><div class="ttdeci">float * ueBeta</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00320">readInput.cpp:320</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aaf0d6444330f4a66638db81ca592e2a5"><div class="ttname"><a href="read_input_8cpp.html#aaf0d6444330f4a66638db81ca592e2a5">forceLargeFractures</a></div><div class="ttdeci">bool forceLargeFractures</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00102">readInput.cpp:102</a></div></div>
<div class="ttc" id="struct_shape_html_acb8154ed9d7be6b37a7b83f44efb0bfb"><div class="ttname"><a href="struct_shape.html#acb8154ed9d7be6b37a7b83f44efb0bfb">Shape::p32Target</a></div><div class="ttdeci">float p32Target</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00418">structures.h:418</a></div></div>
<div class="ttc" id="read_input_8cpp_html_afe5f83bbc1b394f1fbeccb94b2b682fc"><div class="ttname"><a href="read_input_8cpp.html#afe5f83bbc1b394f1fbeccb94b2b682fc">urtranslation</a></div><div class="ttdeci">double * urtranslation</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00377">readInput.cpp:377</a></div></div>
<div class="ttc" id="struct_shape_html_a766d04a69991e931ba2176a927c747cb"><div class="ttname"><a href="struct_shape.html#a766d04a69991e931ba2176a927c747cb">Shape::shapeFamily</a></div><div class="ttdeci">short shapeFamily</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00393">structures.h:393</a></div></div>
<div class="ttc" id="generating_points_8cpp_html_a15a7dfd1320eb3c7c3cc2c53ed4ba2c1"><div class="ttname"><a href="generating_points_8cpp.html#a15a7dfd1320eb3c7c3cc2c53ed4ba2c1">generateTheta</a></div><div class="ttdeci">void generateTheta(float *&amp;thetaArray, float aspectRatio, int nPoints)</div><div class="ttdef"><b>Definition:</b> <a href="generating_points_8cpp_source.html#l00224">generatingPoints.cpp:224</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aeb1032cfdc6f748b280a4a0a59375d11"><div class="ttname"><a href="read_input_8cpp.html#aeb1032cfdc6f748b280a4a0a59375d11">famProb</a></div><div class="ttdeci">float * famProb</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00133">readInput.cpp:133</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a61b52bf1bb1bb469d04455c26382cd1d"><div class="ttname"><a href="read_input_8cpp.html#a61b52bf1bb1bb469d04455c26382cd1d">easpect</a></div><div class="ttdeci">float * easpect</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00151">readInput.cpp:151</a></div></div>
<div class="ttc" id="read_input_8cpp_html_ad29409829ae78f5f928f417a2a7b265b"><div class="ttname"><a href="read_input_8cpp.html#ad29409829ae78f5f928f417a2a7b265b">rejectsPerFracture</a></div><div class="ttdeci">int rejectsPerFracture</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00439">readInput.cpp:439</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a3c659d4b1e5810ea1f21035b2444d9cd"><div class="ttname"><a href="read_input_8cpp.html#a3c659d4b1e5810ea1f21035b2444d9cd">e_p32Targets</a></div><div class="ttdeci">float * e_p32Targets</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00232">readInput.cpp:232</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a2b56dc0d75fc7bdf8cc28a8d76bb5bb0"><div class="ttname"><a href="read_input_8cpp.html#a2b56dc0d75fc7bdf8cc28a8d76bb5bb0">rdistr</a></div><div class="ttdeci">unsigned int * rdistr</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00243">readInput.cpp:243</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a48936b0f8f54a1cd2c7e83ca2392ec0a"><div class="ttname"><a href="read_input_8cpp.html#a48936b0f8f54a1cd2c7e83ca2392ec0a">constantAperture</a></div><div class="ttdeci">double constantAperture</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00423">readInput.cpp:423</a></div></div>
<div class="ttc" id="struct_shape_html"><div class="ttname"><a href="struct_shape.html">Shape</a></div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00390">structures.h:390</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aad5e2582c7a771d1a6cb2428cf24b89f"><div class="ttname"><a href="read_input_8cpp.html#aad5e2582c7a771d1a6cb2428cf24b89f">edistr</a></div><div class="ttdeci">int * edistr</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00148">readInput.cpp:148</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a6fc4e503b3c7fbcfbb51832ae2201e70"><div class="ttname"><a href="read_input_8cpp.html#a6fc4e503b3c7fbcfbb51832ae2201e70">outputAllRadii</a></div><div class="ttdeci">bool outputAllRadii</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00357">readInput.cpp:357</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aec3e303441f7bdaf97d3e9dcfc6427cf"><div class="ttname"><a href="read_input_8cpp.html#aec3e303441f7bdaf97d3e9dcfc6427cf">rmax</a></div><div class="ttdeci">float * rmax</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00289">readInput.cpp:289</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aafcda2db9237d5d60b08fb6c302362ff"><div class="ttname"><a href="read_input_8cpp.html#aafcda2db9237d5d60b08fb6c302362ff">eExpMax</a></div><div class="ttdeci">float * eExpMax</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00216">readInput.cpp:216</a></div></div>
<div class="ttc" id="read_input_8cpp_html_adf92ce38547577a99b68dfd3f07b7d5a"><div class="ttname"><a href="read_input_8cpp.html#adf92ce38547577a99b68dfd3f07b7d5a">rsd</a></div><div class="ttdeci">float * rsd</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00283">readInput.cpp:283</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a7f881b0651c79069a38dcd54f9e53c22"><div class="ttname"><a href="read_input_8cpp.html#a7f881b0651c79069a38dcd54f9e53c22">eLogMin</a></div><div class="ttdeci">float * eLogMin</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00207">readInput.cpp:207</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a764fda4f24066351261eb6f777d2ff6c"><div class="ttname"><a href="read_input_8cpp.html#a764fda4f24066351261eb6f777d2ff6c">removeFracturesLessThan</a></div><div class="ttdeci">float removeFracturesLessThan</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00260">readInput.cpp:260</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a903896dcf39ee23cbea885abd3bc926d"><div class="ttname"><a href="read_input_8cpp.html#a903896dcf39ee23cbea885abd3bc926d">constantPermeability</a></div><div class="ttdeci">double constantPermeability</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00432">readInput.cpp:432</a></div></div>
<div class="ttc" id="read_input_8cpp_html_aae080e946350166ba15f5dc2568b3dcc"><div class="ttname"><a href="read_input_8cpp.html#aae080e946350166ba15f5dc2568b3dcc">ephi</a></div><div class="ttdeci">float * ephi</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00174">readInput.cpp:174</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a667cefc35ba997c50191b0214e91b097"><div class="ttname"><a href="read_input_8cpp.html#a667cefc35ba997c50191b0214e91b097">etheta</a></div><div class="ttdeci">float * etheta</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00168">readInput.cpp:168</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a5cd62663cb067d79183d8de4dd0224db"><div class="ttname"><a href="read_input_8cpp.html#a5cd62663cb067d79183d8de4dd0224db">domainSize</a></div><div class="ttdeci">double domainSize[3]</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00018">readInput.cpp:18</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a0b60c5d860054f964ec05348b186e86e"><div class="ttname"><a href="read_input_8cpp.html#a0b60c5d860054f964ec05348b186e86e">stdAperture</a></div><div class="ttdeci">float stdAperture</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00405">readInput.cpp:405</a></div></div>
<div class="ttc" id="read_input_8cpp_html_a103ff44476536ae22f050772fe20bbfe"><div class="ttname"><a href="read_input_8cpp.html#a103ff44476536ae22f050772fe20bbfe">eExpMin</a></div><div class="ttdeci">float * eExpMin</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00213">readInput.cpp:213</a></div></div>
<div class="ttc" id="read_input_functions_8cpp_html_a93d02ef3164ffc7b03270f3c0e1736aa"><div class="ttname"><a href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a></div><div class="ttdeci">void checkIfOpen(std::ifstream &amp;stream, std::string fileName)</div><div class="ttdef"><b>Definition:</b> <a href="read_input_functions_8cpp_source.html#l00035">readInputFunctions.cpp:35</a></div></div>
<div class="ttc" id="read_input_functions_8h_html"><div class="ttname"><a href="read_input_functions_8h.html">readInputFunctions.h</a></div></div>
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