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<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Home · PhyloDiamond.jl</title><script data-outdated-warner src="assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.045/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.4/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.4/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.4/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.13.24/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL="."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="assets/documenter.js"></script><script src="siteinfo.js"></script><script src="../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="assets/themeswap.js"></script></head><body><div id="documenter"><nav class="docs-sidebar"><a class="docs-logo" href="index.html"><img src="assets/logo.png" alt="PhyloDiamond.jl logo"/></a><div class="docs-package-name"><span class="docs-autofit"><a href="index.html">PhyloDiamond.jl</a></span></div><form class="docs-search" action="search.html"><input class="docs-search-query" id="documenter-search-query" name="q" type="text" placeholder="Search docs"/></form><ul class="docs-menu"><li class="is-active"><a class="tocitem" href="index.html">Home</a><ul class="internal"><li><a class="tocitem" href="#Citation"><span>Citation</span></a></li></ul></li><li><span class="tocitem">Manual</span><ul><li><a class="tocitem" href="man/installation.html">Installation</a></li><li><a class="tocitem" href="man/implementation.html">Implementation</a></li></ul></li><li><span class="tocitem">Library</span><ul><li><a class="tocitem" href="lib/public_methods.html">Public Methods</a></li></ul></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href="index.html">Home</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href="index.html">Home</a></li></ul></nav><div class="docs-right"><a class="docs-edit-link" href="https://github.com/solislemuslab/phylo-invariants/blob/master/docs/src/index.md" title="Edit on GitHub"><span class="docs-icon fab"></span><span class="docs-label is-hidden-touch">Edit on GitHub</span></a><a class="docs-settings-button fas fa-cog" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-sidebar-button fa fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a></div></header><article class="content" id="documenter-page"><h1 id="PhyloDiamond.jl"><a class="docs-heading-anchor" href="#PhyloDiamond.jl">PhyloDiamond.jl</a><a id="PhyloDiamond.jl-1"></a><a class="docs-heading-anchor-permalink" href="#PhyloDiamond.jl" title="Permalink"></a></h1><p><a href="https://github.com/solislemuslab/PhyloDiamond.jl">PhyloDiamond.jl</a> is a <a href="http://julialang.org/">Julia</a> package to infer 4-node hybridization cycles in phylogenetic networks using algebraic invariants. The inference algorithm is described in the paper below.</p><h2 id="Citation"><a class="docs-heading-anchor" href="#Citation">Citation</a><a id="Citation-1"></a><a class="docs-heading-anchor-permalink" href="#Citation" title="Permalink"></a></h2><p>If you use <code>PhyloDiamond.jl</code> in your work, we kindly ask that you cite the following paper: </p><ul><li>Wu, Z., Solís-Lemus, C. (2022). Ultrafast learning of 4-node hybridization cycles in phylogenetic networks using algebraic invariants. <a href="https://arxiv.org/abs/2211.16647">arXiv:2211.16647</a>.</li></ul></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="man/installation.html">Installation »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 0.27.24 on <span class="colophon-date" title="Monday 13 March 2023 21:25">Monday 13 March 2023</span>. 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