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<div class="title">output.cpp</div>  </div>
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<a href="output_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="output_8h.html">output.h</a>&quot;</span></div><div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#include &lt;fstream&gt;</span></div><div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="preprocessor">#include &lt;stdlib.h&gt;</span> <span class="comment">// remove dir</span></div><div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &lt;algorithm&gt;</span></div><div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="input_8h.html">input.h</a>&quot;</span></div><div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="preprocessor">#include &lt;iostream&gt;</span></div><div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="structures_8h.html">structures.h</a>&quot;</span></div><div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="vector_functions_8h.html">vectorFunctions.h</a>&quot;</span></div><div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="insert_shape_8h.html">insertShape.h</a>&quot;</span> <span class="comment">// getFamilyNum()</span></div><div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="math_functions_8h.html">mathFunctions.h</a>&quot;</span></div><div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="generating_points_8h.html">generatingPoints.h</a>&quot;</span></div><div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="computational_geometry_8h.html">computationalGeometry.h</a>&quot;</span> <span class="comment">// Rotation matrix functions</span></div><div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="preprocessor">#include &lt;cmath&gt;</span></div><div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="preprocessor">#include &lt;sys/stat.h&gt;</span> <span class="comment">// Checking if output directory exists DIR_exists(dir)</span></div><div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="preprocessor">#include &lt;iomanip&gt;</span> <span class="comment">// std::setprecision()</span></div><div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="preprocessor">#include &lt;sys/stat.h&gt;</span> <span class="comment">// mkdir system call </span></div><div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="read_input_functions_8h.html">readInputFunctions.h</a>&quot;</span> <span class="comment">// error check for file open checkIfOpen()</span></div><div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;</div><div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="comment">//NOTE: do not use std::endl for new lines when writing to files. This will flush the output buffer. Use &#39;\n&#39;</span></div><div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;</div><div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;<span class="comment">/* void writeOutput() ************************************************************************/</span></div><div class="line"><a name="l00031"></a><span class="lineno"><a class="line" href="output_8h.html#ad84815b625587d2194321694a13f2477">   31</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#ad84815b625587d2194321694a13f2477">writeOutput</a>(<span class="keywordtype">char</span>* outputFolder, std::vector&lt;Poly&gt; &amp;acceptedPoly, std::vector&lt;IntPoints&gt; &amp;intPts, std::vector&lt;Point&gt; &amp;triplePoints, <span class="keyword">struct</span> <a class="code" href="struct_stats.html">Stats</a> &amp;pstats, std::vector&lt;unsigned int&gt; &amp;finalFractures, std::vector&lt;Shape&gt; &amp;shapeFamilies) {</div><div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;    </div><div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;    std::string output = outputFolder;</div><div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;    </div><div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;    <span class="comment">// Define Output Files:</span></div><div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;    std::string permOutputFile = output + <span class="stringliteral">&quot;/perm.dat&quot;</span>;</div><div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;    std::string <a class="code" href="input_8h.html#abc39a0cf64740d1080e5c9867191fa0e">aperture</a> = output + <span class="stringliteral">&quot;/aperture.dat&quot;</span>;</div><div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;    std::string intersectionFolder = output + <span class="stringliteral">&quot;/intersections&quot;</span>;</div><div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;    std::string radiiFolder = output + <span class="stringliteral">&quot;/radii/&quot;</span>; </div><div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;</div><div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;    <span class="comment">// Create intersections folder</span></div><div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;    <span class="comment">//makeDIR(intersectionFolder.c_str()); </span></div><div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;    <span class="comment">// Write intersection files (must be first file written, rotates polys to x-y plane)</span></div><div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;    <a class="code" href="output_8cpp.html#a28522d95b2cb41e475acf0136cc6a58e">writeIntersectionFiles</a>(finalFractures, acceptedPoly, intPts, triplePoints, intersectionFolder, pstats);</div><div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;    <span class="comment">// Write polys.inp</span></div><div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;    <a class="code" href="output_8cpp.html#aa1811bfba84e52254a8193a2fd9572b9">writePolysInp</a>(finalFractures, acceptedPoly, output);</div><div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;    <span class="comment">// Write params.txt</span></div><div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;    <a class="code" href="output_8cpp.html#a19629adecaacde4ddd07e983743802d2">writeParamsFile</a>(finalFractures, acceptedPoly, shapeFamilies, pstats, triplePoints, output);</div><div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;    <span class="comment">// Write aperture file</span></div><div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;    <a class="code" href="output_8cpp.html#a79e5f6f87216f01ab2c692e4be77802b">writeApertureFile</a>(finalFractures, acceptedPoly, output);</div><div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;    <span class="comment">// Write permability file</span></div><div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;    <a class="code" href="output_8cpp.html#a28380919d0aa1bbe73f57221118b948b">writePermFile</a>(finalFractures, acceptedPoly, output);</div><div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;    <span class="comment">// Write radii file</span></div><div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160;    <a class="code" href="output_8cpp.html#a5a3e3e3566cdf38d5e17abbc9c5f8d7d">writeRadiiFile</a>(finalFractures, acceptedPoly, output);</div><div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;    <span class="comment">// Write rejection stats file</span></div><div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;    <a class="code" href="output_8cpp.html#ae4eaf0ac5f6d6af694f8c276bfbcc8ac">writeRejectionStats</a>(pstats, output);</div><div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;    <span class="comment">// Write families to output Files</span></div><div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;    <a class="code" href="output_8cpp.html#a96b4cdfdb19e66e4996481c31f0e2ed4">writeShapeFams</a>(shapeFamilies, output);</div><div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;    <span class="comment">// Write fracture translations file</span></div><div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;    <a class="code" href="output_8cpp.html#abbff4246d763bc6aaa86ce9baa5f1de9">writeFractureTranslations</a>(finalFractures, acceptedPoly, output);</div><div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;    <span class="comment">// Write fracture connectivity (edge graph) file</span></div><div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;    <a class="code" href="output_8cpp.html#a65cbcde44e07cd886ca36467e8fd1bba">writeConnectivity</a>(finalFractures, acceptedPoly, intPts, output);</div><div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;    <span class="comment">// Write rotation data</span></div><div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;    <a class="code" href="output_8cpp.html#a57b8bb3d7eca7bea96500d210f45bee4">writeRotationData</a>(acceptedPoly, finalFractures, shapeFamilies, output);</div><div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;    <span class="comment">// Write rejects per fracture insertion attempt data</span></div><div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;    <a class="code" href="output_8cpp.html#a8aa48d2a57afeb6e59069ac0a8a5f9cc">writeRejectsPerAttempt</a>(pstats, output);</div><div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;    <span class="comment">// Write all accepted radii, for Nataliia</span></div><div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;    <a class="code" href="output_8cpp.html#a631030ad68c4db16e85d6aaafa50f753">writeFinalPolyRadii</a>(finalFractures, acceptedPoly, output);</div><div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;</div><div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="input_8h.html#a66471dd0571be27dea62906d930ef883">outputAcceptedRadiiPerFamily</a>) {</div><div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;Writing Accepted Radii Files Per Family\n&quot;</span>;</div><div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;        <span class="comment">// Creates radii files per family, before isolated fracture removal.</span></div><div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;        <span class="keywordtype">int</span> size = shapeFamilies.size();</div><div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; size; i++) {</div><div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;           <a class="code" href="output_8cpp.html#a6923d93d3476402eb12320286998adb0">writeAllAcceptedRadii_OfFamily</a>(i, acceptedPoly, radiiFolder);</div><div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;        }</div><div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;</div><div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="input_8h.html#ab963e6ee0512d7651d002947e0bfd1df">userRectanglesOnOff</a>) {</div><div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;            <span class="comment">// Fractures are marked -2 for user rects</span></div><div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;            <a class="code" href="output_8cpp.html#a6923d93d3476402eb12320286998adb0">writeAllAcceptedRadii_OfFamily</a>(-2, acceptedPoly, radiiFolder);</div><div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;        }</div><div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;</div><div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="input_8h.html#af93cb3f9ec0bb2490e0c2219b15aa1cf">userEllipsesOnOff</a>) {</div><div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;            <span class="comment">// Fractures are marked -1 for user ellipses</span></div><div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;            <a class="code" href="output_8cpp.html#a6923d93d3476402eb12320286998adb0">writeAllAcceptedRadii_OfFamily</a>(-1, acceptedPoly, radiiFolder);</div><div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;        }</div><div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;    }</div><div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;</div><div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;</div><div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="input_8h.html#a1c0f1e135986f63c343fac357913481f">outputFinalRadiiPerFamily</a>) {</div><div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;        </div><div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;Writing Final Radii Files Per Family\n&quot;</span>;    </div><div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;    </div><div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;        <span class="keywordtype">int</span> size = shapeFamilies.size();</div><div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; size; i++) {</div><div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;           <a class="code" href="output_8cpp.html#a5ae0b1fd93e78fd4efc7031d70af5457">writeFinalRadii_OfFamily</a>(finalFractures, i, acceptedPoly, radiiFolder);</div><div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;        }</div><div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;</div><div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="input_8h.html#ab963e6ee0512d7651d002947e0bfd1df">userRectanglesOnOff</a>) { </div><div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;            <a class="code" href="output_8cpp.html#a5ae0b1fd93e78fd4efc7031d70af5457">writeFinalRadii_OfFamily</a>(finalFractures, -2, acceptedPoly, radiiFolder);</div><div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;        }</div><div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;</div><div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="input_8h.html#af93cb3f9ec0bb2490e0c2219b15aa1cf">userEllipsesOnOff</a>) {</div><div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;            <a class="code" href="output_8cpp.html#a5ae0b1fd93e78fd4efc7031d70af5457">writeFinalRadii_OfFamily</a>(finalFractures, -1, acceptedPoly, radiiFolder);</div><div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;        }</div><div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;    }</div><div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;</div><div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;    <span class="comment">// If triple intersections are on, write triple intersection points file</span></div><div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="input_8h.html#aa0b6ecd1182eec9769b157aa8387e32c">tripleIntersections</a>) {</div><div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;Writing Triple Intersection Points File\n&quot;</span>;</div><div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;        <a class="code" href="output_8cpp.html#a77e468c6337aff7763211d1dd37230bf">writeTriplePts</a>(triplePoints, finalFractures, acceptedPoly, intPts, output);</div><div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;    }</div><div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;</div><div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;} <span class="comment">// End writeOutput()</span></div><div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;</div><div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;</div><div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;<span class="comment">/*=================================   OUTPUT.CPP FUNCTIONS   ================================*/</span></div><div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;<span class="comment">/*===========================================================================================*/</span></div><div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;</div><div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;</div><div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;<span class="comment">/* void writePoints() ************************************************************************/</span></div><div class="line"><a name="l00133"></a><span class="lineno"><a class="line" href="output_8h.html#ac2cd20a288fc5b4e1d25bf9871f2cea4">  133</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#ac2cd20a288fc5b4e1d25bf9871f2cea4">writePoints</a>(std::ostream &amp;output, std::vector&lt;Point&gt; &amp;points, <span class="keywordtype">int</span> start, <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> &amp;count){</div><div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;    <span class="keywordtype">int</span> n=points.size();</div><div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = start; i &lt; n; i++) {</div><div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;        output &lt;&lt; std::setprecision(13) &lt;&lt; count &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; points[i].x </div><div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;               &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; points[i].y &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; points[i].z&lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;        count++;</div><div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;    }</div><div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;}</div><div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;</div><div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;<span class="comment">/* finishWritingIntFile() ********************************************************************/</span></div><div class="line"><a name="l00152"></a><span class="lineno"><a class="line" href="output_8h.html#a4ed77d5751dbcd90abcdaeccd521c6e8">  152</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a4ed77d5751dbcd90abcdaeccd521c6e8">finishWritingIntFile</a>(std::ostream &amp;fractIntFile, <span class="keywordtype">int</span> fract1, <span class="keywordtype">int</span> numPoints, <span class="keywordtype">int</span> numIntersections, </div><div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160;     std::vector&lt;unsigned int&gt; &amp;intStart, std::vector&lt;unsigned int&gt; &amp;intersectingFractures){</div><div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;    </div><div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;    <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> count=1;</div><div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;    <span class="keywordtype">int</span> idx = 0;</div><div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;    </div><div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;    <span class="comment">// Lines</span></div><div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i&lt;numPoints-numIntersections; i++){</div><div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;        <span class="keywordflow">if</span>(intStart[idx] == count+1){</div><div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;            count++;</div><div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;            idx++;</div><div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;        }</div><div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;        fractIntFile&lt;&lt; i+1 &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt;fract1&lt;&lt; <span class="stringliteral">&quot; line &quot;</span> &lt;&lt;count&lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt;count+1&lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;        count++;</div><div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;    }    </div><div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;    </div><div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160;    fractIntFile&lt;&lt; <span class="stringliteral">&quot;2 1 1\n&quot;</span>;</div><div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;    fractIntFile&lt;&lt; <span class="stringliteral">&quot;a_b, integer\n&quot;</span>;</div><div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;    fractIntFile&lt;&lt; <span class="stringliteral">&quot;b_a, integer\n&quot;</span>;</div><div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;    idx=0;</div><div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i=0; i&lt;numPoints; i++){</div><div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;        <span class="keywordflow">if</span>(intStart[idx] == (<span class="keywordtype">unsigned</span>) i+1){</div><div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;            idx++;</div><div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;        }</div><div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;    fractIntFile&lt;&lt;i+1&lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt;fract1&lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt;intersectingFractures[idx]&lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;    }</div><div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;    </div><div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;    <span class="comment">// Move to header postion</span></div><div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;    fractIntFile.seekp(0);</div><div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;    fractIntFile&lt;&lt;numPoints&lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt;numPoints - numIntersections&lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt;2&lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; <span class="stringliteral">&quot;0 0&quot;</span>;</div><div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;}</div><div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;</div><div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160;</div><div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;</div><div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160;<span class="comment">/* bool DIR_exists() *************************************************************************/</span></div><div class="line"><a name="l00193"></a><span class="lineno"><a class="line" href="output_8h.html#ac931ce8a096fcb6942ed0b2794dd7acc">  193</a></span>&#160;<span class="keywordtype">bool</span> <a class="code" href="output_8cpp.html#ac931ce8a096fcb6942ed0b2794dd7acc">DIR_exists</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *path){ </div><div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;    <span class="keyword">struct </span>stat sb;</div><div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;</div><div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;    <span class="keywordflow">if</span> ((stat(path, &amp;sb) == 0 &amp;&amp; S_ISDIR(sb.st_mode))) {</div><div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;        <span class="keywordflow">return</span> 1;</div><div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160;    }</div><div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160;<span class="keywordflow">return</span> 0;</div><div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;}</div><div class="line"><a name="l00201"></a><span class="lineno">  201</span>&#160;</div><div class="line"><a name="l00202"></a><span class="lineno">  202</span>&#160;</div><div class="line"><a name="l00203"></a><span class="lineno">  203</span>&#160;<span class="comment">/* adjustIntFractIds() **********************************************************************/</span></div><div class="line"><a name="l00218"></a><span class="lineno"><a class="line" href="output_8h.html#a08e7277a09a396170a11d74b1dea4a8f">  218</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a08e7277a09a396170a11d74b1dea4a8f">adjustIntFractIDs</a>(std::vector&lt;unsigned int&gt; &amp;finalFractures, std::vector&lt;Poly&gt; &amp;allPolys, std::vector&lt;IntPoints&gt; &amp;intPts){</div><div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160;    <span class="comment">//go through all final fractures</span></div><div class="line"><a name="l00220"></a><span class="lineno">  220</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i &lt; finalFractures.size(); i++){</div><div class="line"><a name="l00221"></a><span class="lineno">  221</span>&#160;        <span class="comment">//go through each final fractures intersections</span></div><div class="line"><a name="l00222"></a><span class="lineno">  222</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> j = 0; j &lt; allPolys[finalFractures[i]].intersectionIndex.size(); j++){</div><div class="line"><a name="l00223"></a><span class="lineno">  223</span>&#160;            <span class="comment">//change matching fracture numbers to new number (order of finalFractures list) for output</span></div><div class="line"><a name="l00224"></a><span class="lineno">  224</span>&#160;            <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> intIdx = allPolys[finalFractures[i]].intersectionIndex[j];</div><div class="line"><a name="l00225"></a><span class="lineno">  225</span>&#160;            <span class="keywordflow">if</span> (intPts[intIdx].fract1 ==  finalFractures[i]){</div><div class="line"><a name="l00226"></a><span class="lineno">  226</span>&#160;                intPts[intIdx].fract1 =  -( (<span class="keywordtype">long</span> int) i+1);</div><div class="line"><a name="l00227"></a><span class="lineno">  227</span>&#160;            }</div><div class="line"><a name="l00228"></a><span class="lineno">  228</span>&#160;            <span class="keywordflow">else</span> <span class="keywordflow">if</span> (intPts[intIdx].fract2 == finalFractures[i]){</div><div class="line"><a name="l00229"></a><span class="lineno">  229</span>&#160;                intPts[intIdx].fract2 = -( (<span class="keywordtype">long</span> int) i+1);</div><div class="line"><a name="l00230"></a><span class="lineno">  230</span>&#160;            }</div><div class="line"><a name="l00231"></a><span class="lineno">  231</span>&#160;        }</div><div class="line"><a name="l00232"></a><span class="lineno">  232</span>&#160;    }</div><div class="line"><a name="l00233"></a><span class="lineno">  233</span>&#160;}</div><div class="line"><a name="l00234"></a><span class="lineno">  234</span>&#160;</div><div class="line"><a name="l00235"></a><span class="lineno">  235</span>&#160;</div><div class="line"><a name="l00236"></a><span class="lineno">  236</span>&#160;<span class="comment">/* writeIntersectionFiles() ******************************************************************/</span></div><div class="line"><a name="l00248"></a><span class="lineno"><a class="line" href="output_8h.html#a28522d95b2cb41e475acf0136cc6a58e">  248</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a28522d95b2cb41e475acf0136cc6a58e">writeIntersectionFiles</a>(std::vector&lt;unsigned int&gt; &amp;finalFractures, std::vector&lt;Poly&gt; &amp;acceptedPoly, std::vector&lt;IntPoints&gt; &amp;intPts, std::vector&lt;Point&gt; &amp;triplePoints, std::string intersectionFolder, <span class="keyword">struct</span> <a class="code" href="struct_stats.html">Stats</a> &amp;pstats) { </div><div class="line"><a name="l00249"></a><span class="lineno">  249</span>&#160;    </div><div class="line"><a name="l00250"></a><span class="lineno">  250</span>&#160;    <a class="code" href="struct_point.html">Point</a> tempPoint1, tempPoint2; <span class="comment">// Keeps track of current un-rotated points we are working with</span></div><div class="line"><a name="l00251"></a><span class="lineno">  251</span>&#160;</div><div class="line"><a name="l00252"></a><span class="lineno">  252</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;\nWriting Intersection Files\n&quot;</span>;    </div><div class="line"><a name="l00253"></a><span class="lineno">  253</span>&#160;</div><div class="line"><a name="l00254"></a><span class="lineno">  254</span>&#160;    <a class="code" href="output_8cpp.html#a08e7277a09a396170a11d74b1dea4a8f">adjustIntFractIDs</a>(finalFractures,acceptedPoly, intPts);</div><div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160; </div><div class="line"><a name="l00256"></a><span class="lineno">  256</span>&#160;    std::ofstream fractIntFile; </div><div class="line"><a name="l00257"></a><span class="lineno">  257</span>&#160;</div><div class="line"><a name="l00258"></a><span class="lineno">  258</span>&#160;    <span class="comment">// Go through finalFractures. Rotate poly, intersections, and triple intersection points </span></div><div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160;    <span class="comment">// to XY plane. Discretize and write to file</span></div><div class="line"><a name="l00260"></a><span class="lineno">  260</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i &lt; finalFractures.size(); i++){</div><div class="line"><a name="l00261"></a><span class="lineno">  261</span>&#160;        </div><div class="line"><a name="l00262"></a><span class="lineno">  262</span>&#160;        <span class="comment">// Starting positions for each intersection. Lets us know how to make the line connections</span></div><div class="line"><a name="l00263"></a><span class="lineno">  263</span>&#160;        std::vector&lt;unsigned int&gt; intStart;         </div><div class="line"><a name="l00264"></a><span class="lineno">  264</span>&#160;        <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> count = 1;</div><div class="line"><a name="l00265"></a><span class="lineno">  265</span>&#160;</div><div class="line"><a name="l00266"></a><span class="lineno">  266</span>&#160;        <span class="comment">// Counter for intersection header  number of points</span></div><div class="line"><a name="l00267"></a><span class="lineno">  267</span>&#160;        <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> numIntPts = 0; </div><div class="line"><a name="l00268"></a><span class="lineno">  268</span>&#160;        <span class="comment">// Used in wiring which nodes belong to which two fractures in finishWritingOutput()</span></div><div class="line"><a name="l00269"></a><span class="lineno">  269</span>&#160;        std::vector&lt;unsigned int&gt; intersectingFractures; </div><div class="line"><a name="l00270"></a><span class="lineno">  270</span>&#160;    </div><div class="line"><a name="l00271"></a><span class="lineno">  271</span>&#160;        <span class="comment">// Make new intersection file in intersections folder</span></div><div class="line"><a name="l00272"></a><span class="lineno">  272</span>&#160;        std::string file = intersectionFolder + <span class="stringliteral">&quot;/intersections_&quot;</span> + std::to_string(i+1) + <span class="stringliteral">&quot;.inp&quot;</span>;</div><div class="line"><a name="l00273"></a><span class="lineno">  273</span>&#160;        fractIntFile.open(file.c_str(), std::ofstream::out | std::ofstream::trunc);</div><div class="line"><a name="l00274"></a><span class="lineno">  274</span>&#160;</div><div class="line"><a name="l00275"></a><span class="lineno">  275</span>&#160;        <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(fractIntFile, file);</div><div class="line"><a name="l00276"></a><span class="lineno">  276</span>&#160;</div><div class="line"><a name="l00277"></a><span class="lineno">  277</span>&#160;        <span class="comment">// Buffer first line to leave space to write header  </span></div><div class="line"><a name="l00278"></a><span class="lineno">  278</span>&#160;        fractIntFile&lt;&lt; <span class="stringliteral">&quot;                                                               \n&quot;</span>;    </div><div class="line"><a name="l00279"></a><span class="lineno">  279</span>&#160;                                    </div><div class="line"><a name="l00280"></a><span class="lineno">  280</span>&#160;        <span class="comment">// Go through each final fracture&#39;s intersections and write to output</span></div><div class="line"><a name="l00281"></a><span class="lineno">  281</span>&#160;        <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> size = acceptedPoly[finalFractures[i]].intersectionIndex.size();</div><div class="line"><a name="l00282"></a><span class="lineno">  282</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> j = 0; j &lt; size; j++){        </div><div class="line"><a name="l00283"></a><span class="lineno">  283</span>&#160;</div><div class="line"><a name="l00284"></a><span class="lineno">  284</span>&#160;            <span class="comment">// tempTripPts holds rotated triple points for an intersection. Triple pts must be rotated 3 different </span></div><div class="line"><a name="l00285"></a><span class="lineno">  285</span>&#160;            <span class="comment">// ways so we cannot change the original data </span></div><div class="line"><a name="l00286"></a><span class="lineno">  286</span>&#160;            std::vector&lt;Point&gt; tempTripPts; </div><div class="line"><a name="l00287"></a><span class="lineno">  287</span>&#160;</div><div class="line"><a name="l00288"></a><span class="lineno">  288</span>&#160;            <span class="comment">// Used to measure current length before rotation (used to calculate number of points </span></div><div class="line"><a name="l00289"></a><span class="lineno">  289</span>&#160;            <span class="comment">// to discretize) based on original intersection. This fixes any precision errors we </span></div><div class="line"><a name="l00290"></a><span class="lineno">  290</span>&#160;            <span class="comment">// when calculating length after rotation, both rotations for the same intersection will</span></div><div class="line"><a name="l00291"></a><span class="lineno">  291</span>&#160;            <span class="comment">// always have the same step size and same number of discretized points.</span></div><div class="line"><a name="l00292"></a><span class="lineno">  292</span>&#160;            <span class="keywordtype">double</span> curLength = 0;</div><div class="line"><a name="l00293"></a><span class="lineno">  293</span>&#160;        </div><div class="line"><a name="l00294"></a><span class="lineno">  294</span>&#160;            <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> polyIntIdx = acceptedPoly[finalFractures[i]].intersectionIndex[j];</div><div class="line"><a name="l00295"></a><span class="lineno">  295</span>&#160;                        </div><div class="line"><a name="l00296"></a><span class="lineno">  296</span>&#160;            <span class="comment">// Similarly to above, the intersection must be rotated two different ways, </span></div><div class="line"><a name="l00297"></a><span class="lineno">  297</span>&#160;            <span class="comment">// one for each intersecting poly. We can&#39;t change the original data so we must use temp data    </span></div><div class="line"><a name="l00298"></a><span class="lineno">  298</span>&#160;            <a class="code" href="struct_int_points.html">IntPoints</a> tempIntersection = <a class="code" href="computational_geometry_8cpp.html#a06628fbaa79aad7eec7a74c5341e77bd">polyAndIntersection_RotationToXY</a>(intPts[polyIntIdx], </div><div class="line"><a name="l00299"></a><span class="lineno">  299</span>&#160;                                         acceptedPoly[finalFractures[i]], triplePoints, tempTripPts);</div><div class="line"><a name="l00300"></a><span class="lineno">  300</span>&#160;            <span class="comment">// poly and intersection now rotated</span></div><div class="line"><a name="l00301"></a><span class="lineno">  301</span>&#160;        </div><div class="line"><a name="l00302"></a><span class="lineno">  302</span>&#160;            <span class="keywordtype">int</span> triplePtsSize = tempTripPts.size();</div><div class="line"><a name="l00303"></a><span class="lineno">  303</span>&#160;                </div><div class="line"><a name="l00304"></a><span class="lineno">  304</span>&#160;            <span class="comment">// fracture 1 is i</span></div><div class="line"><a name="l00305"></a><span class="lineno">  305</span>&#160;            <span class="comment">// fracture 2 is the other intersecting fracture</span></div><div class="line"><a name="l00306"></a><span class="lineno">  306</span>&#160;            <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> fract2;</div><div class="line"><a name="l00307"></a><span class="lineno">  307</span>&#160;            <span class="keywordflow">if</span> (intPts[polyIntIdx].fract1 == -(i+1)){</div><div class="line"><a name="l00308"></a><span class="lineno">  308</span>&#160;                fract2 = -intPts[polyIntIdx].fract2;</div><div class="line"><a name="l00309"></a><span class="lineno">  309</span>&#160;                intersectingFractures.push_back(fract2);    </div><div class="line"><a name="l00310"></a><span class="lineno">  310</span>&#160;            }</div><div class="line"><a name="l00311"></a><span class="lineno">  311</span>&#160;            <span class="keywordflow">else</span> {</div><div class="line"><a name="l00312"></a><span class="lineno">  312</span>&#160;                fract2 = -intPts[polyIntIdx].fract1;</div><div class="line"><a name="l00313"></a><span class="lineno">  313</span>&#160;                intersectingFractures.push_back(fract2);</div><div class="line"><a name="l00314"></a><span class="lineno">  314</span>&#160;            }</div><div class="line"><a name="l00315"></a><span class="lineno">  315</span>&#160;            <span class="comment">// If triple points exist on intersection, discretize from endpoint to closest triple point,</span></div><div class="line"><a name="l00316"></a><span class="lineno">  316</span>&#160;            <span class="comment">// from triple to next triple point, and finally to other end point</span></div><div class="line"><a name="l00317"></a><span class="lineno">  317</span>&#160;            <span class="keywordflow">if</span> (triplePtsSize != 0) {</div><div class="line"><a name="l00318"></a><span class="lineno">  318</span>&#160;                </div><div class="line"><a name="l00319"></a><span class="lineno">  319</span>&#160;                <span class="comment">// Keep track of number of triple points which will be in the </span></div><div class="line"><a name="l00320"></a><span class="lineno">  320</span>&#160;                <span class="comment">// DFN (this is after isolated fracture removal)</span></div><div class="line"><a name="l00321"></a><span class="lineno">  321</span>&#160;                <span class="comment">// NOTE: This will need to be divided by six to get correct value. </span></div><div class="line"><a name="l00322"></a><span class="lineno">  322</span>&#160;                <span class="comment">// Division by six was determined through testing.</span></div><div class="line"><a name="l00323"></a><span class="lineno">  323</span>&#160;                pstats.<a class="code" href="struct_stats.html#a6d521913f1a280406a6536cb632c4356">tripleNodeCount</a> += triplePtsSize;</div><div class="line"><a name="l00324"></a><span class="lineno">  324</span>&#160;                 </div><div class="line"><a name="l00325"></a><span class="lineno">  325</span>&#160;                <span class="comment">// Order the triple points by distances to know to discretize from point to next closest point</span></div><div class="line"><a name="l00326"></a><span class="lineno">  326</span>&#160;                <span class="keywordtype">double</span> *distances = <span class="keyword">new</span> <span class="keywordtype">double</span>[triplePtsSize]; </div><div class="line"><a name="l00327"></a><span class="lineno">  327</span>&#160;            </div><div class="line"><a name="l00328"></a><span class="lineno">  328</span>&#160;                <span class="keywordtype">double</span> pt1[3] = {tempIntersection.<a class="code" href="struct_int_points.html#a327ea7de5bfa98095a81d4c5709b5859">x1</a>, tempIntersection.<a class="code" href="struct_int_points.html#af2d7aa1594ac5c1a10de6bef0a5bee49">y1</a>, tempIntersection.<a class="code" href="struct_int_points.html#aabd621fc15cbe6fd9cd8343b020d292a">z1</a>};</div><div class="line"><a name="l00329"></a><span class="lineno">  329</span>&#160;                tempPoint1.<a class="code" href="struct_point.html#ab99c56589bc8ad5fa5071387110a5bc7">x</a> = intPts[polyIntIdx].x1;</div><div class="line"><a name="l00330"></a><span class="lineno">  330</span>&#160;                tempPoint1.<a class="code" href="struct_point.html#afa38be143ae800e6ad69ce8ed4df62d8">y</a> = intPts[polyIntIdx].y1;</div><div class="line"><a name="l00331"></a><span class="lineno">  331</span>&#160;                tempPoint1.<a class="code" href="struct_point.html#a05ba3b1dfcb19430582ae953cbbfbded">z</a> = intPts[polyIntIdx].z1;</div><div class="line"><a name="l00332"></a><span class="lineno">  332</span>&#160;                <span class="comment">// Create array of distances first end point to triple points</span></div><div class="line"><a name="l00333"></a><span class="lineno">  333</span>&#160;                <span class="keywordflow">for</span> (<span class="keywordtype">int</span> k = 0; k &lt; triplePtsSize; k++) { <span class="comment">//loop through triple points on  intersection i</span></div><div class="line"><a name="l00334"></a><span class="lineno">  334</span>&#160;                    <span class="keywordtype">double</span> point[3] = {tempTripPts[k].x, tempTripPts[k].y, tempTripPts[k].z};<span class="comment">//triple pt</span></div><div class="line"><a name="l00335"></a><span class="lineno">  335</span>&#160;                    distances[k] = <a class="code" href="vector_functions_8cpp.html#af04ebdcbe44a303101290e88a5971c71">euclideanDistance</a>(pt1, point);<span class="comment">//create array of distances </span></div><div class="line"><a name="l00336"></a><span class="lineno">  336</span>&#160;                }</div><div class="line"><a name="l00337"></a><span class="lineno">  337</span>&#160;        </div><div class="line"><a name="l00338"></a><span class="lineno">  338</span>&#160;                <span class="comment">// Order the indices of the distances array shortest to largest distance</span></div><div class="line"><a name="l00339"></a><span class="lineno">  339</span>&#160;                <span class="comment">// this lets us know which point to discritize to next</span></div><div class="line"><a name="l00340"></a><span class="lineno">  340</span>&#160;                <span class="keywordtype">int</span> *s = <a class="code" href="math_functions_8cpp.html#a50249713d75d2446b44572f47cc0c560">sortedIndex</a>(distances, triplePtsSize);</div><div class="line"><a name="l00341"></a><span class="lineno">  341</span>&#160;            </div><div class="line"><a name="l00342"></a><span class="lineno">  342</span>&#160;                <span class="comment">// Discretize from end point1 to first triple pt</span></div><div class="line"><a name="l00343"></a><span class="lineno">  343</span>&#160;                <span class="comment">// pt1 already = enpoint1</span></div><div class="line"><a name="l00344"></a><span class="lineno">  344</span>&#160;                <span class="keywordtype">double</span> pt2[3] = {tempTripPts[s[0]].x, tempTripPts[s[0]].y, tempTripPts[s[0]].z};</div><div class="line"><a name="l00345"></a><span class="lineno">  345</span>&#160;                tempPoint2 = triplePoints[intPts[polyIntIdx].triplePointsIdx[s[0]]];</div><div class="line"><a name="l00346"></a><span class="lineno">  346</span>&#160;                curLength = <a class="code" href="vector_functions_8cpp.html#af04ebdcbe44a303101290e88a5971c71">euclideanDistance</a>(tempPoint1, tempPoint2);</div><div class="line"><a name="l00347"></a><span class="lineno">  347</span>&#160;                std::vector&lt;Point&gt; points = <a class="code" href="generating_points_8cpp.html#a22991db6b15a6147e875c27a84402d4c">discretizeLineOfIntersection</a>(pt1, pt2, curLength);</div><div class="line"><a name="l00348"></a><span class="lineno">  348</span>&#160;            </div><div class="line"><a name="l00349"></a><span class="lineno">  349</span>&#160;                <span class="comment">// Write points to file</span></div><div class="line"><a name="l00350"></a><span class="lineno">  350</span>&#160;                numIntPts += points.size();</div><div class="line"><a name="l00351"></a><span class="lineno">  351</span>&#160;                <a class="code" href="output_8cpp.html#ac2cd20a288fc5b4e1d25bf9871f2cea4">writePoints</a>(fractIntFile, points, 0, count);</div><div class="line"><a name="l00352"></a><span class="lineno">  352</span>&#160;</div><div class="line"><a name="l00353"></a><span class="lineno">  353</span>&#160;                <span class="comment">// If one trip pt, set up points to discretize from only triple pt to other end point</span></div><div class="line"><a name="l00354"></a><span class="lineno">  354</span>&#160;                <span class="keywordflow">if</span> (triplePtsSize == 1){ </div><div class="line"><a name="l00355"></a><span class="lineno">  355</span>&#160;                    pt1[0] = pt2[0];    pt1[1]=pt2[1];     pt1[2]=pt2[2];</div><div class="line"><a name="l00356"></a><span class="lineno">  356</span>&#160;                    pt2[0]=tempIntersection.<a class="code" href="struct_int_points.html#a03e871983902c49f6b18dd6d5e71a3f3">x2</a>;     pt2[1]=tempIntersection.<a class="code" href="struct_int_points.html#a899541257522a3746d9883113864a0c1">y2</a>;     pt2[2]=tempIntersection.<a class="code" href="struct_int_points.html#ad190f9e3aeb919a03d16baedbd108aa4">z2</a>; </div><div class="line"><a name="l00357"></a><span class="lineno">  357</span>&#160;</div><div class="line"><a name="l00358"></a><span class="lineno">  358</span>&#160;                    tempPoint1 = tempPoint2;</div><div class="line"><a name="l00359"></a><span class="lineno">  359</span>&#160;                    tempPoint2.<a class="code" href="struct_point.html#ab99c56589bc8ad5fa5071387110a5bc7">x</a> = intPts[polyIntIdx].x2;</div><div class="line"><a name="l00360"></a><span class="lineno">  360</span>&#160;                    tempPoint2.<a class="code" href="struct_point.html#afa38be143ae800e6ad69ce8ed4df62d8">y</a> = intPts[polyIntIdx].y2;</div><div class="line"><a name="l00361"></a><span class="lineno">  361</span>&#160;                    tempPoint2.<a class="code" href="struct_point.html#a05ba3b1dfcb19430582ae953cbbfbded">z</a> = intPts[polyIntIdx].z2;</div><div class="line"><a name="l00362"></a><span class="lineno">  362</span>&#160;                }</div><div class="line"><a name="l00363"></a><span class="lineno">  363</span>&#160;                <span class="keywordflow">else</span> { <span class="comment">// More than 1 triple point</span></div><div class="line"><a name="l00364"></a><span class="lineno">  364</span>&#160;                    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> jj=0; jj &lt; (triplePtsSize-1); jj++){</div><div class="line"><a name="l00365"></a><span class="lineno">  365</span>&#160;                    </div><div class="line"><a name="l00366"></a><span class="lineno">  366</span>&#160;                        pt1[0] = tempTripPts[s[jj]].x;   pt1[1]=tempTripPts[s[jj]].y; pt1[2]=tempTripPts[s[jj]].z;</div><div class="line"><a name="l00367"></a><span class="lineno">  367</span>&#160;                        pt2[0] = tempTripPts[s[jj+1]].x; pt2[1]=tempTripPts[s[jj+1]].y; pt2[2]=tempTripPts[s[jj+1]].z;</div><div class="line"><a name="l00368"></a><span class="lineno">  368</span>&#160;</div><div class="line"><a name="l00369"></a><span class="lineno">  369</span>&#160;                        tempPoint1 = triplePoints[intPts[polyIntIdx].triplePointsIdx[s[jj]]];</div><div class="line"><a name="l00370"></a><span class="lineno">  370</span>&#160;                        tempPoint2 = triplePoints[intPts[polyIntIdx].triplePointsIdx[s[jj+1]]];</div><div class="line"><a name="l00371"></a><span class="lineno">  371</span>&#160;                        curLength = <a class="code" href="vector_functions_8cpp.html#af04ebdcbe44a303101290e88a5971c71">euclideanDistance</a>(tempPoint1, tempPoint2);</div><div class="line"><a name="l00372"></a><span class="lineno">  372</span>&#160;                        points = <a class="code" href="generating_points_8cpp.html#a22991db6b15a6147e875c27a84402d4c">discretizeLineOfIntersection</a>(pt1, pt2, curLength);</div><div class="line"><a name="l00373"></a><span class="lineno">  373</span>&#160;                    </div><div class="line"><a name="l00374"></a><span class="lineno">  374</span>&#160;                        <span class="comment">// Write points for first fracture to file, save second set of points to temp</span></div><div class="line"><a name="l00375"></a><span class="lineno">  375</span>&#160;                        numIntPts += points.size()-1;</div><div class="line"><a name="l00376"></a><span class="lineno">  376</span>&#160;                        <a class="code" href="output_8cpp.html#ac2cd20a288fc5b4e1d25bf9871f2cea4">writePoints</a>(fractIntFile, points, 1, count);</div><div class="line"><a name="l00377"></a><span class="lineno">  377</span>&#160;                    }    </div><div class="line"><a name="l00378"></a><span class="lineno">  378</span>&#160;                    <span class="comment">// Set up points to go from last triple point to last endpoint</span></div><div class="line"><a name="l00379"></a><span class="lineno">  379</span>&#160;                    pt1[0]=pt2[0];     pt1[1]=pt2[1];     pt1[2]=pt2[2];</div><div class="line"><a name="l00380"></a><span class="lineno">  380</span>&#160;                    pt2[0]=tempIntersection.<a class="code" href="struct_int_points.html#a03e871983902c49f6b18dd6d5e71a3f3">x2</a>;     pt2[1]=tempIntersection.<a class="code" href="struct_int_points.html#a899541257522a3746d9883113864a0c1">y2</a>;     pt2[2]=tempIntersection.<a class="code" href="struct_int_points.html#ad190f9e3aeb919a03d16baedbd108aa4">z2</a>;</div><div class="line"><a name="l00381"></a><span class="lineno">  381</span>&#160;                    </div><div class="line"><a name="l00382"></a><span class="lineno">  382</span>&#160;                    tempPoint1 = tempPoint2;</div><div class="line"><a name="l00383"></a><span class="lineno">  383</span>&#160;                    tempPoint2.<a class="code" href="struct_point.html#ab99c56589bc8ad5fa5071387110a5bc7">x</a> = intPts[polyIntIdx].x2;</div><div class="line"><a name="l00384"></a><span class="lineno">  384</span>&#160;                    tempPoint2.<a class="code" href="struct_point.html#afa38be143ae800e6ad69ce8ed4df62d8">y</a> = intPts[polyIntIdx].y2;</div><div class="line"><a name="l00385"></a><span class="lineno">  385</span>&#160;                    tempPoint2.<a class="code" href="struct_point.html#a05ba3b1dfcb19430582ae953cbbfbded">z</a> = intPts[polyIntIdx].z2;</div><div class="line"><a name="l00386"></a><span class="lineno">  386</span>&#160;</div><div class="line"><a name="l00387"></a><span class="lineno">  387</span>&#160;                }</div><div class="line"><a name="l00388"></a><span class="lineno">  388</span>&#160;                curLength = <a class="code" href="vector_functions_8cpp.html#af04ebdcbe44a303101290e88a5971c71">euclideanDistance</a>(tempPoint1, tempPoint2);</div><div class="line"><a name="l00389"></a><span class="lineno">  389</span>&#160;                points = <a class="code" href="generating_points_8cpp.html#a22991db6b15a6147e875c27a84402d4c">discretizeLineOfIntersection</a>(pt1, pt2, curLength);</div><div class="line"><a name="l00390"></a><span class="lineno">  390</span>&#160;</div><div class="line"><a name="l00391"></a><span class="lineno">  391</span>&#160;                numIntPts += points.size()-1;</div><div class="line"><a name="l00392"></a><span class="lineno">  392</span>&#160;                <a class="code" href="output_8cpp.html#ac2cd20a288fc5b4e1d25bf9871f2cea4">writePoints</a>(fractIntFile, points, 1, count);</div><div class="line"><a name="l00393"></a><span class="lineno">  393</span>&#160;            </div><div class="line"><a name="l00394"></a><span class="lineno">  394</span>&#160;                <span class="keyword">delete</span>[] s; <span class="comment">// Need to delete these manually. created with new[]</span></div><div class="line"><a name="l00395"></a><span class="lineno">  395</span>&#160; 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               tempPoint1.<a class="code" href="struct_point.html#ab99c56589bc8ad5fa5071387110a5bc7">x</a> = intPts[polyIntIdx].x1;</div><div class="line"><a name="l00401"></a><span class="lineno">  401</span>&#160;                tempPoint1.<a class="code" href="struct_point.html#afa38be143ae800e6ad69ce8ed4df62d8">y</a> = intPts[polyIntIdx].y1;</div><div class="line"><a name="l00402"></a><span class="lineno">  402</span>&#160;                tempPoint1.<a class="code" href="struct_point.html#a05ba3b1dfcb19430582ae953cbbfbded">z</a> = intPts[polyIntIdx].z1;</div><div class="line"><a name="l00403"></a><span class="lineno">  403</span>&#160;</div><div class="line"><a name="l00404"></a><span class="lineno">  404</span>&#160;                tempPoint2.<a class="code" href="struct_point.html#ab99c56589bc8ad5fa5071387110a5bc7">x</a> = intPts[polyIntIdx].x2;</div><div class="line"><a name="l00405"></a><span class="lineno">  405</span>&#160;                tempPoint2.<a class="code" href="struct_point.html#afa38be143ae800e6ad69ce8ed4df62d8">y</a> = intPts[polyIntIdx].y2;</div><div class="line"><a name="l00406"></a><span class="lineno">  406</span>&#160;                tempPoint2.<a class="code" href="struct_point.html#a05ba3b1dfcb19430582ae953cbbfbded">z</a> = intPts[polyIntIdx].z2;</div><div class="line"><a name="l00407"></a><span class="lineno">  407</span>&#160;               </div><div class="line"><a name="l00408"></a><span class="lineno">  408</span>&#160;                curLength = <a class="code" href="vector_functions_8cpp.html#af04ebdcbe44a303101290e88a5971c71">euclideanDistance</a>(tempPoint1, tempPoint2);</div><div class="line"><a name="l00409"></a><span class="lineno">  409</span>&#160;                std::vector&lt;Point&gt; points = <a class="code" href="generating_points_8cpp.html#a22991db6b15a6147e875c27a84402d4c">discretizeLineOfIntersection</a>(pt1, pt2, curLength);</div><div class="line"><a name="l00410"></a><span class="lineno">  410</span>&#160;                numIntPts += points.size();</div><div class="line"><a name="l00411"></a><span class="lineno">  411</span>&#160;                <a class="code" href="output_8cpp.html#ac2cd20a288fc5b4e1d25bf9871f2cea4">writePoints</a>(fractIntFile, points, 0, count);</div><div class="line"><a name="l00412"></a><span class="lineno">  412</span>&#160;            }    </div><div class="line"><a name="l00413"></a><span class="lineno">  413</span>&#160;        </div><div class="line"><a name="l00414"></a><span class="lineno">  414</span>&#160;            intStart.push_back(count);</div><div class="line"><a name="l00415"></a><span class="lineno">  415</span>&#160;        } </div><div class="line"><a name="l00416"></a><span class="lineno">  416</span>&#160;        <span class="comment">// Done with fracture and intersections</span></div><div class="line"><a name="l00417"></a><span class="lineno">  417</span>&#160;</div><div class="line"><a name="l00418"></a><span class="lineno">  418</span>&#160;        pstats.<a class="code" href="struct_stats.html#a84c9fecbd7e80b7cf93b185952618062">intersectionNodeCount</a> += numIntPts;    </div><div class="line"><a name="l00419"></a><span class="lineno">  419</span>&#160;</div><div class="line"><a name="l00420"></a><span class="lineno">  420</span>&#160;            </div><div class="line"><a name="l00421"></a><span class="lineno">  421</span>&#160;        <span class="comment">// Write line connectivity and header</span></div><div class="line"><a name="l00422"></a><span class="lineno">  422</span>&#160;        <a class="code" href="output_8cpp.html#a4ed77d5751dbcd90abcdaeccd521c6e8">finishWritingIntFile</a>(fractIntFile, i+1, numIntPts, size, intStart, intersectingFractures);</div><div class="line"><a name="l00423"></a><span class="lineno">  423</span>&#160;        intersectingFractures.clear();</div><div class="line"><a name="l00424"></a><span class="lineno">  424</span>&#160;        intStart.clear();</div><div class="line"><a name="l00425"></a><span class="lineno">  425</span>&#160;        fractIntFile.close();</div><div class="line"><a name="l00426"></a><span class="lineno">  426</span>&#160;    }</div><div class="line"><a name="l00427"></a><span class="lineno">  427</span>&#160;</div><div class="line"><a name="l00428"></a><span class="lineno">  428</span>&#160;    <span class="comment">//Divide by 6 to remove the duplicate counts</span></div><div class="line"><a name="l00429"></a><span class="lineno">  429</span>&#160;    pstats.<a class="code" href="struct_stats.html#a6d521913f1a280406a6536cb632c4356">tripleNodeCount</a> /= 6;</div><div class="line"><a name="l00430"></a><span class="lineno">  430</span>&#160;}</div><div class="line"><a name="l00431"></a><span class="lineno">  431</span>&#160;</div><div class="line"><a name="l00432"></a><span class="lineno">  432</span>&#160;<span class="comment">/* rotateFractures() **************************************************************************/</span></div><div class="line"><a name="l00437"></a><span class="lineno"><a class="line" href="output_8h.html#a05f2f6fb056bf06f18530445383e53d1">  437</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a05f2f6fb056bf06f18530445383e53d1">rotateFractures</a>(std::vector&lt;unsigned int&gt; &amp;finalFractures, std::vector&lt;Poly&gt; &amp;acceptedPoly) {</div><div class="line"><a name="l00438"></a><span class="lineno">  438</span>&#160;   </div><div class="line"><a name="l00439"></a><span class="lineno">  439</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i &lt; finalFractures.size(); i++) {</div><div class="line"><a name="l00440"></a><span class="lineno">  440</span>&#160;            </div><div class="line"><a name="l00441"></a><span class="lineno">  441</span>&#160;        <span class="keywordflow">if</span> (acceptedPoly[finalFractures[i]].XYPlane == <span class="keyword">true</span>) {</div><div class="line"><a name="l00442"></a><span class="lineno">  442</span>&#160;            <span class="keywordflow">continue</span>; <span class="comment">// Go to next interation of loop</span></div><div class="line"><a name="l00443"></a><span class="lineno">  443</span>&#160;        }    </div><div class="line"><a name="l00444"></a><span class="lineno">  444</span>&#160;</div><div class="line"><a name="l00445"></a><span class="lineno">  445</span>&#160;        acceptedPoly[finalFractures[i]].XYPlane = <span class="keyword">true</span>;</div><div class="line"><a name="l00446"></a><span class="lineno">  446</span>&#160;</div><div class="line"><a name="l00447"></a><span class="lineno">  447</span>&#160;        <span class="keywordtype">double</span> normalB[3] = {0,0,1};</div><div class="line"><a name="l00448"></a><span class="lineno">  448</span>&#160;        <a class="code" href="computational_geometry_8cpp.html#af7f1ba8a57908229078780a2695e4e46">applyRotation3D</a>(acceptedPoly[finalFractures[i]], normalB); </div><div class="line"><a name="l00449"></a><span class="lineno">  449</span>&#160;    }</div><div class="line"><a name="l00450"></a><span class="lineno">  450</span>&#160;}</div><div class="line"><a name="l00451"></a><span class="lineno">  451</span>&#160;</div><div class="line"><a name="l00452"></a><span class="lineno">  452</span>&#160;<span class="comment">/* writePolysInp() ****************************************************************************/</span></div><div class="line"><a name="l00457"></a><span class="lineno"><a class="line" href="output_8h.html#a3f79a93fe75b7edc3e91f27db1eecebc">  457</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a3f79a93fe75b7edc3e91f27db1eecebc">writePolysInp_old</a>(std::vector&lt;unsigned int&gt; &amp;finalFractures, std::vector&lt;Poly&gt; &amp;acceptedPoly, std::string &amp;output){</div><div class="line"><a name="l00458"></a><span class="lineno">  458</span>&#160;</div><div class="line"><a name="l00459"></a><span class="lineno">  459</span>&#160;    std::ofstream polyOutput;</div><div class="line"><a name="l00460"></a><span class="lineno">  460</span>&#160;    std::string polyOutputFile = output+<span class="stringliteral">&quot;/polys.inp&quot;</span>;</div><div class="line"><a name="l00461"></a><span class="lineno">  461</span>&#160;    polyOutput.open(polyOutputFile.c_str(), std::ofstream::out | std::ofstream::trunc);</div><div class="line"><a name="l00462"></a><span class="lineno">  462</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(polyOutput, polyOutputFile);   </div><div class="line"><a name="l00463"></a><span class="lineno">  463</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;Writing &quot;</span> &lt;&lt; polyOutputFile &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00464"></a><span class="lineno">  464</span>&#160;</div><div class="line"><a name="l00465"></a><span class="lineno">  465</span>&#160;    <span class="keywordtype">unsigned</span> <span class="keywordtype">long</span> <span class="keywordtype">long</span> <span class="keywordtype">int</span> vertexCount = 0;</div><div class="line"><a name="l00466"></a><span class="lineno">  466</span>&#160;</div><div class="line"><a name="l00467"></a><span class="lineno">  467</span>&#160;    <span class="comment">//HEADER</span></div><div class="line"><a name="l00468"></a><span class="lineno">  468</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> j = 0; j &lt; finalFractures.size(); j++){ <span class="comment">// Count vertices</span></div><div class="line"><a name="l00469"></a><span class="lineno">  469</span>&#160;        vertexCount += acceptedPoly[finalFractures[j]].numberOfNodes;</div><div class="line"><a name="l00470"></a><span class="lineno">  470</span>&#160;    }</div><div class="line"><a name="l00471"></a><span class="lineno">  471</span>&#160;</div><div class="line"><a name="l00472"></a><span class="lineno">  472</span>&#160;    polyOutput &lt;&lt; vertexCount &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; vertexCount - finalFractures.size() &lt;&lt; <span class="stringliteral">&quot; 0&quot;</span> &lt;&lt; <span class="stringliteral">&quot; 0&quot;</span> &lt;&lt; <span class="stringliteral">&quot; 0&quot;</span> &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00473"></a><span class="lineno">  473</span>&#160;    </div><div class="line"><a name="l00474"></a><span class="lineno">  474</span>&#160;    <span class="keywordtype">int</span> count = 1;</div><div class="line"><a name="l00475"></a><span class="lineno">  475</span>&#160;    <span class="keywordtype">int</span> polyCount = finalFractures.size();</div><div class="line"><a name="l00476"></a><span class="lineno">  476</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> j = 0; j&lt;polyCount; j++){    </div><div class="line"><a name="l00477"></a><span class="lineno">  477</span>&#160;</div><div class="line"><a name="l00478"></a><span class="lineno">  478</span>&#160;        <span class="comment">// Write vertices    </span></div><div class="line"><a name="l00479"></a><span class="lineno">  479</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; acceptedPoly[finalFractures[j]].numberOfNodes; i++) {</div><div class="line"><a name="l00480"></a><span class="lineno">  480</span>&#160;                <span class="keywordtype">int</span> idx = i*3;        </div><div class="line"><a name="l00481"></a><span class="lineno">  481</span>&#160;                polyOutput &lt;&lt; std::setprecision(15) &lt;&lt; count &lt;&lt; <span class="stringliteral">&quot; &quot;</span> </div><div class="line"><a name="l00482"></a><span class="lineno">  482</span>&#160;                           &lt;&lt; acceptedPoly[finalFractures[j]].vertices[idx] &lt;&lt; <span class="stringliteral">&quot; &quot;</span> </div><div class="line"><a name="l00483"></a><span class="lineno">  483</span>&#160;                           &lt;&lt; acceptedPoly[finalFractures[j]].vertices[idx+1] &lt;&lt; <span class="stringliteral">&quot; &quot;</span> </div><div class="line"><a name="l00484"></a><span class="lineno">  484</span>&#160;                           &lt;&lt; acceptedPoly[finalFractures[j]].vertices[idx+2] &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>; </div><div class="line"><a name="l00485"></a><span class="lineno">  485</span>&#160;                count++;</div><div class="line"><a name="l00486"></a><span class="lineno">  486</span>&#160;            }</div><div class="line"><a name="l00487"></a><span class="lineno">  487</span>&#160;    }    </div><div class="line"><a name="l00488"></a><span class="lineno">  488</span>&#160;        </div><div class="line"><a name="l00489"></a><span class="lineno">  489</span>&#160;    <span class="comment">// Write line connectivity</span></div><div class="line"><a name="l00490"></a><span class="lineno">  490</span>&#160;    count = 1;<span class="comment">// Counter for node numbers</span></div><div class="line"><a name="l00491"></a><span class="lineno">  491</span>&#160;    <span class="keywordtype">int</span> count2 = 1;<span class="comment">// Counter for lines written</span></div><div class="line"><a name="l00492"></a><span class="lineno">  492</span>&#160;    <span class="keywordtype">int</span> j;</div><div class="line"><a name="l00493"></a><span class="lineno">  493</span>&#160;    <span class="keywordflow">for</span> (j = 0; j&lt;polyCount; j++){        </div><div class="line"><a name="l00494"></a><span class="lineno">  494</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; acceptedPoly[finalFractures[j]].numberOfNodes-1; i++) {</div><div class="line"><a name="l00495"></a><span class="lineno">  495</span>&#160;            polyOutput &lt;&lt; count2&lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; j+1 &lt;&lt; <span class="stringliteral">&quot; line &quot;</span> &lt;&lt; count &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt;count+1&lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>; </div><div class="line"><a name="l00496"></a><span class="lineno">  496</span>&#160;            count++;</div><div class="line"><a name="l00497"></a><span class="lineno">  497</span>&#160;            count2++;</div><div class="line"><a name="l00498"></a><span class="lineno">  498</span>&#160;        }</div><div class="line"><a name="l00499"></a><span class="lineno">  499</span>&#160;    count++;</div><div class="line"><a name="l00500"></a><span class="lineno">  500</span>&#160;    }</div><div class="line"><a name="l00501"></a><span class="lineno">  501</span>&#160;        </div><div class="line"><a name="l00502"></a><span class="lineno">  502</span>&#160;    polyOutput.close(); <span class="comment">// Done with polygons inp file</span></div><div class="line"><a name="l00503"></a><span class="lineno">  503</span>&#160;}</div><div class="line"><a name="l00504"></a><span class="lineno">  504</span>&#160;</div><div class="line"><a name="l00505"></a><span class="lineno">  505</span>&#160;<span class="comment">/* writePolysInp() ****************************************************************************/</span></div><div class="line"><a name="l00510"></a><span class="lineno"><a class="line" href="output_8h.html#aa1811bfba84e52254a8193a2fd9572b9">  510</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#aa1811bfba84e52254a8193a2fd9572b9">writePolysInp</a>(std::vector&lt;unsigned int&gt; &amp;finalFractures, std::vector&lt;Poly&gt; &amp;acceptedPoly, std::string &amp;output) {</div><div class="line"><a name="l00511"></a><span class="lineno">  511</span>&#160;</div><div class="line"><a name="l00512"></a><span class="lineno">  512</span>&#160;    std::ofstream polyOutput;</div><div class="line"><a name="l00513"></a><span class="lineno">  513</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;Writing poly inp files\n&quot;</span>;</div><div class="line"><a name="l00514"></a><span class="lineno">  514</span>&#160;</div><div class="line"><a name="l00515"></a><span class="lineno">  515</span>&#160;    <span class="keywordtype">int</span> polyCount = finalFractures.size();</div><div class="line"><a name="l00516"></a><span class="lineno">  516</span>&#160;  </div><div class="line"><a name="l00517"></a><span class="lineno">  517</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> j = 0; j &lt; polyCount; j++) {    </div><div class="line"><a name="l00518"></a><span class="lineno">  518</span>&#160;        std::string polyOutputFile = output + <span class="stringliteral">&quot;/polys/poly_&quot;</span> + std::to_string(j+1) + <span class="stringliteral">&quot;.inp&quot;</span>;</div><div class="line"><a name="l00519"></a><span class="lineno">  519</span>&#160; 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       <span class="comment">// Write vertices   </span></div><div class="line"><a name="l00526"></a><span class="lineno">  526</span>&#160;        <span class="keywordtype">int</span> numberOfNodes = acceptedPoly[finalFractures[j]].numberOfNodes; </div><div class="line"><a name="l00527"></a><span class="lineno">  527</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; numberOfNodes; i++) {</div><div class="line"><a name="l00528"></a><span class="lineno">  528</span>&#160;            <span class="keywordtype">int</span> idx = i*3;        </div><div class="line"><a name="l00529"></a><span class="lineno">  529</span>&#160;            polyOutput &lt;&lt; std::setprecision(15) &lt;&lt; i+1 &lt;&lt; <span class="stringliteral">&quot; &quot;</span> </div><div class="line"><a name="l00530"></a><span class="lineno">  530</span>&#160;                       &lt;&lt; acceptedPoly[finalFractures[j]].vertices[idx] &lt;&lt; <span class="stringliteral">&quot; &quot;</span> </div><div class="line"><a name="l00531"></a><span class="lineno">  531</span>&#160;                       &lt;&lt; acceptedPoly[finalFractures[j]].vertices[idx+1] &lt;&lt; <span class="stringliteral">&quot; &quot;</span> </div><div class="line"><a name="l00532"></a><span class="lineno">  532</span>&#160;                       &lt;&lt; acceptedPoly[finalFractures[j]].vertices[idx+2] &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>; </div><div class="line"><a name="l00533"></a><span class="lineno">  533</span>&#160;        }</div><div class="line"><a name="l00534"></a><span class="lineno">  534</span>&#160;</div><div class="line"><a name="l00535"></a><span class="lineno">  535</span>&#160;        <span class="comment">// Write line connectivity</span></div><div class="line"><a name="l00536"></a><span class="lineno">  536</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 1; i &lt; numberOfNodes; i++) {</div><div class="line"><a name="l00537"></a><span class="lineno">  537</span>&#160;            polyOutput &lt;&lt; i &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; j+1  &lt;&lt; <span class="stringliteral">&quot; line &quot;</span> &lt;&lt; i  &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; i+1 &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00538"></a><span class="lineno">  538</span>&#160;        }</div><div class="line"><a name="l00539"></a><span class="lineno">  539</span>&#160;        polyOutput.close();</div><div class="line"><a name="l00540"></a><span class="lineno">  540</span>&#160;    }    </div><div class="line"><a name="l00541"></a><span class="lineno">  541</span>&#160;        </div><div class="line"><a name="l00542"></a><span class="lineno">  542</span>&#160;        </div><div class="line"><a name="l00543"></a><span class="lineno">  543</span>&#160;}</div><div class="line"><a name="l00544"></a><span class="lineno">  544</span>&#160;</div><div class="line"><a name="l00545"></a><span class="lineno">  545</span>&#160;<span class="comment">/* writeParamsFile() **************************************************************************/</span></div><div class="line"><a name="l00551"></a><span class="lineno"><a class="line" href="output_8h.html#a19629adecaacde4ddd07e983743802d2">  551</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a19629adecaacde4ddd07e983743802d2">writeParamsFile</a>(std::vector&lt;unsigned int&gt; &amp;finalFractures, std::vector&lt;Poly&gt; &amp;acceptedPoly, std::vector&lt;Shape&gt; &amp;shapeFamilies, <a class="code" href="struct_stats.html">Stats</a> &amp;pstats, std::vector&lt;Point&gt; &amp;triplePoints, std::string &amp;output) {</div><div class="line"><a name="l00552"></a><span class="lineno">  552</span>&#160;</div><div class="line"><a name="l00553"></a><span class="lineno">  553</span>&#160;    std::ofstream params;</div><div class="line"><a name="l00554"></a><span class="lineno">  554</span>&#160;    std::string paramsOutputFile = output+<span class="stringliteral">&quot;/params.txt&quot;</span>;</div><div class="line"><a name="l00555"></a><span class="lineno">  555</span>&#160;    params.open(paramsOutputFile.c_str(), std::ofstream::out | std::ofstream::trunc);</div><div class="line"><a name="l00556"></a><span class="lineno">  556</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(params, paramsOutputFile);</div><div class="line"><a name="l00557"></a><span class="lineno">  557</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;Writing &quot;</span> &lt;&lt; paramsOutputFile &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00558"></a><span class="lineno">  558</span>&#160;    params &lt;&lt; finalFractures.size() &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00559"></a><span class="lineno">  559</span>&#160;    params &lt;&lt; <a class="code" href="input_8h.html#a8ee9be1b5aa75abae556de3088cba6d9">h</a> &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00560"></a><span class="lineno">  560</span>&#160;</div><div class="line"><a name="l00561"></a><span class="lineno">  561</span>&#160;    params &lt;&lt; <a class="code" href="input_8h.html#aa98b605ce677adf12fe97d6fa9076b1c">visualizationMode</a> &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>; <span class="comment">// Production mode</span></div><div class="line"><a name="l00562"></a><span class="lineno">  562</span>&#160;    params &lt;&lt; pstats.<a class="code" href="struct_stats.html#a84c9fecbd7e80b7cf93b185952618062">intersectionNodeCount</a>/2 - pstats.<a class="code" href="struct_stats.html#a6d521913f1a280406a6536cb632c4356">tripleNodeCount</a> &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00563"></a><span class="lineno">  563</span>&#160;    </div><div class="line"><a name="l00564"></a><span class="lineno">  564</span>&#160;    params.close();</div><div class="line"><a name="l00565"></a><span class="lineno">  565</span>&#160;}</div><div class="line"><a name="l00566"></a><span class="lineno">  566</span>&#160;</div><div class="line"><a name="l00567"></a><span class="lineno">  567</span>&#160;</div><div class="line"><a name="l00568"></a><span class="lineno">  568</span>&#160;<span class="comment">/* writeApertureFile() ************************************************************************/</span></div><div class="line"><a name="l00573"></a><span class="lineno"><a class="line" href="output_8h.html#a79e5f6f87216f01ab2c692e4be77802b">  573</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a79e5f6f87216f01ab2c692e4be77802b">writeApertureFile</a>(std::vector&lt;unsigned int&gt; &amp;finalFractures, std::vector&lt;Poly&gt; &amp;acceptedPoly, std::string &amp;output) {</div><div class="line"><a name="l00574"></a><span class="lineno">  574</span>&#160;    std::string file = output+<span class="stringliteral">&quot;/aperture.dat&quot;</span>;</div><div class="line"><a name="l00575"></a><span class="lineno">  575</span>&#160;    std::ofstream ap;</div><div class="line"><a name="l00576"></a><span class="lineno">  576</span>&#160;    ap.open(file.c_str(), std::ofstream::out | std::ofstream::trunc);</div><div class="line"><a name="l00577"></a><span class="lineno">  577</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(ap, file);</div><div class="line"><a name="l00578"></a><span class="lineno">  578</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;Writing aperture.dat\n&quot;</span>;</div><div class="line"><a name="l00579"></a><span class="lineno">  579</span>&#160;    ap&lt;&lt; <span class="stringliteral">&quot;aperture.dat&quot;</span> &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00580"></a><span class="lineno">  580</span>&#160;   </div><div class="line"><a name="l00581"></a><span class="lineno">  581</span>&#160;    <span class="keywordtype">int</span> size = finalFractures.size();</div><div class="line"><a name="l00582"></a><span class="lineno">  582</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; size; i++) {</div><div class="line"><a name="l00583"></a><span class="lineno">  583</span>&#160;        ap &lt;&lt; -(7+i) &lt;&lt; <span class="stringliteral">&quot; 0 0 &quot;</span> &lt;&lt; std::setprecision(10) &lt;&lt; acceptedPoly[finalFractures[i]].aperture &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00584"></a><span class="lineno">  584</span>&#160;    }</div><div class="line"><a name="l00585"></a><span class="lineno">  585</span>&#160;    </div><div class="line"><a name="l00586"></a><span class="lineno">  586</span>&#160;    ap.close();</div><div class="line"><a name="l00587"></a><span class="lineno">  587</span>&#160;}</div><div class="line"><a name="l00588"></a><span class="lineno">  588</span>&#160;</div><div class="line"><a name="l00589"></a><span class="lineno">  589</span>&#160;<span class="comment">/* writePermFile() ****************************************************************************/</span></div><div class="line"><a name="l00594"></a><span class="lineno"><a class="line" href="output_8h.html#a28380919d0aa1bbe73f57221118b948b">  594</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a28380919d0aa1bbe73f57221118b948b">writePermFile</a>(std::vector&lt;unsigned int&gt; &amp;finalFractures, std::vector&lt;Poly&gt; &amp;acceptedPoly, std::string &amp;output) {</div><div class="line"><a name="l00595"></a><span class="lineno">  595</span>&#160;    std::string file = output+<span class="stringliteral">&quot;/perm.dat&quot;</span>; </div><div class="line"><a name="l00596"></a><span class="lineno">  596</span>&#160;    std::ofstream perm;</div><div class="line"><a name="l00597"></a><span class="lineno">  597</span>&#160;    perm.open(file.c_str(), std::ofstream::out | std::ofstream::trunc);</div><div class="line"><a name="l00598"></a><span class="lineno">  598</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(perm, file);</div><div class="line"><a name="l00599"></a><span class="lineno">  599</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;Writing perm.dat\n&quot;</span>;</div><div class="line"><a name="l00600"></a><span class="lineno">  600</span>&#160;    perm&lt;&lt; <span class="stringliteral">&quot;permeabiliy&quot;</span> &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00601"></a><span class="lineno">  601</span>&#160;    </div><div class="line"><a name="l00602"></a><span class="lineno">  602</span>&#160;    <span class="keywordtype">int</span> size = finalFractures.size();</div><div class="line"><a name="l00603"></a><span class="lineno">  603</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; size; i++) {</div><div class="line"><a name="l00604"></a><span class="lineno">  604</span>&#160;       perm &lt;&lt; -(7+i) &lt;&lt; <span class="stringliteral">&quot; 0 0 &quot;</span> &lt;&lt;  std::setprecision(10) &lt;&lt; acceptedPoly[finalFractures[i]].permeability &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt;acceptedPoly[finalFractures[i]].permeability&lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt;acceptedPoly[finalFractures[i]].permeability&lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00605"></a><span class="lineno">  605</span>&#160;                                            </div><div class="line"><a name="l00606"></a><span class="lineno">  606</span>&#160;       }</div><div class="line"><a name="l00607"></a><span class="lineno">  607</span>&#160;    </div><div class="line"><a name="l00608"></a><span class="lineno">  608</span>&#160;    perm.close();</div><div class="line"><a name="l00609"></a><span class="lineno">  609</span>&#160;}</div><div class="line"><a name="l00610"></a><span class="lineno">  610</span>&#160;</div><div class="line"><a name="l00611"></a><span class="lineno">  611</span>&#160;</div><div class="line"><a name="l00612"></a><span class="lineno">  612</span>&#160;<span class="comment">/* writeRadiiFile() ***************************************************************************/</span></div><div class="line"><a name="l00617"></a><span class="lineno"><a class="line" href="output_8h.html#a5a3e3e3566cdf38d5e17abbc9c5f8d7d">  617</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a5a3e3e3566cdf38d5e17abbc9c5f8d7d">writeRadiiFile</a>(std::vector&lt;unsigned int&gt; &amp;finalFractures, std::vector&lt;Poly&gt; &amp;acceptedPoly, std::string &amp;output) {</div><div class="line"><a name="l00618"></a><span class="lineno">  618</span>&#160;</div><div class="line"><a name="l00619"></a><span class="lineno">  619</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;Writing Radii File (radii.dat)\n&quot;</span>;</div><div class="line"><a name="l00620"></a><span class="lineno">  620</span>&#160;</div><div class="line"><a name="l00621"></a><span class="lineno">  621</span>&#160;    std::string file = output+<span class="stringliteral">&quot;/radii.dat&quot;</span>;</div><div class="line"><a name="l00622"></a><span class="lineno">  622</span>&#160;    std::ofstream radii;</div><div class="line"><a name="l00623"></a><span class="lineno">  623</span>&#160;    radii.open(file.c_str(), std::ofstream::out | std::ofstream::trunc);</div><div class="line"><a name="l00624"></a><span class="lineno">  624</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(radii, file);</div><div class="line"><a name="l00625"></a><span class="lineno">  625</span>&#160;    radii &lt;&lt; <span class="stringliteral">&quot;Format: xRadius yRadius Family# Removed (-1 = userRectangle, 0 = userEllipse, &gt; 0 is family in order of famProb)\n&quot;</span>;</div><div class="line"><a name="l00626"></a><span class="lineno">  626</span>&#160;</div><div class="line"><a name="l00627"></a><span class="lineno">  627</span>&#160;    <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> finalFractLimit = finalFractures.size() - 1;</div><div class="line"><a name="l00628"></a><span class="lineno">  628</span>&#160;    <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> size = acceptedPoly.size();</div><div class="line"><a name="l00629"></a><span class="lineno">  629</span>&#160;    <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> curFinalIdx = 0;</div><div class="line"><a name="l00630"></a><span class="lineno">  630</span>&#160;</div><div class="line"><a name="l00631"></a><span class="lineno">  631</span>&#160;    <span class="keywordflow">if</span> (finalFractures.size() &lt;= 0) <span class="keywordflow">return</span>;</div><div class="line"><a name="l00632"></a><span class="lineno">  632</span>&#160;</div><div class="line"><a name="l00633"></a><span class="lineno">  633</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i &lt; size; i++) {</div><div class="line"><a name="l00634"></a><span class="lineno">  634</span>&#160;        radii &lt;&lt;  std::setprecision(8) &lt;&lt; acceptedPoly[i].xradius &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; acceptedPoly[i].yradius</div><div class="line"><a name="l00635"></a><span class="lineno">  635</span>&#160;                   &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; acceptedPoly[i].familyNum+1;</div><div class="line"><a name="l00636"></a><span class="lineno">  636</span>&#160;</div><div class="line"><a name="l00637"></a><span class="lineno">  637</span>&#160;        <span class="comment">// If poly is not in finalFractures list</span></div><div class="line"><a name="l00638"></a><span class="lineno">  638</span>&#160;        <span class="comment">// mark that is was removed </span></div><div class="line"><a name="l00639"></a><span class="lineno">  639</span>&#160;        <span class="keywordflow">if</span> (i != finalFractures[curFinalIdx]) {</div><div class="line"><a name="l00640"></a><span class="lineno">  640</span>&#160;           radii &lt;&lt; <span class="stringliteral">&quot; R\n&quot;</span>;</div><div class="line"><a name="l00641"></a><span class="lineno">  641</span>&#160;        }</div><div class="line"><a name="l00642"></a><span class="lineno">  642</span>&#160;        <span class="keywordflow">else</span> {</div><div class="line"><a name="l00643"></a><span class="lineno">  643</span>&#160;            <span class="keywordflow">if</span> (curFinalIdx &lt; finalFractLimit) {</div><div class="line"><a name="l00644"></a><span class="lineno">  644</span>&#160;                curFinalIdx++;</div><div class="line"><a name="l00645"></a><span class="lineno">  645</span>&#160;            }</div><div class="line"><a name="l00646"></a><span class="lineno">  646</span>&#160;            radii &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00647"></a><span class="lineno">  647</span>&#160;        }</div><div class="line"><a name="l00648"></a><span class="lineno">  648</span>&#160;    </div><div class="line"><a name="l00649"></a><span class="lineno">  649</span>&#160;    }</div><div class="line"><a name="l00650"></a><span class="lineno">  650</span>&#160;   radii.close();</div><div class="line"><a name="l00651"></a><span class="lineno">  651</span>&#160;}</div><div class="line"><a name="l00652"></a><span class="lineno">  652</span>&#160;</div><div class="line"><a name="l00653"></a><span class="lineno">  653</span>&#160;</div><div class="line"><a name="l00654"></a><span class="lineno">  654</span>&#160;<span class="comment">/* writeFractureTranslations() ****************************************************************/</span></div><div class="line"><a name="l00659"></a><span class="lineno"><a class="line" href="output_8h.html#abbff4246d763bc6aaa86ce9baa5f1de9">  659</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#abbff4246d763bc6aaa86ce9baa5f1de9">writeFractureTranslations</a>(std::vector&lt;unsigned int&gt; &amp;finalFractures, std::vector&lt;Poly&gt; &amp;acceptedPoly, std::string &amp;output) {</div><div class="line"><a name="l00660"></a><span class="lineno">  660</span>&#160;</div><div class="line"><a name="l00661"></a><span class="lineno">  661</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;Writing Fracture Translations File (translations.dat)\n&quot;</span>;</div><div class="line"><a name="l00662"></a><span class="lineno">  662</span>&#160;    std::string filePath = output + <span class="stringliteral">&quot;/translations.dat&quot;</span>;</div><div class="line"><a name="l00663"></a><span class="lineno">  663</span>&#160;    std::ofstream file;</div><div class="line"><a name="l00664"></a><span class="lineno">  664</span>&#160;    file.open(filePath.c_str(), std::ofstream::out | std::ofstream::trunc);</div><div class="line"><a name="l00665"></a><span class="lineno">  665</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(file, filePath);</div><div class="line"><a name="l00666"></a><span class="lineno">  666</span>&#160;    file &lt;&lt; <span class="stringliteral">&quot;Format: x y z  (R = removed from domain due to fracture isolation)\n&quot;</span>;</div><div class="line"><a name="l00667"></a><span class="lineno">  667</span>&#160;</div><div class="line"><a name="l00668"></a><span class="lineno">  668</span>&#160;    <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> finalFractLimit = finalFractures.size() - 1;</div><div class="line"><a name="l00669"></a><span class="lineno">  669</span>&#160;    <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> size = acceptedPoly.size();</div><div class="line"><a name="l00670"></a><span class="lineno">  670</span>&#160;    <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> curFinalIdx = 0;</div><div class="line"><a name="l00671"></a><span class="lineno">  671</span>&#160;</div><div class="line"><a name="l00672"></a><span class="lineno">  672</span>&#160;    <span class="keywordflow">if</span> (finalFractures.size() &lt;= 0) <span class="keywordflow">return</span>;</div><div class="line"><a name="l00673"></a><span class="lineno">  673</span>&#160;</div><div class="line"><a name="l00674"></a><span class="lineno">  674</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i &lt; size; i++) {</div><div class="line"><a name="l00675"></a><span class="lineno">  675</span>&#160;        file &lt;&lt; std::setprecision(10) &lt;&lt; acceptedPoly[i].translation[0] &lt;&lt; <span class="stringliteral">&quot; &quot;</span> </div><div class="line"><a name="l00676"></a><span class="lineno">  676</span>&#160;             &lt;&lt; acceptedPoly[i].translation[1] &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; acceptedPoly[i].translation[2];</div><div class="line"><a name="l00677"></a><span class="lineno">  677</span>&#160;</div><div class="line"><a name="l00678"></a><span class="lineno">  678</span>&#160;        <span class="comment">// If poly is not in finalFractures list</span></div><div class="line"><a name="l00679"></a><span class="lineno">  679</span>&#160;        <span class="comment">// mark that is was removed </span></div><div class="line"><a name="l00680"></a><span class="lineno">  680</span>&#160;        <span class="keywordflow">if</span> (i != finalFractures[curFinalIdx]) {</div><div class="line"><a name="l00681"></a><span class="lineno">  681</span>&#160;           file &lt;&lt; <span class="stringliteral">&quot; R\n&quot;</span>;</div><div class="line"><a name="l00682"></a><span class="lineno">  682</span>&#160;        }</div><div class="line"><a name="l00683"></a><span class="lineno">  683</span>&#160;        <span class="keywordflow">else</span> {</div><div class="line"><a name="l00684"></a><span class="lineno">  684</span>&#160;            <span class="keywordflow">if</span> (curFinalIdx &lt; finalFractLimit) {</div><div class="line"><a name="l00685"></a><span class="lineno">  685</span>&#160;                curFinalIdx++;</div><div class="line"><a name="l00686"></a><span class="lineno">  686</span>&#160;            }</div><div class="line"><a name="l00687"></a><span class="lineno">  687</span>&#160;            file &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00688"></a><span class="lineno">  688</span>&#160;        }</div><div class="line"><a name="l00689"></a><span class="lineno">  689</span>&#160;    }</div><div class="line"><a name="l00690"></a><span class="lineno">  690</span>&#160;   file.close();</div><div class="line"><a name="l00691"></a><span class="lineno">  691</span>&#160;}</div><div class="line"><a name="l00692"></a><span class="lineno">  692</span>&#160;</div><div class="line"><a name="l00693"></a><span class="lineno">  693</span>&#160;<span class="comment">/* writeFinalPolyRadii() **********************************************************************/</span></div><div class="line"><a name="l00699"></a><span class="lineno"><a class="line" href="output_8h.html#a631030ad68c4db16e85d6aaafa50f753">  699</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a631030ad68c4db16e85d6aaafa50f753">writeFinalPolyRadii</a>(std::vector&lt;unsigned int&gt; &amp;finalFractures, std::vector&lt;Poly&gt; &amp;acceptedPoly, std::string &amp;output){</div><div class="line"><a name="l00700"></a><span class="lineno">  700</span>&#160;    std::string file = output + <span class="stringliteral">&quot;/radii_Final.dat&quot;</span>;</div><div class="line"><a name="l00701"></a><span class="lineno">  701</span>&#160;    std::ofstream radiiFinal;</div><div class="line"><a name="l00702"></a><span class="lineno">  702</span>&#160;    radiiFinal.open(file.c_str(), std::ofstream::out | std::ofstream::trunc);</div><div class="line"><a name="l00703"></a><span class="lineno">  703</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(radiiFinal, file);</div><div class="line"><a name="l00704"></a><span class="lineno">  704</span>&#160;    radiiFinal &lt;&lt; <span class="stringliteral">&quot;Fracture Radii List After Isolated Fracture and Cluster Removal\n&quot;</span>;</div><div class="line"><a name="l00705"></a><span class="lineno">  705</span>&#160;    radiiFinal &lt;&lt; <span class="stringliteral">&quot;Format: xRadius yRadius Family# (-1 = userRectangle, 0 = userEllipse, &gt; 0 is family in order of famProb)\n&quot;</span>;</div><div class="line"><a name="l00706"></a><span class="lineno">  706</span>&#160;</div><div class="line"><a name="l00707"></a><span class="lineno">  707</span>&#160;    <span class="keywordtype">int</span> size =   finalFractures.size();</div><div class="line"><a name="l00708"></a><span class="lineno">  708</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; size; i++) {</div><div class="line"><a name="l00709"></a><span class="lineno">  709</span>&#160;        radiiFinal &lt;&lt; acceptedPoly[finalFractures[i]].xradius &lt;&lt; <span class="stringliteral">&quot; &quot;</span> </div><div class="line"><a name="l00710"></a><span class="lineno">  710</span>&#160;                   &lt;&lt; acceptedPoly[finalFractures[i]].yradius &lt;&lt; <span class="stringliteral">&quot; &quot;</span> </div><div class="line"><a name="l00711"></a><span class="lineno">  711</span>&#160;                   &lt;&lt; acceptedPoly[finalFractures[i]].familyNum + 1 &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00712"></a><span class="lineno">  712</span>&#160;    }</div><div class="line"><a name="l00713"></a><span class="lineno">  713</span>&#160;    radiiFinal.close();</div><div class="line"><a name="l00714"></a><span class="lineno">  714</span>&#160;}</div><div class="line"><a name="l00715"></a><span class="lineno">  715</span>&#160;</div><div class="line"><a name="l00716"></a><span class="lineno">  716</span>&#160;</div><div class="line"><a name="l00717"></a><span class="lineno">  717</span>&#160;<span class="comment">/* writeAllAcceptedRadii() ********************************************************************/</span></div><div class="line"><a name="l00723"></a><span class="lineno"><a class="line" href="output_8h.html#a3b48e92dd0af09b7f288339c78b831d2">  723</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a3b48e92dd0af09b7f288339c78b831d2">writeAllAcceptedRadii</a>(std::vector&lt;Poly&gt; &amp;acceptedPoly, std::string &amp;output){</div><div class="line"><a name="l00724"></a><span class="lineno">  724</span>&#160;    std::string file = output + <span class="stringliteral">&quot;/radii_AllAccepted.dat&quot;</span>;</div><div class="line"><a name="l00725"></a><span class="lineno">  725</span>&#160;    std::ofstream radiiAcpt;</div><div class="line"><a name="l00726"></a><span class="lineno">  726</span>&#160;    radiiAcpt.open(file.c_str(), std::ofstream::out | std::ofstream::trunc);</div><div class="line"><a name="l00727"></a><span class="lineno">  727</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(radiiAcpt, file);</div><div class="line"><a name="l00728"></a><span class="lineno">  728</span>&#160;    radiiAcpt &lt;&lt; <span class="stringliteral">&quot;Fracture Radii List Before Isolated Fracture and Cluster Removal\n&quot;</span>;</div><div class="line"><a name="l00729"></a><span class="lineno">  729</span>&#160;    radiiAcpt &lt;&lt; <span class="stringliteral">&quot;Format: xRadius yRadius Distrubution# (-1 = userRectangle, 0 = userEllipse, &gt; 0 is family in order of famProb)\n&quot;</span>;</div><div class="line"><a name="l00730"></a><span class="lineno">  730</span>&#160;</div><div class="line"><a name="l00731"></a><span class="lineno">  731</span>&#160;    <span class="keywordtype">int</span> size = acceptedPoly.size();</div><div class="line"><a name="l00732"></a><span class="lineno">  732</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; size; i++) {</div><div class="line"><a name="l00733"></a><span class="lineno">  733</span>&#160;        radiiAcpt &lt;&lt; acceptedPoly[i].xradius &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; acceptedPoly[i].yradius &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt;acceptedPoly[i].familyNum+1 &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00734"></a><span class="lineno">  734</span>&#160;    }</div><div class="line"><a name="l00735"></a><span class="lineno">  735</span>&#160;    radiiAcpt.close();</div><div class="line"><a name="l00736"></a><span class="lineno">  736</span>&#160;}</div><div class="line"><a name="l00737"></a><span class="lineno">  737</span>&#160;</div><div class="line"><a name="l00738"></a><span class="lineno">  738</span>&#160;</div><div class="line"><a name="l00739"></a><span class="lineno">  739</span>&#160;<span class="comment">/* writeAllAcceptedRadii_OfFamily() ***********************************************************/</span></div><div class="line"><a name="l00747"></a><span class="lineno"><a class="line" href="output_8h.html#a6923d93d3476402eb12320286998adb0">  747</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a6923d93d3476402eb12320286998adb0">writeAllAcceptedRadii_OfFamily</a>(<span class="keywordtype">int</span> familyNum, std::vector&lt;Poly&gt; &amp;acceptedPoly, std::string &amp;output){</div><div class="line"><a name="l00748"></a><span class="lineno">  748</span>&#160;    std::string fileName = output + <span class="stringliteral">&quot;/radii_AllAccepted_Fam_&quot;</span> + std::to_string(familyNum + 1) + <span class="stringliteral">&quot;.dat&quot;</span>;</div><div class="line"><a name="l00749"></a><span class="lineno">  749</span>&#160;    std::ofstream file;</div><div class="line"><a name="l00750"></a><span class="lineno">  750</span>&#160;    file.open(fileName.c_str(), std::ofstream::out | std::ofstream::trunc);</div><div class="line"><a name="l00751"></a><span class="lineno">  751</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(file, fileName);</div><div class="line"><a name="l00752"></a><span class="lineno">  752</span>&#160;    file &lt;&lt; <span class="stringliteral">&quot;Fracture Radii List Before Isolated Fracture and Cluster Removal (Family &quot;</span> &lt;&lt; familyNum+1 &lt;&lt; <span class="stringliteral">&quot;)\n&quot;</span>;</div><div class="line"><a name="l00753"></a><span class="lineno">  753</span>&#160;    file &lt;&lt; <span class="stringliteral">&quot;Format: xRadius yRadius Distrubution# (-1 = userRectangle, 0 = userEllipse, &gt; 0 is family in order of famProb)\n&quot;</span>;</div><div class="line"><a name="l00754"></a><span class="lineno">  754</span>&#160;</div><div class="line"><a name="l00755"></a><span class="lineno">  755</span>&#160;    <span class="keywordtype">int</span> size = acceptedPoly.size();</div><div class="line"><a name="l00756"></a><span class="lineno">  756</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; size; i++) {</div><div class="line"><a name="l00757"></a><span class="lineno">  757</span>&#160;        <span class="keywordflow">if</span> (acceptedPoly[i].familyNum == familyNum) {</div><div class="line"><a name="l00758"></a><span class="lineno">  758</span>&#160;            file &lt;&lt; acceptedPoly[i].xradius &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; acceptedPoly[i].yradius &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt;acceptedPoly[i].familyNum+1 &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00759"></a><span class="lineno">  759</span>&#160;        }</div><div class="line"><a name="l00760"></a><span class="lineno">  760</span>&#160;    }</div><div class="line"><a name="l00761"></a><span class="lineno">  761</span>&#160;    file.close();</div><div class="line"><a name="l00762"></a><span class="lineno">  762</span>&#160;}</div><div class="line"><a name="l00763"></a><span class="lineno">  763</span>&#160;</div><div class="line"><a name="l00764"></a><span class="lineno">  764</span>&#160;<span class="comment">/* writeAllAcceptedRadii_OfFamily() ***********************************************************/</span></div><div class="line"><a name="l00772"></a><span class="lineno"><a class="line" href="output_8h.html#a5ae0b1fd93e78fd4efc7031d70af5457">  772</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a5ae0b1fd93e78fd4efc7031d70af5457">writeFinalRadii_OfFamily</a>(std::vector&lt;unsigned int&gt; &amp;finalFractures, <span class="keywordtype">int</span> familyNum, std::vector&lt;Poly&gt; &amp;acceptedPoly, std::string &amp;output){</div><div class="line"><a name="l00773"></a><span class="lineno">  773</span>&#160;    std::string fileName = output+<span class="stringliteral">&quot;/radii_Final_Fam_&quot;</span> + std::to_string(familyNum + 1) + <span class="stringliteral">&quot;.dat&quot;</span>;</div><div class="line"><a name="l00774"></a><span class="lineno">  774</span>&#160;    std::ofstream file;</div><div class="line"><a name="l00775"></a><span class="lineno">  775</span>&#160;    file.open(fileName.c_str(), std::ofstream::out | std::ofstream::trunc);</div><div class="line"><a name="l00776"></a><span class="lineno">  776</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(file, fileName);</div><div class="line"><a name="l00777"></a><span class="lineno">  777</span>&#160;    file &lt;&lt; <span class="stringliteral">&quot;Fracture Radii List After Isolated Fracture and Cluster Removal (Family &quot;</span> &lt;&lt; familyNum+1 &lt;&lt; <span class="stringliteral">&quot;)\n&quot;</span>;</div><div class="line"><a name="l00778"></a><span class="lineno">  778</span>&#160;    file &lt;&lt; <span class="stringliteral">&quot;Format: xRadius yRadius Distrubution# (-1 = userRectangle, 0 = userEllipse, &gt; 0 is family in order of famProb)\n&quot;</span>;</div><div class="line"><a name="l00779"></a><span class="lineno">  779</span>&#160;</div><div class="line"><a name="l00780"></a><span class="lineno">  780</span>&#160;    <span class="keywordtype">int</span> size = finalFractures.size();</div><div class="line"><a name="l00781"></a><span class="lineno">  781</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; size; i++) {</div><div class="line"><a name="l00782"></a><span class="lineno">  782</span>&#160;        <span class="keywordflow">if</span> (acceptedPoly[finalFractures[i]].familyNum == familyNum) {</div><div class="line"><a name="l00783"></a><span class="lineno">  783</span>&#160;            file &lt;&lt; acceptedPoly[finalFractures[i]].xradius &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; acceptedPoly[finalFractures[i]].yradius &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt;acceptedPoly[finalFractures[i]].familyNum+1 &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00784"></a><span class="lineno">  784</span>&#160;        }</div><div class="line"><a name="l00785"></a><span class="lineno">  785</span>&#160;    }</div><div class="line"><a name="l00786"></a><span class="lineno">  786</span>&#160;    file.close();</div><div class="line"><a name="l00787"></a><span class="lineno">  787</span>&#160;}</div><div class="line"><a name="l00788"></a><span class="lineno">  788</span>&#160;</div><div class="line"><a name="l00789"></a><span class="lineno">  789</span>&#160;</div><div class="line"><a name="l00790"></a><span class="lineno">  790</span>&#160;<span class="comment">/* writeAllAcceptedRadii_OfFamily() ***********************************************************/</span></div><div class="line"><a name="l00797"></a><span class="lineno"><a class="line" href="output_8h.html#a77e468c6337aff7763211d1dd37230bf">  797</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a77e468c6337aff7763211d1dd37230bf">writeTriplePts</a>(std::vector&lt;Point&gt; &amp;triplePoints, std::vector&lt;unsigned int&gt; &amp;finalFractures, std::vector&lt;Poly&gt; &amp;acceptedPoly, std::vector&lt;IntPoints&gt; &amp;intPts, std::string &amp;output) {</div><div class="line"><a name="l00798"></a><span class="lineno">  798</span>&#160; </div><div class="line"><a name="l00799"></a><span class="lineno">  799</span>&#160;</div><div class="line"><a name="l00800"></a><span class="lineno">  800</span>&#160;    std::string fileName = output + <span class="stringliteral">&quot;/triple_points.dat&quot;</span>;</div><div class="line"><a name="l00801"></a><span class="lineno">  801</span>&#160;    std::ofstream file;</div><div class="line"><a name="l00802"></a><span class="lineno">  802</span>&#160;    file.open(fileName.c_str(), std::ofstream::out | std::ofstream::trunc);</div><div class="line"><a name="l00803"></a><span class="lineno">  803</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(file, fileName);</div><div class="line"><a name="l00804"></a><span class="lineno">  804</span>&#160;   </div><div class="line"><a name="l00805"></a><span class="lineno">  805</span>&#160;    <span class="comment">// Save triple point indices from final list of fractures to temp array</span></div><div class="line"><a name="l00806"></a><span class="lineno">  806</span>&#160;    <span class="comment">// There will be duplicates  which need to be removed</span></div><div class="line"><a name="l00807"></a><span class="lineno">  807</span>&#160;    <span class="comment">// before writing to file</span></div><div class="line"><a name="l00808"></a><span class="lineno">  808</span>&#160;    std::vector&lt;unsigned int&gt; triplePtsList;</div><div class="line"><a name="l00809"></a><span class="lineno">  809</span>&#160;</div><div class="line"><a name="l00810"></a><span class="lineno">  810</span>&#160;    <span class="keywordtype">int</span> size = finalFractures.size();</div><div class="line"><a name="l00811"></a><span class="lineno">  811</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; size; i++) {</div><div class="line"><a name="l00812"></a><span class="lineno">  812</span>&#160;        <span class="keywordtype">int</span> intersectCount = acceptedPoly[finalFractures[i]].intersectionIndex.size();</div><div class="line"><a name="l00813"></a><span class="lineno">  813</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> j = 0; j &lt; intersectCount; j++) {                                        </div><div class="line"><a name="l00814"></a><span class="lineno">  814</span>&#160;            <span class="keywordtype">int</span> tripleSize = intPts[acceptedPoly[finalFractures[i]].intersectionIndex[j]].triplePointsIdx.size();</div><div class="line"><a name="l00815"></a><span class="lineno">  815</span>&#160;            <span class="keywordflow">for</span> (<span class="keywordtype">int</span> k = 0; k &lt; tripleSize; k++) {</div><div class="line"><a name="l00816"></a><span class="lineno">  816</span>&#160;                <span class="keywordtype">int</span> triplePtIdx = intPts[acceptedPoly[finalFractures[i]].intersectionIndex[j]].triplePointsIdx[k];</div><div class="line"><a name="l00817"></a><span class="lineno">  817</span>&#160;                triplePtsList.push_back(triplePtIdx);</div><div class="line"><a name="l00818"></a><span class="lineno">  818</span>&#160;            }</div><div class="line"><a name="l00819"></a><span class="lineno">  819</span>&#160;        }</div><div class="line"><a name="l00820"></a><span class="lineno">  820</span>&#160;    }</div><div class="line"><a name="l00821"></a><span class="lineno">  821</span>&#160; </div><div class="line"><a name="l00822"></a><span class="lineno">  822</span>&#160;    size = triplePtsList.size();</div><div class="line"><a name="l00823"></a><span class="lineno">  823</span>&#160;</div><div class="line"><a name="l00824"></a><span class="lineno">  824</span>&#160;    <span class="keywordflow">if</span> (size &gt; 0) {</div><div class="line"><a name="l00825"></a><span class="lineno">  825</span>&#160;</div><div class="line"><a name="l00826"></a><span class="lineno">  826</span>&#160;        <span class="comment">//remove duplicates</span></div><div class="line"><a name="l00827"></a><span class="lineno">  827</span>&#160;        std::sort(triplePtsList.begin(), triplePtsList.end());</div><div class="line"><a name="l00828"></a><span class="lineno">  828</span>&#160;        std::vector&lt;unsigned int&gt; finalPts;</div><div class="line"><a name="l00829"></a><span class="lineno">  829</span>&#160;        <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span>  prevPt = triplePtsList[0];</div><div class="line"><a name="l00830"></a><span class="lineno">  830</span>&#160;        finalPts.push_back(prevPt);</div><div class="line"><a name="l00831"></a><span class="lineno">  831</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 1; i &lt; size; i++) {</div><div class="line"><a name="l00832"></a><span class="lineno">  832</span>&#160;            <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> curPt = triplePtsList[i];</div><div class="line"><a name="l00833"></a><span class="lineno">  833</span>&#160;            <span class="keywordflow">if</span> (curPt != prevPt) {</div><div class="line"><a name="l00834"></a><span class="lineno">  834</span>&#160;                finalPts.push_back(curPt);</div><div class="line"><a name="l00835"></a><span class="lineno">  835</span>&#160;            }</div><div class="line"><a name="l00836"></a><span class="lineno">  836</span>&#160;            prevPt = curPt;</div><div class="line"><a name="l00837"></a><span class="lineno">  837</span>&#160;        }</div><div class="line"><a name="l00838"></a><span class="lineno">  838</span>&#160;        </div><div class="line"><a name="l00839"></a><span class="lineno">  839</span>&#160;        triplePtsList.clear();</div><div class="line"><a name="l00840"></a><span class="lineno">  840</span>&#160;</div><div class="line"><a name="l00841"></a><span class="lineno">  841</span>&#160;</div><div class="line"><a name="l00842"></a><span class="lineno">  842</span>&#160;        size = finalPts.size();</div><div class="line"><a name="l00843"></a><span class="lineno">  843</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; size; i++) {</div><div class="line"><a name="l00844"></a><span class="lineno">  844</span>&#160;        file &lt;&lt; std::setprecision(17) </div><div class="line"><a name="l00845"></a><span class="lineno">  845</span>&#160;             &lt;&lt; triplePoints[finalPts[i]].x  </div><div class="line"><a name="l00846"></a><span class="lineno">  846</span>&#160;             &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; triplePoints[finalPts[i]].y </div><div class="line"><a name="l00847"></a><span class="lineno">  847</span>&#160;             &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; triplePoints[finalPts[i]].z </div><div class="line"><a name="l00848"></a><span class="lineno">  848</span>&#160;             &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00849"></a><span class="lineno">  849</span>&#160;        }</div><div class="line"><a name="l00850"></a><span class="lineno">  850</span>&#160;    }</div><div class="line"><a name="l00851"></a><span class="lineno">  851</span>&#160;    file.close();</div><div class="line"><a name="l00852"></a><span class="lineno">  852</span>&#160;}</div><div class="line"><a name="l00853"></a><span class="lineno">  853</span>&#160;</div><div class="line"><a name="l00854"></a><span class="lineno">  854</span>&#160;</div><div class="line"><a name="l00855"></a><span class="lineno">  855</span>&#160;<span class="comment">/* writeRejectionStats() **********************************************************************/</span></div><div class="line"><a name="l00859"></a><span class="lineno"><a class="line" href="output_8h.html#ae4eaf0ac5f6d6af694f8c276bfbcc8ac">  859</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#ae4eaf0ac5f6d6af694f8c276bfbcc8ac">writeRejectionStats</a>(<a class="code" href="struct_stats.html">Stats</a> &amp;pstats, std::string &amp;output) {</div><div class="line"><a name="l00860"></a><span class="lineno">  860</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;Writing Rejection Statistics File (rejections.dat)\n&quot;</span>;</div><div class="line"><a name="l00861"></a><span class="lineno">  861</span>&#160;    std::string fileName = output+<span class="stringliteral">&quot;/rejections.dat&quot;</span>;</div><div class="line"><a name="l00862"></a><span class="lineno">  862</span>&#160;    std::ofstream file;</div><div class="line"><a name="l00863"></a><span class="lineno">  863</span>&#160;    file.open(fileName.c_str(), std::ofstream::out | std::ofstream::trunc);</div><div class="line"><a name="l00864"></a><span class="lineno">  864</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(file, fileName);</div><div class="line"><a name="l00865"></a><span class="lineno">  865</span>&#160;</div><div class="line"><a name="l00866"></a><span class="lineno">  866</span>&#160;    file &lt;&lt; pstats.<a class="code" href="struct_stats.html#a3c0ec96761b92e70bbb96de0df58cce5">rejectionReasons</a>.<a class="code" href="struct_rejection_reasons.html#ab935b00ed9bf36d47d435a3f4fbd328d">shortIntersection</a> &lt;&lt; <span class="stringliteral">&quot; Short Intersections \n&quot;</span>;</div><div class="line"><a name="l00867"></a><span class="lineno">  867</span>&#160;    file &lt;&lt; pstats.<a class="code" href="struct_stats.html#a3c0ec96761b92e70bbb96de0df58cce5">rejectionReasons</a>.<a class="code" href="struct_rejection_reasons.html#ac581f8584a6bc05181a18c9145f2a26e">closeToNode</a> &lt;&lt; <span class="stringliteral">&quot; Close to Node\n&quot;</span>;</div><div class="line"><a name="l00868"></a><span class="lineno">  868</span>&#160;    file &lt;&lt; pstats.<a class="code" href="struct_stats.html#a3c0ec96761b92e70bbb96de0df58cce5">rejectionReasons</a>.<a class="code" href="struct_rejection_reasons.html#adbb08b81bcca27734f30fc8314a48719">closeToEdge</a> &lt;&lt; <span class="stringliteral">&quot; Close to Edge\n&quot;</span>;</div><div class="line"><a name="l00869"></a><span class="lineno">  869</span>&#160;    file &lt;&lt; pstats.<a class="code" href="struct_stats.html#a3c0ec96761b92e70bbb96de0df58cce5">rejectionReasons</a>.<a class="code" href="struct_rejection_reasons.html#a97d5e4f50262ee7f1142fa7a61c81749">closePointToEdge</a> &lt;&lt; <span class="stringliteral">&quot; Vertice Close to Edge\n&quot;</span>;</div><div class="line"><a name="l00870"></a><span class="lineno">  870</span>&#160;    file &lt;&lt; pstats.<a class="code" href="struct_stats.html#a3c0ec96761b92e70bbb96de0df58cce5">rejectionReasons</a>.<a class="code" href="struct_rejection_reasons.html#a64f92b5fcce897497d067d072443dc60">outside</a> &lt;&lt; <span class="stringliteral">&quot; Outside of Domain\n&quot;</span>;</div><div class="line"><a name="l00871"></a><span class="lineno">  871</span>&#160;    file &lt;&lt; pstats.<a class="code" href="struct_stats.html#a3c0ec96761b92e70bbb96de0df58cce5">rejectionReasons</a>.<a class="code" href="struct_rejection_reasons.html#a71e3bcee9eb7d5eb99f60ec8832a8754">triple</a> &lt;&lt; <span class="stringliteral">&quot; Triple intersection Rejections\n&quot;</span>;</div><div class="line"><a name="l00872"></a><span class="lineno">  872</span>&#160;    file &lt;&lt; pstats.<a class="code" href="struct_stats.html#a3c0ec96761b92e70bbb96de0df58cce5">rejectionReasons</a>.<a class="code" href="struct_rejection_reasons.html#a8937dddd46dbdb1731e980500c02e1f3">interCloseToInter</a> &lt;&lt; <span class="stringliteral">&quot; Intersections Close to Other Intersections\n&quot;</span>;</div><div class="line"><a name="l00873"></a><span class="lineno">  873</span>&#160;    </div><div class="line"><a name="l00874"></a><span class="lineno">  874</span>&#160;    file.close();</div><div class="line"><a name="l00875"></a><span class="lineno">  875</span>&#160;}</div><div class="line"><a name="l00876"></a><span class="lineno">  876</span>&#160;</div><div class="line"><a name="l00877"></a><span class="lineno">  877</span>&#160;</div><div class="line"><a name="l00878"></a><span class="lineno">  878</span>&#160;<span class="comment">/* writeShapeFams() ***************************************************************************/</span></div><div class="line"><a name="l00882"></a><span class="lineno"><a class="line" href="output_8h.html#a96b4cdfdb19e66e4996481c31f0e2ed4">  882</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a96b4cdfdb19e66e4996481c31f0e2ed4">writeShapeFams</a>(std::vector&lt;Shape&gt; &amp;shapeFamilies, std::string &amp;output){</div><div class="line"><a name="l00883"></a><span class="lineno">  883</span>&#160;    </div><div class="line"><a name="l00884"></a><span class="lineno">  884</span>&#160;    <span class="keywordtype">double</span> radToDeg = 180 / M_PI;</div><div class="line"><a name="l00885"></a><span class="lineno">  885</span>&#160;</div><div class="line"><a name="l00886"></a><span class="lineno">  886</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;Writing Family Definitions File (families.dat)\n&quot;</span>;</div><div class="line"><a name="l00887"></a><span class="lineno">  887</span>&#160;    std::string fileName = output+<span class="stringliteral">&quot;/families.dat&quot;</span>;</div><div class="line"><a name="l00888"></a><span class="lineno">  888</span>&#160;    std::ofstream file;</div><div class="line"><a name="l00889"></a><span class="lineno">  889</span>&#160;    file.open(fileName.c_str(), std::ofstream::out | std::ofstream::trunc);</div><div class="line"><a name="l00890"></a><span class="lineno">  890</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(file, fileName);</div><div class="line"><a name="l00891"></a><span class="lineno">  891</span>&#160;</div><div class="line"><a name="l00892"></a><span class="lineno">  892</span>&#160;    <span class="keyword">using namespace </span>std;</div><div class="line"><a name="l00893"></a><span class="lineno">  893</span>&#160;</div><div class="line"><a name="l00894"></a><span class="lineno">  894</span>&#160;    <span class="keywordflow">for</span>(<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i &lt; shapeFamilies.size(); i++) {</div><div class="line"><a name="l00895"></a><span class="lineno">  895</span>&#160;</div><div class="line"><a name="l00896"></a><span class="lineno">  896</span>&#160;        <span class="comment">//name(rect or ell) and number of family</span></div><div class="line"><a name="l00897"></a><span class="lineno">  897</span>&#160;        file &lt;&lt; <a class="code" href="insert_shape_8cpp.html#ae4fa66ac2a60ae519ee05168b44c9917">shapeType</a>(shapeFamilies[i]) &lt;&lt; <span class="stringliteral">&quot; Family &quot;</span></div><div class="line"><a name="l00898"></a><span class="lineno">  898</span>&#160;             &lt;&lt; <a class="code" href="insert_shape_8cpp.html#a9b3f632508ac90991bd6ebee7bcfbc2f">getFamilyNumber</a>(i, shapeFamilies[i].shapeFamily) &lt;&lt; <span class="stringliteral">&quot;:\n&quot;</span>;</div><div class="line"><a name="l00899"></a><span class="lineno">  899</span>&#160;</div><div class="line"><a name="l00900"></a><span class="lineno">  900</span>&#160;        file &lt;&lt; <span class="stringliteral">&quot;Global Family &quot;</span> &lt;&lt; i + 1 &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00901"></a><span class="lineno">  901</span>&#160;</div><div class="line"><a name="l00902"></a><span class="lineno">  902</span>&#160;        <span class="comment">// Print vertice number  </span></div><div class="line"><a name="l00903"></a><span class="lineno">  903</span>&#160;        <span class="keywordflow">if</span> (shapeFamilies[i].shapeFamily == 0) {  <span class="comment">// If ellipse family</span></div><div class="line"><a name="l00904"></a><span class="lineno">  904</span>&#160;            file &lt;&lt; <span class="stringliteral">&quot;Number of Vertices: &quot;</span> &lt;&lt; shapeFamilies[i].numPoints &lt;&lt; endl;</div><div class="line"><a name="l00905"></a><span class="lineno">  905</span>&#160;        }</div><div class="line"><a name="l00906"></a><span class="lineno">  906</span>&#160;        <span class="keywordflow">else</span> {</div><div class="line"><a name="l00907"></a><span class="lineno">  907</span>&#160;            file &lt;&lt; <span class="stringliteral">&quot;Number of Vertices: 4&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00908"></a><span class="lineno">  908</span>&#160;        }</div><div class="line"><a name="l00909"></a><span class="lineno">  909</span>&#160;</div><div class="line"><a name="l00910"></a><span class="lineno">  910</span>&#160;        <span class="comment">// aspect ratio</span></div><div class="line"><a name="l00911"></a><span class="lineno">  911</span>&#160;        file &lt;&lt; <span class="stringliteral">&quot;Aspect Ratio: &quot;</span> &lt;&lt; shapeFamilies[i].aspectRatio &lt;&lt; endl;</div><div class="line"><a name="l00912"></a><span class="lineno">  912</span>&#160;</div><div class="line"><a name="l00913"></a><span class="lineno">  913</span>&#160;        <span class="comment">// p32 target </span></div><div class="line"><a name="l00914"></a><span class="lineno">  914</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="input_8h.html#ad47617e2251da4eb87c56365e217c8e3">stopCondition</a> == 1) {</div><div class="line"><a name="l00915"></a><span class="lineno">  915</span>&#160;            file &lt;&lt; <span class="stringliteral">&quot;P32 (Fracture Intensity) Target: &quot;</span></div><div class="line"><a name="l00916"></a><span class="lineno">  916</span>&#160;                 &lt;&lt; shapeFamilies[i].p32Target &lt;&lt; endl;</div><div class="line"><a name="l00917"></a><span class="lineno">  917</span>&#160;        }</div><div class="line"><a name="l00918"></a><span class="lineno">  918</span>&#160;</div><div class="line"><a name="l00919"></a><span class="lineno">  919</span>&#160;        <span class="comment">// beta distribution, rotation around normal vector</span></div><div class="line"><a name="l00920"></a><span class="lineno">  920</span>&#160;        <span class="keywordflow">if</span> (shapeFamilies[i].betaDistribution == 0) {</div><div class="line"><a name="l00921"></a><span class="lineno">  921</span>&#160;            file &lt;&lt; <span class="stringliteral">&quot;Beta Distribution (Rotation Around Normal Vector): [0, 2PI)&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00922"></a><span class="lineno">  922</span>&#160;        }</div><div class="line"><a name="l00923"></a><span class="lineno">  923</span>&#160;        <span class="keywordflow">else</span> {</div><div class="line"><a name="l00924"></a><span class="lineno">  924</span>&#160;            file &lt;&lt; <span class="stringliteral">&quot;Beta (Rotation Around Normal Vector): &quot;</span></div><div class="line"><a name="l00925"></a><span class="lineno">  925</span>&#160;                 &lt;&lt; shapeFamilies[i].beta &lt;&lt; <span class="stringliteral">&quot; rad, &quot;</span> </div><div class="line"><a name="l00926"></a><span class="lineno">  926</span>&#160;                 &lt;&lt; shapeFamilies[i].beta * radToDeg &lt;&lt; <span class="stringliteral">&quot; deg&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00927"></a><span class="lineno">  927</span>&#160;        }</div><div class="line"><a name="l00928"></a><span class="lineno">  928</span>&#160;</div><div class="line"><a name="l00929"></a><span class="lineno">  929</span>&#160;        <span class="comment">// Theta (angle normal makes with z axis</span></div><div class="line"><a name="l00930"></a><span class="lineno">  930</span>&#160;        file &lt;&lt; <span class="stringliteral">&quot;Theta: &quot;</span> &lt;&lt; shapeFamilies[i].theta &lt;&lt; <span class="stringliteral">&quot; rad, &quot;</span> </div><div class="line"><a name="l00931"></a><span class="lineno">  931</span>&#160;             &lt;&lt; shapeFamilies[i].theta * radToDeg &lt;&lt; <span class="stringliteral">&quot; deg&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00932"></a><span class="lineno">  932</span>&#160;</div><div class="line"><a name="l00933"></a><span class="lineno">  933</span>&#160;        <span class="comment">// Phi (angle the projection of normal onto x-y plane  makes with +x axis</span></div><div class="line"><a name="l00934"></a><span class="lineno">  934</span>&#160;        file &lt;&lt; <span class="stringliteral">&quot;Phi: &quot;</span> &lt;&lt; shapeFamilies[i].phi &lt;&lt; <span class="stringliteral">&quot; rad, &quot;</span> </div><div class="line"><a name="l00935"></a><span class="lineno">  935</span>&#160;             &lt;&lt; shapeFamilies[i].phi * radToDeg &lt;&lt; <span class="stringliteral">&quot; deg&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00936"></a><span class="lineno">  936</span>&#160;</div><div class="line"><a name="l00937"></a><span class="lineno">  937</span>&#160;        <span class="comment">// kappa</span></div><div class="line"><a name="l00938"></a><span class="lineno">  938</span>&#160;        file &lt;&lt; <span class="stringliteral">&quot;Kappa: &quot;</span> &lt;&lt; shapeFamilies[i].kappa &lt;&lt; endl;</div><div class="line"><a name="l00939"></a><span class="lineno">  939</span>&#160;</div><div class="line"><a name="l00940"></a><span class="lineno">  940</span>&#160;</div><div class="line"><a name="l00941"></a><span class="lineno">  941</span>&#160;        <span class="comment">// Print layer family belongs to    </span></div><div class="line"><a name="l00942"></a><span class="lineno">  942</span>&#160;        <span class="keywordflow">if</span> (shapeFamilies[i].layer == 0) {</div><div class="line"><a name="l00943"></a><span class="lineno">  943</span>&#160;            file &lt;&lt; <span class="stringliteral">&quot;Layer: Entire domain&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00944"></a><span class="lineno">  944</span>&#160;        }</div><div class="line"><a name="l00945"></a><span class="lineno">  945</span>&#160;        <span class="keywordflow">else</span> {</div><div class="line"><a name="l00946"></a><span class="lineno">  946</span>&#160;            <span class="keywordtype">int</span> idx = (shapeFamilies[i].layer - 1) * 2;</div><div class="line"><a name="l00947"></a><span class="lineno">  947</span>&#160;            file &lt;&lt; <span class="stringliteral">&quot;Layer: &quot;</span> &lt;&lt; shapeFamilies[i].layer &lt;&lt; <span class="stringliteral">&quot; {&quot;</span> &lt;&lt; <a class="code" href="input_8h.html#a03ac7830eb87def8d67cc0c95b24ec82">layers</a>[idx]</div><div class="line"><a name="l00948"></a><span class="lineno">  948</span>&#160;                 &lt;&lt; <span class="stringliteral">&quot;, &quot;</span> &lt;&lt; <a class="code" href="input_8h.html#a03ac7830eb87def8d67cc0c95b24ec82">layers</a>[idx+1]</div><div class="line"><a name="l00949"></a><span class="lineno">  949</span>&#160;                 &lt;&lt; <span class="stringliteral">&quot;}&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00950"></a><span class="lineno">  950</span>&#160;        }</div><div class="line"><a name="l00951"></a><span class="lineno">  951</span>&#160;</div><div class="line"><a name="l00952"></a><span class="lineno">  952</span>&#160;        <span class="comment">// Print distribution data        </span></div><div class="line"><a name="l00953"></a><span class="lineno">  953</span>&#160;        <span class="keywordflow">switch</span> (shapeFamilies[i].distributionType) {</div><div class="line"><a name="l00954"></a><span class="lineno">  954</span>&#160;            <span class="keywordflow">case</span> 1: <span class="comment">// lognormal</span></div><div class="line"><a name="l00955"></a><span class="lineno">  955</span>&#160;                file &lt;&lt; <span class="stringliteral">&quot;Distribution: Lognormal\n&quot;</span>;</div><div class="line"><a name="l00956"></a><span class="lineno">  956</span>&#160;                file &lt;&lt; <span class="stringliteral">&quot;Mean: &quot;</span> &lt;&lt; shapeFamilies[i].mean &lt;&lt; endl;</div><div class="line"><a name="l00957"></a><span class="lineno">  957</span>&#160;                file &lt;&lt; <span class="stringliteral">&quot;Standard Deviation: &quot;</span> &lt;&lt; shapeFamilies[i].sd &lt;&lt;  endl;</div><div class="line"><a name="l00958"></a><span class="lineno">  958</span>&#160;                file &lt;&lt; <span class="stringliteral">&quot;Minimum Radius: &quot;</span> &lt;&lt; shapeFamilies[i].logMin &lt;&lt; <span class="stringliteral">&quot;m&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00959"></a><span class="lineno">  959</span>&#160;                file &lt;&lt; <span class="stringliteral">&quot;Maximum Radius: &quot;</span> &lt;&lt; shapeFamilies[i].logMax &lt;&lt; <span class="stringliteral">&quot;m&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00960"></a><span class="lineno">  960</span>&#160;                <span class="keywordflow">break</span>;</div><div class="line"><a name="l00961"></a><span class="lineno">  961</span>&#160;</div><div class="line"><a name="l00962"></a><span class="lineno">  962</span>&#160;            <span class="keywordflow">case</span> 2: <span class="comment">// power-law</span></div><div class="line"><a name="l00963"></a><span class="lineno">  963</span>&#160;                file &lt;&lt; <span class="stringliteral">&quot;Distribution: Truncated Power-Law\n&quot;</span>;</div><div class="line"><a name="l00964"></a><span class="lineno">  964</span>&#160;                file &lt;&lt; <span class="stringliteral">&quot;Alpha: &quot;</span> &lt;&lt; shapeFamilies[i].alpha &lt;&lt; endl;</div><div class="line"><a name="l00965"></a><span class="lineno">  965</span>&#160;                file &lt;&lt; <span class="stringliteral">&quot;Minimum Radius: &quot;</span> &lt;&lt; shapeFamilies[i].min &lt;&lt; <span class="stringliteral">&quot;m&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00966"></a><span class="lineno">  966</span>&#160;                file &lt;&lt; <span class="stringliteral">&quot;Maximum Radius: &quot;</span> &lt;&lt; shapeFamilies[i].max &lt;&lt; <span class="stringliteral">&quot;m&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00967"></a><span class="lineno">  967</span>&#160;                <span class="keywordflow">break</span>;</div><div class="line"><a name="l00968"></a><span class="lineno">  968</span>&#160;</div><div class="line"><a name="l00969"></a><span class="lineno">  969</span>&#160;            <span class="keywordflow">case</span> 3: <span class="comment">// exponential</span></div><div class="line"><a name="l00970"></a><span class="lineno">  970</span>&#160;                file &lt;&lt; <span class="stringliteral">&quot;Distribution: Exponential\n&quot;</span>;</div><div class="line"><a name="l00971"></a><span class="lineno">  971</span>&#160;                file &lt;&lt; <span class="stringliteral">&quot;Mean: &quot;</span> &lt;&lt; shapeFamilies[i].expMean &lt;&lt; endl;</div><div class="line"><a name="l00972"></a><span class="lineno">  972</span>&#160;                file &lt;&lt; <span class="stringliteral">&quot;Lambda: &quot;</span> &lt;&lt; shapeFamilies[i].expLambda &lt;&lt; endl;</div><div class="line"><a name="l00973"></a><span class="lineno">  973</span>&#160;                file &lt;&lt; <span class="stringliteral">&quot;Minimum Radius: &quot;</span> &lt;&lt; shapeFamilies[i].expMin &lt;&lt; <span class="stringliteral">&quot;m&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00974"></a><span class="lineno">  974</span>&#160;                file &lt;&lt; <span class="stringliteral">&quot;Maximum Radius: &quot;</span> &lt;&lt; shapeFamilies[i].expMax &lt;&lt; <span class="stringliteral">&quot;m&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00975"></a><span class="lineno">  975</span>&#160;                <span class="keywordflow">break</span>;</div><div class="line"><a name="l00976"></a><span class="lineno">  976</span>&#160;</div><div class="line"><a name="l00977"></a><span class="lineno">  977</span>&#160;            <span class="keywordflow">case</span> 4: <span class="comment">// constant</span></div><div class="line"><a name="l00978"></a><span class="lineno">  978</span>&#160;                file &lt;&lt; <span class="stringliteral">&quot;Distribution: Constant\n&quot;</span>;</div><div class="line"><a name="l00979"></a><span class="lineno">  979</span>&#160;                file &lt;&lt; <span class="stringliteral">&quot;Radius: &quot;</span> &lt;&lt; shapeFamilies[i].constRadi &lt;&lt; <span class="stringliteral">&quot;m&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00980"></a><span class="lineno">  980</span>&#160;        }</div><div class="line"><a name="l00981"></a><span class="lineno">  981</span>&#160;        file &lt;&lt; <span class="stringliteral">&quot;Family Insertion Probability: &quot;</span> &lt;&lt; <a class="code" href="input_8h.html#adf0af844c6ea7273c4fdee84e0dda5c2">famProbOriginal</a>[i] &lt;&lt; <span class="stringliteral">&quot;\n\n&quot;</span>;</div><div class="line"><a name="l00982"></a><span class="lineno">  982</span>&#160;    }</div><div class="line"><a name="l00983"></a><span class="lineno">  983</span>&#160;    file.close();</div><div class="line"><a name="l00984"></a><span class="lineno">  984</span>&#160;}</div><div class="line"><a name="l00985"></a><span class="lineno">  985</span>&#160;</div><div class="line"><a name="l00986"></a><span class="lineno">  986</span>&#160;</div><div class="line"><a name="l00987"></a><span class="lineno">  987</span>&#160;<span class="comment">/* makeDIR() **********************************************************************************/</span></div><div class="line"><a name="l00991"></a><span class="lineno"><a class="line" href="output_8h.html#a19e92a0053347549c3bcd6c2cfb196f7">  991</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a19e92a0053347549c3bcd6c2cfb196f7">makeDIR</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *dir) {</div><div class="line"><a name="l00992"></a><span class="lineno">  992</span>&#160;</div><div class="line"><a name="l00993"></a><span class="lineno">  993</span>&#160;    <span class="comment">// If dir already exists, remove it</span></div><div class="line"><a name="l00994"></a><span class="lineno">  994</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="output_8cpp.html#ac931ce8a096fcb6942ed0b2794dd7acc">DIR_exists</a>(dir)) {</div><div class="line"><a name="l00995"></a><span class="lineno">  995</span>&#160;        std::string tempStr = <span class="stringliteral">&quot;rm -r &quot;</span>;</div><div class="line"><a name="l00996"></a><span class="lineno">  996</span>&#160;        tempStr += dir;</div><div class="line"><a name="l00997"></a><span class="lineno">  997</span>&#160;        <span class="keywordflow">if</span> (system(tempStr.c_str())) {</div><div class="line"><a name="l00998"></a><span class="lineno">  998</span>&#160;            std::cout &lt;&lt; <span class="stringliteral">&quot;ERROR: Problem executing system &quot;</span> </div><div class="line"><a name="l00999"></a><span class="lineno">  999</span>&#160;                      &lt;&lt; <span class="stringliteral">&quot;command: &quot;</span> &lt;&lt; tempStr &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l01000"></a><span class="lineno"> 1000</span>&#160;            exit(1);</div><div class="line"><a name="l01001"></a><span class="lineno"> 1001</span>&#160;        }</div><div class="line"><a name="l01002"></a><span class="lineno"> 1002</span>&#160;    }</div><div class="line"><a name="l01003"></a><span class="lineno"> 1003</span>&#160;</div><div class="line"><a name="l01004"></a><span class="lineno"> 1004</span>&#160;    <span class="comment">// If directory doesn&#39;t exist, create it</span></div><div class="line"><a name="l01005"></a><span class="lineno"> 1005</span>&#160;    <span class="keywordflow">if</span> (!<a class="code" href="output_8cpp.html#ac931ce8a096fcb6942ed0b2794dd7acc">DIR_exists</a>(dir)) {</div><div class="line"><a name="l01006"></a><span class="lineno"> 1006</span>&#160;        <span class="keywordtype">int</span> dir_err = mkdir(dir, S_IRWXU | S_IRWXG | S_IROTH | S_IXOTH);</div><div class="line"><a name="l01007"></a><span class="lineno"> 1007</span>&#160;        <span class="keywordflow">if</span> (-1 == dir_err)  {</div><div class="line"><a name="l01008"></a><span class="lineno"> 1008</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;\nError creating directory &quot;</span> &lt;&lt; dir &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l01009"></a><span class="lineno"> 1009</span>&#160;        exit(1);</div><div class="line"><a name="l01010"></a><span class="lineno"> 1010</span>&#160;        }</div><div class="line"><a name="l01011"></a><span class="lineno"> 1011</span>&#160;    }</div><div class="line"><a name="l01012"></a><span class="lineno"> 1012</span>&#160;}</div><div class="line"><a name="l01013"></a><span class="lineno"> 1013</span>&#160;</div><div class="line"><a name="l01014"></a><span class="lineno"> 1014</span>&#160;</div><div class="line"><a name="l01015"></a><span class="lineno"> 1015</span>&#160;<span class="comment">/* writeConnectivity() **********************************************************************************/</span></div><div class="line"><a name="l01021"></a><span class="lineno"><a class="line" href="output_8h.html#a65cbcde44e07cd886ca36467e8fd1bba"> 1021</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a65cbcde44e07cd886ca36467e8fd1bba">writeConnectivity</a>(std::vector&lt;unsigned int&gt; &amp;finalFractures, std::vector&lt;Poly&gt; &amp;acceptedPoly, std::vector&lt;IntPoints&gt; &amp;intPts, std::string &amp;output) {</div><div class="line"><a name="l01022"></a><span class="lineno"> 1022</span>&#160;    </div><div class="line"><a name="l01023"></a><span class="lineno"> 1023</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;Writing Connectivity Data (connectivity.dat)\n&quot;</span>;</div><div class="line"><a name="l01024"></a><span class="lineno"> 1024</span>&#160;    std::string fileName = output + <span class="stringliteral">&quot;/connectivity.dat&quot;</span>;</div><div class="line"><a name="l01025"></a><span class="lineno"> 1025</span>&#160;    std::ofstream file;</div><div class="line"><a name="l01026"></a><span class="lineno"> 1026</span>&#160;    file.open(fileName.c_str(), std::ofstream::out | std::ofstream::trunc);</div><div class="line"><a name="l01027"></a><span class="lineno"> 1027</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(file, fileName);</div><div class="line"><a name="l01028"></a><span class="lineno"> 1028</span>&#160;</div><div class="line"><a name="l01029"></a><span class="lineno"> 1029</span>&#160;    <span class="comment">// Format for connectivity: Line number = poly number, integers on line are intersecting fractures</span></div><div class="line"><a name="l01030"></a><span class="lineno"> 1030</span>&#160;    <span class="comment">//  eg: </span></div><div class="line"><a name="l01031"></a><span class="lineno"> 1031</span>&#160;    <span class="comment">// 2 3 </span></div><div class="line"><a name="l01032"></a><span class="lineno"> 1032</span>&#160;    <span class="comment">// 1 3</span></div><div class="line"><a name="l01033"></a><span class="lineno"> 1033</span>&#160;    <span class="comment">// 1 2</span></div><div class="line"><a name="l01034"></a><span class="lineno"> 1034</span>&#160;    <span class="comment">// Fracture 1 intersects frac 2 and 3, fract 2 intersects 1 and 3 etc</span></div><div class="line"><a name="l01035"></a><span class="lineno"> 1035</span>&#160;</div><div class="line"><a name="l01036"></a><span class="lineno"> 1036</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i &lt; finalFractures.size(); i++) {</div><div class="line"><a name="l01037"></a><span class="lineno"> 1037</span>&#160;    </div><div class="line"><a name="l01038"></a><span class="lineno"> 1038</span>&#160;        <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> size = acceptedPoly[finalFractures[i]].intersectionIndex.size();</div><div class="line"><a name="l01039"></a><span class="lineno"> 1039</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> j = 0; j &lt; size; j++) {</div><div class="line"><a name="l01040"></a><span class="lineno"> 1040</span>&#160;            <span class="keywordtype">long</span> <span class="keywordtype">int</span> intIdx = acceptedPoly[finalFractures[i]].intersectionIndex[j];</div><div class="line"><a name="l01041"></a><span class="lineno"> 1041</span>&#160;            <span class="comment">// Don&#39;t write fractures own fracture ID </span></div><div class="line"><a name="l01042"></a><span class="lineno"> 1042</span>&#160;</div><div class="line"><a name="l01043"></a><span class="lineno"> 1043</span>&#160;            <span class="comment">// NOTE: At this stage in the program, the fracture ID&#39;s have been changed to </span></div><div class="line"><a name="l01044"></a><span class="lineno"> 1044</span>&#160;            <span class="comment">// negative. See &#39;adjustIntFractIds()&#39; for more details.</span></div><div class="line"><a name="l01045"></a><span class="lineno"> 1045</span>&#160;            <span class="comment">// Use &#39;-&#39; to make them positive again.</span></div><div class="line"><a name="l01046"></a><span class="lineno"> 1046</span>&#160;       </div><div class="line"><a name="l01047"></a><span class="lineno"> 1047</span>&#160;            <span class="keywordflow">if</span> (finalFractures[i]+1 != -intPts[intIdx].fract1) {</div><div class="line"><a name="l01048"></a><span class="lineno"> 1048</span>&#160;                file &lt;&lt; -intPts[intIdx].fract1 &lt;&lt; <span class="stringliteral">&quot; &quot;</span>;</div><div class="line"><a name="l01049"></a><span class="lineno"> 1049</span>&#160;            }</div><div class="line"><a name="l01050"></a><span class="lineno"> 1050</span>&#160;            <span class="keywordflow">else</span> {</div><div class="line"><a name="l01051"></a><span class="lineno"> 1051</span>&#160; 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&amp;acceptedPoly, std::vector&lt;unsigned int&gt; &amp;finalFractures, std::vector&lt;Shape&gt; &amp;shapeFamilies, std::string output) {</div><div class="line"><a name="l01068"></a><span class="lineno"> 1068</span>&#160;</div><div class="line"><a name="l01069"></a><span class="lineno"> 1069</span>&#160;    std::ofstream file;</div><div class="line"><a name="l01070"></a><span class="lineno"> 1070</span>&#160;    std::string fileOutputFile = output+<span class="stringliteral">&quot;/poly_info.dat&quot;</span>;</div><div class="line"><a name="l01071"></a><span class="lineno"> 1071</span>&#160;    file.open(fileOutputFile.c_str(), std::ofstream::out | std::ofstream::trunc);</div><div class="line"><a name="l01072"></a><span class="lineno"> 1072</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(file, fileOutputFile);</div><div class="line"><a name="l01073"></a><span class="lineno"> 1073</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;Writing Rotation Data File (poly_info.dat)\n&quot;</span>;</div><div class="line"><a name="l01074"></a><span class="lineno"> 1074</span>&#160;</div><div class="line"><a name="l01075"></a><span class="lineno"> 1075</span>&#160;        <span class="keywordtype">double</span> maxDomainSize = <a class="code" href="input_8h.html#a5cd62663cb067d79183d8de4dd0224db">domainSize</a>[0];</div><div class="line"><a name="l01076"></a><span class="lineno"> 1076</span>&#160;        <span class="keywordflow">if</span> (maxDomainSize &lt; <a class="code" href="input_8h.html#a5cd62663cb067d79183d8de4dd0224db">domainSize</a>[1]) {</div><div class="line"><a name="l01077"></a><span class="lineno"> 1077</span>&#160;            maxDomainSize = <a class="code" href="input_8h.html#a5cd62663cb067d79183d8de4dd0224db">domainSize</a>[1];</div><div class="line"><a name="l01078"></a><span class="lineno"> 1078</span>&#160;        }</div><div class="line"><a name="l01079"></a><span class="lineno"> 1079</span>&#160; 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       <span class="comment">// rad to deg</span></div><div class="line"><a name="l01094"></a><span class="lineno"> 1094</span>&#160;        theta = theta * (180/M_PI);</div><div class="line"><a name="l01095"></a><span class="lineno"> 1095</span>&#160;    </div><div class="line"><a name="l01096"></a><span class="lineno"> 1096</span>&#160;        <span class="comment">// Rotation into xy plane</span></div><div class="line"><a name="l01097"></a><span class="lineno"> 1097</span>&#160;        <span class="keywordtype">double</span> *v = <a class="code" href="vector_functions_8h.html#a94303b1c8dd36d71e57fd0e4d5d26ae3">crossProduct</a>(e3, normal);</div><div class="line"><a name="l01098"></a><span class="lineno"> 1098</span>&#160;        <span class="keywordflow">if</span> (!(std::abs(v[0]) &lt; <a class="code" href="_d_f_nmain_8cpp.html#a974b448c3d0a13d483d36ef15de369b5">eps</a> &amp;&amp; std::abs(v[1]) &lt; <a class="code" href="_d_f_nmain_8cpp.html#a974b448c3d0a13d483d36ef15de369b5">eps</a> &amp;&amp; std::abs(v[2]) &lt; <a class="code" href="_d_f_nmain_8cpp.html#a974b448c3d0a13d483d36ef15de369b5">eps</a>)){ <span class="comment">//if not zero vector</span></div><div class="line"><a name="l01099"></a><span class="lineno"> 1099</span>&#160;            <a class="code" href="vector_functions_8h.html#a48bb00fc4195377b229efe044f3bb67e">normalize</a>(v);</div><div class="line"><a name="l01100"></a><span class="lineno"> 1100</span>&#160;        }</div><div class="line"><a name="l01101"></a><span class="lineno"> 1101</span>&#160;        </div><div class="line"><a name="l01102"></a><span class="lineno"> 1102</span>&#160;                </div><div class="line"><a name="l01103"></a><span class="lineno"> 1103</span>&#160;        <span class="keywordtype">double</span> x0 = (-maxDomainSize*v[0]);</div><div class="line"><a name="l01104"></a><span class="lineno"> 1104</span>&#160;        <span class="keywordtype">double</span> y0 = (-maxDomainSize*v[1]);</div><div class="line"><a name="l01105"></a><span class="lineno"> 1105</span>&#160;        <span class="keywordtype">double</span> z0 = (-maxDomainSize*v[2]);</div><div class="line"><a name="l01106"></a><span class="lineno"> 1106</span>&#160;        </div><div class="line"><a name="l01107"></a><span class="lineno"> 1107</span>&#160;        <span class="keywordtype">double</span> x1 = maxDomainSize*v[0];</div><div class="line"><a name="l01108"></a><span class="lineno"> 1108</span>&#160;        <span class="keywordtype">double</span> y1 = maxDomainSize*v[1];</div><div class="line"><a name="l01109"></a><span class="lineno"> 1109</span>&#160;        <span class="keywordtype">double</span> z1 = maxDomainSize*v[2];    </div><div class="line"><a name="l01110"></a><span class="lineno"> 1110</span>&#160;    </div><div class="line"><a name="l01111"></a><span class="lineno"> 1111</span>&#160;        </div><div class="line"><a name="l01112"></a><span class="lineno"> 1112</span>&#160;        <span class="comment">// The last number is the shape family number. Throughout this program,</span></div><div class="line"><a name="l01113"></a><span class="lineno"> 1113</span>&#160;        <span class="comment">// -1 and -2 are used to denote user defined ell. and rectangles.</span></div><div class="line"><a name="l01114"></a><span class="lineno"> 1114</span>&#160;        <span class="comment">// -1 and -2 are not good numbers to use as material IDs in Lagrit.</span></div><div class="line"><a name="l01115"></a><span class="lineno"> 1115</span>&#160;        <span class="comment">// If the family number is -1 or -2 we change these numbers to be</span></div><div class="line"><a name="l01116"></a><span class="lineno"> 1116</span>&#160;        <span class="comment">// number of stochastic families + 1 and number of stochastic families + 2</span></div><div class="line"><a name="l01117"></a><span class="lineno"> 1117</span>&#160;        <span class="keywordtype">int</span> famNum;</div><div class="line"><a name="l01118"></a><span class="lineno"> 1118</span>&#160;        <span class="keywordflow">if</span> (acceptedPoly[finalFractures[i]].familyNum == -1) {</div><div class="line"><a name="l01119"></a><span class="lineno"> 1119</span>&#160;            famNum = shapeFamilies.size() + 1;</div><div class="line"><a name="l01120"></a><span class="lineno"> 1120</span>&#160;        }</div><div class="line"><a name="l01121"></a><span class="lineno"> 1121</span>&#160;        <span class="keywordflow">else</span> <span class="keywordflow">if</span> (acceptedPoly[finalFractures[i]].familyNum == -2) {</div><div class="line"><a name="l01122"></a><span class="lineno"> 1122</span>&#160;            famNum = shapeFamilies.size() + 2;</div><div class="line"><a name="l01123"></a><span class="lineno"> 1123</span>&#160;        }</div><div class="line"><a name="l01124"></a><span class="lineno"> 1124</span>&#160;        <span class="keywordflow">else</span> {</div><div class="line"><a name="l01125"></a><span class="lineno"> 1125</span>&#160;            famNum = acceptedPoly[finalFractures[i]].familyNum + 1;</div><div class="line"><a name="l01126"></a><span class="lineno"> 1126</span>&#160;        }</div><div class="line"><a name="l01127"></a><span class="lineno"> 1127</span>&#160;</div><div class="line"><a name="l01128"></a><span class="lineno"> 1128</span>&#160;        <span class="comment">// Format: fracture#, x0, y0, z0, x1, y1, z1, family#</span></div><div class="line"><a name="l01129"></a><span class="lineno"> 1129</span>&#160;        file &lt;&lt; (i+1) &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; famNum &lt;&lt; std::setprecision(15) &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; theta &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; x0 </div><div class="line"><a name="l01130"></a><span class="lineno"> 1130</span>&#160;               &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; y0 &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; z0 &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; x1 &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; y1 &lt;&lt; <span class="stringliteral">&quot; &quot;</span> &lt;&lt; z1 &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l01131"></a><span class="lineno"> 1131</span>&#160;</div><div class="line"><a name="l01132"></a><span class="lineno"> 1132</span>&#160;        <span class="keyword">delete</span>[] v;</div><div class="line"><a name="l01133"></a><span class="lineno"> 1133</span>&#160;    }    </div><div class="line"><a name="l01134"></a><span class="lineno"> 1134</span>&#160;    file.close();</div><div class="line"><a name="l01135"></a><span class="lineno"> 1135</span>&#160;}</div><div class="line"><a name="l01136"></a><span class="lineno"> 1136</span>&#160;</div><div class="line"><a name="l01137"></a><span class="lineno"> 1137</span>&#160;</div><div class="line"><a name="l01138"></a><span class="lineno"> 1138</span>&#160;<span class="comment">/* writeRejectsPerAttempt()**************************************************************************/</span></div><div class="line"><a name="l01147"></a><span class="lineno"><a class="line" href="output_8h.html#a8aa48d2a57afeb6e59069ac0a8a5f9cc"> 1147</a></span>&#160;<span class="keywordtype">void</span> <a class="code" href="output_8cpp.html#a8aa48d2a57afeb6e59069ac0a8a5f9cc">writeRejectsPerAttempt</a>(<a class="code" href="struct_stats.html">Stats</a> &amp;pstats, std::string &amp;output) {</div><div class="line"><a name="l01148"></a><span class="lineno"> 1148</span>&#160;</div><div class="line"><a name="l01149"></a><span class="lineno"> 1149</span>&#160;    std::ofstream file;</div><div class="line"><a name="l01150"></a><span class="lineno"> 1150</span>&#160;    std::string fileOutputFile = output+<span class="stringliteral">&quot;/rejectsPerAttempt.dat&quot;</span>;</div><div class="line"><a name="l01151"></a><span class="lineno"> 1151</span>&#160;    file.open(fileOutputFile.c_str(), std::ofstream::out | std::ofstream::trunc);</div><div class="line"><a name="l01152"></a><span class="lineno"> 1152</span>&#160;    <a class="code" href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a>(file, fileOutputFile);</div><div class="line"><a name="l01153"></a><span class="lineno"> 1153</span>&#160;    std::cout &lt;&lt; <span class="stringliteral">&quot;Writing Rotation Data File (rejectsPerAttempt.dat)\n&quot;</span>;</div><div class="line"><a name="l01154"></a><span class="lineno"> 1154</span>&#160; </div><div class="line"><a name="l01155"></a><span class="lineno"> 1155</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i &lt; pstats.<a class="code" href="struct_stats.html#ae2c4ebee5152b67185fc4932fa6cca22">rejectsPerAttempt</a>.size(); i++) {</div><div class="line"><a name="l01156"></a><span class="lineno"> 1156</span>&#160;</div><div class="line"><a name="l01157"></a><span class="lineno"> 1157</span>&#160;        file &lt;&lt; pstats.<a class="code" href="struct_stats.html#ae2c4ebee5152b67185fc4932fa6cca22">rejectsPerAttempt</a>[i] &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l01158"></a><span class="lineno"> 1158</span>&#160;    }</div><div class="line"><a name="l01159"></a><span class="lineno"> 1159</span>&#160;</div><div class="line"><a name="l01160"></a><span class="lineno"> 1160</span>&#160;    file.close();</div><div class="line"><a name="l01161"></a><span class="lineno"> 1161</span>&#160;}</div><div class="line"><a name="l01162"></a><span class="lineno"> 1162</span>&#160;</div><div class="line"><a name="l01163"></a><span class="lineno"> 1163</span>&#160;</div><div class="line"><a name="l01164"></a><span class="lineno"> 1164</span>&#160;</div><div class="line"><a name="l01165"></a><span class="lineno"> 1165</span>&#160;</div><div class="line"><a name="l01166"></a><span class="lineno"> 1166</span>&#160;</div><div class="line"><a name="l01167"></a><span class="lineno"> 1167</span>&#160;</div><div class="line"><a name="l01168"></a><span class="lineno"> 1168</span>&#160;</div><div class="line"><a name="l01169"></a><span class="lineno"> 1169</span>&#160;</div><div class="ttc" id="vector_functions_8cpp_html_af04ebdcbe44a303101290e88a5971c71"><div class="ttname"><a href="vector_functions_8cpp.html#af04ebdcbe44a303101290e88a5971c71">euclideanDistance</a></div><div class="ttdeci">double euclideanDistance(double *A, double *B)</div><div class="ttdef"><b>Definition:</b> <a href="vector_functions_8cpp_source.html#l00046">vectorFunctions.cpp:46</a></div></div>
<div class="ttc" id="computational_geometry_8h_html"><div class="ttname"><a href="computational_geometry_8h.html">computationalGeometry.h</a></div></div>
<div class="ttc" id="computational_geometry_8cpp_html_a06628fbaa79aad7eec7a74c5341e77bd"><div class="ttname"><a href="computational_geometry_8cpp.html#a06628fbaa79aad7eec7a74c5341e77bd">polyAndIntersection_RotationToXY</a></div><div class="ttdeci">struct IntPoints polyAndIntersection_RotationToXY(struct IntPoints &amp;intersection, Poly &amp;newPoly, std::vector&lt; Point &gt; &amp;triplePoints, std::vector&lt; Point &gt; &amp;tempTripPts)</div><div class="ttdef"><b>Definition:</b> <a href="computational_geometry_8cpp_source.html#l00207">computationalGeometry.cpp:207</a></div></div>
<div class="ttc" id="output_8h_html"><div class="ttname"><a href="output_8h.html">output.h</a></div></div>
<div class="ttc" id="vector_functions_8h_html_a48bb00fc4195377b229efe044f3bb67e"><div class="ttname"><a href="vector_functions_8h.html#a48bb00fc4195377b229efe044f3bb67e">normalize</a></div><div class="ttdeci">void normalize(T *vec)</div><div class="ttdef"><b>Definition:</b> <a href="vector_functions_8h_source.html#l00036">vectorFunctions.h:36</a></div></div>
<div class="ttc" id="input_8h_html"><div class="ttname"><a href="input_8h.html">input.h</a></div></div>
<div class="ttc" id="output_8cpp_html_abbff4246d763bc6aaa86ce9baa5f1de9"><div class="ttname"><a href="output_8cpp.html#abbff4246d763bc6aaa86ce9baa5f1de9">writeFractureTranslations</a></div><div class="ttdeci">void writeFractureTranslations(std::vector&lt; unsigned int &gt; &amp;finalFractures, std::vector&lt; Poly &gt; &amp;acceptedPoly, std::string &amp;output)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00659">output.cpp:659</a></div></div>
<div class="ttc" id="output_8cpp_html_a5a3e3e3566cdf38d5e17abbc9c5f8d7d"><div class="ttname"><a href="output_8cpp.html#a5a3e3e3566cdf38d5e17abbc9c5f8d7d">writeRadiiFile</a></div><div class="ttdeci">void writeRadiiFile(std::vector&lt; unsigned int &gt; &amp;finalFractures, std::vector&lt; Poly &gt; &amp;acceptedPoly, std::string &amp;output)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00617">output.cpp:617</a></div></div>
<div class="ttc" id="math_functions_8cpp_html_a50249713d75d2446b44572f47cc0c560"><div class="ttname"><a href="math_functions_8cpp.html#a50249713d75d2446b44572f47cc0c560">sortedIndex</a></div><div class="ttdeci">int * sortedIndex(const double *v, int n)</div><div class="ttdef"><b>Definition:</b> <a href="math_functions_8cpp_source.html#l00088">mathFunctions.cpp:88</a></div></div>
<div class="ttc" id="struct_rejection_reasons_html_ab935b00ed9bf36d47d435a3f4fbd328d"><div class="ttname"><a href="struct_rejection_reasons.html#ab935b00ed9bf36d47d435a3f4fbd328d">RejectionReasons::shortIntersection</a></div><div class="ttdeci">unsigned long long int shortIntersection</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00252">structures.h:252</a></div></div>
<div class="ttc" id="struct_rejection_reasons_html_ac581f8584a6bc05181a18c9145f2a26e"><div class="ttname"><a href="struct_rejection_reasons.html#ac581f8584a6bc05181a18c9145f2a26e">RejectionReasons::closeToNode</a></div><div class="ttdeci">unsigned long long int closeToNode</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00255">structures.h:255</a></div></div>
<div class="ttc" id="struct_rejection_reasons_html_adbb08b81bcca27734f30fc8314a48719"><div class="ttname"><a href="struct_rejection_reasons.html#adbb08b81bcca27734f30fc8314a48719">RejectionReasons::closeToEdge</a></div><div class="ttdeci">unsigned long long int closeToEdge</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00258">structures.h:258</a></div></div>
<div class="ttc" id="output_8cpp_html_a79e5f6f87216f01ab2c692e4be77802b"><div class="ttname"><a href="output_8cpp.html#a79e5f6f87216f01ab2c692e4be77802b">writeApertureFile</a></div><div class="ttdeci">void writeApertureFile(std::vector&lt; unsigned int &gt; &amp;finalFractures, std::vector&lt; Poly &gt; &amp;acceptedPoly, std::string &amp;output)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00573">output.cpp:573</a></div></div>
<div class="ttc" id="struct_rejection_reasons_html_a71e3bcee9eb7d5eb99f60ec8832a8754"><div class="ttname"><a href="struct_rejection_reasons.html#a71e3bcee9eb7d5eb99f60ec8832a8754">RejectionReasons::triple</a></div><div class="ttdeci">unsigned long long int triple</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00264">structures.h:264</a></div></div>
<div class="ttc" id="struct_int_points_html_a03e871983902c49f6b18dd6d5e71a3f3"><div class="ttname"><a href="struct_int_points.html#a03e871983902c49f6b18dd6d5e71a3f3">IntPoints::x2</a></div><div class="ttdeci">double x2</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00148">structures.h:148</a></div></div>
<div class="ttc" id="_d_f_nmain_8cpp_html_a974b448c3d0a13d483d36ef15de369b5"><div class="ttname"><a href="_d_f_nmain_8cpp.html#a974b448c3d0a13d483d36ef15de369b5">eps</a></div><div class="ttdeci">double eps</div><div class="ttdef"><b>Definition:</b> <a href="_d_f_nmain_8cpp_source.html#l00039">DFNmain.cpp:39</a></div></div>
<div class="ttc" id="struct_rejection_reasons_html_a8937dddd46dbdb1731e980500c02e1f3"><div class="ttname"><a href="struct_rejection_reasons.html#a8937dddd46dbdb1731e980500c02e1f3">RejectionReasons::interCloseToInter</a></div><div class="ttdeci">unsigned long long int interCloseToInter</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00267">structures.h:267</a></div></div>
<div class="ttc" id="struct_point_html"><div class="ttname"><a href="struct_point.html">Point</a></div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00111">structures.h:111</a></div></div>
<div class="ttc" id="struct_int_points_html_a899541257522a3746d9883113864a0c1"><div class="ttname"><a href="struct_int_points.html#a899541257522a3746d9883113864a0c1">IntPoints::y2</a></div><div class="ttdeci">double y2</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00150">structures.h:150</a></div></div>
<div class="ttc" id="input_8h_html_adf0af844c6ea7273c4fdee84e0dda5c2"><div class="ttname"><a href="input_8h.html#adf0af844c6ea7273c4fdee84e0dda5c2">famProbOriginal</a></div><div class="ttdeci">float * famProbOriginal</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00137">readInput.cpp:137</a></div></div>
<div class="ttc" id="struct_point_html_afa38be143ae800e6ad69ce8ed4df62d8"><div class="ttname"><a href="struct_point.html#afa38be143ae800e6ad69ce8ed4df62d8">Point::y</a></div><div class="ttdeci">double y</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00113">structures.h:113</a></div></div>
<div class="ttc" id="vector_functions_8h_html"><div class="ttname"><a href="vector_functions_8h.html">vectorFunctions.h</a></div></div>
<div class="ttc" id="insert_shape_8cpp_html_ae4fa66ac2a60ae519ee05168b44c9917"><div class="ttname"><a href="insert_shape_8cpp.html#ae4fa66ac2a60ae519ee05168b44c9917">shapeType</a></div><div class="ttdeci">std::string shapeType(struct Shape &amp;shapeFam)</div><div class="ttdef"><b>Definition:</b> <a href="insert_shape_8cpp_source.html#l00700">insertShape.cpp:700</a></div></div>
<div class="ttc" id="output_8cpp_html_ae4eaf0ac5f6d6af694f8c276bfbcc8ac"><div class="ttname"><a href="output_8cpp.html#ae4eaf0ac5f6d6af694f8c276bfbcc8ac">writeRejectionStats</a></div><div class="ttdeci">void writeRejectionStats(Stats &amp;pstats, std::string &amp;output)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00859">output.cpp:859</a></div></div>
<div class="ttc" id="structures_8h_html"><div class="ttname"><a href="structures_8h.html">structures.h</a></div></div>
<div class="ttc" id="output_8cpp_html_a05f2f6fb056bf06f18530445383e53d1"><div class="ttname"><a href="output_8cpp.html#a05f2f6fb056bf06f18530445383e53d1">rotateFractures</a></div><div class="ttdeci">void rotateFractures(std::vector&lt; unsigned int &gt; &amp;finalFractures, std::vector&lt; Poly &gt; &amp;acceptedPoly)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00437">output.cpp:437</a></div></div>
<div class="ttc" id="struct_int_points_html_af2d7aa1594ac5c1a10de6bef0a5bee49"><div class="ttname"><a href="struct_int_points.html#af2d7aa1594ac5c1a10de6bef0a5bee49">IntPoints::y1</a></div><div class="ttdeci">double y1</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00144">structures.h:144</a></div></div>
<div class="ttc" id="output_8cpp_html_a5ae0b1fd93e78fd4efc7031d70af5457"><div class="ttname"><a href="output_8cpp.html#a5ae0b1fd93e78fd4efc7031d70af5457">writeFinalRadii_OfFamily</a></div><div class="ttdeci">void writeFinalRadii_OfFamily(std::vector&lt; unsigned int &gt; &amp;finalFractures, int familyNum, std::vector&lt; Poly &gt; &amp;acceptedPoly, std::string &amp;output)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00772">output.cpp:772</a></div></div>
<div class="ttc" id="input_8h_html_ab963e6ee0512d7651d002947e0bfd1df"><div class="ttname"><a href="input_8h.html#ab963e6ee0512d7651d002947e0bfd1df">userRectanglesOnOff</a></div><div class="ttdeci">bool userRectanglesOnOff</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00336">readInput.cpp:336</a></div></div>
<div class="ttc" id="struct_int_points_html_ad190f9e3aeb919a03d16baedbd108aa4"><div class="ttname"><a href="struct_int_points.html#ad190f9e3aeb919a03d16baedbd108aa4">IntPoints::z2</a></div><div class="ttdeci">double z2</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00152">structures.h:152</a></div></div>
<div class="ttc" id="output_8cpp_html_a28380919d0aa1bbe73f57221118b948b"><div class="ttname"><a href="output_8cpp.html#a28380919d0aa1bbe73f57221118b948b">writePermFile</a></div><div class="ttdeci">void writePermFile(std::vector&lt; unsigned int &gt; &amp;finalFractures, std::vector&lt; Poly &gt; &amp;acceptedPoly, std::string &amp;output)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00594">output.cpp:594</a></div></div>
<div class="ttc" id="input_8h_html_a66471dd0571be27dea62906d930ef883"><div class="ttname"><a href="input_8h.html#a66471dd0571be27dea62906d930ef883">outputAcceptedRadiiPerFamily</a></div><div class="ttdeci">bool outputAcceptedRadiiPerFamily</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00082">readInput.cpp:82</a></div></div>
<div class="ttc" id="struct_int_points_html_aabd621fc15cbe6fd9cd8343b020d292a"><div class="ttname"><a href="struct_int_points.html#aabd621fc15cbe6fd9cd8343b020d292a">IntPoints::z1</a></div><div class="ttdeci">double z1</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00146">structures.h:146</a></div></div>
<div class="ttc" id="struct_stats_html_a3c0ec96761b92e70bbb96de0df58cce5"><div class="ttname"><a href="struct_stats.html#a3c0ec96761b92e70bbb96de0df58cce5">Stats::rejectionReasons</a></div><div class="ttdeci">struct RejectionReasons rejectionReasons</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00339">structures.h:339</a></div></div>
<div class="ttc" id="output_8cpp_html_a3b48e92dd0af09b7f288339c78b831d2"><div class="ttname"><a href="output_8cpp.html#a3b48e92dd0af09b7f288339c78b831d2">writeAllAcceptedRadii</a></div><div class="ttdeci">void writeAllAcceptedRadii(std::vector&lt; Poly &gt; &amp;acceptedPoly, std::string &amp;output)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00723">output.cpp:723</a></div></div>
<div class="ttc" id="input_8h_html_a03ac7830eb87def8d67cc0c95b24ec82"><div class="ttname"><a href="input_8h.html#a03ac7830eb87def8d67cc0c95b24ec82">layers</a></div><div class="ttdeci">float * layers</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00443">readInput.cpp:443</a></div></div>
<div class="ttc" id="output_8cpp_html_a65cbcde44e07cd886ca36467e8fd1bba"><div class="ttname"><a href="output_8cpp.html#a65cbcde44e07cd886ca36467e8fd1bba">writeConnectivity</a></div><div class="ttdeci">void writeConnectivity(std::vector&lt; unsigned int &gt; &amp;finalFractures, std::vector&lt; Poly &gt; &amp;acceptedPoly, std::vector&lt; IntPoints &gt; &amp;intPts, std::string &amp;output)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l01021">output.cpp:1021</a></div></div>
<div class="ttc" id="math_functions_8h_html"><div class="ttname"><a href="math_functions_8h.html">mathFunctions.h</a></div></div>
<div class="ttc" id="output_8cpp_html_a28522d95b2cb41e475acf0136cc6a58e"><div class="ttname"><a href="output_8cpp.html#a28522d95b2cb41e475acf0136cc6a58e">writeIntersectionFiles</a></div><div class="ttdeci">void writeIntersectionFiles(std::vector&lt; unsigned int &gt; &amp;finalFractures, std::vector&lt; Poly &gt; &amp;acceptedPoly, std::vector&lt; IntPoints &gt; &amp;intPts, std::vector&lt; Point &gt; &amp;triplePoints, std::string intersectionFolder, struct Stats &amp;pstats)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00248">output.cpp:248</a></div></div>
<div class="ttc" id="input_8h_html_af93cb3f9ec0bb2490e0c2219b15aa1cf"><div class="ttname"><a href="input_8h.html#af93cb3f9ec0bb2490e0c2219b15aa1cf">userEllipsesOnOff</a></div><div class="ttdeci">bool userEllipsesOnOff</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00306">readInput.cpp:306</a></div></div>
<div class="ttc" id="struct_rejection_reasons_html_a97d5e4f50262ee7f1142fa7a61c81749"><div class="ttname"><a href="struct_rejection_reasons.html#a97d5e4f50262ee7f1142fa7a61c81749">RejectionReasons::closePointToEdge</a></div><div class="ttdeci">unsigned long long int closePointToEdge</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00260">structures.h:260</a></div></div>
<div class="ttc" id="struct_stats_html_a84c9fecbd7e80b7cf93b185952618062"><div class="ttname"><a href="struct_stats.html#a84c9fecbd7e80b7cf93b185952618062">Stats::intersectionNodeCount</a></div><div class="ttdeci">unsigned int intersectionNodeCount</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00358">structures.h:358</a></div></div>
<div class="ttc" id="input_8h_html_abc39a0cf64740d1080e5c9867191fa0e"><div class="ttname"><a href="input_8h.html#abc39a0cf64740d1080e5c9867191fa0e">aperture</a></div><div class="ttdeci">int aperture</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00413">readInput.cpp:413</a></div></div>
<div class="ttc" id="output_8cpp_html_a19629adecaacde4ddd07e983743802d2"><div class="ttname"><a href="output_8cpp.html#a19629adecaacde4ddd07e983743802d2">writeParamsFile</a></div><div class="ttdeci">void writeParamsFile(std::vector&lt; unsigned int &gt; &amp;finalFractures, std::vector&lt; Poly &gt; &amp;acceptedPoly, std::vector&lt; Shape &gt; &amp;shapeFamilies, Stats &amp;pstats, std::vector&lt; Point &gt; &amp;triplePoints, std::string &amp;output)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00551">output.cpp:551</a></div></div>
<div class="ttc" id="input_8h_html_a1c0f1e135986f63c343fac357913481f"><div class="ttname"><a href="input_8h.html#a1c0f1e135986f63c343fac357913481f">outputFinalRadiiPerFamily</a></div><div class="ttdeci">bool outputFinalRadiiPerFamily</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00074">readInput.cpp:74</a></div></div>
<div class="ttc" id="output_8cpp_html_ac931ce8a096fcb6942ed0b2794dd7acc"><div class="ttname"><a href="output_8cpp.html#ac931ce8a096fcb6942ed0b2794dd7acc">DIR_exists</a></div><div class="ttdeci">bool DIR_exists(const char *path)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00193">output.cpp:193</a></div></div>
<div class="ttc" id="struct_point_html_ab99c56589bc8ad5fa5071387110a5bc7"><div class="ttname"><a href="struct_point.html#ab99c56589bc8ad5fa5071387110a5bc7">Point::x</a></div><div class="ttdeci">double x</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00112">structures.h:112</a></div></div>
<div class="ttc" id="struct_rejection_reasons_html_a64f92b5fcce897497d067d072443dc60"><div class="ttname"><a href="struct_rejection_reasons.html#a64f92b5fcce897497d067d072443dc60">RejectionReasons::outside</a></div><div class="ttdeci">unsigned long long int outside</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00262">structures.h:262</a></div></div>
<div class="ttc" id="output_8cpp_html_a631030ad68c4db16e85d6aaafa50f753"><div class="ttname"><a href="output_8cpp.html#a631030ad68c4db16e85d6aaafa50f753">writeFinalPolyRadii</a></div><div class="ttdeci">void writeFinalPolyRadii(std::vector&lt; unsigned int &gt; &amp;finalFractures, std::vector&lt; Poly &gt; &amp;acceptedPoly, std::string &amp;output)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00699">output.cpp:699</a></div></div>
<div class="ttc" id="insert_shape_8cpp_html_a9b3f632508ac90991bd6ebee7bcfbc2f"><div class="ttname"><a href="insert_shape_8cpp.html#a9b3f632508ac90991bd6ebee7bcfbc2f">getFamilyNumber</a></div><div class="ttdeci">int getFamilyNumber(int familyIndex, int familyShape)</div><div class="ttdef"><b>Definition:</b> <a href="insert_shape_8cpp_source.html#l00688">insertShape.cpp:688</a></div></div>
<div class="ttc" id="struct_stats_html_ae2c4ebee5152b67185fc4932fa6cca22"><div class="ttname"><a href="struct_stats.html#ae2c4ebee5152b67185fc4932fa6cca22">Stats::rejectsPerAttempt</a></div><div class="ttdeci">std::vector&lt; unsigned int &gt; rejectsPerAttempt</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00371">structures.h:371</a></div></div>
<div class="ttc" id="generating_points_8h_html"><div class="ttname"><a href="generating_points_8h.html">generatingPoints.h</a></div></div>
<div class="ttc" id="computational_geometry_8cpp_html_af7f1ba8a57908229078780a2695e4e46"><div class="ttname"><a href="computational_geometry_8cpp.html#af7f1ba8a57908229078780a2695e4e46">applyRotation3D</a></div><div class="ttdeci">void applyRotation3D(Poly &amp;newPoly, double *normalB)</div><div class="ttdef"><b>Definition:</b> <a href="computational_geometry_8cpp_source.html#l00147">computationalGeometry.cpp:147</a></div></div>
<div class="ttc" id="output_8cpp_html_ad84815b625587d2194321694a13f2477"><div class="ttname"><a href="output_8cpp.html#ad84815b625587d2194321694a13f2477">writeOutput</a></div><div class="ttdeci">void writeOutput(char *outputFolder, std::vector&lt; Poly &gt; &amp;acceptedPoly, std::vector&lt; IntPoints &gt; &amp;intPts, std::vector&lt; Point &gt; &amp;triplePoints, struct Stats &amp;pstats, std::vector&lt; unsigned int &gt; &amp;finalFractures, std::vector&lt; Shape &gt; &amp;shapeFamilies)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00031">output.cpp:31</a></div></div>
<div class="ttc" id="output_8cpp_html_aa1811bfba84e52254a8193a2fd9572b9"><div class="ttname"><a href="output_8cpp.html#aa1811bfba84e52254a8193a2fd9572b9">writePolysInp</a></div><div class="ttdeci">void writePolysInp(std::vector&lt; unsigned int &gt; &amp;finalFractures, std::vector&lt; Poly &gt; &amp;acceptedPoly, std::string &amp;output)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00510">output.cpp:510</a></div></div>
<div class="ttc" id="insert_shape_8h_html"><div class="ttname"><a href="insert_shape_8h.html">insertShape.h</a></div></div>
<div class="ttc" id="input_8h_html_aa0b6ecd1182eec9769b157aa8387e32c"><div class="ttname"><a href="input_8h.html#aa0b6ecd1182eec9769b157aa8387e32c">tripleIntersections</a></div><div class="ttdeci">bool tripleIntersections</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00041">readInput.cpp:41</a></div></div>
<div class="ttc" id="vector_functions_8h_html_abb1d4beb5939c7a5ddd4978c15fab7bb"><div class="ttname"><a href="vector_functions_8h.html#abb1d4beb5939c7a5ddd4978c15fab7bb">dotProduct</a></div><div class="ttdeci">T dotProduct(const T *A, const T *B)</div><div class="ttdef"><b>Definition:</b> <a href="vector_functions_8h_source.html#l00058">vectorFunctions.h:58</a></div></div>
<div class="ttc" id="struct_int_points_html"><div class="ttname"><a href="struct_int_points.html">IntPoints</a></div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00132">structures.h:132</a></div></div>
<div class="ttc" id="struct_int_points_html_a327ea7de5bfa98095a81d4c5709b5859"><div class="ttname"><a href="struct_int_points.html#a327ea7de5bfa98095a81d4c5709b5859">IntPoints::x1</a></div><div class="ttdeci">double x1</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00142">structures.h:142</a></div></div>
<div class="ttc" id="output_8cpp_html_a8aa48d2a57afeb6e59069ac0a8a5f9cc"><div class="ttname"><a href="output_8cpp.html#a8aa48d2a57afeb6e59069ac0a8a5f9cc">writeRejectsPerAttempt</a></div><div class="ttdeci">void writeRejectsPerAttempt(Stats &amp;pstats, std::string &amp;output)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l01147">output.cpp:1147</a></div></div>
<div class="ttc" id="output_8cpp_html_a19e92a0053347549c3bcd6c2cfb196f7"><div class="ttname"><a href="output_8cpp.html#a19e92a0053347549c3bcd6c2cfb196f7">makeDIR</a></div><div class="ttdeci">void makeDIR(const char *dir)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00991">output.cpp:991</a></div></div>
<div class="ttc" id="input_8h_html_aa98b605ce677adf12fe97d6fa9076b1c"><div class="ttname"><a href="input_8h.html#aa98b605ce677adf12fe97d6fa9076b1c">visualizationMode</a></div><div class="ttdeci">bool visualizationMode</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00036">readInput.cpp:36</a></div></div>
<div class="ttc" id="struct_stats_html_a6d521913f1a280406a6536cb632c4356"><div class="ttname"><a href="struct_stats.html#a6d521913f1a280406a6536cb632c4356">Stats::tripleNodeCount</a></div><div class="ttdeci">unsigned int tripleNodeCount</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00364">structures.h:364</a></div></div>
<div class="ttc" id="struct_point_html_a05ba3b1dfcb19430582ae953cbbfbded"><div class="ttname"><a href="struct_point.html#a05ba3b1dfcb19430582ae953cbbfbded">Point::z</a></div><div class="ttdeci">double z</div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00114">structures.h:114</a></div></div>
<div class="ttc" id="output_8cpp_html_a6923d93d3476402eb12320286998adb0"><div class="ttname"><a href="output_8cpp.html#a6923d93d3476402eb12320286998adb0">writeAllAcceptedRadii_OfFamily</a></div><div class="ttdeci">void writeAllAcceptedRadii_OfFamily(int familyNum, std::vector&lt; Poly &gt; &amp;acceptedPoly, std::string &amp;output)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00747">output.cpp:747</a></div></div>
<div class="ttc" id="output_8cpp_html_a77e468c6337aff7763211d1dd37230bf"><div class="ttname"><a href="output_8cpp.html#a77e468c6337aff7763211d1dd37230bf">writeTriplePts</a></div><div class="ttdeci">void writeTriplePts(std::vector&lt; Point &gt; &amp;triplePoints, std::vector&lt; unsigned int &gt; &amp;finalFractures, std::vector&lt; Poly &gt; &amp;acceptedPoly, std::vector&lt; IntPoints &gt; &amp;intPts, std::string &amp;output)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00797">output.cpp:797</a></div></div>
<div class="ttc" id="struct_stats_html"><div class="ttname"><a href="struct_stats.html">Stats</a></div><div class="ttdef"><b>Definition:</b> <a href="structures_8h_source.html#l00277">structures.h:277</a></div></div>
<div class="ttc" id="output_8cpp_html_a4ed77d5751dbcd90abcdaeccd521c6e8"><div class="ttname"><a href="output_8cpp.html#a4ed77d5751dbcd90abcdaeccd521c6e8">finishWritingIntFile</a></div><div class="ttdeci">void finishWritingIntFile(std::ostream &amp;fractIntFile, int fract1, int numPoints, int numIntersections, std::vector&lt; unsigned int &gt; &amp;intStart, std::vector&lt; unsigned int &gt; &amp;intersectingFractures)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00152">output.cpp:152</a></div></div>
<div class="ttc" id="output_8cpp_html_a3f79a93fe75b7edc3e91f27db1eecebc"><div class="ttname"><a href="output_8cpp.html#a3f79a93fe75b7edc3e91f27db1eecebc">writePolysInp_old</a></div><div class="ttdeci">void writePolysInp_old(std::vector&lt; unsigned int &gt; &amp;finalFractures, std::vector&lt; Poly &gt; &amp;acceptedPoly, std::string &amp;output)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00457">output.cpp:457</a></div></div>
<div class="ttc" id="input_8h_html_a5cd62663cb067d79183d8de4dd0224db"><div class="ttname"><a href="input_8h.html#a5cd62663cb067d79183d8de4dd0224db">domainSize</a></div><div class="ttdeci">double domainSize[3]</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00018">readInput.cpp:18</a></div></div>
<div class="ttc" id="output_8cpp_html_a96b4cdfdb19e66e4996481c31f0e2ed4"><div class="ttname"><a href="output_8cpp.html#a96b4cdfdb19e66e4996481c31f0e2ed4">writeShapeFams</a></div><div class="ttdeci">void writeShapeFams(std::vector&lt; Shape &gt; &amp;shapeFamilies, std::string &amp;output)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00882">output.cpp:882</a></div></div>
<div class="ttc" id="input_8h_html_a8ee9be1b5aa75abae556de3088cba6d9"><div class="ttname"><a href="input_8h.html#a8ee9be1b5aa75abae556de3088cba6d9">h</a></div><div class="ttdeci">double h</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00021">readInput.cpp:21</a></div></div>
<div class="ttc" id="vector_functions_8h_html_a94303b1c8dd36d71e57fd0e4d5d26ae3"><div class="ttname"><a href="vector_functions_8h.html#a94303b1c8dd36d71e57fd0e4d5d26ae3">crossProduct</a></div><div class="ttdeci">T * crossProduct(const T *v1, const T *v2)</div><div class="ttdef"><b>Definition:</b> <a href="vector_functions_8h_source.html#l00024">vectorFunctions.h:24</a></div></div>
<div class="ttc" id="output_8cpp_html_a57b8bb3d7eca7bea96500d210f45bee4"><div class="ttname"><a href="output_8cpp.html#a57b8bb3d7eca7bea96500d210f45bee4">writeRotationData</a></div><div class="ttdeci">void writeRotationData(std::vector&lt; Poly &gt; &amp;acceptedPoly, std::vector&lt; unsigned int &gt; &amp;finalFractures, std::vector&lt; Shape &gt; &amp;shapeFamilies, std::string output)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l01067">output.cpp:1067</a></div></div>
<div class="ttc" id="output_8cpp_html_a08e7277a09a396170a11d74b1dea4a8f"><div class="ttname"><a href="output_8cpp.html#a08e7277a09a396170a11d74b1dea4a8f">adjustIntFractIDs</a></div><div class="ttdeci">void adjustIntFractIDs(std::vector&lt; unsigned int &gt; &amp;finalFractures, std::vector&lt; Poly &gt; &amp;allPolys, std::vector&lt; IntPoints &gt; &amp;intPts)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00218">output.cpp:218</a></div></div>
<div class="ttc" id="output_8cpp_html_ac2cd20a288fc5b4e1d25bf9871f2cea4"><div class="ttname"><a href="output_8cpp.html#ac2cd20a288fc5b4e1d25bf9871f2cea4">writePoints</a></div><div class="ttdeci">void writePoints(std::ostream &amp;output, std::vector&lt; Point &gt; &amp;points, int start, unsigned int &amp;count)</div><div class="ttdef"><b>Definition:</b> <a href="output_8cpp_source.html#l00133">output.cpp:133</a></div></div>
<div class="ttc" id="input_8h_html_ad47617e2251da4eb87c56365e217c8e3"><div class="ttname"><a href="input_8h.html#ad47617e2251da4eb87c56365e217c8e3">stopCondition</a></div><div class="ttdeci">short stopCondition</div><div class="ttdef"><b>Definition:</b> <a href="read_input_8cpp_source.html#l00012">readInput.cpp:12</a></div></div>
<div class="ttc" id="generating_points_8cpp_html_a22991db6b15a6147e875c27a84402d4c"><div class="ttname"><a href="generating_points_8cpp.html#a22991db6b15a6147e875c27a84402d4c">discretizeLineOfIntersection</a></div><div class="ttdeci">std::vector&lt; Point &gt; discretizeLineOfIntersection(double *pt1, double *pt2, double dist)</div><div class="ttdef"><b>Definition:</b> <a href="generating_points_8cpp_source.html#l00018">generatingPoints.cpp:18</a></div></div>
<div class="ttc" id="read_input_functions_8cpp_html_a93d02ef3164ffc7b03270f3c0e1736aa"><div class="ttname"><a href="read_input_functions_8cpp.html#a93d02ef3164ffc7b03270f3c0e1736aa">checkIfOpen</a></div><div class="ttdeci">void checkIfOpen(std::ifstream &amp;stream, std::string fileName)</div><div class="ttdef"><b>Definition:</b> <a href="read_input_functions_8cpp_source.html#l00035">readInputFunctions.cpp:35</a></div></div>
<div class="ttc" id="read_input_functions_8h_html"><div class="ttname"><a href="read_input_functions_8h.html">readInputFunctions.h</a></div></div>
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