Christina Theodoris

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New activity in ctheodoris/Geneformer 2 days ago

Considerations on Gene symbol and Ensembl ID mapping

1

#576 opened 2 days ago by

lorenzocampini

New activity in ctheodoris/Geneformer 14 days ago

Ensembl gene ID version used in Geneformer (ENSG)

1

#575 opened 15 days ago by

jenny143

New activity in ctheodoris/Geneformer 17 days ago

use geneformer for mouse data

2

#574 opened 17 days ago by

jenny143

New activity in ctheodoris/Geneformer about 1 month ago

Clarification on label mapping for cardiomyopathy classifier (nf, dcm, hcm)

1

#571 opened about 1 month ago by

ro2h5

New activity in ctheodoris/Genecorpus-30M about 1 month ago

median computation

1

#26 opened 11 months ago by

shakeel604

New activity in ctheodoris/Geneformer about 1 month ago

problem with get_train_sampler()

1

#572 opened about 1 month ago by

scsrsao

problem when running gene_classification.ipynb

2

#573 opened about 1 month ago by

jenny143

updated a model about 1 month ago

ctheodoris/Geneformer

Fill-Mask • 0.3B • Updated Dec 9, 2025 • 1.33k • • 267

New activity in ctheodoris/Geneformer about 2 months ago

Genecorpus-95M availability

3

#526 opened 9 months ago by

ZhexuanLiu

Clarification on tuning "frozen layers" hyperparameter with RayTune

1

#570 opened about 2 months ago by

ro2h5

TypeError in classifier.py

1

#568 opened 2 months ago by

ro2h5

Fix TypeError in make_perturbation_batch_special

1

#567 opened 2 months ago by

so298

New activity in ctheodoris/Geneformer 2 months ago

Embedding bulk RNA-seq

1

#569 opened 2 months ago by

lorenzocampini

New activity in ctheodoris/Geneformer 3 months ago

Finetuning vs Pretraining Speed

2

#566 opened 3 months ago by

yqsu95

Bug in tokenizer.py: tokenize_loom

1

#565 opened 3 months ago by

yqsu95

Setting max_ncells=None in EmbExtractor causes TypeError

1

#564 opened 3 months ago by

ro2h5

New activity in ctheodoris/Geneformer 4 months ago

tokenizer zarr integration

1

#561 opened 5 months ago by

jo-mengr

Fine tuning questions

6

#462 opened about 1 year ago by

ZYSK-huggingface

Guidance on speeding up Geneformer ISP on CPU

1

#563 opened 4 months ago by

bogdantanasa

New activity in ctheodoris/Geneformer 5 months ago

Add fix for new datasets version to make_perturbation_batch_special

1

#562 opened 5 months ago by

tusharagashe