Upload TextClassificationPipeline
Browse files- config.json +811 -0
- model.safetensors +3 -0
- special_tokens_map.json +37 -0
- tokenizer_config.json +53 -0
- vocab.txt +33 -0
config.json
ADDED
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@@ -0,0 +1,811 @@
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| 1 |
+
{
|
| 2 |
+
"_name_or_path": "/groups/pupko/edodotan/PretrainAccelerator/validators/cell_location/models/results/facebook_esm2_t30_150M_UR50D_long/checkpoint-1200000/",
|
| 3 |
+
"architectures": [
|
| 4 |
+
"EsmForSequenceClassification"
|
| 5 |
+
],
|
| 6 |
+
"attention_probs_dropout_prob": 0.0,
|
| 7 |
+
"classifier_dropout": null,
|
| 8 |
+
"emb_layer_norm_before": false,
|
| 9 |
+
"esmfold_config": null,
|
| 10 |
+
"hidden_act": "gelu",
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| 11 |
+
"hidden_dropout_prob": 0.0,
|
| 12 |
+
"hidden_size": 640,
|
| 13 |
+
"id2label": {
|
| 14 |
+
"0": "a band",
|
| 15 |
+
"1": "acidocalcisome membrane",
|
| 16 |
+
"2": "acrosome",
|
| 17 |
+
"3": "acrosome inner membrane",
|
| 18 |
+
"4": "acrosome lumen",
|
| 19 |
+
"5": "acrosome membrane",
|
| 20 |
+
"6": "actin patch",
|
| 21 |
+
"7": "adherens junction",
|
| 22 |
+
"8": "aleurone grain",
|
| 23 |
+
"9": "aleurone grain membrane",
|
| 24 |
+
"10": "amyloplast",
|
| 25 |
+
"11": "amyloplast membrane",
|
| 26 |
+
"12": "anammoxosome",
|
| 27 |
+
"13": "apical cell membrane",
|
| 28 |
+
"14": "apicolateral cell membrane",
|
| 29 |
+
"15": "apicoplast",
|
| 30 |
+
"16": "apoplast",
|
| 31 |
+
"17": "archaeal flagellum",
|
| 32 |
+
"18": "ascus epiplasm",
|
| 33 |
+
"19": "attachment organelle",
|
| 34 |
+
"20": "attachment organelle membrane",
|
| 35 |
+
"21": "autolysosome membrane",
|
| 36 |
+
"22": "autophagosome",
|
| 37 |
+
"23": "autophagosome membrane",
|
| 38 |
+
"24": "axon",
|
| 39 |
+
"25": "bacterial flagellum",
|
| 40 |
+
"26": "bacterial flagellum basal body",
|
| 41 |
+
"27": "bacterial microcompartment",
|
| 42 |
+
"28": "basal cell membrane",
|
| 43 |
+
"29": "basement membrane",
|
| 44 |
+
"30": "basolateral cell membrane",
|
| 45 |
+
"31": "bud",
|
| 46 |
+
"32": "bud membrane",
|
| 47 |
+
"33": "bud neck",
|
| 48 |
+
"34": "bud tip",
|
| 49 |
+
"35": "cajal body",
|
| 50 |
+
"36": "calyx",
|
| 51 |
+
"37": "capsule",
|
| 52 |
+
"38": "carboxysome",
|
| 53 |
+
"39": "caveola",
|
| 54 |
+
"40": "cell cortex",
|
| 55 |
+
"41": "cell envelope",
|
| 56 |
+
"42": "cell inner membrane",
|
| 57 |
+
"43": "cell junction",
|
| 58 |
+
"44": "cell membrane",
|
| 59 |
+
"45": "cell outer membrane",
|
| 60 |
+
"46": "cell projection",
|
| 61 |
+
"47": "cell septum",
|
| 62 |
+
"48": "cell surface",
|
| 63 |
+
"49": "cell tip",
|
| 64 |
+
"50": "cellular chromatophore membrane",
|
| 65 |
+
"51": "cellular thylakoid lumen",
|
| 66 |
+
"52": "cellular thylakoid membrane",
|
| 67 |
+
"53": "cell wall",
|
| 68 |
+
"54": "centriolar satellite",
|
| 69 |
+
"55": "centriole",
|
| 70 |
+
"56": "centromere",
|
| 71 |
+
"57": "centrosome",
|
| 72 |
+
"58": "chloroplast",
|
| 73 |
+
"59": "chloroplast envelope",
|
| 74 |
+
"60": "chloroplast inner membrane",
|
| 75 |
+
"61": "chloroplast intermembrane space",
|
| 76 |
+
"62": "chloroplast membrane",
|
| 77 |
+
"63": "chloroplast nucleoid",
|
| 78 |
+
"64": "chloroplast outer membrane",
|
| 79 |
+
"65": "chloroplast stroma",
|
| 80 |
+
"66": "chloroplast thylakoid",
|
| 81 |
+
"67": "chloroplast thylakoid lumen",
|
| 82 |
+
"68": "chloroplast thylakoid membrane",
|
| 83 |
+
"69": "chlorosome",
|
| 84 |
+
"70": "chlorosome envelope",
|
| 85 |
+
"71": "chromaffin granule",
|
| 86 |
+
"72": "chromaffin granule lumen",
|
| 87 |
+
"73": "chromaffin granule membrane",
|
| 88 |
+
"74": "chromoplast",
|
| 89 |
+
"75": "chromoplast stroma",
|
| 90 |
+
"76": "chromosome",
|
| 91 |
+
"77": "cilium",
|
| 92 |
+
"78": "cilium axoneme",
|
| 93 |
+
"79": "cilium basal body",
|
| 94 |
+
"80": "cilium membrane",
|
| 95 |
+
"81": "cis-golgi network",
|
| 96 |
+
"82": "cis-golgi network membrane",
|
| 97 |
+
"83": "clathrin-coated pit",
|
| 98 |
+
"84": "clathrin-coated vesicle",
|
| 99 |
+
"85": "clathrin-coated vesicle membrane",
|
| 100 |
+
"86": "cleavage furrow",
|
| 101 |
+
"87": "coated pit",
|
| 102 |
+
"88": "contractile vacuole",
|
| 103 |
+
"89": "contractile vacuole membrane",
|
| 104 |
+
"90": "copi-coated vesicle",
|
| 105 |
+
"91": "copi-coated vesicle membrane",
|
| 106 |
+
"92": "copii-coated vesicle",
|
| 107 |
+
"93": "copii-coated vesicle membrane",
|
| 108 |
+
"94": "cortical granule",
|
| 109 |
+
"95": "cvt vesicle membrane",
|
| 110 |
+
"96": "cyanelle",
|
| 111 |
+
"97": "cyanelle stroma",
|
| 112 |
+
"98": "cyanelle thylakoid lumen",
|
| 113 |
+
"99": "cyanelle thylakoid membrane",
|
| 114 |
+
"100": "cytolytic granule",
|
| 115 |
+
"101": "cytoplasm",
|
| 116 |
+
"102": "cytoplasmic granule",
|
| 117 |
+
"103": "cytoplasmic granule lumen",
|
| 118 |
+
"104": "cytoplasmic granule membrane",
|
| 119 |
+
"105": "cytoplasmic ribonucleoprotein granule",
|
| 120 |
+
"106": "cytoplasmic vesicle",
|
| 121 |
+
"107": "cytoplasmic vesicle lumen",
|
| 122 |
+
"108": "cytoplasmic vesicle membrane",
|
| 123 |
+
"109": "cytoskeleton",
|
| 124 |
+
"110": "cytosol",
|
| 125 |
+
"111": "dendrite",
|
| 126 |
+
"112": "dendritic spine",
|
| 127 |
+
"113": "dendritic spine membrane",
|
| 128 |
+
"114": "desmosome",
|
| 129 |
+
"115": "dynein axonemal particle",
|
| 130 |
+
"116": "early endosome",
|
| 131 |
+
"117": "early endosome membrane",
|
| 132 |
+
"118": "encapsulin nanocompartment",
|
| 133 |
+
"119": "endomembrane system",
|
| 134 |
+
"120": "endoplasmic reticulum",
|
| 135 |
+
"121": "endoplasmic reticulum-golgi intermediate compartment",
|
| 136 |
+
"122": "endoplasmic reticulum-golgi intermediate compartment membrane",
|
| 137 |
+
"123": "endoplasmic reticulum lumen",
|
| 138 |
+
"124": "endoplasmic reticulum membrane",
|
| 139 |
+
"125": "endosome",
|
| 140 |
+
"126": "endosome membrane",
|
| 141 |
+
"127": "etioplast membrane",
|
| 142 |
+
"128": "extracellular exosome",
|
| 143 |
+
"129": "extracellular matrix",
|
| 144 |
+
"130": "extracellular space",
|
| 145 |
+
"131": "extracellular vesicle",
|
| 146 |
+
"132": "extracellular vesicle membrane",
|
| 147 |
+
"133": "filopodium",
|
| 148 |
+
"134": "filopodium membrane",
|
| 149 |
+
"135": "fimbrium",
|
| 150 |
+
"136": "flagellar pocket",
|
| 151 |
+
"137": "flagellum",
|
| 152 |
+
"138": "flagellum axoneme",
|
| 153 |
+
"139": "flagellum basal body",
|
| 154 |
+
"140": "flagellum membrane",
|
| 155 |
+
"141": "focal adhesion",
|
| 156 |
+
"142": "forespore",
|
| 157 |
+
"143": "forespore inner membrane",
|
| 158 |
+
"144": "forespore intermembrane space",
|
| 159 |
+
"145": "forespore membrane",
|
| 160 |
+
"146": "forespore outer membrane",
|
| 161 |
+
"147": "gap junction",
|
| 162 |
+
"148": "gas vesicle",
|
| 163 |
+
"149": "gas vesicle shell",
|
| 164 |
+
"150": "gem",
|
| 165 |
+
"151": "glycosome",
|
| 166 |
+
"152": "glyoxysome",
|
| 167 |
+
"153": "glyoxysome membrane",
|
| 168 |
+
"154": "golgi apparatus",
|
| 169 |
+
"155": "golgi apparatus lumen",
|
| 170 |
+
"156": "golgi apparatus membrane",
|
| 171 |
+
"157": "golgi outpost",
|
| 172 |
+
"158": "golgi stack",
|
| 173 |
+
"159": "golgi stack membrane",
|
| 174 |
+
"160": "growth cone",
|
| 175 |
+
"161": "hemidesmosome",
|
| 176 |
+
"162": "host cell inner membrane",
|
| 177 |
+
"163": "host cell junction",
|
| 178 |
+
"164": "host cell membrane",
|
| 179 |
+
"165": "host cell outer membrane",
|
| 180 |
+
"166": "host cell surface",
|
| 181 |
+
"167": "host cellular thylakoid membrane",
|
| 182 |
+
"168": "host cell wall",
|
| 183 |
+
"169": "host chloroplast envelope",
|
| 184 |
+
"170": "host cytoplasm",
|
| 185 |
+
"171": "host cytoplasmic vesicle",
|
| 186 |
+
"172": "host cytoplasmic vesicle membrane",
|
| 187 |
+
"173": "host cytoskeleton",
|
| 188 |
+
"174": "host cytosol",
|
| 189 |
+
"175": "host endoplasmic reticulum",
|
| 190 |
+
"176": "host endoplasmic reticulum-golgi intermediate compartment",
|
| 191 |
+
"177": "host endoplasmic reticulum lumen",
|
| 192 |
+
"178": "host endoplasmic reticulum membrane",
|
| 193 |
+
"179": "host endosome",
|
| 194 |
+
"180": "host golgi apparatus",
|
| 195 |
+
"181": "host golgi apparatus membrane",
|
| 196 |
+
"182": "host membrane",
|
| 197 |
+
"183": "host mitochondrion",
|
| 198 |
+
"184": "host mitochondrion inner membrane",
|
| 199 |
+
"185": "host mitochondrion membrane",
|
| 200 |
+
"186": "host mitochondrion outer membrane",
|
| 201 |
+
"187": "host multivesicular body",
|
| 202 |
+
"188": "host nucleolus",
|
| 203 |
+
"189": "host nucleoplasm",
|
| 204 |
+
"190": "host nucleus",
|
| 205 |
+
"191": "host nucleus envelope",
|
| 206 |
+
"192": "host nucleus inner membrane",
|
| 207 |
+
"193": "host nucleus matrix",
|
| 208 |
+
"194": "host nucleus membrane",
|
| 209 |
+
"195": "host perinuclear region",
|
| 210 |
+
"196": "host periplasm",
|
| 211 |
+
"197": "host plasmodesma",
|
| 212 |
+
"198": "host rough endoplasmic reticulum",
|
| 213 |
+
"199": "host rough endoplasmic reticulum membrane",
|
| 214 |
+
"200": "hydrogenosome",
|
| 215 |
+
"201": "hydrogenosome lumen",
|
| 216 |
+
"202": "i band",
|
| 217 |
+
"203": "inflammasome",
|
| 218 |
+
"204": "inner membrane complex",
|
| 219 |
+
"205": "interphotoreceptor matrix",
|
| 220 |
+
"206": "invadopodium membrane",
|
| 221 |
+
"207": "kinetochore",
|
| 222 |
+
"208": "kinetoplast",
|
| 223 |
+
"209": "lamellipodium",
|
| 224 |
+
"210": "lamellipodium membrane",
|
| 225 |
+
"211": "late endosome",
|
| 226 |
+
"212": "late endosome lumen",
|
| 227 |
+
"213": "late endosome membrane",
|
| 228 |
+
"214": "lateral cell membrane",
|
| 229 |
+
"215": "lipid droplet",
|
| 230 |
+
"216": "lysosome",
|
| 231 |
+
"217": "lysosome lumen",
|
| 232 |
+
"218": "lysosome membrane",
|
| 233 |
+
"219": "lytic vacuole",
|
| 234 |
+
"220": "magnetosome",
|
| 235 |
+
"221": "magnetosome membrane",
|
| 236 |
+
"222": "melanosome",
|
| 237 |
+
"223": "melanosome lumen",
|
| 238 |
+
"224": "melanosome membrane",
|
| 239 |
+
"225": "membrane",
|
| 240 |
+
"226": "membrane raft",
|
| 241 |
+
"227": "microneme",
|
| 242 |
+
"228": "microneme membrane",
|
| 243 |
+
"229": "microsome",
|
| 244 |
+
"230": "microsome membrane",
|
| 245 |
+
"231": "microtubule organizing center",
|
| 246 |
+
"232": "microvillus",
|
| 247 |
+
"233": "microvillus membrane",
|
| 248 |
+
"234": "midbody",
|
| 249 |
+
"235": "midbody ring",
|
| 250 |
+
"236": "mitochondrion",
|
| 251 |
+
"237": "mitochondrion envelope",
|
| 252 |
+
"238": "mitochondrion inner membrane",
|
| 253 |
+
"239": "mitochondrion intermembrane space",
|
| 254 |
+
"240": "mitochondrion matrix",
|
| 255 |
+
"241": "mitochondrion membrane",
|
| 256 |
+
"242": "mitochondrion nucleoid",
|
| 257 |
+
"243": "mitochondrion outer membrane",
|
| 258 |
+
"244": "mitosome",
|
| 259 |
+
"245": "mitosome matrix",
|
| 260 |
+
"246": "mitosome membrane",
|
| 261 |
+
"247": "m line",
|
| 262 |
+
"248": "multivesicular body",
|
| 263 |
+
"249": "multivesicular body membrane",
|
| 264 |
+
"250": "myelin membrane",
|
| 265 |
+
"251": "myofibril",
|
| 266 |
+
"252": "nematocyst",
|
| 267 |
+
"253": "neuronal dense core vesicle membrane",
|
| 268 |
+
"254": "neuron projection",
|
| 269 |
+
"255": "nuclear body",
|
| 270 |
+
"256": "nuclear pore complex",
|
| 271 |
+
"257": "nucleoid",
|
| 272 |
+
"258": "nucleolus",
|
| 273 |
+
"259": "nucleoplasm",
|
| 274 |
+
"260": "nucleus",
|
| 275 |
+
"261": "nucleus envelope",
|
| 276 |
+
"262": "nucleus inner membrane",
|
| 277 |
+
"263": "nucleus lamina",
|
| 278 |
+
"264": "nucleus matrix",
|
| 279 |
+
"265": "nucleus membrane",
|
| 280 |
+
"266": "nucleus outer membrane",
|
| 281 |
+
"267": "nucleus speckle",
|
| 282 |
+
"268": "organellar chromatophore",
|
| 283 |
+
"269": "organellar chromatophore thylakoid membrane",
|
| 284 |
+
"270": "parasitophorous vacuole",
|
| 285 |
+
"271": "parasitophorous vacuole lumen",
|
| 286 |
+
"272": "parasitophorous vacuole membrane",
|
| 287 |
+
"273": "p-body",
|
| 288 |
+
"274": "peribacteroid membrane",
|
| 289 |
+
"275": "peribacteroid space",
|
| 290 |
+
"276": "perikaryon",
|
| 291 |
+
"277": "perinuclear region",
|
| 292 |
+
"278": "perinuclear theca",
|
| 293 |
+
"279": "periplasm",
|
| 294 |
+
"280": "periplasmic flagellum",
|
| 295 |
+
"281": "perispore",
|
| 296 |
+
"282": "peroxisome",
|
| 297 |
+
"283": "peroxisome matrix",
|
| 298 |
+
"284": "peroxisome membrane",
|
| 299 |
+
"285": "phagocytic cup",
|
| 300 |
+
"286": "phagosome",
|
| 301 |
+
"287": "phagosome membrane",
|
| 302 |
+
"288": "photoreceptor inner segment",
|
| 303 |
+
"289": "photoreceptor inner segment membrane",
|
| 304 |
+
"290": "photoreceptor outer segment",
|
| 305 |
+
"291": "photoreceptor outer segment membrane",
|
| 306 |
+
"292": "phragmoplast",
|
| 307 |
+
"293": "plasmodesma",
|
| 308 |
+
"294": "plastid",
|
| 309 |
+
"295": "plastid inner membrane",
|
| 310 |
+
"296": "plastid membrane",
|
| 311 |
+
"297": "plastid outer membrane",
|
| 312 |
+
"298": "plastid stroma",
|
| 313 |
+
"299": "plastid thylakoid membrane",
|
| 314 |
+
"300": "plastoglobule",
|
| 315 |
+
"301": "pml body",
|
| 316 |
+
"302": "podosome",
|
| 317 |
+
"303": "pollen coat",
|
| 318 |
+
"304": "postsynapse",
|
| 319 |
+
"305": "postsynaptic cell membrane",
|
| 320 |
+
"306": "postsynaptic density",
|
| 321 |
+
"307": "postsynaptic density membrane",
|
| 322 |
+
"308": "postsynaptic recycling endosome membrane",
|
| 323 |
+
"309": "preautophagosomal structure",
|
| 324 |
+
"310": "preautophagosomal structure membrane",
|
| 325 |
+
"311": "presynapse",
|
| 326 |
+
"312": "presynaptic active zone",
|
| 327 |
+
"313": "presynaptic cell membrane",
|
| 328 |
+
"314": "prevacuolar compartment",
|
| 329 |
+
"315": "prevacuolar compartment membrane",
|
| 330 |
+
"316": "primary cell wall",
|
| 331 |
+
"317": "prospore",
|
| 332 |
+
"318": "prospore membrane",
|
| 333 |
+
"319": "protein storage vacuole",
|
| 334 |
+
"320": "protein storage vacuole lumen",
|
| 335 |
+
"321": "protein storage vacuole membrane",
|
| 336 |
+
"322": "pseudopodium",
|
| 337 |
+
"323": "recycling endosome",
|
| 338 |
+
"324": "recycling endosome membrane",
|
| 339 |
+
"325": "rhoptry membrane",
|
| 340 |
+
"326": "rough endoplasmic reticulum",
|
| 341 |
+
"327": "rough endoplasmic reticulum lumen",
|
| 342 |
+
"328": "rough endoplasmic reticulum membrane",
|
| 343 |
+
"329": "ruffle",
|
| 344 |
+
"330": "ruffle membrane",
|
| 345 |
+
"331": "sarcolemma",
|
| 346 |
+
"332": "sarcomere",
|
| 347 |
+
"333": "sarcoplasmic reticulum",
|
| 348 |
+
"334": "sarcoplasmic reticulum lumen",
|
| 349 |
+
"335": "sarcoplasmic reticulum membrane",
|
| 350 |
+
"336": "secreted",
|
| 351 |
+
"337": "secretory vesicle",
|
| 352 |
+
"338": "secretory vesicle lumen",
|
| 353 |
+
"339": "secretory vesicle membrane",
|
| 354 |
+
"340": "septate junction",
|
| 355 |
+
"341": "s-layer",
|
| 356 |
+
"342": "smooth endoplasmic reticulum membrane",
|
| 357 |
+
"343": "spindle",
|
| 358 |
+
"344": "spindle pole",
|
| 359 |
+
"345": "spindle pole body",
|
| 360 |
+
"346": "spore",
|
| 361 |
+
"347": "spore coat",
|
| 362 |
+
"348": "spore core",
|
| 363 |
+
"349": "spore cortex",
|
| 364 |
+
"350": "spore membrane",
|
| 365 |
+
"351": "spore outer membrane",
|
| 366 |
+
"352": "spore polar tube",
|
| 367 |
+
"353": "spore wall",
|
| 368 |
+
"354": "stereocilium",
|
| 369 |
+
"355": "stereocilium membrane",
|
| 370 |
+
"356": "stress fiber",
|
| 371 |
+
"357": "stress granule",
|
| 372 |
+
"358": "surface film",
|
| 373 |
+
"359": "symbiosome",
|
| 374 |
+
"360": "synapse",
|
| 375 |
+
"361": "synaptic cell membrane",
|
| 376 |
+
"362": "synaptic cleft",
|
| 377 |
+
"363": "synaptic vesicle",
|
| 378 |
+
"364": "synaptic vesicle membrane",
|
| 379 |
+
"365": "synaptosome",
|
| 380 |
+
"366": "target cell",
|
| 381 |
+
"367": "target cell cytoplasm",
|
| 382 |
+
"368": "target cell membrane",
|
| 383 |
+
"369": "tegument membrane",
|
| 384 |
+
"370": "telomere",
|
| 385 |
+
"371": "thylakoid",
|
| 386 |
+
"372": "tight junction",
|
| 387 |
+
"373": "trans-golgi network",
|
| 388 |
+
"374": "trans-golgi network membrane",
|
| 389 |
+
"375": "trichocyst",
|
| 390 |
+
"376": "t-tubule",
|
| 391 |
+
"377": "vacuole",
|
| 392 |
+
"378": "vacuole lumen",
|
| 393 |
+
"379": "vacuole membrane",
|
| 394 |
+
"380": "vesicle",
|
| 395 |
+
"381": "virion",
|
| 396 |
+
"382": "virion membrane",
|
| 397 |
+
"383": "virion tegument",
|
| 398 |
+
"384": "z line",
|
| 399 |
+
"385": "zona pellucida",
|
| 400 |
+
"386": "zymogen granule",
|
| 401 |
+
"387": "zymogen granule membrane"
|
| 402 |
+
},
|
| 403 |
+
"initializer_range": 0.02,
|
| 404 |
+
"intermediate_size": 2560,
|
| 405 |
+
"is_folding_model": false,
|
| 406 |
+
"label2id": {
|
| 407 |
+
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| 411 |
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| 412 |
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| 413 |
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| 414 |
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| 415 |
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| 416 |
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| 417 |
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| 418 |
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| 419 |
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| 420 |
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| 421 |
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| 422 |
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| 423 |
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| 424 |
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| 425 |
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| 426 |
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| 428 |
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| 429 |
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| 430 |
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| 431 |
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| 432 |
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| 433 |
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| 434 |
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| 435 |
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| 436 |
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| 437 |
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| 438 |
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| 439 |
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| 440 |
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| 441 |
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| 442 |
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| 443 |
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| 444 |
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| 445 |
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| 446 |
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| 447 |
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| 450 |
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| 454 |
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| 456 |
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| 457 |
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| 460 |
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| 462 |
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| 463 |
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| 465 |
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| 466 |
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| 470 |
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| 471 |
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| 473 |
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| 474 |
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| 482 |
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| 503 |
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| 505 |
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| 525 |
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| 545 |
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| 550 |
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| 551 |
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| 553 |
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| 661 |
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| 663 |
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| 665 |
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| 666 |
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| 667 |
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| 668 |
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| 675 |
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| 684 |
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| 687 |
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| 690 |
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| 694 |
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| 695 |
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| 700 |
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| 701 |
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| 702 |
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| 703 |
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| 704 |
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| 705 |
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| 706 |
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| 707 |
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| 708 |
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| 709 |
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| 710 |
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| 711 |
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| 712 |
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| 713 |
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| 715 |
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| 716 |
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| 717 |
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| 718 |
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| 719 |
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| 720 |
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| 721 |
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| 722 |
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| 723 |
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| 724 |
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| 725 |
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| 726 |
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| 727 |
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| 728 |
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| 730 |
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| 731 |
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| 732 |
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| 733 |
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| 734 |
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| 736 |
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| 737 |
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| 738 |
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| 739 |
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| 740 |
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| 741 |
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| 742 |
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| 743 |
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| 744 |
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| 745 |
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| 746 |
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| 747 |
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| 748 |
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| 749 |
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| 750 |
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| 751 |
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| 752 |
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| 753 |
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|
| 754 |
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| 755 |
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|
| 756 |
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| 757 |
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|
| 758 |
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|
| 759 |
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| 760 |
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| 761 |
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| 762 |
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| 763 |
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| 764 |
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| 765 |
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| 766 |
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| 767 |
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| 768 |
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| 769 |
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| 770 |
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| 771 |
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| 772 |
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| 773 |
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| 774 |
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|
| 775 |
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|
| 776 |
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|
| 777 |
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|
| 778 |
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| 779 |
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|
| 780 |
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| 781 |
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|
| 782 |
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|
| 783 |
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|
| 784 |
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|
| 785 |
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|
| 786 |
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|
| 787 |
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|
| 788 |
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| 789 |
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"virion membrane": 382,
|
| 790 |
+
"virion tegument": 383,
|
| 791 |
+
"z line": 384,
|
| 792 |
+
"zona pellucida": 385,
|
| 793 |
+
"zymogen granule": 386,
|
| 794 |
+
"zymogen granule membrane": 387
|
| 795 |
+
},
|
| 796 |
+
"layer_norm_eps": 1e-05,
|
| 797 |
+
"mask_token_id": 32,
|
| 798 |
+
"max_position_embeddings": 1026,
|
| 799 |
+
"model_type": "esm",
|
| 800 |
+
"num_attention_heads": 20,
|
| 801 |
+
"num_hidden_layers": 30,
|
| 802 |
+
"pad_token_id": 1,
|
| 803 |
+
"position_embedding_type": "rotary",
|
| 804 |
+
"problem_type": "multi_label_classification",
|
| 805 |
+
"token_dropout": true,
|
| 806 |
+
"torch_dtype": "float32",
|
| 807 |
+
"transformers_version": "4.43.3",
|
| 808 |
+
"use_cache": true,
|
| 809 |
+
"vocab_list": null,
|
| 810 |
+
"vocab_size": 33
|
| 811 |
+
}
|
model.safetensors
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:8bd2710b9aad03a31df8f552cdaaf2cd3112bd51fc3a6f17be8464b1f843aaf0
|
| 3 |
+
size 596238916
|
special_tokens_map.json
ADDED
|
@@ -0,0 +1,37 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"cls_token": {
|
| 3 |
+
"content": "<cls>",
|
| 4 |
+
"lstrip": false,
|
| 5 |
+
"normalized": false,
|
| 6 |
+
"rstrip": false,
|
| 7 |
+
"single_word": false
|
| 8 |
+
},
|
| 9 |
+
"eos_token": {
|
| 10 |
+
"content": "<eos>",
|
| 11 |
+
"lstrip": false,
|
| 12 |
+
"normalized": false,
|
| 13 |
+
"rstrip": false,
|
| 14 |
+
"single_word": false
|
| 15 |
+
},
|
| 16 |
+
"mask_token": {
|
| 17 |
+
"content": "<mask>",
|
| 18 |
+
"lstrip": false,
|
| 19 |
+
"normalized": false,
|
| 20 |
+
"rstrip": false,
|
| 21 |
+
"single_word": false
|
| 22 |
+
},
|
| 23 |
+
"pad_token": {
|
| 24 |
+
"content": "<pad>",
|
| 25 |
+
"lstrip": false,
|
| 26 |
+
"normalized": false,
|
| 27 |
+
"rstrip": false,
|
| 28 |
+
"single_word": false
|
| 29 |
+
},
|
| 30 |
+
"unk_token": {
|
| 31 |
+
"content": "<unk>",
|
| 32 |
+
"lstrip": false,
|
| 33 |
+
"normalized": false,
|
| 34 |
+
"rstrip": false,
|
| 35 |
+
"single_word": false
|
| 36 |
+
}
|
| 37 |
+
}
|
tokenizer_config.json
ADDED
|
@@ -0,0 +1,53 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
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|
|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"added_tokens_decoder": {
|
| 3 |
+
"0": {
|
| 4 |
+
"content": "<cls>",
|
| 5 |
+
"lstrip": false,
|
| 6 |
+
"normalized": false,
|
| 7 |
+
"rstrip": false,
|
| 8 |
+
"single_word": false,
|
| 9 |
+
"special": true
|
| 10 |
+
},
|
| 11 |
+
"1": {
|
| 12 |
+
"content": "<pad>",
|
| 13 |
+
"lstrip": false,
|
| 14 |
+
"normalized": false,
|
| 15 |
+
"rstrip": false,
|
| 16 |
+
"single_word": false,
|
| 17 |
+
"special": true
|
| 18 |
+
},
|
| 19 |
+
"2": {
|
| 20 |
+
"content": "<eos>",
|
| 21 |
+
"lstrip": false,
|
| 22 |
+
"normalized": false,
|
| 23 |
+
"rstrip": false,
|
| 24 |
+
"single_word": false,
|
| 25 |
+
"special": true
|
| 26 |
+
},
|
| 27 |
+
"3": {
|
| 28 |
+
"content": "<unk>",
|
| 29 |
+
"lstrip": false,
|
| 30 |
+
"normalized": false,
|
| 31 |
+
"rstrip": false,
|
| 32 |
+
"single_word": false,
|
| 33 |
+
"special": true
|
| 34 |
+
},
|
| 35 |
+
"32": {
|
| 36 |
+
"content": "<mask>",
|
| 37 |
+
"lstrip": false,
|
| 38 |
+
"normalized": false,
|
| 39 |
+
"rstrip": false,
|
| 40 |
+
"single_word": false,
|
| 41 |
+
"special": true
|
| 42 |
+
}
|
| 43 |
+
},
|
| 44 |
+
"additional_special_tokens": [],
|
| 45 |
+
"clean_up_tokenization_spaces": true,
|
| 46 |
+
"cls_token": "<cls>",
|
| 47 |
+
"eos_token": "<eos>",
|
| 48 |
+
"mask_token": "<mask>",
|
| 49 |
+
"model_max_length": 1000000000000000019884624838656,
|
| 50 |
+
"pad_token": "<pad>",
|
| 51 |
+
"tokenizer_class": "EsmTokenizer",
|
| 52 |
+
"unk_token": "<unk>"
|
| 53 |
+
}
|
vocab.txt
ADDED
|
@@ -0,0 +1,33 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
<cls>
|
| 2 |
+
<pad>
|
| 3 |
+
<eos>
|
| 4 |
+
<unk>
|
| 5 |
+
L
|
| 6 |
+
A
|
| 7 |
+
G
|
| 8 |
+
V
|
| 9 |
+
S
|
| 10 |
+
E
|
| 11 |
+
R
|
| 12 |
+
T
|
| 13 |
+
I
|
| 14 |
+
D
|
| 15 |
+
P
|
| 16 |
+
K
|
| 17 |
+
Q
|
| 18 |
+
N
|
| 19 |
+
F
|
| 20 |
+
Y
|
| 21 |
+
M
|
| 22 |
+
H
|
| 23 |
+
W
|
| 24 |
+
C
|
| 25 |
+
X
|
| 26 |
+
B
|
| 27 |
+
U
|
| 28 |
+
Z
|
| 29 |
+
O
|
| 30 |
+
.
|
| 31 |
+
-
|
| 32 |
+
<null_1>
|
| 33 |
+
<mask>
|