Trained classifier model on MIMIC-IV
Browse files
classification_log_2025-06-05_15-02-25.log
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| 1 |
+
2025-06-05 15:02:25,280 - INFO - ================================================================================ - [multilabel_classify.py:100:log_section]
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| 2 |
+
2025-06-05 15:02:25,281 - INFO - = 📌 INITIALIZING TRAINING ENVIRONMENT = - [multilabel_classify.py:101:log_section]
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| 3 |
+
2025-06-05 15:02:25,281 - INFO - ================================================================================ - [multilabel_classify.py:104:log_section]
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| 4 |
+
2025-06-05 15:02:25,281 - INFO - 🚀 Setting up data paths and environment variables... - [multilabel_classify.py:3560:main]
|
| 5 |
+
2025-06-05 15:02:25,281 - INFO - 📂 Using output directory: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b - [multilabel_classify.py:3566:main]
|
| 6 |
+
2025-06-05 15:02:25,281 - INFO - 🛠️ Command-line Arguments: - [multilabel_classify.py:368:print_args]
|
| 7 |
+
2025-06-05 15:02:25,281 - INFO -
|
| 8 |
+
🔹 output_dir: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b
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| 9 |
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🔹 source_url: XURLs.MIMIC4_DEMO
|
| 10 |
+
🔹 data: mimic4_icd10_full
|
| 11 |
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🔹 logfile: classification_log
|
| 12 |
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🔹 base_dir: ../tmp/MIMIC4_DEMO
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| 13 |
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🔹 hub_model_id: deb101/mistral-7b-instruct-v0.3-mimic4-adapt
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| 14 |
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🔹 model_name: mistralai/Mistral-7B-Instruct-v0.3
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| 15 |
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🔹 max_length: 512
|
| 16 |
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🔹 do_fresh_training: True
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| 17 |
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🔹 load_from_checkpoint: False
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| 18 |
+
🔹 task: multilabel-classify
|
| 19 |
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🔹 num_train_epochs: 4
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| 20 |
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🔹 per_device_train_batch_size: 8
|
| 21 |
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🔹 per_device_eval_batch_size: 8
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| 22 |
+
🔹 metric_for_best_model: precision_at_15
|
| 23 |
+
🔹 learning_rate: 0.0001
|
| 24 |
+
🔹 final_lr_scheduling: 1e-06
|
| 25 |
+
🔹 warmup_steps: 500
|
| 26 |
+
🔹 logfile_path: ../tmp/logs/classification_log_2025-06-05_15-02-25.log
|
| 27 |
+
🔹 source: /home/ubuntu/.xcube/data/mimic4_demo - [multilabel_classify.py:369:print_args]
|
| 28 |
+
2025-06-05 15:02:25,281 - INFO - ➖➖➖➖➖➖➖➖➖➖➖➖➖➖➖➖➖➖➖➖➖➖➖➖➖➖➖➖➖➖ - [multilabel_classify.py:370:print_args]
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| 29 |
+
2025-06-05 15:02:25,281 - INFO - ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - [multilabel_classify.py:100:log_section]
|
| 30 |
+
2025-06-05 15:02:25,281 - INFO - + ✨ LOADING DATASETS + - [multilabel_classify.py:101:log_section]
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| 31 |
+
2025-06-05 15:02:25,281 - INFO - ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - [multilabel_classify.py:104:log_section]
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| 32 |
+
2025-06-05 15:02:25,282 - INFO - 📊 Loading main datasets.... - [multilabel_classify.py:3572:main]
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| 33 |
+
2025-06-05 15:02:33,869 - INFO - 🔍 Total unique labels in dataset: 7942 - [multilabel_classify.py:3353:sample_df_with_full_label_coverage]
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| 34 |
+
2025-06-05 15:02:33,882 - INFO - 🧪 Attempt 1: Sampled 122 rows covering 863 labels. - [multilabel_classify.py:3367:sample_df_with_full_label_coverage]
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| 35 |
+
2025-06-05 15:02:33,892 - INFO - 🧪 Attempt 2: Sampled 122 rows covering 816 labels. - [multilabel_classify.py:3367:sample_df_with_full_label_coverage]
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| 36 |
+
2025-06-05 15:02:33,901 - INFO - 🧪 Attempt 3: Sampled 122 rows covering 885 labels. - [multilabel_classify.py:3367:sample_df_with_full_label_coverage]
|
| 37 |
+
2025-06-05 15:02:33,910 - INFO - 🧪 Attempt 4: Sampled 122 rows covering 828 labels. - [multilabel_classify.py:3367:sample_df_with_full_label_coverage]
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| 38 |
+
2025-06-05 15:02:33,920 - INFO - 🧪 Attempt 5: Sampled 122 rows covering 879 labels. - [multilabel_classify.py:3367:sample_df_with_full_label_coverage]
|
| 39 |
+
2025-06-05 15:02:33,928 - INFO - 🧪 Attempt 6: Sampled 122 rows covering 852 labels. - [multilabel_classify.py:3367:sample_df_with_full_label_coverage]
|
| 40 |
+
2025-06-05 15:02:33,937 - INFO - 🧪 Attempt 7: Sampled 122 rows covering 838 labels. - [multilabel_classify.py:3367:sample_df_with_full_label_coverage]
|
| 41 |
+
2025-06-05 15:02:33,946 - INFO - 🧪 Attempt 8: Sampled 122 rows covering 851 labels. - [multilabel_classify.py:3367:sample_df_with_full_label_coverage]
|
| 42 |
+
2025-06-05 15:02:33,955 - INFO - 🧪 Attempt 9: Sampled 122 rows covering 825 labels. - [multilabel_classify.py:3367:sample_df_with_full_label_coverage]
|
| 43 |
+
2025-06-05 15:02:33,964 - INFO - 🧪 Attempt 10: Sampled 122 rows covering 833 labels. - [multilabel_classify.py:3367:sample_df_with_full_label_coverage]
|
| 44 |
+
2025-06-05 15:02:33,964 - INFO - ⚠️ Skipping label coverage fix. 7109 labels are missing. - [multilabel_classify.py:3385:sample_df_with_full_label_coverage]
|
| 45 |
+
2025-06-05 15:02:33,964 - INFO - ✅ Final row count: 122 (Valid: 20, Not-valid: 102) - [multilabel_classify.py:3390:sample_df_with_full_label_coverage]
|
| 46 |
+
2025-06-05 15:02:33,983 - INFO - ******************************************************************************** - [multilabel_classify.py:100:log_section]
|
| 47 |
+
2025-06-05 15:02:33,983 - INFO - * 🌟 STARTING MULTI_LABEL CLASSIFICATION MODEL TRAINING * - [multilabel_classify.py:101:log_section]
|
| 48 |
+
2025-06-05 15:02:33,983 - INFO - ******************************************************************************** - [multilabel_classify.py:104:log_section]
|
| 49 |
+
2025-06-05 15:02:33,983 - INFO - 🔐 Loaded authentication token from environment - [multilabel_classify.py:3599:main]
|
| 50 |
+
2025-06-05 15:02:33,983 - INFO - 🏷️ Hub Model ID for this Classification task: deb101/mistral-7b-instruct-v0.3-mimic4-adapt-multilabel-classify - [multilabel_classify.py:3603:main]
|
| 51 |
+
2025-06-05 15:02:33,984 - INFO - -------------------------------------------------------------------------------- - [multilabel_classify.py:100:log_section]
|
| 52 |
+
2025-06-05 15:02:33,984 - INFO - - 📋 MODEL EXISTENCE CHECK - - [multilabel_classify.py:101:log_section]
|
| 53 |
+
2025-06-05 15:02:33,984 - INFO - -------------------------------------------------------------------------------- - [multilabel_classify.py:104:log_section]
|
| 54 |
+
2025-06-05 15:02:33,984 - INFO - 🔍 Checking model existence locally and on Hugging Face Hub... - [multilabel_classify.py:3468:check_model_existence]
|
| 55 |
+
2025-06-05 15:02:33,984 - INFO - ✅ Model exists locally at: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b - [multilabel_classify.py:3473:check_model_existence]
|
| 56 |
+
2025-06-05 15:02:34,066 - INFO - ✅ Model exists on Hugging Face Hub with ID: deb101/mistral-7b-instruct-v0.3-mimic4-adapt-multilabel-classify - [multilabel_classify.py:3487:check_model_existence]
|
| 57 |
+
2025-06-05 15:02:34,066 - INFO - 📁 Model exists either locally or on Hub - [multilabel_classify.py:3513:check_model_existence]
|
| 58 |
+
2025-06-05 15:02:34,067 - INFO - ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - [multilabel_classify.py:100:log_section]
|
| 59 |
+
2025-06-05 15:02:34,067 - INFO - + ✨ STARTING FRESH TRAINING + - [multilabel_classify.py:101:log_section]
|
| 60 |
+
2025-06-05 15:02:34,067 - INFO - ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - [multilabel_classify.py:104:log_section]
|
| 61 |
+
2025-06-05 15:02:34,067 - INFO - 🔄 Starting fresh training (either forced or model not found)... - [multilabel_classify.py:3616:main]
|
| 62 |
+
2025-06-05 15:02:34,081 - WARNING - Note: Environment variable`HF_TOKEN` is set and is the current active token independently from the token you've just configured. - [_login.py:415:_login]
|
| 63 |
+
2025-06-05 15:02:34,081 - INFO - ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - [multilabel_classify.py:100:log_section]
|
| 64 |
+
2025-06-05 15:02:34,081 - INFO - + ✨ LOADING BASE MODEL + - [multilabel_classify.py:101:log_section]
|
| 65 |
+
2025-06-05 15:02:34,081 - INFO - ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - [multilabel_classify.py:104:log_section]
|
| 66 |
+
2025-06-05 15:02:34,081 - INFO - 📥 Loading pretrained model and tokenizer... - [multilabel_classify.py:3646:main]
|
| 67 |
+
2025-06-05 15:02:34,081 - INFO - 🚀 Starting model and tokenizer loading process... - [multilabel_classify.py:1243:load_base_model_and_tokenizer]
|
| 68 |
+
2025-06-05 15:02:34,082 - INFO - 📊 Quantization config: BitsAndBytesConfig {
|
| 69 |
+
"_load_in_4bit": true,
|
| 70 |
+
"_load_in_8bit": false,
|
| 71 |
+
"bnb_4bit_compute_dtype": "bfloat16",
|
| 72 |
+
"bnb_4bit_quant_storage": "uint8",
|
| 73 |
+
"bnb_4bit_quant_type": "nf4",
|
| 74 |
+
"bnb_4bit_use_double_quant": true,
|
| 75 |
+
"llm_int8_enable_fp32_cpu_offload": false,
|
| 76 |
+
"llm_int8_has_fp16_weight": false,
|
| 77 |
+
"llm_int8_skip_modules": null,
|
| 78 |
+
"llm_int8_threshold": 6.0,
|
| 79 |
+
"load_in_4bit": true,
|
| 80 |
+
"load_in_8bit": false,
|
| 81 |
+
"quant_method": "bitsandbytes"
|
| 82 |
+
}
|
| 83 |
+
- [multilabel_classify.py:1252:load_base_model_and_tokenizer]
|
| 84 |
+
2025-06-05 15:02:34,082 - INFO - 🔤 Loading tokenizer for model: deb101/mistral-7b-instruct-v0.3-mimic4-adapt... - [multilabel_classify.py:1256:load_base_model_and_tokenizer]
|
| 85 |
+
2025-06-05 15:02:34,439 - INFO - 🔍 Checking if deb101/mistral-7b-instruct-v0.3-mimic4-adapt is a PEFT model... - [multilabel_classify.py:1268:load_base_model_and_tokenizer]
|
| 86 |
+
2025-06-05 15:02:34,464 - INFO - ✅ Detected PEFT model. Base model: mistralai/Mistral-7B-Instruct-v0.3 - [multilabel_classify.py:1272:load_base_model_and_tokenizer]
|
| 87 |
+
2025-06-05 15:02:34,464 - INFO - 🔍 Loading model configuration for mistralai/Mistral-7B-Instruct-v0.3... - [multilabel_classify.py:1282:load_base_model_and_tokenizer]
|
| 88 |
+
2025-06-05 15:02:34,496 - INFO - Model type: mistral, Architectures: ['MistralForCausalLM'] - [multilabel_classify.py:1288:load_base_model_and_tokenizer]
|
| 89 |
+
2025-06-05 15:02:34,496 - INFO - 🧠 Loading base model: mistralai/Mistral-7B-Instruct-v0.3... - [multilabel_classify.py:1351:load_base_model_and_tokenizer]
|
| 90 |
+
2025-06-05 15:02:35,026 - INFO - We will use 90% of the memory on device 0 for storing the model, and 10% for the buffer to avoid OOM. You can set `max_memory` in to a higher value to use more memory (at your own risk). - [modeling.py:991:get_balanced_memory]
|
| 91 |
+
2025-06-05 15:02:40,290 - INFO - 🧩 Loading PEFT adapters for deb101/mistral-7b-instruct-v0.3-mimic4-adapt... - [multilabel_classify.py:1366:load_base_model_and_tokenizer]
|
| 92 |
+
2025-06-05 15:02:40,733 - INFO - 🔧 Before enabling PEFT adapters for training - [multilabel_classify.py:1368:load_base_model_and_tokenizer]
|
| 93 |
+
2025-06-05 15:02:40,735 - INFO - 📊 trainable params: 0 || all params: 7,254,839,296 || trainable%: 0.0000 - [multilabel_classify.py:159:log_print_output]
|
| 94 |
+
2025-06-05 15:02:40,738 - INFO - 🔧 After Enabling PEFT adapters for training - [multilabel_classify.py:1375:load_base_model_and_tokenizer]
|
| 95 |
+
2025-06-05 15:02:40,740 - INFO - 📊 trainable params: 6,815,744 || all params: 7,254,839,296 || trainable%: 0.0939 - [multilabel_classify.py:159:log_print_output]
|
| 96 |
+
2025-06-05 15:02:40,741 - INFO - ✅ Model and tokenizer successfully loaded! - [multilabel_classify.py:1416:load_base_model_and_tokenizer]
|
| 97 |
+
2025-06-05 15:02:40,741 - INFO - ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - [multilabel_classify.py:100:log_section]
|
| 98 |
+
2025-06-05 15:02:40,741 - INFO - + ✨ DATA PREPROCESSING + - [multilabel_classify.py:101:log_section]
|
| 99 |
+
2025-06-05 15:02:40,741 - INFO - ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - [multilabel_classify.py:104:log_section]
|
| 100 |
+
2025-06-05 15:02:40,742 - INFO - 🔄 Loading and preprocessing training data... - [multilabel_classify.py:3654:main]
|
| 101 |
+
2025-06-05 15:02:40,746 - INFO - Total number of labels: 833 - [multilabel_classify.py:1044:preprocess_data]
|
| 102 |
+
2025-06-05 15:02:40,746 - INFO - Rare labels (freq < 50): 832 - [multilabel_classify.py:1045:preprocess_data]
|
| 103 |
+
2025-06-05 15:02:40,746 - INFO - Not rare labels (freq >= 50): 1 - [multilabel_classify.py:1046:preprocess_data]
|
| 104 |
+
2025-06-05 15:02:40,746 - INFO - Label partitions and classes saved to ../tmp/MIMIC4_DEMO/labels_partition.json - [multilabel_classify.py:1047:preprocess_data]
|
| 105 |
+
2025-06-05 15:02:42,069 - INFO - The size of training set: 567 - [multilabel_classify.py:1143:preprocess_data]
|
| 106 |
+
2025-06-05 15:02:42,069 - INFO - The size of Evaluation set: 136 - [multilabel_classify.py:1144:preprocess_data]
|
| 107 |
+
2025-06-05 15:02:42,074 - INFO - Number of unique ICD-10 codes: 833 - [multilabel_classify.py:3660:main]
|
| 108 |
+
2025-06-05 15:02:42,074 - INFO - ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - [multilabel_classify.py:100:log_section]
|
| 109 |
+
2025-06-05 15:02:42,074 - INFO - + ✨ MODEL INITIALIZATION + - [multilabel_classify.py:101:log_section]
|
| 110 |
+
2025-06-05 15:02:42,074 - INFO - ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - [multilabel_classify.py:104:log_section]
|
| 111 |
+
2025-06-05 15:02:42,075 - INFO - 🧠 Initializing custom L2R model for outputting per-token relevance scores per ICD-10 codes. - [multilabel_classify.py:3663:main]
|
| 112 |
+
2025-06-05 15:02:42,075 - INFO - Will now start to create Multilabel-Classification Model from the base model - [multilabel_classify.py:560:__init__]
|
| 113 |
+
2025-06-05 15:02:42,078 - INFO - 📊 trainable params: 6,815,744 || all params: 3,765,178,368 || trainable%: 0.1810 - [multilabel_classify.py:614:compute_trainable_params]
|
| 114 |
+
2025-06-05 15:02:42,416 - INFO - Creating the Multi-Label Classification Model from base model mistralai/Mistral-7B-Instruct-v0.3 completed!!! - [multilabel_classify.py:602:__init__]
|
| 115 |
+
2025-06-05 15:02:42,419 - INFO - 📊 trainable params: 84,177,025 || all params: 3,842,539,649 || trainable%: 2.1907 - [multilabel_classify.py:614:compute_trainable_params]
|
| 116 |
+
2025-06-05 15:02:42,419 - INFO - ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - [multilabel_classify.py:100:log_section]
|
| 117 |
+
2025-06-05 15:02:42,419 - INFO - + ✨ TRAINING PREPARATION + - [multilabel_classify.py:101:log_section]
|
| 118 |
+
2025-06-05 15:02:42,419 - INFO - ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - [multilabel_classify.py:104:log_section]
|
| 119 |
+
2025-06-05 15:02:42,419 - INFO - ⚙️ Preparing training components and optimizers... - [multilabel_classify.py:3670:main]
|
| 120 |
+
2025-06-05 15:02:42,476 - INFO - 🖥️ Device: NVIDIA GH200 480GB - [multilabel_classify.py:891:log_training_configuration]
|
| 121 |
+
2025-06-05 15:02:42,476 - INFO - 🔋 CUDA Available: True - [multilabel_classify.py:894:log_training_configuration]
|
| 122 |
+
2025-06-05 15:02:42,476 - INFO - 💾 CUDA Device Count: 1 - [multilabel_classify.py:895:log_training_configuration]
|
| 123 |
+
2025-06-05 15:02:42,478 - INFO -
|
| 124 |
+
📋 Training Configuration 📋
|
| 125 |
+
+----------+-----------------------------+------------------------------------------------------------------+
|
| 126 |
+
| 🌟 Emoji | 🏷️ Parameter | 📊 Value |
|
| 127 |
+
+----------+-----------------------------+------------------------------------------------------------------+
|
| 128 |
+
| 📁 | Output Directory | ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b |
|
| 129 |
+
| 🔁 | Training Epochs | 4 |
|
| 130 |
+
| 🏋️ | Train Batch Size | 8 |
|
| 131 |
+
| 🔍 | Eval Batch Size | 8 |
|
| 132 |
+
| 📊 | Gradient Accumulation Steps | 4 |
|
| 133 |
+
| 🚀 | Learning Rate | 0.0001 |
|
| 134 |
+
| 🌅 | Warmup Steps | 500 |
|
| 135 |
+
| 💾 | Save Strategy | epoch |
|
| 136 |
+
| 💾 | Save Total Limit | 10 |
|
| 137 |
+
| 📊 | Evaluation Strategy | epoch |
|
| 138 |
+
| 🎯 | Best Model Metric | precision_at_15 |
|
| 139 |
+
| 📝 | Logging Strategy | steps (every 10 steps) |
|
| 140 |
+
| 🌐 | Push to Hub | True |
|
| 141 |
+
| 🌐 | Hub Model ID | deb101/mistral-7b-instruct-v0.3-mimic4-adapt-multilabel-classify |
|
| 142 |
+
| 🔢 | Steps per Epoch | 17 |
|
| 143 |
+
| 🔢 | Total Training Steps | 68 |
|
| 144 |
+
| 🔢 | Evaluation Steps | 17 |
|
| 145 |
+
| 📊 | Training Dataset Size | 567 samples 🏋️ |
|
| 146 |
+
| 📊 | Evaluation Dataset Size | 136 samples 🔍 |
|
| 147 |
+
+----------+-----------------------------+------------------------------------------------------------------+ - [multilabel_classify.py:883:log_training_args]
|
| 148 |
+
2025-06-05 15:02:42,478 - INFO - ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - [multilabel_classify.py:100:log_section]
|
| 149 |
+
2025-06-05 15:02:42,478 - INFO - + ✨ MODEL TRAINING + - [multilabel_classify.py:101:log_section]
|
| 150 |
+
2025-06-05 15:02:42,478 - INFO - ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - [multilabel_classify.py:104:log_section]
|
| 151 |
+
2025-06-05 15:02:42,479 - INFO - 🏋️ Starting model training process... - [multilabel_classify.py:3692:main]
|
| 152 |
+
2025-06-05 15:02:42,520 - INFO - We are registering the tokenizer deb101/mistral-7b-instruct-v0.3-mimic4-adapt in Custom Trainer - [multilabel_classify.py:1988:__init__]
|
| 153 |
+
2025-06-05 15:02:42,770 - INFO - 🚀 Starting Training... - [multilabel_classify.py:1642:on_train_begin]
|
| 154 |
+
2025-06-05 15:03:03,122 - INFO -
|
| 155 |
+
[36m🚂 Training Metrics (Step 10) 🚂
|
| 156 |
+
+---------------+---------+
|
| 157 |
+
| Metric | Value |
|
| 158 |
+
+===============+=========+
|
| 159 |
+
| loss | 0.6384 |
|
| 160 |
+
+---------------+---------+
|
| 161 |
+
| grad_norm | 6.84453 |
|
| 162 |
+
+---------------+---------+
|
| 163 |
+
| learning_rate | 2e-06 |
|
| 164 |
+
+---------------+---------+
|
| 165 |
+
| epoch | 0.56338 |
|
| 166 |
+
+---------------+---------+[0m - [multilabel_classify.py:1836:on_log]
|
| 167 |
+
2025-06-05 15:03:17,100 - INFO - Removing 'token_type_ids' from eval_dataset as they are not needed. - [multilabel_classify.py:2000:evaluate]
|
| 168 |
+
2025-06-05 15:03:52,220 - INFO -
|
| 169 |
+
[33m🔍 Evaluation Metrics 🔍
|
| 170 |
+
+-------------------------------+----------+
|
| 171 |
+
| Metric | Value |
|
| 172 |
+
+===============================+==========+
|
| 173 |
+
| eval_f1_micro | 0 |
|
| 174 |
+
+-------------------------------+----------+
|
| 175 |
+
| eval_f1_macro | 0 |
|
| 176 |
+
+-------------------------------+----------+
|
| 177 |
+
| eval_precision_at_5 | 0.036765 |
|
| 178 |
+
+-------------------------------+----------+
|
| 179 |
+
| eval_recall_at_5 | 0.008744 |
|
| 180 |
+
+-------------------------------+----------+
|
| 181 |
+
| eval_precision_at_8 | 0.037684 |
|
| 182 |
+
+-------------------------------+----------+
|
| 183 |
+
| eval_recall_at_8 | 0.017401 |
|
| 184 |
+
+-------------------------------+----------+
|
| 185 |
+
| eval_precision_at_15 | 0.037745 |
|
| 186 |
+
+-------------------------------+----------+
|
| 187 |
+
| eval_recall_at_15 | 0.032384 |
|
| 188 |
+
+-------------------------------+----------+
|
| 189 |
+
| eval_rare_f1_micro | 0 |
|
| 190 |
+
+-------------------------------+----------+
|
| 191 |
+
| eval_rare_f1_macro | 0 |
|
| 192 |
+
+-------------------------------+----------+
|
| 193 |
+
| eval_rare_precision | 0 |
|
| 194 |
+
+-------------------------------+----------+
|
| 195 |
+
| eval_rare_recall | 0 |
|
| 196 |
+
+-------------------------------+----------+
|
| 197 |
+
| eval_rare_precision_at_5 | 0.029412 |
|
| 198 |
+
+-------------------------------+----------+
|
| 199 |
+
| eval_rare_recall_at_5 | 0.00805 |
|
| 200 |
+
+-------------------------------+----------+
|
| 201 |
+
| eval_rare_precision_at_8 | 0.026654 |
|
| 202 |
+
+-------------------------------+----------+
|
| 203 |
+
| eval_rare_recall_at_8 | 0.010721 |
|
| 204 |
+
+-------------------------------+----------+
|
| 205 |
+
| eval_rare_precision_at_15 | 0.027451 |
|
| 206 |
+
+-------------------------------+----------+
|
| 207 |
+
| eval_rare_recall_at_15 | 0.021147 |
|
| 208 |
+
+-------------------------------+----------+
|
| 209 |
+
| eval_not_rare_f1_micro | 0.595588 |
|
| 210 |
+
+-------------------------------+----------+
|
| 211 |
+
| eval_not_rare_f1_macro | 0.373272 |
|
| 212 |
+
+-------------------------------+----------+
|
| 213 |
+
| eval_not_rare_precision | 0.595588 |
|
| 214 |
+
+-------------------------------+----------+
|
| 215 |
+
| eval_not_rare_recall | 0.595588 |
|
| 216 |
+
+-------------------------------+----------+
|
| 217 |
+
| eval_not_rare_precision_at_5 | 0.080882 |
|
| 218 |
+
+-------------------------------+----------+
|
| 219 |
+
| eval_not_rare_recall_at_5 | 0.404412 |
|
| 220 |
+
+-------------------------------+----------+
|
| 221 |
+
| eval_not_rare_precision_at_8 | 0.050551 |
|
| 222 |
+
+-------------------------------+----------+
|
| 223 |
+
| eval_not_rare_recall_at_8 | 0.404412 |
|
| 224 |
+
+-------------------------------+----------+
|
| 225 |
+
| eval_not_rare_precision_at_15 | 0.026961 |
|
| 226 |
+
+-------------------------------+----------+
|
| 227 |
+
| eval_not_rare_recall_at_15 | 0.404412 |
|
| 228 |
+
+-------------------------------+----------+
|
| 229 |
+
| eval_loss | 0.229106 |
|
| 230 |
+
+-------------------------------+----------+[0m - [multilabel_classify.py:1855:on_evaluate]
|
| 231 |
+
2025-06-05 15:03:55,736 - INFO - 💾 Model weights saved in safetensors format: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b/checkpoint-18 - [multilabel_classify.py:2093:_save]
|
| 232 |
+
2025-06-05 15:03:55,737 - INFO - ⚙️ Config saved in checkpoint: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b/checkpoint-18 - [multilabel_classify.py:2098:_save]
|
| 233 |
+
2025-06-05 15:03:55,738 - INFO - 📋 Saved files in ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b/checkpoint-18:
|
| 234 |
+
+---------+--------------------+------------+
|
| 235 |
+
| Index | Saved File | Size |
|
| 236 |
+
+=========+====================+============+
|
| 237 |
+
| 1 | training_args.bin | 0.01 MB |
|
| 238 |
+
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2025-06-05 15:04:30,351 - INFO - Removing 'token_type_ids' from eval_dataset as they are not needed. - [multilabel_classify.py:2000:evaluate]
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2025-06-05 15:05:09,029 - INFO - 💾 Model weights saved in safetensors format: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b/checkpoint-36 - [multilabel_classify.py:2093:_save]
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2025-06-05 15:05:09,030 - INFO - ⚙️ Config saved in checkpoint: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b/checkpoint-36 - [multilabel_classify.py:2098:_save]
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2025-06-05 15:05:09,031 - INFO - 📋 Saved files in ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b/checkpoint-36:
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[36m🚂 Training Metrics (Step 40) 🚂
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2025-06-05 15:06:22,738 - INFO - 💾 Model weights saved in safetensors format: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b/checkpoint-54 - [multilabel_classify.py:2093:_save]
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2025-06-05 15:06:22,739 - INFO - ⚙️ Config saved in checkpoint: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b/checkpoint-54 - [multilabel_classify.py:2098:_save]
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[36m🚂 Training Metrics (Step 60) 🚂
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2025-06-05 15:06:54,507 - INFO - ⚙️ Config saved in checkpoint: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b/checkpoint-68 - [multilabel_classify.py:2098:_save]
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| eval_not_rare_recall | 0.595588 |
|
| 561 |
+
+-------------------------------+----------+
|
| 562 |
+
| eval_not_rare_precision_at_5 | 0.080882 |
|
| 563 |
+
+-------------------------------+----------+
|
| 564 |
+
| eval_not_rare_recall_at_5 | 0.404412 |
|
| 565 |
+
+-------------------------------+----------+
|
| 566 |
+
| eval_not_rare_precision_at_8 | 0.050551 |
|
| 567 |
+
+-------------------------------+----------+
|
| 568 |
+
| eval_not_rare_recall_at_8 | 0.404412 |
|
| 569 |
+
+-------------------------------+----------+
|
| 570 |
+
| eval_not_rare_precision_at_15 | 0.026961 |
|
| 571 |
+
+-------------------------------+----------+
|
| 572 |
+
| eval_not_rare_recall_at_15 | 0.404412 |
|
| 573 |
+
+-------------------------------+----------+
|
| 574 |
+
| eval_loss | 0.104832 |
|
| 575 |
+
+-------------------------------+----------+[0m - [multilabel_classify.py:1855:on_evaluate]
|
| 576 |
+
2025-06-05 15:07:33,859 - INFO - 💾 Model weights saved in safetensors format: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b/checkpoint-68 - [multilabel_classify.py:2093:_save]
|
| 577 |
+
2025-06-05 15:07:33,860 - INFO - ⚙️ Config saved in checkpoint: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b/checkpoint-68 - [multilabel_classify.py:2098:_save]
|
| 578 |
+
2025-06-05 15:07:33,862 - INFO - 📋 Saved files in ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b/checkpoint-68:
|
| 579 |
+
+---------+--------------------+------------+
|
| 580 |
+
| Index | Saved File | Size |
|
| 581 |
+
+=========+====================+============+
|
| 582 |
+
| 1 | training_args.bin | 0.01 MB |
|
| 583 |
+
+---------+--------------------+------------+
|
| 584 |
+
| 2 | optimizer.pt | 642.30 MB |
|
| 585 |
+
+---------+--------------------+------------+
|
| 586 |
+
| 3 | model.safetensors | 4267.74 MB |
|
| 587 |
+
+---------+--------------------+------------+
|
| 588 |
+
| 4 | scaler.pt | 0.00 MB |
|
| 589 |
+
+---------+--------------------+------------+
|
| 590 |
+
| 5 | config.json | 0.00 MB |
|
| 591 |
+
+---------+--------------------+------------+
|
| 592 |
+
| 6 | scheduler.pt | 0.00 MB |
|
| 593 |
+
+---------+--------------------+------------+
|
| 594 |
+
| 7 | trainer_state.json | 0.01 MB |
|
| 595 |
+
+---------+--------------------+------------+
|
| 596 |
+
| 8 | rng_state.pth | 0.01 MB |
|
| 597 |
+
+---------+--------------------+------------+ - [multilabel_classify.py:2115:_save]
|
| 598 |
+
2025-06-05 15:07:34,327 - INFO - 📂 Loading best model from ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b/checkpoint-68 - [multilabel_classify.py:2167:_load_best_model]
|
| 599 |
+
2025-06-05 15:07:34,327 - INFO - 🖥️ Model is on device: cuda:0 - [multilabel_classify.py:2177:_load_best_model]
|
| 600 |
+
2025-06-05 15:07:34,399 - INFO - 🔑 Key order comparison:
|
| 601 |
+
+---------+--------------------------------------------+--------------------------------------------------------------------------------------+
|
| 602 |
+
| Index | Saved state_dict Keys | Model state_dict Keys |
|
| 603 |
+
+=========+============================================+======================================================================================+
|
| 604 |
+
| 1 | attention.in_proj_bias | boost_mul |
|
| 605 |
+
+---------+--------------------------------------------+--------------------------------------------------------------------------------------+
|
| 606 |
+
| 2 | attention.in_proj_weight | boost_add |
|
| 607 |
+
+---------+--------------------------------------------+--------------------------------------------------------------------------------------+
|
| 608 |
+
| 3 | attention.out_proj.bias | base_model.base_model.model.model.embed_tokens.weight |
|
| 609 |
+
+---------+--------------------------------------------+--------------------------------------------------------------------------------------+
|
| 610 |
+
| 4 | attention.out_proj.weight | base_model.base_model.model.model.layers.0.self_attn.q_proj.base_layer.weight |
|
| 611 |
+
+---------+--------------------------------------------+--------------------------------------------------------------------------------------+
|
| 612 |
+
| 5 | base_model.base_model.model.lm_head.weight | base_model.base_model.model.model.layers.0.self_attn.q_proj.base_layer.weight.absmax |
|
| 613 |
+
+---------+--------------------------------------------+--------------------------------------------------------------------------------------+ - [multilabel_classify.py:2201:_load_best_model]
|
| 614 |
+
2025-06-05 15:07:35,427 - INFO - ✅ Loaded best model weights from ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b/checkpoint-68/model.safetensors - [multilabel_classify.py:2218:_load_best_model]
|
| 615 |
+
2025-06-05 15:07:35,452 - INFO - ✔️ Weight for boost_mul matches between saved and loaded state_dict - [multilabel_classify.py:2230:_load_best_model]
|
| 616 |
+
2025-06-05 15:07:35,475 - INFO - ✔️ Weight for boost_add matches between saved and loaded state_dict - [multilabel_classify.py:2230:_load_best_model]
|
| 617 |
+
2025-06-05 15:07:35,490 - INFO -
|
| 618 |
+
[36m🚂 Training Metrics (Step 68) 🚂
|
| 619 |
+
+--------------------------+----------+
|
| 620 |
+
| Metric | Value |
|
| 621 |
+
+==========================+==========+
|
| 622 |
+
| train_runtime | 292.721 |
|
| 623 |
+
+--------------------------+----------+
|
| 624 |
+
| train_samples_per_second | 7.748 |
|
| 625 |
+
+--------------------------+----------+
|
| 626 |
+
| train_steps_per_second | 0.232 |
|
| 627 |
+
+--------------------------+----------+
|
| 628 |
+
| total_flos | 0 |
|
| 629 |
+
+--------------------------+----------+
|
| 630 |
+
| train_loss | 0.222837 |
|
| 631 |
+
+--------------------------+----------+
|
| 632 |
+
| epoch | 3.78873 |
|
| 633 |
+
+--------------------------+----------+[0m - [multilabel_classify.py:1836:on_log]
|
| 634 |
+
2025-06-05 15:07:35,490 - INFO - ✨ Training Completed! ✨ - [multilabel_classify.py:1709:on_train_end]
|
| 635 |
+
2025-06-05 15:07:35,559 - INFO - 📊 Training loss plot saved as '../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b/train_loss_plot.png' - [multilabel_classify.py:1905:on_train_end]
|
| 636 |
+
2025-06-05 15:07:35,619 - INFO - 📊 Evaluation loss plot saved as '../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b/eval_loss_plot.png' - [multilabel_classify.py:1919:on_train_end]
|
| 637 |
+
2025-06-05 15:07:35,680 - INFO - 📊 Evaluation metric plot saved as '../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b/eval_precision_at_15_plot.png' - [multilabel_classify.py:1940:on_train_end]
|
| 638 |
+
2025-06-05 15:07:35,680 - INFO - ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - [multilabel_classify.py:100:log_section]
|
| 639 |
+
2025-06-05 15:07:35,680 - INFO - + ✨ MODEL SAVING + - [multilabel_classify.py:101:log_section]
|
| 640 |
+
2025-06-05 15:07:35,680 - INFO - ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - [multilabel_classify.py:104:log_section]
|
| 641 |
+
2025-06-05 15:07:35,680 - INFO - 💾 Saving trained model and pushing to Hugging Face Hub... - [multilabel_classify.py:3706:main]
|
| 642 |
+
2025-06-05 15:07:35,680 - INFO - 📁 Creating/using output directory: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b - [multilabel_classify.py:2693:save_and_push]
|
| 643 |
+
2025-06-05 15:07:39,183 - INFO - 💾 Model weights saved in safetensors format: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b - [multilabel_classify.py:2093:_save]
|
| 644 |
+
2025-06-05 15:07:39,184 - INFO - ⚙️ Config saved in checkpoint: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b - [multilabel_classify.py:2098:_save]
|
| 645 |
+
2025-06-05 15:07:39,186 - INFO - 📋 Saved files in ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b:
|
| 646 |
+
+---------+--------------------------------------------+------------+
|
| 647 |
+
| Index | Saved File | Size |
|
| 648 |
+
+=========+============================================+============+
|
| 649 |
+
| 1 | eval_loss_plot.png | 0.03 MB |
|
| 650 |
+
+---------+--------------------------------------------+------------+
|
| 651 |
+
| 2 | training_args.bin | 0.01 MB |
|
| 652 |
+
+---------+--------------------------------------------+------------+
|
| 653 |
+
| 3 | tokenizer.model | 0.56 MB |
|
| 654 |
+
+---------+--------------------------------------------+------------+
|
| 655 |
+
| 4 | tokenizer.json | 3.50 MB |
|
| 656 |
+
+---------+--------------------------------------------+------------+
|
| 657 |
+
| 5 | model.safetensors | 4267.74 MB |
|
| 658 |
+
+---------+--------------------------------------------+------------+
|
| 659 |
+
| 6 | config.json | 0.00 MB |
|
| 660 |
+
+---------+--------------------------------------------+------------+
|
| 661 |
+
| 7 | special_tokens_map.json | 0.00 MB |
|
| 662 |
+
+---------+--------------------------------------------+------------+
|
| 663 |
+
| 8 | tokenizer_config.json | 0.13 MB |
|
| 664 |
+
+---------+--------------------------------------------+------------+
|
| 665 |
+
| 9 | train_loss_plot.png | 0.02 MB |
|
| 666 |
+
+---------+--------------------------------------------+------------+
|
| 667 |
+
| 10 | eval_precision_at_15_plot.png | 0.03 MB |
|
| 668 |
+
+---------+--------------------------------------------+------------+
|
| 669 |
+
| 11 | README.md | 0.01 MB |
|
| 670 |
+
+---------+--------------------------------------------+------------+
|
| 671 |
+
| 12 | classification_log_2025-06-05_14-33-04.log | 0.04 MB |
|
| 672 |
+
+---------+--------------------------------------------+------------+ - [multilabel_classify.py:2115:_save]
|
| 673 |
+
2025-06-05 15:07:42,412 - INFO - 💾 Model weights saved in safetensors format: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b - [multilabel_classify.py:2093:_save]
|
| 674 |
+
2025-06-05 15:07:42,413 - INFO - ⚙️ Config saved in checkpoint: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b - [multilabel_classify.py:2098:_save]
|
| 675 |
+
2025-06-05 15:07:42,415 - INFO - 📋 Saved files in ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b:
|
| 676 |
+
+---------+--------------------------------------------+------------+
|
| 677 |
+
| Index | Saved File | Size |
|
| 678 |
+
+=========+============================================+============+
|
| 679 |
+
| 1 | eval_loss_plot.png | 0.03 MB |
|
| 680 |
+
+---------+--------------------------------------------+------------+
|
| 681 |
+
| 2 | training_args.bin | 0.01 MB |
|
| 682 |
+
+---------+--------------------------------------------+------------+
|
| 683 |
+
| 3 | tokenizer.model | 0.56 MB |
|
| 684 |
+
+---------+--------------------------------------------+------------+
|
| 685 |
+
| 4 | tokenizer.json | 3.50 MB |
|
| 686 |
+
+---------+--------------------------------------------+------------+
|
| 687 |
+
| 5 | model.safetensors | 4267.74 MB |
|
| 688 |
+
+---------+--------------------------------------------+------------+
|
| 689 |
+
| 6 | config.json | 0.00 MB |
|
| 690 |
+
+---------+--------------------------------------------+------------+
|
| 691 |
+
| 7 | special_tokens_map.json | 0.00 MB |
|
| 692 |
+
+---------+--------------------------------------------+------------+
|
| 693 |
+
| 8 | tokenizer_config.json | 0.13 MB |
|
| 694 |
+
+---------+--------------------------------------------+------------+
|
| 695 |
+
| 9 | train_loss_plot.png | 0.02 MB |
|
| 696 |
+
+---------+--------------------------------------------+------------+
|
| 697 |
+
| 10 | eval_precision_at_15_plot.png | 0.03 MB |
|
| 698 |
+
+---------+--------------------------------------------+------------+
|
| 699 |
+
| 11 | README.md | 0.01 MB |
|
| 700 |
+
+---------+--------------------------------------------+------------+
|
| 701 |
+
| 12 | classification_log_2025-06-05_14-33-04.log | 0.04 MB |
|
| 702 |
+
+---------+--------------------------------------------+------------+ - [multilabel_classify.py:2115:_save]
|
| 703 |
+
2025-06-05 15:09:03,581 - INFO - 💾 Model saved to: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b - [multilabel_classify.py:2697:save_and_push]
|
| 704 |
+
2025-06-05 15:09:03,611 - INFO - 🖌️ Tokenizer saved to: ../tmp/MIMIC4_DEMO/mimic4_classify_mistral7b - [multilabel_classify.py:2701:save_and_push]
|