"""
General utility functions

Author: Shengyu Huang
Last modified: 30.11.2020
"""

import os,re,sys,json,yaml,random, argparse, torch, pickle
import torch.nn as nn
import torch.nn.functional as F
import torch.optim as optim
import numpy as np
from scipy.spatial.transform import Rotation

from sklearn.neighbors import NearestNeighbors
from scipy.spatial.distance import minkowski
_EPS = 1e-7  # To prevent division by zero


class Logger:
    def __init__(self, path):
        self.path = path
        self.fw = open(self.path+'/log','a')

    def write(self, text):
        self.fw.write(text)
        self.fw.flush()

    def close(self):
        self.fw.close()

def save_obj(obj, path ):
    """
    save a dictionary to a pickle file
    """
    with open(path, 'wb') as f:
        pickle.dump(obj, f)

def load_obj(path):
    """
    read a dictionary from a pickle file
    """
    with open(path, 'rb') as f:
        return pickle.load(f)

def load_config(path):
    """
    Loads config file:

    Args:
        path (str): path to the config file

    Returns: 
        config (dict): dictionary of the configuration parameters, merge sub_dicts

    """
    with open(path,'r') as f:
        cfg = yaml.safe_load(f)
    
    config = dict()
    for key, value in cfg.items():
        for k,v in value.items():
            config[k] = v

    return config


def setup_seed(seed):
    """
    fix random seed for deterministic training
    """
    torch.manual_seed(seed)
    torch.cuda.manual_seed_all(seed)
    np.random.seed(seed)
    random.seed(seed)
    torch.backends.cudnn.deterministic = True

def square_distance(src, dst, normalised = False):
    """
    Calculate Euclid distance between each two points.
    Args:
        src: source points, [B, N, C]
        dst: target points, [B, M, C]
    Returns:
        dist: per-point square distance, [B, N, M]
    """
    B, N, _ = src.shape
    _, M, _ = dst.shape
    dist = -2 * torch.matmul(src, dst.permute(0, 2, 1))
    if(normalised):
        dist += 2
    else:
        dist += torch.sum(src ** 2, dim=-1)[:, :, None]
        dist += torch.sum(dst ** 2, dim=-1)[:, None, :]

    dist = torch.clamp(dist, min=1e-12, max=None)
    return dist
    

def validate_gradient(model):
    """
    Confirm all the gradients are non-nan and non-inf
    """
    for name, param in model.named_parameters():
        if param.grad is not None:
            if torch.any(torch.isnan(param.grad)):
                return False
            if torch.any(torch.isinf(param.grad)):
                return False
    return True


def natural_key(string_):
    """
    Sort strings by numbers in the name
    """
    return [int(s) if s.isdigit() else s for s in re.split(r'(\d+)', string_)]
torch.cuda.manual_seed_all torch.isnan torch.clamp torch.manual_seed torch.isinf torch.sum