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README.md
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license: cc-by-4.0
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task_categories:
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- feature-extraction
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pretty_name: >-
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Revisiting Automatic Data Curation for Vision Foundation Models in Digital
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Pathology
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| TCGA-22-1017-01Z-00-DX1.9562FE79-A261-42D3-B39... | 31519 | 11064 | 3352388 | 11187 | 2 | 24 |
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**slide\_id**: Unique identifier for the slide image, **tile\_x, tile\_y**: Coordinates of the tile within the slide at level 0, the highest pyramid level. The tiles are of size `224px X 224px`at 20x magnification (=`112um X 112um`), **level\_1 to level\_4**: Hierarchical cluster labels the tile is associated with.
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2. **Visualization tool**: UMAP
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## Citation
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Please cite our publication if you use the provided data.
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```
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---
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license: cc-by-4.0
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pretty_name: >-
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Revisiting Automatic Data Curation for Vision Foundation Models in Digital
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Pathology
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| TCGA-22-1017-01Z-00-DX1.9562FE79-A261-42D3-B39... | 31519 | 11064 | 3352388 | 11187 | 2 | 24 |
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**slide\_id**: Unique identifier for the slide image, **tile\_x, tile\_y**: Coordinates of the tile within the slide at level 0, the highest pyramid level. The tiles are of size `224px X 224px`at 20x magnification (=`112um X 112um`), **level\_1 to level\_4**: Hierarchical cluster labels the tile is associated with.
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2. **Visualization tool**: We provide (1) UMAP coordinates for 2 million curated tiles in [metadata_N=2M.csv](https://huggingface.co/datasets/swiss-ai/patho-ssl-data-curation/blob/main/visualization_tool/metadata_N%3D2M.csv) for the t1 setting (62 level_4 clusters), and (2) tile images for a representative subset of 500k tiles, packaged in 10 tar files (`tiles_0000.tar`-`tiles_0009.tar`, each containing 224×224px pngs). (3) The file [metadata.csv](https://huggingface.co/datasets/swiss-ai/patho-ssl-data-curation/blob/main/visualization_tool/metadata.csv) contains metadata corresponding specifically to this 500k tile subset. We only provide the 500k tiles and not the full 2M due to file size limitations. Please download all files for usage with our visualization tool code at [Visualization Tool Github](https://github.com/lely475/patho-ssl-data-curation/tree/main/visualization_tool).
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## Citation
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Please cite our publication if you use the provided data.
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```
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