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JIANHONG OU commited on
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2 Parent(s): 99c1fc2 72646d2

Merge pull request #312 from jianhong/hicar

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  1. .gitattributes +9 -0
  2. README.md +12 -0
  3. data/genomics/homo_sapiens/T1/KD_rep1_R1.fastq.gz +3 -0
  4. data/genomics/homo_sapiens/T1/KD_rep1_R2.fastq.gz +3 -0
  5. data/genomics/homo_sapiens/T1/KD_rep2_R1.fastq.gz +3 -0
  6. data/genomics/homo_sapiens/T1/KD_rep2_R2.fastq.gz +3 -0
  7. data/genomics/homo_sapiens/T1/WT_rep1_R1.fastq.gz +3 -0
  8. data/genomics/homo_sapiens/T1/WT_rep1_R2.fastq.gz +3 -0
  9. data/genomics/homo_sapiens/T1/WT_rep2_R1.fastq.gz +3 -0
  10. data/genomics/homo_sapiens/T1/WT_rep2_R2.fastq.gz +3 -0
  11. data/genomics/homo_sapiens/T2/KD_rep1_R1.fastq.gz +3 -0
  12. data/genomics/homo_sapiens/T2/KD_rep1_R2.fastq.gz +3 -0
  13. data/genomics/homo_sapiens/T2/KD_rep2_R1.fastq.gz +3 -0
  14. data/genomics/homo_sapiens/T2/KD_rep2_R2.fastq.gz +3 -0
  15. data/genomics/homo_sapiens/T2/WT_rep1_R1.fastq.gz +3 -0
  16. data/genomics/homo_sapiens/T2/WT_rep1_R2.fastq.gz +3 -0
  17. data/genomics/homo_sapiens/T2/WT_rep2_R1.fastq.gz +3 -0
  18. data/genomics/homo_sapiens/T2/WT_rep2_R2.fastq.gz +3 -0
  19. data/genomics/homo_sapiens/mappability/wgEncodeCrgMapabilityAlign50mer.chr22.bigWig +3 -0
.gitattributes CHANGED
@@ -1 +1,10 @@
 
 
 
 
 
 
 
 
 
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  *.fastq.gz filter=lfs diff=lfs merge=lfs -text
 
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+ /data/genomics/homo_sapiens/T1/KD_rep1_R1.fastq.gz filter=lfs diff=lfs merge=lfs -text
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+ /data/genomics/homo_sapiens/T1/KD_rep1_R2.fastq.gz filter=lfs diff=lfs merge=lfs -text
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+ /data/genomics/homo_sapiens/T1/KD_rep2_R1.fastq.gz filter=lfs diff=lfs merge=lfs -text
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+ /data/genomics/homo_sapiens/T1/KD_rep2_R2.fastq.gz filter=lfs diff=lfs merge=lfs -text
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+ /data/genomics/homo_sapiens/T1/WT_rep1_R1.fastq.gz filter=lfs diff=lfs merge=lfs -text
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+ /data/genomics/homo_sapiens/T1/WT_rep1_R2.fastq.gz filter=lfs diff=lfs merge=lfs -text
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+ /data/genomics/homo_sapiens/T1/WT_rep2_R1.fastq.gz filter=lfs diff=lfs merge=lfs -text
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+ /data/genomics/homo_sapiens/T1/WT_rep2_R2.fastq.gz filter=lfs diff=lfs merge=lfs -text
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+ /data/genomics/homo_sapiens/mappability/wgEncodeCrgMapabilityAlign50mer.chr22.bigWig filter=lfs diff=lfs merge=lfs -text
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  *.fastq.gz filter=lfs diff=lfs merge=lfs -text
README.md CHANGED
@@ -14,3 +14,15 @@ nf-core/test-datasets comes with documentation in the `docs/` directory:
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  ## Support
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  For further information or help, don't hesitate to get in touch on our [Slack organisation](https://nf-co.re/join/slack) (a tool for instant messaging).
 
 
 
 
 
 
 
 
 
 
 
 
 
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  ## Support
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  For further information or help, don't hesitate to get in touch on our [Slack organisation](https://nf-co.re/join/slack) (a tool for instant messaging).
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+
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+ ## About this dataset
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+
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+ This small dataset contains reads from human chr22
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+
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+ * data/genomics/homo_sapiens/T1: technique replicates1 (real data)
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+ * WT: wild type HiCAR reads
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+ * KD: knock-down HiCAR reads
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+ * data/genomics/homo_sapiens/T2: technique replicates1 (simulated data)
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+ * WT: wild type HiCAR reads
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+ * KD: knock-down HiCAR reads
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+ * data/genomics/homo_sapiens/mappability/wgEncodeCrgMapabilityAlign50mer.chr22.bigWig: mappability of chr22.
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