Adding test GTDB metadata

testdata/ar53_metadata.tsv

@@ -0,0 +1,3 @@
+accession	ambiguous_bases	checkm_completeness	checkm_contamination	checkm_marker_count	checkm_marker_lineage	checkm_marker_set_count	checkm_strain_heterogeneity	coding_bases	coding_density	contig_count	gc_count	gc_percentage	genome_size	gtdb_genome_representative	gtdb_representative	gtdb_taxonomy	gtdb_type_designation_ncbi_taxa	gtdb_type_designation_ncbi_taxa_sources	gtdb_type_species_of_genus	l50_contigs	l50_scaffolds	longest_contig	longest_scaffold	lsu_23s_contig_len	lsu_23s_count	lsu_23s_length	lsu_23s_query_id	lsu_5s_contig_len	lsu_5s_count	lsu_5s_length	lsu_5s_query_id	lsu_silva_23s_blast_align_len	lsu_silva_23s_blast_bitscore	lsu_silva_23s_blast_evalue	lsu_silva_23s_blast_perc_identity	lsu_silva_23s_blast_subject_id	lsu_silva_23s_taxonomy	mean_contig_length	mean_scaffold_length	mimag_high_quality	mimag_low_quality	mimag_medium_quality	n50_contigs	n50_scaffolds	ncbi_assembly_level	ncbi_assembly_name	ncbi_assembly_type	ncbi_bioproject	ncbi_biosample	ncbi_contig_count	ncbi_contig_n50	ncbi_country	ncbi_date	ncbi_genbank_assembly_accession	ncbi_genome_category	ncbi_genome_representation	ncbi_isolate	ncbi_isolation_source	ncbi_lat_lon	ncbi_molecule_count	ncbi_ncrna_count	ncbi_organism_name	ncbi_protein_count	ncbi_refseq_category	ncbi_rrna_count	ncbi_scaffold_count	ncbi_scaffold_l50	ncbi_scaffold_n50	ncbi_scaffold_n75	ncbi_scaffold_n90	ncbi_seq_rel_date	ncbi_spanned_gaps	ncbi_species_taxid	ncbi_ssu_count	ncbi_strain_identifiers	ncbi_submitter	ncbi_taxid	ncbi_taxonomy	ncbi_taxonomy_unfiltered	ncbi_total_gap_length	ncbi_total_length	ncbi_translation_table	ncbi_trna_count	ncbi_type_material_designation	ncbi_ungapped_length	ncbi_unspanned_gaps	ncbi_wgs_master	protein_count	scaffold_count	ssu_contig_len	ssu_count	ssu_gg_blast_align_len	ssu_gg_blast_bitscore	ssu_gg_blast_evalue	ssu_gg_blast_perc_identity	ssu_gg_blast_subject_id	ssu_gg_taxonomy	ssu_length	ssu_query_id	ssu_silva_blast_align_len	ssu_silva_blast_bitscore	ssu_silva_blast_evalue	ssu_silva_blast_perc_identity	ssu_silva_blast_subject_id	ssu_silva_taxonomy	total_gap_length	trna_aa_count	trna_count	trna_selenocysteine_count
+GB_GCA_000008085.1	0	73.13	0	149	k__Archaea (UID2)	107	0	462902	94.2994795114945	1	154921	31.559530236206	490885	GB_GCA_000008085.1	t	d__Archaea;p__Nanoarchaeota;c__Nanoarchaeia;o__Nanoarchaeales;f__Nanoarchaeaceae;g__Nanoarchaeum;s__Nanoarchaeum equitans	type strain of species	LPSN	t	1	1	490885	490885	490885	1	2958	AE017199.1	490885	1	99	AE017199.1	2888	1592	0	77.424	APJZ01000002.49237.52085	Archaea;Nanoarchaeota;Nanoarchaeia;Nanoarchaeales;Nanopusillaceae;Candidatus Nanopusillus;Candidatus Nanopusillus sp. Nst1	490885	490885	f	f	t	490885	490885	Complete Genome	ASM808v1	na	PRJNA9599	SAMN02603208	none	none	none	2003-12-18	GCA_000008085.1	none	full	none	none	none	1	none	Nanoarchaeum equitans Kin4-M	536	na	none	1	1	490885	490885	490885	2003/12/18	0	160232	none	Kin4-M	DIVERSA	228908	d__Archaea;p__Nanoarchaeota;c__Candidatus Nanoarchaeia;o__Nanoarchaeales;f__Nanoarchaeaceae;g__Nanoarchaeum;s__Nanoarchaeum equitans	d__Archaea;x__DPANN group;p__Nanoarchaeota;c__Candidatus Nanoarchaeia;o__Nanoarchaeales;f__Nanoarchaeaceae;g__Nanoarchaeum;s__Nanoarchaeum equitans;x__Nanoarchaeum equitans Kin4-M	0	490885	none	none	none	490885	0	none	583	1	490885	1	none	none	none	none	none	none	1499	AE017199.1	1499	2769	0	100	AJ318041.1.1500	Archaea;Nanoarchaeota;Nanoarchaeia;Nanoarchaeales;Nanoarchaeaceae;Nanoarchaeum;Nanoarchaeum equitans	0	18	39	0
+GB_GCA_000016605.1	0	100	0	217	c__Thermoprotei (UID147)	168	0	1950859	89.0186569394625	1	1013036	46.2253315853813	2191517	GB_GCA_000016605.1	t	d__Archaea;p__Thermoproteota;c__Thermoprotei_A;o__Sulfolobales;f__Sulfolobaceae;g__Metallosphaera;s__Metallosphaera sedula	type strain of species	LPSN	t	1	1	2191517	2191517	2191517	1	3032	CP000682.1	none	0	none	none	3032	5600	0	100	CP008822.1706923.1709976	Archaea;Crenarchaeota;Thermoprotei;Sulfolobales;Sulfolobaceae;Metallosphaera;Metallosphaera sedula	2191517	2191517	f	f	t	2191517	2191517	Complete Genome	ASM1660v1	na	PRJNA17447	SAMN02598389	none	none	none	2007-04-25	GCA_000016605.1	none	full	none	none	none	1	none	Metallosphaera sedula DSM 5348	none	na	none	1	1	2191517	2191517	2191517	2007/04/25	0	43687	none	DSM 5348	US DOE Joint Genome Institute	399549	d__Archaea;p__Crenarchaeota;c__Thermoprotei;o__Sulfolobales;f__Sulfolobaceae;g__Metallosphaera;s__Metallosphaera sedula	d__Archaea;x__TACK group;p__Crenarchaeota;c__Thermoprotei;o__Sulfolobales;f__Sulfolobaceae;g__Metallosphaera;s__Metallosphaera sedula;x__Metallosphaera sedula DSM 5348	0	2191517	none	none	none	2191517	0	none	2391	1	2191517	1	none	none	none	none	none	none	1495	CP000682.1	1495	2761	0	100	CP012174.1705278.1706785	Archaea;Crenarchaeota;Thermoprotei;Sulfolobales;Sulfolobaceae;Metallosphaera;Metallosphaera sedula	0	19	47	0

testdata/bac120_metadata.tsv

@@ -1,6 +1,8 @@
-accession	ambiguous_bases	checkm_completeness	checkm_contamination	checkm_marker_count	checkm_marker_lineage	checkm_marker_set_count	checkm_strain_heterogeneity	coding_bases	coding_density	contig_count	gc_count	gc_percentage	genome_size	gtdb_genome_representative	gtdb_representative	gtdb_taxonomy	gtdb_type_designation	gtdb_type_designation_sources	gtdb_type_species_of_genus	l50_contigs	l50_scaffolds	longest_contig	longest_scaffold	lsu_23s_contig_len	lsu_23s_count	lsu_23s_length	lsu_23s_query_id	lsu_5s_contig_len	lsu_5s_count	lsu_5s_length	lsu_5s_query_id	lsu_silva_23s_blast_align_len	lsu_silva_23s_blast_bitscore	lsu_silva_23s_blast_evalue	lsu_silva_23s_blast_perc_identity	lsu_silva_23s_blast_subject_id	lsu_silva_23s_taxonomy	mean_contig_length	mean_scaffold_length	mimag_high_quality	mimag_low_quality	mimag_medium_quality	n50_contigs	n50_scaffolds	ncbi_assembly_level	ncbi_assembly_name	ncbi_assembly_type	ncbi_bioproject	ncbi_biosample	ncbi_contig_count	ncbi_contig_n50	ncbi_country	ncbi_date	ncbi_genbank_assembly_accession	ncbi_genome_category	ncbi_genome_representation	ncbi_isolate	ncbi_isolation_source	ncbi_lat_lon	ncbi_molecule_count	ncbi_ncrna_count	ncbi_organism_name	ncbi_protein_count	ncbi_refseq_category	ncbi_rrna_count	ncbi_scaffold_count	ncbi_scaffold_l50	ncbi_scaffold_n50	ncbi_scaffold_n75	ncbi_scaffold_n90	ncbi_seq_rel_date	ncbi_spanned_gaps	ncbi_species_taxid	ncbi_ssu_count	ncbi_strain_identifiers	ncbi_submitter	ncbi_taxid	ncbi_taxonomy	ncbi_taxonomy_unfiltered	ncbi_total_gap_length	ncbi_total_length	ncbi_translation_table	ncbi_trna_count	ncbi_type_material_designation	ncbi_ungapped_length	ncbi_unspanned_gaps	ncbi_wgs_master	protein_count	scaffold_count	ssu_contig_len	ssu_count	ssu_gg_blast_align_len	ssu_gg_blast_bitscore	ssu_gg_blast_evalue	ssu_gg_blast_perc_identity	ssu_gg_blast_subject_id	ssu_gg_taxonomy	ssu_length	ssu_query_id	ssu_silva_blast_align_len	ssu_silva_blast_bitscore	ssu_silva_blast_evalue	ssu_silva_blast_perc_identity	ssu_silva_blast_subject_id	ssu_silva_taxonomy	total_gap_length	trna_aa_count	trna_count	trna_selenocysteine_count
-GB_GCA_002687715.1	98	75.31	0	143	k__Bacteria (UID2565)	88	0	5376616	92.3442251882955	288	3903627	67.0465360130465	5822363	GB_GCA_002687715.1	t	d__Bacteria;p__Planctomycetota;c__GCA-002687715;o__GCA-002687715;f__GCA-002687715;g__GCA-2687715;s__GCA-2687715 sp002687715	not type material	none	f	73	73	74926	74926	none	0	none	none	none	0	none	none	none	none	none	none	none	none	20216	20216	f	f	t	27159	27159	Contig	ASM268771v1	na	PRJNA391943	SAMN07619727	288	27159	none	2017-10-24	GCA_002687715.1	derived from metagenome	full	ARS1434	none	none	0	0	Planctomycetes bacterium	4575	na	0	none	none	none	none	none	2017/10/24	0	2026780	0	ARS1434	Tara Oceans Consortium	2026780	d__Bacteria;p__Planctomycetes;c__;o__;f__;g__;s__	d__Bacteria;x__PVC group;p__Planctomycetes;x__unclassified Planctomycetes;s__Planctomycetes bacterium	0	5822363	11	29	none	5822363	0	NZBC00000000.1	4663	288	none	0	none	none	none	none	none	none	none	none	none	none	none	none	none	none	0	14	29	1
-GB_GCA_002688175.1	15	79.43	3.24	544	c__Gammaproteobacteria (UID4267)	284	0	2356507	90.4275620394933	84	1384405	53.1248536999615	2605961	GB_GCA_002688175.1	t	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__GCA-2729495;f__GCA-2729495;g__GCA-002729875;s__GCA-002729875 sp002688175	not type material	none	f	20	20	106947	106947	none	0	none	none	none	0	none	none	none	none	none	none	none	none	31023	31023	f	f	t	41005	41005	Contig	ASM268817v1	na	PRJNA391943	SAMN07618542	84	41005	none	2017-10-24	GCA_002688175.1	derived from metagenome	full	ARS1279	none	none	0	1	Chromatiales bacterium	2421	na	1	none	none	none	none	none	2017/10/24	0	2026725	1	ARS1279	Tara Oceans Consortium	2026725	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__;g__;s__	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;x__unclassified Chromatiales;s__Chromatiales bacterium	0	2605961	11	36	none	2605961	0	NZCC00000000.1	2461	84	6094	1	none	none	none	none	none	none	939	NZCC01000038.1	927	1400	0	94.067	AQTV01000144.6373.7900	Bacteria;Poribacteria;Candidatus Poribacteria sp. WGA-4E	0	18	36	0
-GB_GCA_002688505.1	2	77.08	0	136	k__Bacteria (UID2495)	80	0	243051	89.6288374665806	1	41722	15.3857500562372	271175	GB_GCA_002688505.1	t	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Stammera;s__Stammera capleta	not type material	none	f	1	1	271175	271175	271175	1	2926	CP024013.1	271175	1	100	CP024013.1	2918	5389	0	100	CP024013.86157.89078	Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;Candidatus Purcelliella;Enterobacteriaceae bacterium NZ1215	271175	271175	f	f	t	271175	271175	Complete Genome	ASM268850v1	na	PRJNA413589	SAMN07758087	none	none	none	2017-10-24	GCA_002688505.1	derived from metagenome	full	NZ1215	none	none	1	none	Candidatus Stammera capleta	0	na	none	none	none	none	none	none	2017/10/24	0	2608262	none	NZ1215	University of Luxembourg	2608262	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Candidatus Stammera;s__Candidatus Stammera capleta	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta	0	271175	none	none	none	271175	0	none	257	1	271175	1	none	none	none	none	none	none	1606	CP024013.1	1391	1580	0	87.419	AP018160.219472.221029	Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;endosymbionts;endosymbiont of Pachyrhynchus infernalis	0	20	29	0
-GB_GCA_002689725.1	5000	56.43	1.1	147	k__Bacteria (UID2495)	91	0	777598	95.0823841577863	62	246230	30.293486217651	817815	GB_GCA_002169685.1	f	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__TMED127;f__TMED127;g__TMED211;s__TMED211 sp002169685	not type material	none	f	22	22	33046	33046	none	0	none	none	none	0	none	none	none	none	none	none	none	none	13190	13190	f	f	t	13554	13554	Contig	ASM268972v1	na	PRJNA391943	SAMN07620281	62	13554	none	2017-10-24	GCA_002689725.1	derived from metagenome	full	MED639	none	none	0	0	Rickettsiales bacterium	870	na	0	none	none	none	none	none	2017/10/24	0	2026788	0	MED639	Tara Oceans Consortium	2026788	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales;f__;g__;s__	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales;x__unclassified Rickettsiales;s__Rickettsiales bacterium	0	817815	11	22	none	817815	0	NZHR00000000.1	894	62	none	0	none	none	none	none	none	none	none	none	none	none	none	none	none	none	0	15	21	0
-GB_GCA_002690175.1	8013	90.29	5.21	171	k__Bacteria (UID1453)	117	55.56	1761769	94.5797413908803	82	831940	44.8552639453589	1862734	GB_GCA_002380145.1	f	d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA8592;g__MedAcidi-G2A;s__MedAcidi-G2A sp002380145	not type material	none	f	16	16	139868	139868	28425	1	367	NZDQ01000008.1	28425	1	110	NZDQ01000008.1	367	678	0	100	AACY020104695.1521.4600	Bacteria;Actinobacteriota;Acidimicrobiia;Microtrichales;uncultured;marine metagenome	22716	22716	f	f	t	38545	38545	Contig	ASM269017v1	na	PRJNA391943	SAMN07618149	82	38545	none	2017-10-24	GCA_002690175.1	derived from metagenome	full	ARS1034	none	none	0	0	Acidimicrobiaceae bacterium	1861	na	2	none	none	none	none	none	2017/10/24	0	2024894	0	ARS1034	Tara Oceans Consortium	2024894	d__Bacteria;p__Actinobacteria;c__Acidimicrobiia;o__Acidimicrobiales;f__Acidimicrobiaceae;g__;s__	d__Bacteria;x__Terrabacteria group;p__Actinobacteria;c__Acidimicrobiia;o__Acidimicrobiales;f__Acidimicrobiaceae;x__unclassified Acidimicrobiaceae;s__Acidimicrobiaceae bacterium	0	1862734	11	35	none	1862734	0	NZDQ00000000.1	1890	82	none	0	none	none	none	none	none	none	none	none	none	none	none	none	none	none	0	17	34	0
+accession	ambiguous_bases	checkm_completeness	checkm_contamination	checkm_marker_count	checkm_marker_lineage	checkm_marker_set_count	checkm_strain_heterogeneity	coding_bases	coding_density	contig_count	gc_count	gc_percentage	genome_size	gtdb_genome_representative	gtdb_representative	gtdb_taxonomy	gtdb_type_designation_ncbi_taxa	gtdb_type_designation_ncbi_taxa_sources	gtdb_type_species_of_genus	l50_contigs	l50_scaffolds	longest_contig	longest_scaffold	lsu_23s_contig_len	lsu_23s_count	lsu_23s_length	lsu_23s_query_id	lsu_5s_contig_len	lsu_5s_count	lsu_5s_length	lsu_5s_query_id	lsu_silva_23s_blast_align_len	lsu_silva_23s_blast_bitscore	lsu_silva_23s_blast_evalue	lsu_silva_23s_blast_perc_identity	lsu_silva_23s_blast_subject_id	lsu_silva_23s_taxonomy	mean_contig_length	mean_scaffold_length	mimag_high_quality	mimag_low_quality	mimag_medium_quality	n50_contigs	n50_scaffolds	ncbi_assembly_level	ncbi_assembly_name	ncbi_assembly_type	ncbi_bioproject	ncbi_biosample	ncbi_contig_count	ncbi_contig_n50	ncbi_country	ncbi_date	ncbi_genbank_assembly_accession	ncbi_genome_category	ncbi_genome_representation	ncbi_isolate	ncbi_isolation_source	ncbi_lat_lon	ncbi_molecule_count	ncbi_ncrna_count	ncbi_organism_name	ncbi_protein_count	ncbi_refseq_category	ncbi_rrna_count	ncbi_scaffold_count	ncbi_scaffold_l50	ncbi_scaffold_n50	ncbi_scaffold_n75	ncbi_scaffold_n90	ncbi_seq_rel_date	ncbi_spanned_gaps	ncbi_species_taxid	ncbi_ssu_count	ncbi_strain_identifiers	ncbi_submitter	ncbi_taxid	ncbi_taxonomy	ncbi_taxonomy_unfiltered	ncbi_total_gap_length	ncbi_total_length	ncbi_translation_table	ncbi_trna_count	ncbi_type_material_designation	ncbi_ungapped_length	ncbi_unspanned_gaps	ncbi_wgs_master	protein_count	scaffold_count	ssu_contig_len	ssu_count	ssu_gg_blast_align_len	ssu_gg_blast_bitscore	ssu_gg_blast_evalue	ssu_gg_blast_perc_identity	ssu_gg_blast_subject_id	ssu_gg_taxonomy	ssu_length	ssu_query_id	ssu_silva_blast_align_len	ssu_silva_blast_bitscore	ssu_silva_blast_evalue	ssu_silva_blast_perc_identity	ssu_silva_blast_subject_id	ssu_silva_taxonomy	total_gap_length	trna_aa_count	trna_count	trna_selenocysteine_count
+RS_GCF_003697165.2	0	99.97	0.39	1173	f__Enterobacteriaceae (UID5124)	336	0	4412779	87.6449749882518	2	2549864	50.6444502440398	5034834	RS_GCF_003697165.2	t	d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli	type strain of species	LPSN	t	1	1	4903501	4903501	4903501	7	2901	NZ_CP033092.2	4903501	7	356	NZ_CP033092.2-#7	2901	5358	0	100	CU928161.2768801.2771704	Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia-Shigella;Escherichia coli S88	2517417	2517417	t	f	f	4903501	4903501	Complete Genome	ASM369716v2	na	PRJNA224116	SAMN10252913	none	none	none	2018-12-20	GCA_003697165.2	none	full	none	none	none	2	none	Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775	none	na	none	2	1	4903501	4903501	4903501	2018/12/20	0	562	none	ATCC 11775	University of Arkansas for Medical Sciences	866789	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775	0	5034834	none	none	assembly designated as neotype	5034834	0	none	4717	2	4903501	7	none	none	none	none	none	none	1538	NZ_CP033092.2	1538	2841	0	100	CP033092.3505290.3506843	Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia-Shigella;Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775	0	19	87	1
+RS_GCF_003697185.1	0	99.69	0	481	o__Rhizobiales (UID3654)	319	0	5401000	85.1949585910858	4	4407202	69.519961977936	6339577	RS_GCF_020523825.1	f	d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium;s__Methylobacterium brachiatum	not type material	none	f	1	1	5981925	5982025	5982025	5	2800	NZ_CP033231.1	5982025	5	89	NZ_CP033231.1	2800	5171	0	100	CP033231.1373079.1375899	Bacteria;Proteobacteria;Alphaproteobacteria;Rhizobiales;Beijerinckiaceae;Methylobacterium;Methylobacterium brachiatum	1584869	1584894	t	f	f	5981925	5982025	Chromosome	ASM369718v1	na	PRJNA224116	SAMN10272780	4	5981925	none	2018-10-30	GCA_003697185.1	none	full	none	none	none	4	none	Methylobacterium brachiatum	none	na	none	4	1	5982025	5982025	5982025	2018/10/30	1	269660	none	TX0642	Korea university	269660	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Methylobacteriaceae;g__Methylobacterium;s__Methylobacterium brachiatum	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Methylobacteriaceae;g__Methylobacterium;s__Methylobacterium brachiatum	100	6339577	none	none	none	6339477	0	none	6111	4	5982025	5	none	none	none	none	none	none	1480	NZ_CP033231.1-#5	1480	2734	0	100	CP033231.4355508.4357019	Bacteria;Proteobacteria;Alphaproteobacteria;Rhizobiales;Beijerinckiaceae;Methylobacterium-Methylorubrum;Methylobacterium brachiatum	100	19	55	2
+RS_GCF_003697205.1	0	98.03	0.34	1183	s__difficile (UID1169)	308	0	3335347	82.3627882397681	1	1163850	28.7400174832946	4049580	RS_GCF_001077535.1	f	d__Bacteria;p__Bacillota_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides;s__Clostridioides difficile	not type material	none	f	1	1	4049580	4049580	4049580	12	2894	NZ_CP033213.1	4049580	11	106	NZ_CP033213.1	2894	5345	0	100	MTVX01000001.1042891.1045786	Bacteria;Firmicutes;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Clostridioides;Clostridioides difficile	4049580	4049580	t	f	f	4049580	4049580	Complete Genome	ASM369720v1	na	PRJNA224116	SAMN10274208	none	none	none	2018-10-30	GCA_003697205.1	none	full	none	none	none	1	none	Clostridioides difficile	none	na	none	1	1	4049580	4049580	4049580	2018/10/30	0	1496	none	CD10010	BGI	1496	d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Peptostreptococcaceae;g__Clostridioides;s__Clostridioides difficile	d__Bacteria;x__Terrabacteria group;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Peptostreptococcaceae;g__Clostridioides;s__Clostridioides difficile	0	4049580	none	none	none	4049580	0	none	3574	1	4049580	12	none	none	none	none	none	none	1501	NZ_CP033213.1	1501	2772	0	100	CP026614.30670.32177	Bacteria;Firmicutes;Clostridia;Peptostreptococcales-Tissierellales;Peptostreptococcaceae;Clostridioides;Clostridioides difficile	0	19	90	1
+RS_GCF_004296495.1	0	64.89	0	136	k__Bacteria (UID2495)	80	0	186535	93.1203698156912	1	30680	15.3158010343657	200316	RS_GCF_017656055.1	f	d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__Nardonella dryophthoridicola	not type material	none	f	1	1	200316	200316	200316	1	2928	NZ_AP018161.1	none	0	none	none	2928	5408	0	100	AP018161.195153.198095	Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;Candidatus Purcelliella;endosymbiont of Rhynchophorus ferrugineus	200316	200316	f	f	t	200316	200316	Complete Genome	ASM429649v1	na	PRJNA224116	SAMD00080335	none	none	none	2017-10-21	GCA_004296495.1	none	full	NARRFE1	none	none	1	none	endosymbiont of Rhynchophorus ferrugineus	none	na	none	1	1	200316	200316	200316	2017/10/21	0	1971485	none	NARRFE1	The Open University of Japan	1972133	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__;f__;g__Candidatus Nardonella;s__Candidatus Nardonella dryophthoridicola	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;g__Candidatus Nardonella;s__Candidatus Nardonella dryophthoridicola;x__endosymbiont of Rhynchophorus ferrugineus	0	200316	none	none	none	200316	0	none	198	1	200316	1	none	none	none	none	none	none	1604	NZ_AP018161.1	1604	2963	0	100	AP018161.193362.194973	Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;endosymbionts;endosymbiont of Rhynchophorus ferrugineus	0	19	28	0
+RS_GCF_004296515.1	0	81.88	0.62	136	k__Bacteria (UID2495)	80	100	205834	90.9566546913597	1	39376	17.3999885107756	226299	RS_GCF_004296515.1	t	d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__Nardonella sp004296515	not type material	none	f	1	1	226299	226299	226299	2	2892	NZ_AP018160.1	none	0	none	none	2892	5341	0	100	AP018160.221162.224066	Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;symbionts2;endosymbiont of Pachyrhynchus infernalis	226299	226299	f	f	t	226299	226299	Complete Genome	ASM429651v1	na	PRJNA224116	SAMD00080338	none	none	none	2017-10-21	GCA_004296515.1	none	full	NARPIN1	none	none	1	none	endosymbiont of Pachyrhynchus infernalis	none	na	none	1	1	226299	226299	226299	2017/10/21	0	1971488	none	NARPIN1	The Open University of Japan	1971488	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__;f__;g__Candidatus Nardonella;s__	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;g__Candidatus Nardonella;s__endosymbiont of Pachyrhynchus infernalis	0	226299	none	none	none	226299	0	none	213	1	226299	2	none	none	none	none	none	none	1552	NZ_AP018160.1	1552	2867	0	100	AP018160.219472.221029	Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;endosymbionts;endosymbiont of Pachyrhynchus infernalis	0	19	32	0
+RS_GCF_004296535.1	0	73.33	0	136	k__Bacteria (UID2495)	80	0	201990	91.880040574779	1	35526	16.1598609904431	219841	RS_GCF_004296535.1	t	d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__Nardonella sp004296535	not type material	none	f	1	1	219841	219841	219841	1	2943	NZ_AP018159.1	none	0	none	none	2943	5435	0	100	AP018159.24685.27636	Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;Candidatus Purcelliella;endosymbiont of Euscepes postfasciatus	219841	219841	f	f	t	219841	219841	Complete Genome	ASM429653v1	na	PRJNA224116	SAMD00080337	none	none	none	2017-10-21	GCA_004296535.1	none	full	NAREPO1	none	none	1	none	endosymbiont of Euscepes postfasciatus	none	representative genome	none	1	1	219841	219841	219841	2017/10/21	0	650377	none	NAREPO1	The Open University of Japan	650377	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__;f__;g__;s__	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__endosymbiont of Euscepes postfasciatus	0	219841	none	none	none	219841	0	none	215	1	219841	1	none	none	none	none	none	none	1574	NZ_AP018159.1	1574	2907	0	100	AP018159.27824.29401	Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;endosymbionts;endosymbiont of Euscepes postfasciatus	0	18	26	0
+RS_GCF_004296555.1	0	99.41	0	675	o__Thiotrichales (UID4410)	243	0	1611687	88.6965351002708	101	586098	32.2549364915139	1817080	RS_GCF_000008985.1	f	d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella;s__Francisella tularensis	not type material	none	f	17	17	113051	113051	5559	1	2879	NZ_SGWP01000064.1	5559	2	111	NZ_SGWP01000064.1	2879	5317	0	100	GU073995.1.2992	Bacteria;Proteobacteria;Gammaproteobacteria;Francisellales;Francisellaceae;Francisella;Francisella tularensis subsp. mediasiatica FSC147	17990	17990	t	f	f	35350	35350	Contig	ASM429655v1	na	PRJNA224116	SAMN10924158	101	35350	none	2019-02-19	GCA_004296555.1	none	full	none	none	none	0	none	Francisella tularensis subsp. mediasiatica	none	na	none	none	none	none	none	none	2019/02/19	0	263	none	SCPM-O-B-7175(A-554)	SRCAMB	135248	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. mediasiatica	0	1817080	none	none	none	1817080	0	SGWP00000000.1	2037	101	5559	1	none	none	none	none	none	none	1524	NZ_SGWP01000064.1	1523	2813	0	100	CP000915.1823129.1824652	Bacteria;Proteobacteria;Gammaproteobacteria;Francisellales;Francisellaceae;Francisella;Francisella tularensis subsp. mediasiatica FSC147	0	19	34	0