Instruct: Identify the main and secondary category of Arxiv papers based on the titles and abstracts
Query: Residue network in protein native structure belongs to the universality
  class of three dimensional critical percolation cluster   A single protein molecule is regarded as a contact network of amino-acid
residues. Some studies have indicated that this network is a small world
network (SWN), while other results have implied that this is a fractal network
(FN). However, SWN and FN are essentially different in the dependence of the
shortest path length on the number of nodes. In this paper, we investigate this
dependence in the residue contact networks of proteins in native structures,
and show that the networks are not SWN but FN. FN is generally characterized by
several dimensions. Among them, we focus on three dimensions; the network
topological dimension $D_c$, the fractal dimension $D_f$, and the spectral
dimension $D_s$. We find that proteins universally yield $D_c \approx 1.9$,
$D_f \approx 2.5$ and $Ds \approx 1.3$. These values are in surprisingly good
coincidence with those in three dimensional critical percolation cluster. Hence
the residue contact networks in the protein native structures belong to the
universality class of three dimensional percolation cluster. The criticality is
relevant to the ambivalent nature of the protein native structures, i.e., the
coexistence of stability and instability, both of which are necessary for a
protein to function as a molecular machine or an allosteric enzyme.

36
The categories of this paper are: cmp-lg
33
The categories of this paper are: plasm-ph
18
The categories of this paper are: econ
28
The categories of this paper are: alg-geom
0
The categories of this paper are: hep-ph
24
The categories of this paper are: dg-ga
21
The categories of this paper are: adap-org
2
The categories of this paper are: math
23
The categories of this paper are: solv-int
29
The categories of this paper are: funct-an
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The categories of this paper are: q-alg
20
The categories of this paper are: acc-phys
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The categories of this paper are: eess
37
The categories of this paper are: supr-con
26
The categories of this paper are: bayes-an
11
The categories of this paper are: hep-lat