


from typing import Dict

import numpy as np
import torch

from . import residue_constants as rc
from .tensor_utils import tensor_tree_map, tree_map






def 							__lowercase   ( __lowerCAmelCase							:				Dict[str, torch.Tensor]   ):
							a__             =     []
							a__             =     []
							a__             =     []

							for rt in rc.restypes:
														a__             =     rc.restype_name_to_atomaa_names[rc.restype_atoa[rt]]
														restype_atomaa_to_atomaa_list.append([(rc.atom_order[name] if name else 0) for name in atom_names]   )
														a__             =     {name: i for i, name in enumerate(__lowerCAmelCase   )}
														restype_atomaa_to_atomaa_list.append(
														    [(atom_name_to_idxaa[name] if name in atom_name_to_idxaa else 0) for name in rc.atom_types]   )

														restype_atomaa_mask_list.append([(1.0 if name else 0.0) for name in atom_names]   )

							# Add dummy mapping for restype 'UNK'
							restype_atomaa_to_atomaa_list.append([0] * 1_4   )
							restype_atomaa_to_atomaa_list.append([0] * 3_7   )
							restype_atomaa_mask_list.append([0.0] * 1_4   )

							a__             =     torch.tensor(
							    __lowerCAmelCase					,    dtype=torch.intaa					,    device=protein['aatype'].device					,    )
							a__             =     torch.tensor(
							    __lowerCAmelCase					,    dtype=torch.intaa					,    device=protein['aatype'].device					,    )
							a__             =     torch.tensor(
							    __lowerCAmelCase					,    dtype=torch.floataa					,    device=protein['aatype'].device					,    )
							a__             =     protein['aatype'].to(torch.long   )

							# create the mapping for (residx, atom14) --> atom37, i.e. an array
							# with shape (num_res, 14) containing the atom37 indices for this protein
							a__             =     restype_atomaa_to_atomaa[protein_aatype]
							a__             =     restype_atomaa_mask[protein_aatype]

							a__             =     residx_atomaa_mask
							a__             =     residx_atomaa_to_atomaa.long()

							# create the gather indices for mapping back
							a__             =     restype_atomaa_to_atomaa[protein_aatype]
							a__             =     residx_atomaa_to_atomaa.long()

							# create the corresponding mask
							a__             =     torch.zeros([2_1, 3_7]					,    dtype=torch.floataa					,    device=protein['aatype'].device   )
							for restype, restype_letter in enumerate(rc.restypes   ):
														a__             =     rc.restype_atoa[restype_letter]
														a__             =     rc.residue_atoms[restype_name]
														for atom_name in atom_names:
																					a__             =     rc.atom_order[atom_name]
																					a__             =     1

							a__             =     restype_atomaa_mask[protein_aatype]
							a__             =     residx_atomaa_mask

							return protein






def 							__lowercase   ( __lowerCAmelCase							:				Dict[str, torch.Tensor]   ):
							a__             =     tree_map(lambda __lowerCAmelCase   : torch.tensor(__lowerCAmelCase					,    device=batch['aatype'].device   )					,    __lowerCAmelCase					,    np.ndarray   )
							a__             =     tensor_tree_map(lambda __lowerCAmelCase   : np.array(__lowerCAmelCase   )					,    make_atomaa_masks(__lowerCAmelCase   )   )
							return out








from typing import Dict, List, Optional, Union

import numpy as np

from ...image_processing_utils import BaseImageProcessor, BatchFeature, get_size_dict
from ...image_transforms import (
    center_crop,
    get_resize_output_image_size,
    normalize,
    rescale,
    resize,
    to_channel_dimension_format,
)
from ...image_utils import (
    IMAGENET_DEFAULT_MEAN,
    IMAGENET_DEFAULT_STD,
    ChannelDimension,
    ImageInput,
    PILImageResampling,
    is_batched,
    to_numpy_array,
    valid_images,
)
from ...utils import TensorType, logging


snake_case							:       Union[str, Any]     			=      logging.get_logger(__name__)







class        snake_case_   (lowerCamelCase_      ):
					UpperCAmelCase__					:    List[Any]          =			['''pixel_values''']
					def __init__(      self   :Optional[int]			,__snake_case   :bool = True			,__snake_case   :Optional[Dict[str, int]] = None			,__snake_case   :PILImageResampling = PILImageResampling.BICUBIC			,__snake_case   :bool = True			,__snake_case   :bool = True			,__snake_case   :Union[int, float] = 1 / 2_55			,__snake_case   :Dict[str, int] = None			,__snake_case   :bool = True			,__snake_case   :Optional[Union[float, List[float]]] = None			,__snake_case   :Optional[Union[float, List[float]]] = None			,**__snake_case   :Dict			,)					->    None:
												super().__init__(**__snake_case      )
												a__             =     size if size is not None else {'height': 2_24, 'width': 2_24}
												a__             =     get_size_dict(__snake_case      )
												a__             =     crop_size if crop_size is not None else {'height': 2_24, 'width': 2_24}
												a__             =     get_size_dict(__snake_case			,default_to_square=__snake_case			,param_name='crop_size'      )

												a__             =     do_resize
												a__             =     do_rescale
												a__             =     do_normalize
												a__             =     do_center_crop
												a__             =     crop_size
												a__             =     size
												a__             =     resample
												a__             =     rescale_factor
												a__             =     image_mean if image_mean is not None else IMAGENET_DEFAULT_MEAN
												a__             =     image_std if image_std is not None else IMAGENET_DEFAULT_STD
					def  lowerCamelCase__(      self   :Dict			,__snake_case   :np.ndarray			,__snake_case   :Dict[str, int]			,__snake_case   :PILImageResampling = PILImageResampling.BILINEAR			,__snake_case   :Optional[Union[str, ChannelDimension]] = None			,**__snake_case   :List[Any]			,)					->    np.ndarray:
												a__             =     get_size_dict(__snake_case      )

												if "shortest_edge" in size:
																			a__             =     get_resize_output_image_size(__snake_case			,size=size['shortest_edge']			,default_to_square=__snake_case      )
																			# size = get_resize_output_image_size(image, size["shortest_edge"], size["longest_edge"])
												elif "height" in size and "width" in size:
																			a__             =     (size['height'], size['width'])
												else:
																			raise ValueError(F'Size must contain \'height\' and \'width\' keys or \'shortest_edge\' key. Got {size.keys()}'      )
												return resize(__snake_case			,size=__snake_case			,resample=__snake_case			,data_format=__snake_case			,**__snake_case      )
					def  lowerCamelCase__(      self   :Dict			,__snake_case   :np.ndarray			,__snake_case   :Dict[str, int]			,__snake_case   :Optional[Union[str, ChannelDimension]] = None			,**__snake_case   :Any			,)					->    np.ndarray:
												a__             =     get_size_dict(__snake_case      )
												if "height" not in size or "width" not in size:
																			raise ValueError(F'The `size` parameter must contain the keys (height, width). Got {size.keys()}'      )
												return center_crop(__snake_case			,size=(size['height'], size['width'])			,data_format=__snake_case			,**__snake_case      )
					def  lowerCamelCase__(      self   :List[Any]			,__snake_case   :np.ndarray			,__snake_case   :float			,__snake_case   :Optional[Union[str, ChannelDimension]] = None			,**__snake_case   :int      )					->    np.ndarray:
												return rescale(__snake_case			,scale=__snake_case			,data_format=__snake_case			,**__snake_case      )
					def  lowerCamelCase__(      self   :Tuple			,__snake_case   :np.ndarray			,__snake_case   :Union[float, List[float]]			,__snake_case   :Union[float, List[float]]			,__snake_case   :Optional[Union[str, ChannelDimension]] = None			,**__snake_case   :Any			,)					->    np.ndarray:
												return normalize(__snake_case			,mean=__snake_case			,std=__snake_case			,data_format=__snake_case			,**__snake_case      )



					def  lowerCamelCase__(      self   :Any			,__snake_case   :ImageInput			,__snake_case   :Optional[bool] = None			,__snake_case   :Dict[str, int] = None			,__snake_case   :PILImageResampling = None			,__snake_case   :bool = None			,__snake_case   :int = None			,__snake_case   :Optional[bool] = None			,__snake_case   :Optional[float] = None			,__snake_case   :Optional[bool] = None			,__snake_case   :Optional[Union[float, List[float]]] = None			,__snake_case   :Optional[Union[float, List[float]]] = None			,__snake_case   :Optional[Union[str, TensorType]] = None			,__snake_case   :Union[str, ChannelDimension] = ChannelDimension.FIRST			,**__snake_case   :Optional[int]			,)					->    BatchFeature:
												a__             =     do_resize if do_resize is not None else self.do_resize
												a__             =     do_rescale if do_rescale is not None else self.do_rescale
												a__             =     do_normalize if do_normalize is not None else self.do_normalize
												a__             =     do_center_crop if do_center_crop is not None else self.do_center_crop
												a__             =     crop_size if crop_size is not None else self.crop_size
												a__             =     get_size_dict(__snake_case			,param_name='crop_size'			,default_to_square=__snake_case      )
												a__             =     resample if resample is not None else self.resample
												a__             =     rescale_factor if rescale_factor is not None else self.rescale_factor
												a__             =     image_mean if image_mean is not None else self.image_mean
												a__             =     image_std if image_std is not None else self.image_std

												a__             =     size if size is not None else self.size
												a__             =     get_size_dict(__snake_case      )

												if not is_batched(__snake_case      ):
																			a__             =     [images]

												if not valid_images(__snake_case      ):
																			raise ValueError(
																			    'Invalid image type. Must be of type PIL.Image.Image, numpy.ndarray, '
																			    'torch.Tensor, tf.Tensor or jax.ndarray.'      )

												if do_resize and size is None:
																			raise ValueError('Size must be specified if do_resize is True.'      )

												if do_center_crop and crop_size is None:
																			raise ValueError('Crop size must be specified if do_center_crop is True.'      )

												if do_rescale and rescale_factor is None:
																			raise ValueError('Rescale factor must be specified if do_rescale is True.'      )

												# All transformations expect numpy arrays.
												a__             =     [to_numpy_array(__snake_case      ) for image in images]

												if do_resize:
																			a__             =     [self.resize(image=__snake_case			,size=__snake_case			,resample=__snake_case      ) for image in images]

												if do_center_crop:
																			a__             =     [self.center_crop(image=__snake_case			,size=__snake_case      ) for image in images]

												if do_rescale:
																			a__             =     [self.rescale(image=__snake_case			,scale=__snake_case      ) for image in images]

												if do_normalize:
																			a__             =     [self.normalize(image=__snake_case			,mean=__snake_case			,std=__snake_case      ) for image in images]

												a__             =     [to_channel_dimension_format(__snake_case			,__snake_case      ) for image in images]

												a__             =     {'pixel_values': images}
												return BatchFeature(data=__snake_case			,tensor_type=__snake_case      )




