


import numpy as np

__lowerCamelCase   	=  [
    ['''a''', '''b''', '''c''', '''d''', '''e'''],
    ['''f''', '''g''', '''h''', '''i''', '''k'''],
    ['''l''', '''m''', '''n''', '''o''', '''p'''],
    ['''q''', '''r''', '''s''', '''t''', '''u'''],
    ['''v''', '''w''', '''x''', '''y''', '''z'''],
]


class 	a__						:

       def __init__( self   :  Optional[Any]     ):
            a_     :  Dict				      =     np.array(lowerCamelCase_     )

       def     UpperCAmelCase( self   :  Optional[Any]   ,				lowerCamelCase_   :  str     ):
            a_      ,      a_     :  Dict				      =     np.where(letter == self.SQUARE     )
            a_     :  Optional[Any]				      =     np.concatenate([indexa + 1, indexa + 1]     )
            return indexes

       def     UpperCAmelCase( self   :  str   ,				lowerCamelCase_   :  int   ,				lowerCamelCase_   :  int     ):
            return self.SQUARE[indexa - 1, indexa - 1]

       def     UpperCAmelCase( self   :  Tuple   ,				lowerCamelCase_   :  str     ):
            a_     :  Dict				      =     message.lower()
            a_     :  Any				      =     message.replace("""j"""   ,				"""i"""     )

            a_     :  Any				      =     """"""
            for letter_index in range(len(lowerCamelCase_     )     ):
                 if message[letter_index] != " ":
                      a_     :  List[Any]				      =     self.letter_to_numbers(message[letter_index]     )
                      a_     :  Union[str, Any]				      =     encoded_message + str(numbers[0]     ) + str(numbers[1]     )
                 elif message[letter_index] == " ":
                      a_     :  Union[str, Any]				      =     encoded_message + """ """

            return encoded_message

       def     UpperCAmelCase( self   :  Tuple   ,				lowerCamelCase_   :  str     ):
            a_     :  Dict				      =     message.replace(""" """   ,				"""  """     )
            a_     :  Dict				      =     """"""
            for numbers_index in range(int(len(lowerCamelCase_     ) / 2     )     ):
                 if message[numbers_index * 2] != " ":
                      a_     :  Dict				      =     message[numbers_index * 2]
                      a_     :  Optional[int]				      =     message[numbers_index * 2 + 1]

                      a_     :  List[str]				      =     self.numbers_to_letter(int(lowerCamelCase_     )   ,				int(lowerCamelCase_     )     )
                      a_     :  str				      =     decoded_message + letter
                 elif message[numbers_index * 2] == " ":
                      a_     :  Optional[int]				      =     decoded_message + """ """

            return decoded_message








from typing import Any, Dict, List, Mapping

import numpy as np
import torch

from ...utils import is_cython_available, requires_backends


if is_cython_available():
      import pyximport

      pyximport.install(setup_args={"""include_dirs""": np.get_include()})
      from . import algos_graphormer  # noqa E402






def 						_lowerCAmelCase    (					__lowerCamelCase :  Dict		,						__lowerCamelCase :  int = 512  ):



 """simple docstring"""





 __SCREAMING_SNAKE_CASE							:     int							=						x.shape[1] if len(x.shape  ) > 1 else 1
 __SCREAMING_SNAKE_CASE							:     int							=						1 + np.arange(0		,						feature_num * offset		,						__lowerCamelCase		,						dtype=np.intaa  )
 __SCREAMING_SNAKE_CASE							:     Union[str, Any]							=						x + feature_offset
 return x






def 						_lowerCAmelCase    (					__lowerCamelCase :  int		,						__lowerCamelCase :  int=True  ):



 """simple docstring"""





 requires_backends(__lowerCamelCase		,						["cython"]  )

 if keep_features and "edge_attr" in item.keys():  # edge_attr
  __SCREAMING_SNAKE_CASE							:     List[str]							=						np.asarray(item["edge_attr"]		,						dtype=np.intaa  )
 else:
  __SCREAMING_SNAKE_CASE							:     Any							=						np.ones((len(item["edge_index"][0]  ), 1)		,						dtype=np.intaa  )  # same embedding for all

 if keep_features and "node_feat" in item.keys():  # input_nodes
  __SCREAMING_SNAKE_CASE							:     Dict							=						np.asarray(item["node_feat"]		,						dtype=np.intaa  )
 else:
  __SCREAMING_SNAKE_CASE							:     Optional[Any]							=						np.ones((item["num_nodes"], 1)		,						dtype=np.intaa  )  # same embedding for all

 __SCREAMING_SNAKE_CASE							:     Any							=						np.asarray(item["edge_index"]		,						dtype=np.intaa  )

 __SCREAMING_SNAKE_CASE							:     Any							=						convert_to_single_emb(__lowerCamelCase  ) + 1
 __SCREAMING_SNAKE_CASE							:     Optional[Any]							=						item["num_nodes"]

 if len(edge_attr.shape  ) == 1:
  __SCREAMING_SNAKE_CASE							:     Any							=						edge_attr[:, None]
 __SCREAMING_SNAKE_CASE							:     List[Any]							=						np.zeros([num_nodes, num_nodes, edge_attr.shape[-1]]		,						dtype=np.intaa  )
 __SCREAMING_SNAKE_CASE							:     Union[str, Any]							=						convert_to_single_emb(__lowerCamelCase  ) + 1

 # node adj matrix [num_nodes, num_nodes] bool
 __SCREAMING_SNAKE_CASE							:     int							=						np.zeros([num_nodes, num_nodes]		,						dtype=__lowerCamelCase  )
 __SCREAMING_SNAKE_CASE							:     List[Any]							=						True

 __SCREAMING_SNAKE_CASE,		__SCREAMING_SNAKE_CASE							:     str							=						algos_graphormer.floyd_warshall(__lowerCamelCase  )
 __SCREAMING_SNAKE_CASE							:     Tuple							=						np.amax(__lowerCamelCase  )

 __SCREAMING_SNAKE_CASE							:     str							=						algos_graphormer.gen_edge_input(__lowerCamelCase		,						__lowerCamelCase		,						__lowerCamelCase  )
 __SCREAMING_SNAKE_CASE							:     Optional[int]							=						np.zeros([num_nodes + 1, num_nodes + 1]		,						dtype=np.single  )  # with graph token

 # combine
 __SCREAMING_SNAKE_CASE							:     Union[str, Any]							=						input_nodes + 1  # we shift all indices by one for padding
 __SCREAMING_SNAKE_CASE							:     Dict							=						attn_bias
 __SCREAMING_SNAKE_CASE							:     Tuple							=						attn_edge_type
 __SCREAMING_SNAKE_CASE							:     Any							=						shortest_path_result.astype(np.intaa  ) + 1  # we shift all indices by one for padding
 __SCREAMING_SNAKE_CASE							:     int							=						np.sum(__lowerCamelCase		,						axis=1  ).reshape(-1  ) + 1  # we shift all indices by one for padding
 __SCREAMING_SNAKE_CASE							:     List[Any]							=						item["in_degree"]  # for undirected graph
 __SCREAMING_SNAKE_CASE							:     List[Any]							=						input_edges + 1  # we shift all indices by one for padding
 if "labels" not in item:
  __SCREAMING_SNAKE_CASE							:     Any							=						item["y"]

 return item






class    _SCREAMING_SNAKE_CASE						:





     def __init__(							self			:				str  ,	UpperCamelCase			:				List[str]=2_0  ,	UpperCamelCase			:				Dict=False					)->Any:
      if not is_cython_available():
       raise ImportError("Graphormer preprocessing needs Cython (pyximport)"					)

      __SCREAMING_SNAKE_CASE							:     List[str]							=						spatial_pos_max
      __SCREAMING_SNAKE_CASE							:     Dict							=						on_the_fly_processing






     def __call__(							self			:				Optional[int]  ,	UpperCamelCase			:				List[dict]					)->Dict[str, Any]:
      if self.on_the_fly_processing:
       __SCREAMING_SNAKE_CASE							:     Tuple							=						[preprocess_item(UpperCamelCase					) for i in features]

      if not isinstance(features[0]  ,	UpperCamelCase					):
       __SCREAMING_SNAKE_CASE							:     List[Any]							=						[vars(UpperCamelCase					) for f in features]
      __SCREAMING_SNAKE_CASE							:     str							=						{}

      __SCREAMING_SNAKE_CASE							:     int							=						max(len(i["input_nodes"]					) for i in features					)
      __SCREAMING_SNAKE_CASE							:     Optional[Any]							=						len(features[0]["input_nodes"][0]					)
      __SCREAMING_SNAKE_CASE							:     Any							=						len(features[0]["attn_edge_type"][0][0]					)
      __SCREAMING_SNAKE_CASE							:     List[Any]							=						max(len(i["input_edges"][0][0]					) for i in features					)
      __SCREAMING_SNAKE_CASE							:     Dict							=						len(features[0]["input_edges"][0][0][0]					)
      __SCREAMING_SNAKE_CASE							:     Union[str, Any]							=						len(UpperCamelCase					)

      __SCREAMING_SNAKE_CASE							:     List[Any]							=						torch.zeros(UpperCamelCase  ,	max_node_num + 1  ,	max_node_num + 1  ,	dtype=torch.float					)
      __SCREAMING_SNAKE_CASE							:     Dict							=						torch.zeros(UpperCamelCase  ,	UpperCamelCase  ,	UpperCamelCase  ,	UpperCamelCase  ,	dtype=torch.long					)
      __SCREAMING_SNAKE_CASE							:     List[str]							=						torch.zeros(UpperCamelCase  ,	UpperCamelCase  ,	UpperCamelCase  ,	dtype=torch.long					)
      __SCREAMING_SNAKE_CASE							:     Any							=						torch.zeros(UpperCamelCase  ,	UpperCamelCase  ,	dtype=torch.long					)
      __SCREAMING_SNAKE_CASE							:     Union[str, Any]							=						torch.zeros(UpperCamelCase  ,	UpperCamelCase  ,	UpperCamelCase  ,	dtype=torch.long					)
      __SCREAMING_SNAKE_CASE							:     int							=						torch.zeros(
          UpperCamelCase  ,	UpperCamelCase  ,	UpperCamelCase  ,	UpperCamelCase  ,	UpperCamelCase  ,	dtype=torch.long					)

      for ix, f in enumerate(UpperCamelCase					):
       for k in ["attn_bias", "attn_edge_type", "spatial_pos", "in_degree", "input_nodes", "input_edges"]:
        __SCREAMING_SNAKE_CASE							:     List[str]							=						torch.tensor(f[k]					)

       if len(f["attn_bias"][1:, 1:][f["spatial_pos"] >= self.spatial_pos_max]					) > 0:
        __SCREAMING_SNAKE_CASE							:     int							=						float("-inf"					)

       __SCREAMING_SNAKE_CASE							:     str							=						f["attn_bias"]
       __SCREAMING_SNAKE_CASE							:     Tuple							=						f[
           "attn_edge_type"
       ]
       __SCREAMING_SNAKE_CASE							:     Dict							=						f["spatial_pos"]
       __SCREAMING_SNAKE_CASE							:     int							=						f["in_degree"]
       __SCREAMING_SNAKE_CASE							:     Tuple							=						f["input_nodes"]
       __SCREAMING_SNAKE_CASE							:     List[str]							=						f["input_edges"]

      __SCREAMING_SNAKE_CASE							:     Any							=						batch["in_degree"]

      __SCREAMING_SNAKE_CASE							:     int							=						features[0]["labels"]
      if len(UpperCamelCase					) == 1:  # one task
       if isinstance(sample[0]  ,	UpperCamelCase					):  # regression
        __SCREAMING_SNAKE_CASE							:     Union[str, Any]							=						torch.from_numpy(np.concatenate([i["labels"] for i in features]					)					)
       else:  # binary classification
        __SCREAMING_SNAKE_CASE							:     Optional[int]							=						torch.from_numpy(np.concatenate([i["labels"] for i in features]					)					)
      else:  # multi task classification, left to float to keep the NaNs
       __SCREAMING_SNAKE_CASE							:     int							=						torch.from_numpy(np.stack([i["labels"] for i in features]  ,	axis=0					)					)

      return batch






