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README.md
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features:
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- name: node_feat
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sequence:
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sequence: int64
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- name: edge_index
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sequence:
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sequence: int64
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- name: edge_attr
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sequence:
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sequence: int64
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- name: y
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sequence: float64
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- name: num_nodes
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dtype: int64
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splits:
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- name: train
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num_bytes: 8491164
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num_examples: 7836
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- name: val
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num_bytes: 1739548
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num_examples: 998
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- name: test
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num_bytes: 2093540
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num_examples: 999
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download_size: 581912
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dataset_size: 12324252
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---
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# Dataset Card for "AQSOL"
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---
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license: mit
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---
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# Dataset Card for AQSOL
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## Table of Contents
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- [Table of Contents](#table-of-contents)
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- [Dataset Description](#dataset-description)
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- [Dataset Summary](#dataset-summary)
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- [Supported Tasks and Leaderboards](#supported-tasks-and-leaderboards)
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- [External Use](#external-use)
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- [PyGeometric](#pygeometric)
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- [Dataset Structure](#dataset-structure)
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- [Data Properties](#data-properties)
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- [Data Fields](#data-fields)
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- [Data Splits](#data-splits)
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- [Additional Information](#additional-information)
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- [Licensing Information](#licensing-information)
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- [Citation Information](#citation-information)
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- [Contributions](#contributions)
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## Dataset Description
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- **[Homepage](https://github.com/graphdeeplearning/benchmarking-gnns)**
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- **Paper:**: (see citation)
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### Dataset Summary
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The AQSOL dataset comes "from the Benchmarking Graph Neural Networks paper based on AqSolDB, a standardized database of 9,982 molecular graphs with their aqueous solubility values, collected from 9 different data sources" (PyGeometric doc).
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### Supported Tasks and Leaderboards
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`AQSOL` should be used for graph regression, on aqueous solubility.
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## External Use
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### PyGeometric
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To load in PyGeometric, do the following:
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```python
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from datasets import load_dataset
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from torch_geometric.data import Data
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from torch_geometric.loader import DataLoader
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dataset_hf = load_dataset("graphs-datasets/<mydataset>")
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# For the train set (replace by valid or test as needed)
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dataset_pg_list = [Data(graph) for graph in dataset_hf["train"]]
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dataset_pg = DataLoader(dataset_pg_list)
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```
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## Dataset Structure
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### Data Properties
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| property | value |
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|---|---|
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| #graphs | 9,833 |
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| average #nodes | 17.6 |
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| average #edges | 35.8 |
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### Data Fields
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Each row of a given file is a graph, with:
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- `node_feat` (list: #nodes x #node-features): nodes
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- `edge_index` (list: 2 x #edges): pairs of nodes constituting edges
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- `edge_attr` (list: #edges x #edge-features): for the aforementioned edges, contains their features
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- `y` (list: #labels): contains the number of labels available to predict
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- `num_nodes` (int): number of nodes of the graph
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- `pos` (list: 2 x #node): positional information of each node
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### Data Splits
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This data is split. It comes from the PyGeometric version of the dataset.
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## Additional Information
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### Licensing Information
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The dataset has been released under MIT license.
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### Citation Information
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```
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@article{DBLP:journals/corr/abs-2003-00982,
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author = {Vijay Prakash Dwivedi and
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Chaitanya K. Joshi and
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Thomas Laurent and
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Yoshua Bengio and
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Xavier Bresson},
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title = {Benchmarking Graph Neural Networks},
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journal = {CoRR},
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volume = {abs/2003.00982},
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year = {2020},
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url = {https://arxiv.org/abs/2003.00982},
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eprinttype = {arXiv},
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eprint = {2003.00982},
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timestamp = {Sat, 23 Jan 2021 01:14:30 +0100},
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biburl = {https://dblp.org/rec/journals/corr/abs-2003-00982.bib},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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}
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```
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