What is the Catholic Church's official position on the Spanish Inquisition? The Spanish Inquisition seems to have had plenty of support from the Universal Inquisition at the time, but what is the present Vatican's view? Has the Church repudiated the Inquisition?
Yes. The Catholic Church has repudiated the Spanish Inquisition. In fact the late Pope John Paul II has apologized for the atrocities committed during the Spanish inquisition. 

In the Apostolic letter "TERTIO MILLENNIO ADVENIENTE" he made this apology:


  Hence it is appropriate that as the second millennium of Christianity draws to a close the Church should become ever more fully conscious of the sinfulness of her children, recalling all those times in history when they departed from the spirit of Christ and His Gospel and, instead of offering to the world the witness of a life inspired by the values of her faith, indulged in ways of thinking and acting which were truly forms of counter-witness and scandal. Although she is holy because of her incorporation into Christ, the Church does not tire of doing penance. Before God and man, she always acknowledges as her own her sinful sons and daughters.


He also reiterated his apology in his letter to Cardinal Roger Etchegaray on the occasion of the release of the "Report of the International Symposium on the Inquisition".