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@misc{NekBox,
	title={{NekBox} v2.0.0},
	year={2015},
	url={https://github.com/Nek5000/NekBox/releases/tag/v2.0.0},
	doi = {10.5281/zenodo.35258}
}

@book{argonne:nekdoc,
	author = {{Fischer {\emph{et al.}}}, P.},
	title = {Nek5000 User Documentation},
	publisher = {Argonne National Laboratory},
	year = {2016},
	url = {https://nek5000.mcs.anl.gov/documentation/}
}

@book{fischer:hom,
	author = "{Deville {\emph{et al.}}}, <NAME>.",
	title = {High-Order Methods for Incompressible Fluid Flow},
	publisher = {Cambridge University Press},
	year = {2002},
	isbn = {9780511546792},
	note = {Cambridge Books Online},
}

@book{ghiaasiaan2011convective,
  title={Convective heat and mass transfer},
  author={<NAME>},
  year={2011},
  publisher={Cambridge University Press}
}

@article{roths2001generalized,
  title={A generalized regularization method for nonlinear ill-posed problems enhanced for nonlinear regularization terms},
  author={<NAME> and <NAME> and <NAME> and <NAME>},
  journal={Computer physics communications},
  volume={139},
  number={3},
  pages={279--296},
  year={2001},
  publisher={Elsevier}
}

@article{marquardt1975ridge,
  title={Ridge regression in practice},
  author={<NAME> and Snee, <NAME>},
  journal={The American Statistician},
  volume={29},
  number={1},
  pages={3--20},
  year={1975},
  publisher={Taylor \& Francis}
}

@book{Griffiths1999,
author = {<NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop//Griffiths - 1999 - Introduction to electrodynamics.pdf:pdf},
publisher = {Prentice Hall New Jersey;},
title = {{Introduction to electrodynamics}},
url = {http://www.mendeley.com/research/introduction-quantum-mechanics-1/ http://elib.tu-darmstadt.de/tocs/188898514.pdf http://www.ketab.ir/DataBase/BookPdf/86201023.pdf http://onlinelibrary.wiley.com/doi/10.1002/9783527635467.fmatter/summary},
volume = {3},
year = {1999}
}
@article{doi:10.1080/14685240902870448,
author = {<NAME> and Ristorcelli, <NAME> and Gore, <NAME> and Dean, <NAME> and Cabot, <NAME> and Cook, <NAME>},
doi = {10.1080/14685240902870448},
journal = {Journal of Turbulence},
pages = {N13},
title = {{High-Reynolds number Rayleigh–Taylor turbulence}},
url = {http://dx.doi.org/10.1080/14685240902870448},
year = {2009}
}
@article{Dean2004,
author = {<NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Dean, Ghemawat - 2004 - MapReduce simplified data processing on large clusters.pdf:pdf},
journal = {Communications of the ACM},
pages = {1--13},
title = {{MapReduce: simplified data processing on large clusters}},
url = {http://dl.acm.org/citation.cfm?id=1327492},
year = {2004}
}
@article{Perdew1996,
author = {<NAME>. and <NAME> and Ernzerhof, Matthias},
file = {:home/maxhutch/Documents/Mendeley Desktop/Perdew, <NAME> - 1996 - Generalized gradient approximation made simple.pdf:pdf},
issn = {1079-7114},
journal = {Physical Review Letters},
month = {oct},
number = {18},
pages = {3865--3868},
pmid = {10062328},
publisher = {APS},
title = {{Generalized gradient approximation made simple}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.77.3865},
volume = {77},
year = {1996}
}
@article{Hutchinson,
author = {<NAME>. and <NAME>.},
journal = {in preparation},
title = {{Self-consistent Shirley Compact Basis}}
}
@article{Hutchinson2016,
author = {<NAME>.},
journal = {in preparation},
title = {{Direct numerical simulation of single mode three-dimensional Rayleigh-Taylor experiments}}
}
@article{Brown2008,
archivePrefix = {arXiv},
arxivId = {arXiv:0807.3193v1},
author = {<NAME>},
eprint = {arXiv:0807.3193v1},
file = {:home/maxhutch/Documents/Mendeley Desktop/Brown - 2008 - A model of diffusion in a potential well for the dynamics of the large-scale circulation in turbulent Rayleigh-Benard con.pdf:pdf},
journal = {Physics of Fluids},
pages = {1--43},
title = {{A model of diffusion in a potential well for the dynamics of the large-scale circulation in turbulent Rayleigh-Benard convection}},
url = {http://link.aip.org/link/?PHFLE6/20/075101/1},
year = {2008}
}
@article{Yu2011,
author = {<NAME> and <NAME> and <NAME>},
doi = {10.1016/j.ces.2011.01.019},
file = {:home/maxhutch/Documents/Mendeley Desktop/Yu, <NAME> - 2011 - Numerical simulation of bubble interactions using an adaptive lattice Boltzmann method.pdf:pdf},
issn = {00092509},
journal = {Chemical Engineering Science},
keywords = {Adaptive mesh refinement,Bubble dynamics,Bubble interaction,Gas–liquid flow,Lattice Boltzmann method,Multiphase flow},
month = {jul},
number = {14},
pages = {3441--3451},
publisher = {Elsevier},
title = {{Numerical simulation of bubble interactions using an adaptive lattice Boltzmann method}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0009250911000297},
volume = {66},
year = {2011}
}
@article{Maintz2011,
author = {<NAME> <NAME>},
doi = {10.1016/j.cpc.2011.03.010},
file = {:home/maxhutch/Documents/Mendeley Desktop/Maintz, <NAME> - 2011 - Speeding up plane-wave electronic-structure calculations using graphics-processing units.pdf:pdf},
issn = {0010-4655},
journal = {Computer Physics Communications},
keywords = {density-functional theory,electronic structure},
pages = {1--7},
publisher = {Elsevier B.V.},
title = {{Speeding up plane-wave electronic-structure calculations using graphics-processing units}},
url = {http://dx.doi.org/10.1016/j.cpc.2011.03.010},
volume = {1},
year = {2011}
}
@article{Burrows1994,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Burrows - 1994 - A Block-sorting Lossless Data Compression Algorithm.pdf:pdf},
journal = {Systems Research},
title = {{A Block-sorting Lossless Data Compression Algorithm}},
url = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.141.5254},
year = {1994}
}
@techreport{Skinner2005,
author = {<NAME>},
booktitle = {Source},
file = {:home/maxhutch/Documents/Mendeley Desktop/Skinner - 2005 - Performance monitoring of parallel scientific applications.pdf:pdf},
institution = {Lawrence Berkeley National Laboratory},
title = {{Performance monitoring of parallel scientific applications}},
url = {http://escholarship.org/uc/item/55t52673.pdf},
year = {2005}
}
@article{Fischer2002,
author = {<NAME> and <NAME> and <NAME>},
file = {:tmp/art{\%}3A10.1023{\%}2FA{\%}3A1015188211796.pdf:pdf},
journal = {Journal of scientific computing},
keywords = {biofluid dynamics,filtering,incompressible navier,nonconforming methods,spectral elements,stokes},
number = {December},
pages = {81--98},
title = {{Spectral element methods for transitional flows in complex geometries}},
url = {http://link.springer.com/article/10.1023/A:1015188211796},
volume = {17},
year = {2002}
}
@article{Sharp1984,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Sharp - 1984 - An overview of Rayleigh-Taylor instability.pdf:pdf},
journal = {Physica D: Nonlinear Phenomena},
pages = {3--18},
title = {{An overview of Rayleigh-Taylor instability}},
url = {http://www.sciencedirect.com/science/article/pii/0167278984905104},
year = {1984}
}
@article{Luttinger1955a,
author = {Luttinger, <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Luttinger, Kohn - 1955 - Motion of electrons and holes in perturbed periodic fields.pdf:pdf},
journal = {Physical Review},
number = {1950},
title = {{Motion of electrons and holes in perturbed periodic fields}},
url = {http://prola.aps.org/abstract/PR/v97/i4/p869{\_}1},
volume = {173},
year = {1955}
}
@article{Jordan2012,
author = {<NAME> <NAME> <NAME> <NAME>},
doi = {10.1016/j.jcp.2012.04.010},
file = {:home/maxhutch/Documents/Mendeley Desktop/Jordan et al. - 2012 - Fast iterative interior eigensolver for millions of atoms.pdf:pdf},
issn = {00219991},
journal = {Journal of Computational Physics},
keywords = {electronic structure calculations},
month = {may},
number = {14},
pages = {4836--4847},
publisher = {Elsevier Inc.},
title = {{Fast iterative interior eigensolver for millions of atoms}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0021999112001829},
volume = {231},
year = {2012}
}
@article{Glimm1991,
author = {<NAME> <NAME>, DH},
file = {:home/maxhutch/Documents/Mendeley Desktop//Glimm, Zhang, Sharp - 1991 - The renormalization group dynamics of chaotic mixing of unstable interfaces.pdf:pdf},
journal = {Physics of Fluids A: Fluid Dynamics},
number = {May 2013},
pages = {1333--1335},
title = {{The renormalization group dynamics of chaotic mixing of unstable interfaces}},
url = {http://link.aip.org/link/?PFADEB/3/1333/1},
year = {1991}
}
@article{Slater1954,
author = {<NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Slater, Koster - 1954 - Simplified LCAO method for the periodic potential problem.pdf:pdf},
journal = {Physical Review},
title = {{Simplified LCAO method for the periodic potential problem}},
url = {http://prola.aps.org/abstract/PR/v94/i6/p1498{\_}1},
volume = {94},
year = {1954}
}
@book{Hennessey2007,
author = {<NAME> <NAME>},
booktitle = {Journal of hazardous materials},
file = {:home/maxhutch/Documents/Mendeley Desktop/Hennessey, Patterson - 2007 - Computer Architecture, A Quantitative Approach.pdf:pdf},
issn = {1873-3336},
month = {may},
number = {1-3},
pmid = {20064690},
title = {{Computer Architecture, A Quantitative Approach}},
volume = {177},
year = {2007}
}
@book{Johns2005,
author = {<NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/Johns - 2005 - Analytical mechanics for relativity and quantum mechanics.pdf:pdf},
publisher = {Oxford University Press, USA},
title = {{Analytical mechanics for relativity and quantum mechanics}},
url = {http://scholar.google.com/scholar?hl=en{\&}btnG=Search{\&}q=intitle:Analytical+Mechanics+for+Relativity+and+Quantum+Mechanics{\#}0},
year = {2005}
}
@article{Ranjan2011,
author = {<NAME> and <NAME> and Bonazza, Riccardo},
doi = {10.1146/annurev-fluid-122109-160744},
file = {:home/maxhutch/Documents/Mendeley Desktop/Ranjan, Oakley, Bonazza - 2011 - Shock-Bubble Interactions.pdf:pdf},
issn = {0066-4189},
journal = {Annual Review of Fluid Mechanics},
keywords = {dynamics,shock tubes,shock-induced turbulence,shock-wave interaction,supersonic flows,vortex},
month = {jan},
number = {1},
pages = {117--140},
title = {{Shock-Bubble Interactions}},
url = {http://www.annualreviews.org/doi/abs/10.1146/annurev-fluid-122109-160744},
volume = {43},
year = {2011}
}
@article{Gillespie1976,
author = {<NAME>.},
doi = {10.1016/0021-9991(76)90041-3},
file = {:home/maxhutch/Documents/Mendeley Desktop/Gillespie - 1976 - A general method for numerically simulating the stochastic time evolution of coupled chemical reactions.pdf:pdf},
issn = {0021-9991},
journal = {Journal of computational physics},
month = {dec},
number = {4},
pages = {403--434},
publisher = {Elsevier},
title = {{A general method for numerically simulating the stochastic time evolution of coupled chemical reactions}},
url = {http://linkinghub.elsevier.com/retrieve/pii/0021999176900413},
volume = {22},
year = {1976}
}
@article{Guerra1998,
author = {<NAME> and <NAME>},
doi = {10.1007/s002149800m26},
file = {:home/maxhutch/Documents/Mendeley Desktop/Guerra, Snijders - 1998 - Towards an order-N DFT method.pdf:pdf},
journal = {{\ldots} Theoretica Chimica Acta {\ldots}},
keywords = {density functional theory,linear scaling},
pages = {391--403},
title = {{Towards an order-N DFT method}},
url = {http://www.springerlink.com/index/h90t60u4e39mqkrl.pdf},
year = {1998}
}
@article{Dest04,
author = {<NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Destainville, <NAME> - 2004 - A formula for the number of tilings of an octagon by rhombi.pdf:pdf},
issn = {0304-3975},
journal = {Theoretical Computer Science},
keywords = {centro-symmetric octagon,exact enumeration,gessel-viennot method,random tilings,rhombus tilings},
number = {1-3},
pages = {71--81},
publisher = {Elsevier},
title = {{A formula for the number of tilings of an octagon by rhombi}},
volume = {319},
year = {2004}
}
@book{Stephenson1999,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Stephenson - 1999 - In the beginning... was the command line.pdf:pdf},
isbn = {0380815931},
pages = {1--65},
publisher = {Harper Perennial},
title = {{In the beginning... was the command line}},
url = {http://books.google.com/books?hl=en{\&}lr={\&}id=OmnF5MGRNn8C{\&}oi=fnd{\&}pg=PA1{\&}dq=In+the+Beginning+was+the+Command+Line{\&}ots=XTV7QMZwIE{\&}sig=S-kQewBRJseH{\_}3OllIZq0bGnhkM},
year = {1999}
}
@article{Mei2000,
author = {<NAME> <NAME>},
doi = {10.1006/jcph.2000.6522},
file = {:home/maxhutch/Documents/Mendeley Desktop/Mei et al. - 2000 - Lattice Boltzmann Method for 3-D Flows with Curved Boundary.pdf:pdf},
issn = {00219991},
journal = {Journal of Computational Physics},
keywords = {3-d flows,accuracy,boundary condition for curved,geometries,lattice boltzmann equation},
month = {jul},
number = {2},
pages = {680--699},
title = {{Lattice Boltzmann Method for 3-D Flows with Curved Boundary}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0021999100965227},
volume = {161},
year = {2000}
}
@techreport{Pawlowski2011,
author = {Pawlowski, <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Pawlowski - 2011 - Hybrid Memory Cube (HMC).pdf:pdf},
pages = {1--24},
title = {{Hybrid Memory Cube (HMC)}},
year = {2011}
}
@article{Wang2012,
author = {<NAME> <NAME>},
doi = {10.1103/PhysRevB.85.195320},
file = {:home/maxhutch/Documents/Mendeley Desktop/Wang et al. - 2012 - Dirac semimetal and topological phase transitions in A{\_}{\{}3{\}}Bi (A=Na, K, Rb).pdf:pdf},
issn = {1098-0121},
journal = {Physical Review B},
month = {may},
number = {19},
pages = {195320},
title = {{Dirac semimetal and topological phase transitions in A{\_}{\{}3{\}}Bi (A=Na, K, Rb)}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.85.195320},
volume = {85},
year = {2012}
}
@article{Meshkov1969,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Meshkov - 1969 - Instability of the interface of two gases accelerated by a shock wave.pdf:pdf},
journal = {Fluid Dynamics},
number = {5},
pages = {101--104},
title = {{Instability of the interface of two gases accelerated by a shock wave}},
url = {http://link.springer.com/article/10.1007/BF01015969},
volume = {4},
year = {1969}
}
@article{Dimonte2005,
author = {<NAME> <NAME> <NAME>. and <NAME>. and <NAME>.},
doi = {10.1063/1.1871952},
file = {:home/maxhutch/Documents/Mendeley Desktop//Dimonte et al. - 2005 - Recent advances in the turbulent Rayleigh–Taylor instability.pdf:pdf},
issn = {1070664X},
journal = {Physics of Plasmas},
number = {5},
pages = {056301},
title = {{Recent advances in the turbulent Rayleigh–Taylor instability}},
url = {http://link.aip.org/link/PHPAEN/v12/i5/p056301/s1{\&}Agg=doi},
volume = {12},
year = {2005}
}
@article{Chan2008,
author = {<NAME>. and <NAME>. and Cohen, <NAME>.},
doi = {10.1103/PhysRevB.77.235430},
file = {:home/maxhutch/Documents/Mendeley Desktop/Chan, Neaton, Cohen - 2008 - First-principles study of metal adatom adsorption on graphene.pdf:pdf},
issn = {1098-0121},
journal = {Physical Review B},
month = {jun},
number = {23},
pages = {235430},
title = {{First-principles study of metal adatom adsorption on graphene}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.77.235430},
volume = {77},
year = {2008}
}
@article{Pickard2011,
author = {Pickard, <NAME>. and <NAME>.},
doi = {10.1103/PhysRevLett.107.087201},
file = {:home/maxhutch/Documents/Mendeley Desktop/Pickard, Needs - 2011 - Predicted Pressure-Induced s-Band Ferromagnetism in Alkali Metals.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {aug},
number = {8},
pages = {1--5},
title = {{Predicted Pressure-Induced s-Band Ferromagnetism in Alkali Metals}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.107.087201},
volume = {107},
year = {2011}
}
@article{Prendergast2009a,
archivePrefix = {arXiv},
arxivId = {arXiv:0908.3876v2},
author = {<NAME> <NAME>.},
eprint = {arXiv:0908.3876v2},
file = {:home/maxhutch/Documents/Mendeley Desktop/Prendergast, Louie - 2009 - Shirley Interpolation-Optimal basis sets for detailed Brillouin zone integrations revisited.pdf:pdf},
journal = {Arxiv preprint arXiv:0908.3876},
title = {{Shirley Interpolation-Optimal basis sets for detailed Brillouin zone integrations revisited}},
url = {http://arxiv.org/abs/0908.3876},
year = {2009}
}
@article{Pardo2009,
author = {<NAME> <NAME>},
doi = {10.1103/PhysRevLett.102.166803},
file = {:home/maxhutch/Documents/Mendeley Desktop/Pardo, Pickett - 2009 - Half-Metallic Semi-Dirac-Point Generated by Quantum Confinement in TiO2VO2 Nanostructures.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {apr},
number = {16},
pages = {2--5},
title = {{Half-Metallic Semi-Dirac-Point Generated by Quantum Confinement in TiO2/VO2 Nanostructures}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.102.166803},
volume = {102},
year = {2009}
}
@article{Sharma2005,
author = {<NAME> <NAME> <NAME>.},
doi = {10.1103/PhysRevLett.95.136402},
file = {:home/maxhutch/Documents/Mendeley Desktop/Sharma, Dewhurst, Ambrosch-Draxl - 2005 - All-Electron Exact Exchange Treatment of Semiconductors Effect of Core-Valence Interaction on.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {sep},
number = {13},
pages = {136402},
title = {{All-Electron Exact Exchange Treatment of Semiconductors: Effect of Core-Valence Interaction on Band-Gap and d-Band Position}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.95.136402},
volume = {95},
year = {2005}
}
@article{Marzari1999,
author = {<NAME> <NAME> Payne, MC},
doi = {10.1103/PhysRevLett.82.3296},
file = {:home/maxhutch/Documents/Mendeley Desktop/Marzari et al. - 1999 - Thermal contraction and disordering of the Al (110) surface.pdf:pdf},
issn = {0031-9007},
journal = {Physical review letters},
month = {apr},
number = {16},
pages = {3296--3299},
title = {{Thermal contraction and disordering of the Al (110) surface}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.82.3296 http://prl.aps.org/abstract/PRL/v82/i16/p3296{\_}1},
volume = {82},
year = {1999}
}
@article{Davidson1975,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Davidson - 1975 - The iterative calculation of a few of the lowest eigenvalues and corresponding eigenvectors of large real-symmetric ma.pdf:pdf},
journal = {Journal of Computational Physics},
pages = {87--94},
title = {{The iterative calculation of a few of the lowest eigenvalues and corresponding eigenvectors of large real-symmetric matrices}},
url = {http://www.sciencedirect.com/science/article/pii/0021999175900650/pdf?md5=e3fb5e9fa24e9e30a002e8e8e938ef8b{\&}pid=1-s2.0-0021999175900650-main.pdf{\&}{\_}valck=1},
year = {1975}
}
@misc{TheMendeleySupportTeam2011b,
abstract = {A quick introduction to Mendeley. Learn how Mendeley creates your personal digital library, how to organize and annotate documents, how to collaborate and share with colleagues, and how to generate citations and bibliographies.},
address = {London},
author = {{The Mendeley Support Team}},
booktitle = {Mendeley Desktop},
file = {:home/maxhutch/Documents/Mendeley Desktop//The Mendeley Support Team - 2011 - Getting Started with Mendeley(2).pdf:pdf},
keywords = {Mendeley,how-to,user manual},
pages = {1--16},
publisher = {Mendeley Ltd.},
title = {{Getting Started with Mendeley}},
url = {http://www.mendeley.com},
year = {2011}
}
@article{Hacene2012,
abstract = {We present a way to improve the performance of the electronic structure Vienna Ab initio Simulation Package (VASP) program. We show that high-performance computers equipped with graphics processing units (GPUs) as accelerators may reduce drastically the computation time when offloading these sections to the graphic chips. The procedure consists of (i) profiling the performance of the code to isolate the time-consuming parts, (ii) rewriting these so that the algorithms become better-suited for the chosen graphic accelerator, and (iii) optimizing memory traffic between the host computer and the GPU accelerator. We chose to accelerate VASP with NVIDIA GPU using CUDA. We compare the GPU and original versions of VASP by evaluating the Davidson and RMM-DIIS algorithms on chemical systems of up to 1100 atoms. In these tests, the total time is reduced by a factor between 3 and 8 when running on n (CPU core + GPU) compared to n CPU cores only, without any accuracy loss. {\textcopyright} 2012 Wiley Periodicals, Inc.},
author = {<NAME> <NAME> <NAME> <NAME>},
doi = {10.1002/jcc.23096},
file = {:home/maxhutch/Documents/Mendeley Desktop/Hacene et al. - 2012 - Accelerating VASP electronic structure calculations using graphic processing units(2).pdf:pdf},
issn = {1096-987X},
journal = {Journal of computational chemistry},
month = {aug},
pages = {1--9},
pmid = {22903247},
title = {{Accelerating VASP electronic structure calculations using graphic processing units.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/22903247},
year = {2012}
}
@article{Vetere2000,
author = {<NAME> <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Vetere, Adamo, Maldivi - 2000 - Performance of the ` parameter free' PBE0 functional for the modeling of molecular properties of heavy.pdf,:pdf,},
issn = {0009-2614},
journal = {Chemical physics letters},
number = {1-3},
pages = {99--105},
publisher = {Elsevier},
title = {{Performance of the ` parameter free' PBE0 functional for the modeling of molecular properties of heavy metals}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0009261400006576},
volume = {325},
year = {2000}
}
@misc{TheMendeleySupportTeam2011,
abstract = {A quick introduction to Mendeley. Learn how Mendeley creates your personal digital library, how to organize and annotate documents, how to collaborate and share with colleagues, and how to generate citations and bibliographies.},
address = {London},
author = {{The Mendeley Support Team}},
booktitle = {Mendeley Desktop},
file = {:home/maxhutch/Documents/Mendeley Desktop//The Mendeley Support Team - 2011 - Getting Started with Mendeley(2).pdf:pdf},
keywords = {Mendeley,how-to,user manual},
pages = {1--16},
publisher = {Mendeley Ltd.},
title = {{Getting Started with Mendeley}},
url = {http://www.mendeley.com},
year = {2011}
}
@article{Flores-Livas2012,
author = {Flores-Livas, <NAME> Amsler, <NAME> Lenosky, <NAME>, <NAME> <NAME>},
doi = {10.1103/PhysRevLett.108.117004},
file = {:home/maxhutch/Documents/Mendeley Desktop/Flores-Livas et al. - 2012 - High-Pressure Structures of Disilane and Their Superconducting Properties.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {mar},
number = {11},
pages = {1--5},
title = {{High-Pressure Structures of Disilane and Their Superconducting Properties}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.108.117004},
volume = {108},
year = {2012}
}
@article{Fleck1971,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Fleck, Cummings - 1971 - An implicit Monte Carlo scheme for calculating time and frequency dependent nonlinear radiation transport.pdf:pdf},
journal = {Journal of Computational Physics},
pages = {313--342},
title = {{An implicit Monte Carlo scheme for calculating time and frequency dependent nonlinear radiation transport}},
url = {http://www.sciencedirect.com/science/article/pii/0021999171900155},
volume = {342},
year = {1971}
}
@article{Eloranta1992,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Eloranta - 1992 - The kink of cellular automaton rule 18 performs a random walk.pdf:pdf},
journal = {Journal of Statistical Physics},
keywords = {cellular automaton,kink,random walk},
title = {{The kink of cellular automaton rule 18 performs a random walk}},
url = {http://www.springerlink.com/index/v48v5x3487v86546.pdf},
volume = {69},
year = {1992}
}
@article{Plessix2006,
author = {<NAME>.},
doi = {10.1111/j.1365-246X.2006.02978.x},
file = {:home/maxhutch/Documents/Mendeley Desktop/Plessix - 2006 - A review of the adjoint-state method for computing the gradient of a functional with geophysical applications.pdf:pdf},
issn = {0956540X},
journal = {Geophysical Journal International},
keywords = {1 i n t,adjoint state,consists of deter-,gradient,migration,mining model parameters from,observed data,one of the important,ro d u c,t i o n,tasks in data processing,these tasks can,tomography},
number = {2},
pages = {495--503},
title = {{A review of the adjoint-state method for computing the gradient of a functional with geophysical applications}},
url = {http://gji.oxfordjournals.org/cgi/doi/10.1111/j.1365-246X.2006.02978.x},
volume = {167},
year = {2006}
}
@article{Pinelli2010,
author = {<NAME> <NAME> Sekimoto, <NAME> <NAME>},
doi = {10.1017/S0022112010001849},
file = {:home/maxhutch/Documents/Mendeley Desktop/Pinelli et al. - 2010 - Reynolds number dependence of mean flow structure in square duct turbulence.pdf:pdf},
issn = {0022-1120},
journal = {Journal of Fluid Mechanics},
pages = {537},
title = {{Reynolds number dependence of mean flow structure in square duct turbulence}},
volume = {653},
year = {2010}
}
@book{Vladimirov,
author = {<NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Vladimirov, Karpusenko - Unknown - Parallel programming and optimization with intel xeon phi coprocessors.pdf:pdf},
isbn = {9780988523418},
title = {{Parallel programming and optimization with intel xeon phi coprocessors}}
}
@article{Schilling1990,
author = {<NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/Schilling - 1990 - The longest run of heads.pdf:pdf},
journal = {College Mathematics Journal},
number = {3},
pages = {196--207},
title = {{The longest run of heads}},
url = {http://users.eecs.northwestern.edu/{~}nickle/310/2010/headRuns.pdf},
volume = {21},
year = {1990}
}
@misc{Hutchinsonb,
author = {<NAME>},
doi = {10.5281/zenodo.35258},
title = {{NekBox v2.0.0}}
}
@article{El-Ayat1985,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/El-Ayat - 1985 - The Intel 80386-Architecture and Implementation.pdf:pdf},
journal = {Micro, IEEE},
title = {{The Intel 80386-Architecture and Implementation}},
url = {http://ieeexplore.ieee.org/xpls/abs{\_}all.jsp?arnumber=4089530},
year = {1985}
}
@book{Mathews1970,
author = {<NAME>. and <NAME>.},
booktitle = {Materials and Manufacturing Processes},
file = {:home/maxhutch/Documents/Mendeley Desktop/Mathews, Walker - 1970 - Mathematical methods of physics.pdf:pdf},
isbn = {978-0805370027},
publisher = {<NAME>},
title = {{Mathematical methods of physics}},
url = {http://adsabs.harvard.edu/abs/1970mmp..book.....M},
volume = {1},
year = {1970}
}
@article{Mueller2013,
abstract = {The demand for substantial increases in the spatial resolution of global weather- and climate- prediction models makes it necessary to use numerically efficient and highly scalable algorithms to solve the equations of large scale atmospheric fluid dynamics. For stability and efficiency reasons several of the operational forecasting centres, in particular the Met Office and the ECMWF in the UK, use semi-implicit semi-Lagrangian time stepping in the dynamical core of the model. The additional burden with this approach is that a three dimensional elliptic partial differential equation (PDE) for the pressure correction has to be solved at every model time step and this often constitutes a significant proportion of the time spent in the dynamical core. To run within tight operational time scales the solver has to be parallelised and there seems to be a (perceived) misconception that elliptic solvers do not scale to large processor counts and hence implicit time stepping can not be used in very high resolution global models. After reviewing several methods for solving the elliptic PDE for the pressure correction and their application in atmospheric models we demonstrate the performance and very good scalability of Krylov subspace solvers and multigrid algorithms for a representative model equation with more than {\$}10{\^{}}{\{}10{\}}{\$} unknowns on 65536 cores on HECToR, the UK's national supercomputer. For this we tested and optimised solvers from two existing numerical libraries (DUNE and hypre) and implemented both a Conjugate Gradient solver and a geometric multigrid algorithm based on a tensor-product approach which exploits the strong vertical anisotropy of the discretised equation. We study both weak and strong scalability and compare the absolute solution times for all methods; in contrast to one-level methods the multigrid solver is robust with respect to parameter variations.},
archivePrefix = {arXiv},
arxivId = {1307.2036},
author = {<NAME> and <NAME>},
eprint = {1307.2036},
file = {:home/maxhutch/Documents/Mendeley Desktop/Mueller, Scheichl - 2013 - Massively parallel solvers for elliptic PDEs in numerical weather-and climate prediction.pdf:pdf},
journal = {arXiv preprint arXiv:1307.2036},
month = {jul},
number = {2},
pages = {24},
title = {{Massively parallel solvers for elliptic PDEs in numerical weather-and climate prediction}},
url = {http://arxiv.org/abs/1307.2036},
year = {2013}
}
@article{Pusey2011,
archivePrefix = {arXiv},
arxivId = {arXiv:1111.3328v1},
author = {<NAME>. and <NAME> and <NAME>},
eprint = {arXiv:1111.3328v1},
file = {:home/maxhutch/Documents/Mendeley Desktop/Pusey, <NAME> - 2011 - The quantum state cannot be interpreted statistically.pdf:pdf},
journal = {Arxiv preprint arXiv:1111.3328},
pages = {1--7},
title = {{The quantum state cannot be interpreted statistically}},
url = {http://arxiv.org/abs/1111.3328},
year = {2011}
}
@article{Chandrasekhar1953,
author = {<NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Chandrasekhar, Fermi - 1953 - Problems of gravitational stability in the presence of a magnetic field.pdf:pdf},
journal = {Astrophysical Journal},
title = {{Problems of gravitational stability in the presence of a magnetic field}},
url = {http://repository.ias.ac.in/76768/},
year = {1953}
}
@article{Bialecki2005,
author = {Bialecki, <NAME>, Owen},
journal = {Wiki at http://lucene. apache. org/hadoop},
title = {{Hadoop: a framework for running applications on large clusters built of commodity hardware}},
volume = {11},
year = {2005}
}
@article{Kresse1996a,
author = {<NAME> Furthm{\"{<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Kresse, Furthm{\"{u}}ller - 1996 - Efficient iterative schemes for ab initio total-energy calculations using a plane-wave basis set.pdf:pdf},
issn = {0163-1829},
journal = {Physical review. B, Condensed matter},
month = {oct},
number = {16},
pages = {11169--11186},
pmid = {9984901},
title = {{Efficient iterative schemes for ab initio total-energy calculations using a plane-wave basis set.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/9984901},
volume = {54},
year = {1996}
}
@article{Hamalainen2002,
author = {H{\"{a}}m{\"{a}}l{\"{a}}<NAME>.},
doi = {10.1103/PhysRevB.65.155111},
file = {:home/maxhutch/Documents/Mendeley Desktop/H{\"{a}}m{\"{a}}l{\"{a}}inen et al. - 2002 - Momentum dependence of fluorine K-edge core exciton in LiF.pdf:pdf},
issn = {0163-1829},
journal = {Physical Review B},
month = {mar},
number = {15},
pages = {155111},
title = {{Momentum dependence of fluorine K-edge core exciton in LiF}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.65.155111},
volume = {65},
year = {2002}
}
@article{Hod2007,
archivePrefix = {arXiv},
arxivId = {arXiv:0704.2043v1},
author = {<NAME> <NAME>},
eprint = {arXiv:0704.2043v1},
file = {:home/maxhutch/Documents/Mendeley Desktop/Hod et al. - 2007 - Enhanced half-metallicity in edge-oxidized zigzag graphene nanoribbons.pdf:pdf},
journal = {arXiv preprint arXiv: {\ldots}},
title = {{Enhanced half-metallicity in edge-oxidized zigzag graphene nanoribbons}},
url = {http://arxiv.org/abs/0704.2043},
volume = {1892},
year = {2007}
}
@article{Widom2008,
author = {<NAME> and Mihalkovi{\v{c}}, M.},
doi = {10.1103/PhysRevB.77.064113},
file = {:home/maxhutch/Documents/Mendeley Desktop/Widom, Mihalkovi{\v{c}} - 2008 - Symmetry-broken crystal structure of elemental boron at low temperature.pdf:pdf},
issn = {1098-0121},
journal = {Physical Review B},
month = {feb},
number = {6},
title = {{Symmetry-broken crystal structure of elemental boron at low temperature}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.77.064113},
volume = {77},
year = {2008}
}
@book{MelissinosA.C.Napolitano,
author = {{<NAME>}, J},
title = {{Experiments in Modern Physics}}
}
@article{Rohlfing2000,
author = {<NAME> <NAME>},
doi = {10.1103/PhysRevB.62.4927},
file = {:home/maxhutch/Documents/Mendeley Desktop/Rohlfing, Louie - 2000 - Electron-hole excitations and optical spectra from first principles.pdf:pdf},
issn = {0163-1829},
journal = {Physical Review B},
month = {aug},
number = {8},
pages = {4927--4944},
title = {{Electron-hole excitations and optical spectra from first principles}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.62.4927},
volume = {62},
year = {2000}
}
@article{Gibson2000,
author = {<NAME>. and <NAME>},
doi = {10.1021/jp993732q},
file = {:home/maxhutch/Documents/Mendeley Desktop/Gibson, Bruck - 2000 - Efficient exact stochastic simulation of chemical systems with many species and many channels.pdf:pdf},
issn = {1089-5639},
journal = {The journal of physical chemistry A},
month = {mar},
number = {9},
pages = {1876--1889},
publisher = {ACS Publications},
title = {{Efficient exact stochastic simulation of chemical systems with many species and many channels}},
url = {http://pubs.acs.org/doi/abs/10.1021/jp993732q},
volume = {104},
year = {2000}
}
@misc{TheMendeleySupportTeam2011,
abstract = {A quick introduction to Mendeley. Learn how Mendeley creates your personal digital library, how to organize and annotate documents, how to collaborate and share with colleagues, and how to generate citations and bibliographies.},
address = {London},
author = {{The Mendeley Support Team}},
booktitle = {Mendeley Desktop},
file = {:home/maxhutch/Documents/Mendeley Desktop//The Mendeley Support Team - 2011 - Getting Started with Mendeley(2).pdf:pdf},
keywords = {Mendeley,how-to,user manual},
pages = {1--16},
publisher = {Mendeley Ltd.},
title = {{Getting Started with Mendeley}},
url = {http://www.mendeley.com},
year = {2011}
}
@article{Persson2007,
author = {<NAME> and <NAME>},
doi = {10.1016/j.cpc.2007.02.111},
file = {:home/maxhutch/Documents/Mendeley Desktop/{\_}Persson{\_}Ambrosch-Draxl{\_}2007{\_}CPC{\_}A full-band FPLAPW + k.p method for solving Kohn-Sham equation.pdf:pdf},
issn = {00104655},
journal = {Computer Physics Communications},
keywords = {electronic band structure,full-potential lapw,k,k dot p,kohn,optical properties,p,sham equation},
mendeley-tags = {k dot p},
month = {aug},
number = {3},
pages = {280--287},
title = {{A full-band -method for solving the Kohn–Sham equation}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0010465507001841},
volume = {177},
year = {2007}
}
@article{Cohn2000,
author = {Cohn, <NAME> Elkies, <NAME> Propp, James},
file = {:home/maxhutch/Documents/Mendeley Desktop/Cohn, Elkies, Propp - 1996 - Local statistics for random domino tilings of the Aztec diamond.pdf:pdf},
journal = {Duke Mathematical Journal},
pages = {117----166},
title = {{Local statistics for random domino tilings of the Aztec diamond}},
volume = {85},
year = {1996}
}
@article{Wood1985,
author = {<NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Wood, Zunger - 1985 - A new method for diagonalising large matrices.pdf:pdf},
journal = {Journal of Physics A: Mathematical and {\ldots}},
number = {0305},
pages = {1343--1359},
title = {{A new method for diagonalising large matrices}},
url = {http://iopscience.iop.org/0305-4470/18/9/018},
volume = {18},
year = {1985}
}
@article{Kadanoff1986,
author = {Kadanoff, <NAME>.},
doi = {10.1063/1.2815134},
file = {:home/maxhutch/Documents/Mendeley Desktop/Kadanoff - 1986 - On Two Levels.pdf:pdf},
issn = {00319228},
journal = {Physics Today},
number = {9},
pages = {7},
title = {{On Two Levels}},
url = {http://link.aip.org/link/PHTOAD/v39/i9/p7/s1{\&}Agg=doi},
volume = {39},
year = {1986}
}
@article{Lee2008,
author = {<NAME> <NAME> <NAME> <NAME>},
doi = {10.1103/PhysRevB.77.134105},
file = {:home/maxhutch/Documents/Mendeley Desktop/Lee et al. - 2008 - Elastic constants and volume changes associated with two high-pressure rhombohedral phase transformations in vanadiu.pdf:pdf},
issn = {1098-0121},
journal = {Physical Review B},
month = {apr},
number = {13},
pages = {1--6},
title = {{Elastic constants and volume changes associated with two high-pressure rhombohedral phase transformations in vanadium}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.77.134105},
volume = {77},
year = {2008}
}
@article{Gershenson2010,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Gershenson - 2010 - Model Checking Omega Cellular Automata.pdf:pdf},
journal = {reports-archive.adm.cs.cmu.edu},
number = {May},
title = {{Model Checking Omega Cellular Automata}},
url = {http://reports-archive.adm.cs.cmu.edu/anon/anon/2010/abstracts/10-123.html},
year = {2010}
}
@article{Kolmogorov1941,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Kolmogorov - 1941 - The local structure of turbulence in incompressible viscous fluid for very large Reynolds numbers.pdf:pdf},
journal = {Dokl. Akad. Nauk SSSR},
number = {December 1940},
pages = {9--13},
title = {{The local structure of turbulence in incompressible viscous fluid for very large Reynolds numbers}},
url = {http://homepages.see.leeds.ac.uk/{~}eeaol/p/kolmogorov41.pdf},
volume = {30},
year = {1941}
}
@article{Hybertsen1986,
author = {Hybertsen, <NAME>. and Louie, <NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/Hybertsen - 1986 - Electron correlation in semiconductors and insulators Band gaps and quasiparticle energies.pdf:pdf},
journal = {Physical Review B},
number = {8},
title = {{Electron correlation in semiconductors and insulators: Band gaps and quasiparticle energies}},
url = {http://prb.aps.org/abstract/PRB/v34/i8/p5390{\_}1},
volume = {34},
year = {1986}
}
@article{Myers1988,
abstract = {Space, not time, is often the limiting factor when computing optimal sequence alignments, and a number of recent papers in the biology literature have proposed space-saving strategies. However, a 1975 computer science paper by Hirschberg presented a method that is superior to the new proposals, both in theory and in practice. The goal of this paper is to give Hirschberg's idea the visibility it deserves by developing a linear-space version of Gotoh's algorithm, which accommodates affine gap penalties. A portable C-software package implementing this algorithm is available on the BIONET free of charge.},
author = {Myers, <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Myers, Miller - 1988 - Optimal alignments in linear space.pdf:pdf},
issn = {0266-7061},
journal = {Computer applications in the biosciences : CABIOS},
keywords = {Algorithms,Base Sequence,Biological Evolution,Sequence Homology, Nucleic Acid,Software},
month = {mar},
number = {1},
pages = {11--7},
pmid = {3382986},
title = {{Optimal alignments in linear space.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/3382986},
volume = {4},
year = {1988}
}
@article{Mueller1993,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Mueller - 1993 - A library implementation of POSIX threads under UNIX.pdf:pdf},
journal = {Proceedings of the USENIX Conference},
title = {{A library implementation of POSIX threads under UNIX}},
url = {http://moss.csc.ncsu.edu/{~}mueller/ftp/pub/PART/pthreads{\_}usenix93.pdf},
year = {1993}
}
@incollection{Henley1991,
author = {<NAME>},
booktitle = {Quasicrystals: The State of the Art},
pages = {429--524},
publisher = {World Scientific},
title = {{Random tiling models}},
year = {1991}
}
@article{Mosca1998,
archivePrefix = {arXiv},
arxivId = {arXiv:quant-ph/9903071v1},
author = {<NAME> and <NAME>},
eprint = {9903071v1},
file = {:home/maxhutch/Documents/Mendeley Desktop/Mosca, Ekert - 1999 - The hidden subgroup problem and eigenvalue estimation on a quantum computer.pdf:pdf},
journal = {Quantum Computing and Quantum Communications},
number = {May},
pages = {24--29},
primaryClass = {arXiv:quant-ph},
title = {{The hidden subgroup problem and eigenvalue estimation on a quantum computer}},
url = {http://www.springerlink.com/index/9kf01c4wc40600m3.pdf},
year = {1999}
}
@article{Agapito2013,
author = {<NAME>. and <NAME> and <NAME> and <NAME> and {<NAME>}, Marco},
doi = {10.1103/PhysRevB.88.165127},
file = {:home/maxhutch/Documents/Mendeley Desktop/Agapito et al. - 2013 - Effective and accurate representation of extended Bloch states on finite Hilbert spaces.pdf:pdf},
issn = {1098-0121},
journal = {Physical Review B},
month = {oct},
number = {16},
pages = {165127},
title = {{Effective and accurate representation of extended Bloch states on finite Hilbert spaces}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.88.165127},
volume = {88},
year = {2013}
}
@article{Stonebraker2011a,
author = {Stonebraker, Michael},
doi = {10.1145/1941487},
file = {:home/maxhutch/Documents/Mendeley Desktop/Stonebraker - 2011 - Stonebraker on data warehouses.pdf:pdf},
journal = {Communications of the ACM},
number = {5},
pages = {4--5},
title = {{Stonebraker on data warehouses}},
url = {http://dl.acm.org/citation.cfm?id=1941491},
year = {2011}
}
@incollection{Hutchinsona,
author = {<NAME> <NAME>, <NAME>, <NAME>},
booktitle = {Electronic Structure Calculations on Graphics Processing Units},
title = {{Plane wave density functional theory}}
}
@article{Sutner1991,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Sutner - 1991 - De Bruijn graphs and linear cellular automata.pdf:pdf},
journal = {Complex Systems},
number = {1},
pages = {19--30},
title = {{De Bruijn graphs and linear cellular automata}},
url = {http://www.complex-systems.com/pdf/05-1-3.pdf},
volume = {5},
year = {1991}
}
@book{MacMahon,
author = {<NAME>},
publisher = {Cambridge University Press},
title = {{Combinatorial Analysis}},
year = {1915}
}
@article{Sharma2011,
author = {<NAME> <NAME>, <NAME> <NAME> <NAME>. and <NAME>.},
doi = {10.1007/s10948-011-1146-0},
file = {:home/maxhutch/Documents/Mendeley Desktop/Sharma et al. - 2011 - Comparative Experimental and Density Functional Theory (DFT) Study of the Physical Properties of MgB2 and AlB2.pdf:pdf},
isbn = {1094801111460},
issn = {1557-1939},
journal = {Journal of Superconductivity and Novel Magnetism},
keywords = {alb 2,capacity and density functional,crystal structure,electrical,heat,magnetization,mgb 2,resistivity,theory,thermoelectric-power},
month = {mar},
number = {6},
pages = {1925--1931},
title = {{Comparative Experimental and Density Functional Theory (DFT) Study of the Physical Properties of MgB2 and AlB2}},
url = {http://www.springerlink.com/index/10.1007/s10948-011-1146-0},
volume = {24},
year = {2011}
}
@article{Blochl1990,
author = {Bl{\"{<NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/Bl{\"{o}}chl - 1990 - Generalized separable potentials for electronic-structure calculations.pdf:pdf},
journal = {Physical Review B},
number = {8},
pages = {5414--5416},
title = {{Generalized separable potentials for electronic-structure calculations}},
url = {http://prb.aps.org/abstract/PRB/v41/i8/p5414{\_}1},
volume = {41},
year = {1990}
}
@article{Rousseau2010,
author = {<NAME> and <NAME>},
doi = {10.1088/1742-6596/215/1/012109},
file = {:home/maxhutch/Documents/Mendeley Desktop/Rousseau, Bergara - 2010 - Ab initio superconducting temperature of BaSi 2 at ambient pressure.pdf:pdf},
issn = {1742-6596},
journal = {Journal of Physics: Conference Series},
month = {mar},
pages = {012109},
title = {{Ab initio superconducting temperature of BaSi 2 at ambient pressure}},
url = {http://stacks.iop.org/1742-6596/215/i=1/a=012109?key=crossref.5d8d30db9a301f99a10e96ad9ad6a503},
volume = {215},
year = {2010}
}
@article{Elnitsky1997,
author = {<NAME>},
doi = {10.1006/jcta.1997.2723},
file = {:home/maxhutch/Documents/Mendeley Desktop/Elnitsky - 1997 - Rhombic tilings of polygons and classes of reduced words in Coxeter groups.pdf:pdf},
issn = {00973165},
journal = {Journal of Combinatorial Theory, Series A},
month = {feb},
number = {2},
pages = {193--221},
title = {{Rhombic tilings of polygons and classes of reduced words in Coxeter groups}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0097316597927230 http://www.sciencedirect.com/science/article/pii/S0097316597927230},
volume = {77},
year = {1997}
}
@article{Morningstar2007,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Morningstar - 2007 - The Monte Carlo method in quantum field theory.pdf:pdf},
journal = {Arxiv preprint hep-lat/0702020},
keywords = {lattice qcd,markov chains,monte carlo},
pages = {1--77},
title = {{The Monte Carlo method in quantum field theory}},
url = {http://arxiv.org/abs/hep-lat/0702020},
year = {2007}
}
@article{Lenaers2014,
author = {<NAME> Schlatter, <NAME>, <NAME>.},
doi = {10.1016/j.jcp.2014.04.034},
file = {:home/maxhutch/Documents/Mendeley Desktop/Lenaers et al. - 2014 - A new high-order method for the simulation of incompressible wall-bounded turbulent flows.pdf:pdf},
issn = {00219991},
journal = {Journal of Computational Physics},
keywords = {incompressible wall-bounded turbulent},
month = {sep},
pages = {108--126},
publisher = {Elsevier Inc.},
title = {{A new high-order method for the simulation of incompressible wall-bounded turbulent flows}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0021999114002976},
volume = {272},
year = {2014}
}
@article{Setyawan2010,
author = {<NAME> <NAME>},
doi = {10.1016/j.commatsci.2010.05.010},
file = {:home/maxhutch/Documents/Mendeley Desktop//Setyawan, Curtarolo - 2010 - High-throughput electronic band structure calculations Challenges and tools(2).pdf:pdf;:home/maxhutch/Documents/Mendeley Desktop//Setyawan, Curtarolo - 2010 - High-throughput electronic band structure calculations Challenges and tools.pdf:pdf},
issn = {09270256},
journal = {Computational Materials Science},
month = {aug},
number = {2},
pages = {299--312},
title = {{High-throughput electronic band structure calculations: Challenges and tools}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0927025610002697},
volume = {49},
year = {2010}
}
@article{Sutner1995,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Sutner - 1995 - On the computational complexity of finite cellular automata.pdf:pdf},
journal = {Journal of Computer and System Sciences},
title = {{On the computational complexity of finite cellular automata}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0022000085710094},
year = {1995}
}
@article{Ahlers2009,
author = {<NAME> and <NAME>},
doi = {10.1103/RevModPhys.81.503},
file = {:home/maxhutch/Documents/Mendeley Desktop/Ahlers, Lohse - 2009 - Heat transfer and large scale dynamics in turbulent Rayleigh-B{\'{e}}nard convection.pdf:pdf},
issn = {0034-6861},
journal = {Reviews of Modern Physics},
month = {apr},
number = {2},
pages = {503--537},
title = {{Heat transfer and large scale dynamics in turbulent Rayleigh-B{\'{e}}nard convection}},
url = {http://link.aps.org/doi/10.1103/RevModPhys.81.503},
volume = {81},
year = {2009}
}
@article{Patterson1985,
author = {<NAME>.},
doi = {10.1145/2465.214917},
file = {:home/maxhutch/Documents/Mendeley Desktop/Patterson - 1985 - Reduced instruction set computers.pdf:pdf},
issn = {00010782},
journal = {Communications of the ACM},
month = {jan},
number = {1},
pages = {8--21},
title = {{Reduced instruction set computers}},
url = {http://portal.acm.org/citation.cfm?doid=2465.214917},
volume = {28},
year = {1985}
}
@article{Ramaprabhu2004,
author = {<NAME> <NAME>.},
doi = {10.1063/1.1765171},
file = {:home/maxhutch/Documents/Mendeley Desktop//Ramaprabhu, Andrews - 2004 - On the initialization of Rayleigh–Taylor simulations.pdf:pdf},
issn = {10706631},
journal = {Physics of Fluids},
number = {8},
pages = {L59},
title = {{On the initialization of Rayleigh–Taylor simulations}},
url = {http://link.aip.org/link/PHFLE6/v16/i8/pL59/s1{\&}Agg=doi},
volume = {16},
year = {2004}
}
@article{Widom1993,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Widom - 1993 - Bethe Ansatz solution of the square-triangle random tiling model.pdf:pdf},
journal = {Physical review letters},
number = {14},
title = {{Bethe Ansatz solution of the square-triangle random tiling model}},
volume = {70},
year = {1993}
}
@article{Aaronson2002,
archivePrefix = {arXiv},
arxivId = {arXiv:quant-ph/0206089v2},
author = {<NAME>.},
eprint = {0206089v2},
file = {:home/maxhutch/Documents/Mendeley Desktop/Aaronson - 2002 - Book Review'A New Kind of Science'.pdf:pdf},
journal = {Arxiv preprint quant-ph/0206089},
number = {0},
pages = {95--108},
primaryClass = {arXiv:quant-ph},
title = {{Book Review:'A New Kind of Science'}},
url = {http://arxiv.org/abs/quant-ph/0206089},
volume = {1},
year = {2002}
}
@article{Destainville2005,
author = {<NAME> <NAME> <NAME> <NAME>.},
doi = {10.1007/s10955-005-6989-y},
file = {:home/maxhutch/Documents/Mendeley Desktop/Destainville et al. - 2005 - Random Tilings of High Symmetry I. Mean-Field Theory.pdf:pdf},
issn = {0022-4715},
journal = {Journal of Statistical Physics},
keywords = {entropy,mean field theory,quasicrystal,random tiling},
month = {sep},
number = {5-6},
pages = {799--835},
title = {{Random Tilings of High Symmetry: I. Mean-Field Theory}},
url = {http://www.springerlink.com/index/10.1007/s10955-005-6989-y},
volume = {120},
year = {2005}
}
@article{Pickett1989,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/1-s2.0-0167797789900026-main.pdf:pdf},
journal = {Computer Physics Reports},
title = {{Pseudopotential methods in condensed matter applications}},
url = {http://www.sciencedirect.com/science/article/pii/0167797789900026},
year = {1989}
}
@article{Kong2000,
author = {<NAME>, CA and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Kong, White, Krylov - 2000 - Q-Chem 2.0 a high-performance ab initio electronic structure program package.pdf:pdf},
journal = {Journal of {\ldots}},
keywords = {computational chemistry,computer program,density functional theory,electronic structure,quantum chemistry},
number = {16},
pages = {1532--1548},
title = {{Q-Chem 2.0: a high-performance ab initio electronic structure program package}},
url = {http://onlinelibrary.wiley.com/doi/10.1002/1096-987X(200012)21:16{\textless}1532::AID-JCC10{\textgreater}3.0.CO;2-W/full},
volume = {21},
year = {2000}
}
@article{GaroffS.2011,
abstract = {While unirradiated potassium tartrate (PT) samples do not exhibit any electron spin resonance signal, irradiated ones contain many resonance signals. A power function of the radiation dose was found to describe well the dose-response curve of the central resonance signal, and adjusting the microwave power and modulation amplitude to be 2 mW and 1 mT, respectively, was found to increase the sensitivity of PT. The radiation sensitivity of PT and the accuracy of the measured radiation dose were found to be G = 0.42 and 6 {\%}, respectively.},
author = {{<NAME>.}, Luokkala},
doi = {10.1093/rpd/ncr086},
file = {:home/maxhutch/Documents/Mendeley Desktop/Garoff, S. - 2011 - Electron Spin Resonance.pdf:pdf},
issn = {1742-3406},
journal = {Radiation protection dosimetry},
month = {apr},
pages = {1--14},
pmid = {21498863},
title = {{Electron Spin Resonance}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/21529014},
volume = {1},
year = {2011}
}
@article{Patera2007,
author = {<NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Patera, Rozza - 2007 - Reduced basis approximation and a posteriori error estimation for parametrized partial differential equations.pdf:pdf},
number = {January},
title = {{Reduced basis approximation and a posteriori error estimation for parametrized partial differential equations}},
url = {http://augustine.mit.edu/methodology/talks/AT{\_}Patera{\_}AFOSR{\_}JPR{\_}slides{\_}Aug08.pdf},
year = {2007}
}
@article{Stoneham2002,
abstract = {Computing comprises three distinct strands: hardware, software and the ways they are used in real or imagined worlds. Its use in research is more than writing or running code. Having something significant to compute and deploying judgement in what is attempted and achieved are especially challenging. In science or engineering, one must define a central problem in computable form, run such software as is appropriate and, last but by no means least, convince others that the results are both valid and useful. These several strands are highly interdependent. A major scientific development can transform disparate aspects of information and computer technologies. Computers affect the way we do science, as well as changing our personal worlds. Access to information is being transformed, with consequences beyond research or even science. Creativity in research is usually considered uniquely human, with inspiration a central factor. Scientific and technological needs are major forces in innovation, and these include hardware and software opportunities. One can try to define the scientific needs for established technologies (atomic energy, the early semiconductor industry), for rapidly developing technologies (advanced materials, microelectronics) and for emerging technologies (nanotechnology, novel information technologies). Did these needs define new computing, or was science diverted into applications of then-available codes? Regarding credibility, why is it that engineers accept computer realizations when designing engineered structures, whereas predictive modelling of materials has yet to achieve industrial confidence outside very special cases? The tensions between computing and traditional science are complex, unpredictable and potentially powerful.},
author = {Stoneham, a M},
doi = {10.1098/rsta.2002.0985},
file = {:home/maxhutch/Documents/Mendeley Desktop/Stoneham - 2002 - Computational physics a perspective.pdf:pdf},
issn = {1364-503X},
journal = {Philosophical transactions. Series A, Mathematical, physical, and engineering sciences},
keywords = {Computer Simulation,Information Storage and Retrieval,Information Storage and Retrieval: methods,Information Storage and Retrieval: trends,Materials Testing,Materials Testing: methods,Models, Chemical,Models, Molecular,Nanotechnology,Nanotechnology: methods,Nanotechnology: trends,Physics,Physics: methods,Physics: trends,Quality Control,Reproducibility of Results,Sensitivity and Specificity},
month = {jun},
number = {1795},
pages = {1107--21},
pmid = {12804268},
title = {{Computational physics: a perspective.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/21205658},
volume = {360},
year = {2002}
}
@article{Badam2011,
author = {<NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Badam, Pai - 2011 - SSDAlloc hybrid SSDRAM memory management made easy.pdf:pdf},
journal = {Proceedings of the 8th USENIX conference on {\ldots}},
title = {{SSDAlloc: hybrid SSD/RAM memory management made easy}},
url = {http://static.usenix.org/event/nsdi11/tech/full{\_}papers/Badam.pdf},
year = {2011}
}
@article{Nielsen1983,
author = {<NAME>. and Martin, <NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/Nielsen, Martin - 1983 - First-principles calculation of stress.pdf:pdf},
journal = {Physical Review Letters},
number = {9},
pages = {697--700},
title = {{First-principles calculation of stress}},
url = {http://prl.aps.org/abstract/PRL/v50/i9/p697{\_}1},
volume = {50},
year = {1983}
}
@article{Swendsen1987,
abstract = {A new approach to Monte Carlo simulations is presented, giving a highly efficient method of simulation for large systems near criticality. The algorithm violates dynamic universality at second-order phase transitions, producing unusually small values of the dynamical critical exponent.},
author = {<NAME> Wang, Jian-Sheng},
doi = {10.1103/PhysRevLett.58.86},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {jan},
number = {2},
pages = {86--88},
publisher = {American Physical Society},
shorttitle = {Phys. Rev. Lett.},
title = {{Nonuniversal critical dynamics in Monte Carlo simulations}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.58.86},
volume = {58},
year = {1987}
}
@article{Richtmyer1960,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Richtmyer - 1960 - Taylor instability in shock acceleration of compressible fluids.pdf:pdf},
journal = {Communications on Pure and Applied {\ldots}},
pages = {297--319},
title = {{Taylor instability in shock acceleration of compressible fluids}},
url = {http://onlinelibrary.wiley.com/doi/10.1002/cpa.3160130207/abstract},
volume = {XIII},
year = {1960}
}
@article{Galmiche2001,
author = {<NAME>. and <NAME> <NAME> <NAME>. and <NAME>.},
doi = {10.1117/12.425634},
editor = {<NAME> <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Galmiche et al. - 2001 - Numerical analysis of spherically convergent Rayleigh-Taylor experiments.pdf:pdf},
month = {apr},
pages = {363--366},
title = {{Numerical analysis of spherically convergent Rayleigh-Taylor experiments}},
url = {http://proceedings.spiedigitallibrary.org/proceeding.aspx?doi=10.1117/12.425634},
year = {2001}
}
@book{Anderson1999,
author = {<NAME> <NAME> and Bischof, Christian and Blackford, Susan and Demmel, James and Dongarra, Jack and {<NAME>}, Jeremy and Greenbaum, Anne and Hammerling, S and McKenney, Alan},
publisher = {Siam},
title = {{LAPACK Users' guide}},
year = {1999}
}
@article{Kumar2012,
author = {<NAME> and <NAME> and {<NAME>}, <NAME> <NAME>.},
doi = {10.1063/1.3679564},
file = {:home/maxhutch/Documents/Mendeley Desktop/Kumar et al. - 2012 - Superconductivity in the vicinity of ferromagnetism in oxygen free perovskite MgCNi3 An experimental and density f.pdf:pdf},
issn = {00218979},
journal = {Journal of Applied Physics},
number = {3},
pages = {033907},
title = {{Superconductivity in the vicinity of ferromagnetism in oxygen free perovskite MgCNi3: An experimental and density functional theory study}},
url = {http://link.aip.org/link/JAPIAU/v111/i3/p033907/s1{\&}Agg=doi},
volume = {111},
year = {2012}
}
@article{Kasteleyn1963,
author = {<NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/Kasteleyn - 1963 - Dimer Statistics and Phase Transitions.pdf:pdf},
issn = {00222488},
journal = {Journal of Mathematical Physics},
number = {2},
pages = {287},
title = {{Dimer Statistics and Phase Transitions}},
volume = {4},
year = {1963}
}
@article{Vinuesa2015,
author = {<NAME> Schlatter, <NAME> <NAME>.},
doi = {10.1080/14685248.2014.996716},
file = {:home/maxhutch/Documents/Mendeley Desktop/Vinuesa, Schlatter, Nagib - 2015 - On minimum aspect ratio for duct flow facilities and the role of side walls in generating secondary f.pdf:pdf},
issn = {1468-5248},
journal = {Journal of Turbulence},
keywords = {direct numerical simulation,hydraulics,motions,oil film interferometry,secondary,turbulent duct flow,wall turbulence,wall turbulence,turbulent duct flow,direct numeric},
number = {6},
pages = {588--606},
title = {{On minimum aspect ratio for duct flow facilities and the role of side walls in generating secondary flows}},
url = {http://www.tandfonline.com/doi/abs/10.1080/14685248.2014.996716},
volume = {16},
year = {2015}
}
@article{Lejeune1999,
abstract = {A two-dimensional cellular automaton model is introduced to deal with the dynamics of a finite system of particles whose interactions are simulated by two-body step potentials. The method is illustrated for a potential approximating the standard Lennard-Jones potential, representative for the problem of heavy ion collisions in nuclear physics. From the cellular automaton dynamics thermodynamic equilibrium state variables are introduced in the usual way. The numerical experiments indicate the occurrence of a phase transition. Macroscopically the transition is marked by a singularity in the equation of state; microscopically it manifests itself by the formation of clusters of particles of all sizes, obeying a mass distribution in the form of a power law of exponent 1.35.},
author = {<NAME> and <NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Lejeune, Perdang, Richert - 1999 - Application of cellular automata to N-body systems. - lejeune, perdang, richert - 1999: - lejeune, perdang, richert - 1999},
issn = {1063-651X},
journal = {Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics},
month = {sep},
number = {3},
pages = {2601--11},
pmid = {11970061},
title = {{Application of cellular automata to N-body systems.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/11970061},
volume = {60},
year = {1999}
}
@article{Shan1997,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Shan - 1997 - Simulation of Rayleigh-Benard convection using a lattice Boltzmann method.pdf:pdf},
journal = {Physical Review E},
number = {3},
pages = {2780--2788},
title = {{Simulation of Rayleigh-Benard convection using a lattice Boltzmann method}},
url = {http://pre.aps.org/abstract/PRE/v55/i3/p2780{\_}1},
volume = {55},
year = {1997}
}
@techreport{Li,
author = {<NAME> and <NAME>},
booktitle = {Tensor},
file = {:home/maxhutch/Documents/Mendeley Desktop/Li, Siegel - Unknown - An Empirically Tuned 2D and 3D FFT Library on CUDA GPU Categories and Subject Descriptors.pdf:pdf},
keywords = {2d fft,3d fft,empirical tuning,library generation},
pages = {305--314},
title = {{An Empirically Tuned 2D and 3D FFT Library on CUDA GPU Categories and Subject Descriptors}}
}
@article{Chiw2012,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Chiw et al. - 2012 - Diderot A Parallel DSL for Image Analysis and Visualization.pdf:pdf},
isbn = {9781450312059},
keywords = {domain specific languages,image analysis,parallelism,scien-,tific visualization},
title = {{Diderot: A Parallel DSL for Image Analysis and Visualization}},
url = {http://people.cs.uchicago.edu/{~}jhr/papers/2012/pldi-diderot.pdf},
year = {2012}
}
@article{Langmead2009,
abstract = {Bowtie is an ultrafast, memory-efficient alignment program for aligning short DNA sequence reads to large genomes. For the human genome, Burrows-Wheeler indexing allows Bowtie to align more than 25 million reads per CPU hour with a memory footprint of approximately 1.3 gigabytes. Bowtie extends previous Burrows-Wheeler techniques with a novel quality-aware backtracking algorithm that permits mismatches. Multiple processor cores can be used simultaneously to achieve even greater alignment speeds. Bowtie is open source (http://bowtie.cbcb.umd.edu).},
author = {Langmead, <NAME>, <NAME>},
doi = {10.1186/gb-2009-10-3-r25},
file = {:home/maxhutch/Documents/Mendeley Desktop/Langmead et al. - 2009 - Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.pdf:pdf},
issn = {1465-6914},
journal = {Genome biology},
keywords = {Algorithms,Base Sequence,Genome, Human,Genome, Human: genetics,Humans,Sequence Alignment,Sequence Alignment: methods},
month = {jan},
number = {3},
pages = {R25},
pmid = {19261174},
title = {{Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.}},
url = {http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2690996{\&}tool=pmcentrez{\&}rendertype=abstract},
volume = {10},
year = {2009}
}
@article{Aref1983,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Aref - 1983 - Integrable, chaotic, and turbulent vortex motion in two-dimensional flows.pdf:pdf},
journal = {Annual review of fluid mechanics},
title = {{Integrable, chaotic, and turbulent vortex motion in two-dimensional flows}},
url = {http://www.annualreviews.org/doi/pdf/10.1146/annurev.fl.15.010183.002021},
year = {1983}
}
@article{Li1992,
author = {<NAME> and <NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Li, Park, Widom - 1992 - Phase diagram of a random tiling quasicrystal.pdf:pdf},
issn = {0022-4715},
journal = {Journal of Statistical Physics},
keywords = {domain,hubbard,incommensurate phases,landau theory,multicritical points,phase diagram,quasicrystals,random tiling models,walls},
month = {jan},
number = {1-2},
pages = {1--69},
title = {{Phase diagram of a random tiling quasicrystal}},
volume = {66},
year = {1992}
}
@article{Slepoy2008,
abstract = {The time evolution of species concentrations in biochemical reaction networks is often modeled using the stochastic simulation algorithm (SSA) [Gillespie, J. Phys. Chem. 81, 2340 (1977)]. The computational cost of the original SSA scaled linearly with the number of reactions in the network. Gibson and Bruck developed a logarithmic scaling version of the SSA which uses a priority queue or binary tree for more efficient reaction selection [Gibson and Bruck, J. Phys. Chem. A 104, 1876 (2000)]. More generally, this problem is one of dynamic discrete random variate generation which finds many uses in kinetic Monte Carlo and discrete event simulation. We present here a constant-time algorithm, whose cost is independent of the number of reactions, enabled by a slightly more complex underlying data structure. While applicable to kinetic Monte Carlo simulations in general, we describe the algorithm in the context of biochemical simulations and demonstrate its competitive performance on small- and medium-size networks, as well as its superior constant-time performance on very large networks, which are becoming necessary to represent the increasing complexity of biochemical data for pathways that mediate cell function.},
author = {<NAME> <NAME>. and <NAME>.},
doi = {10.1063/1.2919546},
file = {:home/maxhutch/Documents/Mendeley Desktop/Slepoy, Thompson, Plimpton - 2008 - A constant-time kinetic Monte Carlo algorithm for simulation of large biochemical reaction networks.pdf:pdf},
issn = {1089-7690},
journal = {The Journal of chemical physics},
keywords = {Algorithms,Chemical,Kinetics,Metabolic Networks and Pathways,Models,Monte Carlo Method,Probability,Stochastic Processes,Time Factors},
month = {may},
number = {20},
pages = {205101},
pmid = {18513044},
title = {{A constant-time kinetic Monte Carlo algorithm for simulation of large biochemical reaction networks}},
url = {http://link.aip.org/link/?JCPSA6/128/205101/1},
volume = {128},
year = {2008}
}
@article{Nikolaenko2003,
author = {Nikolaenko, <NAME>, Guenter},
doi = {10.1103/PhysRevLett.91.084501},
file = {:home/maxhutch/Documents/Mendeley Desktop/Nikolaenko, Ahlers - 2003 - Nusselt Number Measurements for Turbulent Rayleigh-B{\'{e}}nard Convection.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {aug},
number = {8},
pages = {8--11},
title = {{Nusselt Number Measurements for Turbulent Rayleigh-B{\'{e}}nard Convection}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.91.084501},
volume = {91},
year = {2003}
}
@article{Carlberg2011,
author = {<NAME> <NAME> Amsallem, David},
file = {:home/maxhutch/Documents/Mendeley Desktop/Carlberg, Cortial, Amsallem - 2011 - The GNAT nonlinear model reduction method and its application to fluid dynamics problems(2).pdf:pdf},
journal = {{\ldots} Fluid Mechanics {\ldots}},
number = {650},
pages = {1--24},
title = {{The GNAT nonlinear model reduction method and its application to fluid dynamics problems}},
url = {http://arc.aiaa.org/doi/pdf/10.2514/6.2011-3112},
year = {2011}
}
@book{Griffiths2005,
author = {<NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/Griffiths - 2005 - Introduction to quantum mechanics.pdf:pdf},
title = {{Introduction to quantum mechanics}},
url = {http://www.mendeley.com/research/introduction-quantum-mechanics-1/},
year = {2005}
}
@article{Dimonte2004,
author = {<NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>.},
doi = {10.1063/1.1688328},
file = {:home/maxhutch/Documents/Mendeley Desktop//Dimonte et al. - 2004 - A comparative study of the turbulent Rayleigh–Taylor instability using high-resolution three-dimensional numer.pdf:pdf},
issn = {10706631},
journal = {Physics of Fluids},
number = {5},
pages = {1668},
title = {{A comparative study of the turbulent Rayleigh–Taylor instability using high-resolution three-dimensional numerical simulations: The Alpha-Group collaboration}},
url = {http://link.aip.org/link/PHFLE6/v16/i5/p1668/s1{\&}Agg=doi},
volume = {16},
year = {2004}
}
@article{Andrews1995,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Andrews - 1995 - Accurate computation of convective transport in transient two‐phase flow.pdf:pdf},
journal = {International journal for numerical methods in {\ldots}},
keywords = {convective transport,interface tracking,momentum,two-phase,van leer,volume fractions},
pages = {205--222},
title = {{Accurate computation of convective transport in transient two‐phase flow}},
url = {http://onlinelibrary.wiley.com/doi/10.1002/fld.1650210303/abstract},
volume = {2},
year = {1995}
}
@article{Ullrich1992,
author = {<NAME> <NAME> <NAME>},
doi = {10.1007/BF01244483},
file = {:home/maxhutch/Documents/Mendeley Desktop/Ullrich et al. - 1992 - Precise determination of the lattice constant of LiF by means of X-ray divergent beam (pseudo Kossel-) technique.pdf:pdf},
issn = {0026-3672},
journal = {Mikrochimica Acta},
keywords = {average,computer,determination of lattice constants,due to its low,graphics in x-ray microdiffraction,is very suitable for,lif,lithium fluoride,pseudo kossel lines,pseudo kossel technique in,technique,the x-ray divergent beam,transmission,transmission mode,x-ray divergent beam technique},
month = {may},
number = {3-6},
pages = {283--293},
title = {{Precise determination of the lattice constant of LiF by means of X-ray divergent beam (pseudo Kossel-) technique via computer graphics and multiple intersections}},
url = {http://www.springerlink.com/index/10.1007/BF01244483},
volume = {107},
year = {1992}
}
@article{Zheng2008,
author = {<NAME> and <NAME>},
doi = {10.1103/PhysRevB.78.045421},
file = {:home/maxhutch/Documents/Mendeley Desktop/Zheng, Duley - 2008 - First-principles study of edge chemical modifications in graphene nanodots.pdf:pdf},
issn = {1098-0121},
journal = {Physical Review B},
month = {jul},
number = {4},
pages = {045421},
title = {{First-principles study of edge chemical modifications in graphene nanodots}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.78.045421},
volume = {78},
year = {2008}
}
@inproceedings{Maruyama2011,
author = {<NAME> <NAME> <NAME>},
booktitle = {Supercomputing},
file = {:home/maxhutch/Documents/Mendeley Desktop/Maruyama et al. - 2011 - Physis An Implicitly Parallel Programming Model for Stencil Computations on Large-Scale GPU-Accelerated Superc.pdf:pdf},
isbn = {9781450307710},
keywords = {application framework,domain specific languages,high,perforamnce computing},
title = {{Physis : An Implicitly Parallel Programming Model for Stencil Computations on Large-Scale GPU-Accelerated Supercomputers}},
year = {2011}
}
@article{Brown2001,
abstract = {A precise measurement of the anomalous g value, a{\_}mu=(g-2)/2, for the positive muon has been made at the Brookhaven Alternating Gradient Synchrotron. The result a{\_}mu{\^{}}+=11 659 202(14)(6) X 10{\^{}}{\{}-10{\}} (1.3 ppm) is in good agreement with previous measurements and has an error one third that of the combined previous data. The current theoretical value from the standard model is a{\_}mu(SM)=11 659 159.6(6.7) X 10{\^{}}{\{}-10{\}} (0.57 ppm) and a{\_}mu(exp)-a{\_}mu(SM)=43(16) X 10{\^{}}{\{}-10{\}} in which a{\_}mu(exp) is the world average experimental value.},
archivePrefix = {arXiv},
arxivId = {hep-ex/0102017},
author = {<NAME>. and Collaboration, <NAME>},
doi = {10.1103/PhysRevLett.86.2227},
eprint = {0102017},
file = {:home/maxhutch/Documents/Mendeley Desktop/Brown, Collaboration - 2001 - Precise Measurement of the Positive Muon Anomalous Magnetic Moment.pdf:pdf},
keywords = {High Energy Physics - Experiment},
month = {feb},
pages = {5},
primaryClass = {hep-ex},
title = {{Precise Measurement of the Positive Muon Anomalous Magnetic Moment}},
url = {http://arxiv.org/abs/hep-ex/0102017},
year = {2001}
}
@book{Deville2002,
author = {Deville, MO and Fischer, PF and Mund, EH},
file = {:home/maxhutch/Documents/Mendeley Desktop/Deville, Fischer, Mund - 2002 - High-order methods for incompressible fluid flow.pdf:pdf},
pages = {190--229},
title = {{High-order methods for incompressible fluid flow}},
url = {http://books.google.com/books?hl=en{\&}lr={\&}id=COkBaz2Qo2cC{\&}oi=fnd{\&}pg=PR17{\&}dq=High-Order+Methods+for+Incompressible+Fluid+Flow{\&}ots=VMELLr63dZ{\&}sig=KVr0MyPPpvDsQ4ZsOl7gwLwbruo},
year = {2002}
}
@article{Rathinam2003,
author = {<NAME> Petzold, <NAME>.},
doi = {10.1137/S0036142901389049},
file = {:home/maxhutch/Documents/Mendeley Desktop/Rathinam, Petzold - 2003 - A new look at proper orthogonal decomposition.pdf:pdf},
issn = {0036-1429},
journal = {SIAM Journal on Numerical Analysis},
keywords = {dynamical systems,model reduction,numerical,proper orthogonal decomposition},
month = {jan},
number = {5},
pages = {1893--1925},
title = {{A new look at proper orthogonal decomposition}},
url = {http://epubs.siam.org/doi/abs/10.1137/S0036142901389049},
volume = {41},
year = {2003}
}
@article{Youngs1991,
author = {Youngs, DL},
file = {:home/maxhutch/Documents/Mendeley Desktop//Youngs - 1991 - Three‐dimensional numerical simulation of turbulent mixing by Rayleigh–Taylor instability.pdf:pdf},
journal = {Physics of Fluids A: Fluid Dynamics},
number = {May 2013},
pages = {1312--1320},
title = {{Three‐dimensional numerical simulation of turbulent mixing by Rayleigh–Taylor instability}},
url = {http://link.aip.org/link/?PFADEB/3/1312/1},
year = {1991}
}
@article{Paier2005,
abstract = {Present local and semilocal functionals show significant errors, for instance, in the energetics of small molecules and in the description of band gaps. One possible solution to these problems is the introduction of exact exchange and hybrid functionals. A plane-wave-based algorithm was implemented in VASP (Vienna ab-initio simulation package) to allow for the calculation of the exact exchange. To systematically assess the precision of the present implementation, calculations for the 55 molecules of the G2-1 quantum chemical test set were performed applying the PBE and PBE0 functionals. Excellent agreement for both atomization energies and geometries compared with the results obtained by GAUSSIAN 03 calculations using large basis sets (augmented correlation consistent polarized valence quadruple zeta for the geometry optimization and augmented correlation-consistent polarized valence quintuple zeta for the energy calculations) was found. The mean absolute error for atomization energies between VASP and the experiment is 8.6 and 3.7 kcalmol, as calculated with the PBE and PBE0 functionals, respectively. The mean deviations between VASP and GAUSSIAN are 0.46 and 0.49 kcalmol for the PBE and PBE0 functionals, respectively.},
author = {<NAME> and <NAME> <NAME> Kresse, Georg},
doi = {10.1063/1.1926272},
file = {:home/maxhutch/Documents/Mendeley Desktop/Paier et al. - 2005 - The Perdew-Burke-Ernzerhof exchange-correlation functional applied to the G2-1 test set using a plane-wave basis s.pdf:pdf},
issn = {0021-9606},
journal = {The Journal of chemical physics},
month = {jun},
number = {23},
pages = {234102},
pmid = {16008425},
title = {{The Perdew-Burke-Ernzerhof exchange-correlation functional applied to the G2-1 test set using a plane-wave basis set.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/16008425},
volume = {122},
year = {2005}
}
@article{Hutchinson2015,
author = {<NAME> <NAME>.},
journal = {in preparation.},
title = {{Numerical reproduction of single-mode Rayleigh-Taylor experiments}},
year = {2015}
}
@article{Glimm1990,
author = {<NAME> and Li, XL and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Glimm, Li, Menikoff - 1990 - A numerical study of bubble interactions in Rayleigh–Taylor instability for compressible fluids.pdf:pdf},
journal = {Physics of Fluids A: Fluid {\ldots}},
number = {May 2013},
pages = {2046--2054},
title = {{A numerical study of bubble interactions in Rayleigh–Taylor instability for compressible fluids}},
url = {http://link.aip.org/link/?PFADEB/2/2046/1},
volume = {2},
year = {1990}
}
@article{Wall1991,
author = {Wall, <NAME>.},
doi = {10.1145/106975.106991},
file = {:home/maxhutch/Documents/Mendeley Desktop/Wall - 1991 - Limits of instruction-level parallelism.pdf:pdf},
issn = {01635964},
journal = {ACM SIGARCH Computer Architecture News},
month = {apr},
number = {2},
pages = {176--188},
title = {{Limits of instruction-level parallelism}},
url = {http://portal.acm.org/citation.cfm?doid=106975.106991},
volume = {19},
year = {1991}
}
@article{DeBruijn1997,
author = {{<NAME>}, NG},
file = {:home/maxhutch/Documents/Mendeley Desktop/De Bruijn - 1997 - Remarks on Penrose tilings.pdf:pdf},
issn = {0937-5511},
journal = {ALGORITHMS AND COMBINATORICS},
pages = {264--283},
publisher = {SPRINGER},
title = {{Remarks on Penrose tilings}},
volume = {14},
year = {1997}
}
@article{Ganesh2011,
author = {<NAME>. and <NAME>.},
doi = {10.1016/j.jnoncrysol.2010.06.067},
file = {:home/maxhutch/Documents/Mendeley Desktop/Ganesh, Widom - 2011 - First-principles coexistence simulations of supercooled liquid silicon.pdf:pdf},
issn = {00223093},
journal = {Journal of Non-Crystalline Solids},
keywords = {Ab initio,Coexistence,Electron-localization,First-principles,Liquid metal,Molecular-dynamics,Phase-transition,Polymorph,Silicon,Supercooled},
month = {jan},
number = {2},
pages = {442--445},
publisher = {Elsevier B.V.},
title = {{First-principles coexistence simulations of supercooled liquid silicon}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0022309310005211},
volume = {357},
year = {2011}
}
@misc{TheMendeleySupportTeam2011,
abstract = {A quick introduction to Mendeley. Learn how Mendeley creates your personal digital library, how to organize and annotate documents, how to collaborate and share with colleagues, and how to generate citations and bibliographies.},
address = {London},
author = {{The Mendeley Support Team}},
booktitle = {Mendeley Desktop},
file = {:home/maxhutch/Documents/Mendeley Desktop//The Mendeley Support Team - 2011 - Getting Started with Mendeley(2).pdf:pdf},
keywords = {Mendeley,how-to,user manual},
pages = {1--16},
publisher = {Mendeley Ltd.},
title = {{Getting Started with Mendeley}},
url = {http://www.mendeley.com},
year = {2011}
}
@article{Aref1989,
author = {<NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Aref, Tryggvason - 1989 - Model of rayleigh-taylor instability.pdf:pdf},
journal = {Physical review letters},
number = {7},
pages = {749--752},
title = {{Model of rayleigh-taylor instability}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.62.749},
volume = {62},
year = {1989}
}
@article{Tangney2006,
abstract = {The theory underlying the Car-Parrinello extended-Lagrangian approach to ab initio molecular dynamics (CPMD) is reviewed and reexamined using "heavy" ice as a test system. It is emphasized that the adiabatic decoupling in CPMD is not a decoupling of electronic orbitals from the ions but only a decoupling of a subset of the orbital vibrational modes from the rest of the necessarily coupled system of orbitals and ions. Recent work [J. Chem. Phys. 116, 14 (2002)] has pointed out that, due to the orbital-ion coupling that remains once adiabatic decoupling has been achieved, a large value of the fictitious mass mu can lead to systematic errors in the computed forces in CPMD. These errors are further investigated in the present work with a focus on those parts of these errors that are not corrected simply by rescaling the masses of the ions. It is suggested that any comparison of the efficiencies of Born-Oppenheimer molecular dynamics (BOMD) and CPMD should be performed at a similar level of accuracy. If accuracy is judged according to the average magnitude of the systematic errors in the computed forces, the efficiency of BOMD compares more favorably to that of CPMD than previous comparisons have suggested.},
author = {<NAME>},
doi = {10.1063/1.2162893},
file = {:home/maxhutch/Documents/Mendeley Desktop/Tangney - 2006 - On the theory underlying the Car-Parrinello method and the role of the fictitious mass parameter.pdf:pdf},
issn = {0021-9606},
journal = {The Journal of chemical physics},
month = {jan},
number = {4},
pages = {044111},
pmid = {16460153},
title = {{On the theory underlying the Car-Parrinello method and the role of the fictitious mass parameter.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/16460153},
volume = {124},
year = {2006}
}
@article{Reuter2008,
author = {<NAME> Sukharev, Maxim and <NAME>},
doi = {10.1103/PhysRevLett.101.208303},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {nov},
number = {20},
pages = {1--4},
title = {{Laser Field Alignment of Organic Molecules on Semiconductor Surfaces: Toward Ultrafast Molecular Switches}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.101.208303},
volume = {101},
year = {2008}
}
@book{Mermin1976,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Mermin, Ashcroft - 1976 - Solid State Physics.pdf:pdf},
isbn = {9780126077568},
publisher = {Elsevier},
series = {Solid State Physics},
title = {{Solid State Physics}},
url = {http://books.google.com/books?hl=en{\&}lr={\&}id=sSaa9LkRLiIC{\&}oi=fnd{\&}pg=PP1{\&}dq=Solid+State+Physics{\&}ots=IMWfZ06uOE{\&}sig=HOSrCHiKax{\_}sEV1BnQbYjQbIUyI},
volume = {56},
year = {1976}
}
@techreport{Kelley2001,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Kelley - 2001 - Six questions about double-diffusive convection.pdf:pdf},
pages = {191--198},
title = {{Six questions about double-diffusive convection}},
url = {http://oai.dtic.mil/oai/oai?verb=getRecord{\&}metadataPrefix=html{\&}identifier=ADP013595},
year = {2001}
}
@article{Xian2011,
author = {<NAME> and <NAME> and <NAME>.},
doi = {10.1103/PhysRevB.84.075425},
file = {:home/maxhutch/Documents/Mendeley Desktop/Xian, Barraza-Lopez, Chou - 2011 - Effects of electrostatic fields and charge doping on the linear bands in twisted graphene bilayers.pdf:pdf},
issn = {1098-0121},
journal = {Physical Review B},
month = {aug},
number = {7},
pages = {1--6},
title = {{Effects of electrostatic fields and charge doping on the linear bands in twisted graphene bilayers}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.84.075425},
volume = {84},
year = {2011}
}
@article{Uhlmann2007,
author = {<NAME>},
doi = {10.1017/S0022112007007604},
file = {:home/maxhutch/Documents/Mendeley Desktop/Uhlmann et al. - 2007 - Marginally turbulent flow in a square duct.pdf:pdf},
issn = {0022-1120},
journal = {Journal of Fluid Mechanics},
pages = {153--162},
title = {{Marginally turbulent flow in a square duct}},
volume = {588},
year = {2007}
}
@article{Prasianakis2007,
author = {Prasianakis, <NAME> <NAME>},
doi = {10.1103/PhysRevE.76.016702},
file = {:home/maxhutch/Documents/Mendeley Desktop/Prasianakis, Karlin - 2007 - Lattice Boltzmann method for thermal flow simulation on standard lattices.pdf:pdf},
issn = {1539-3755},
journal = {Physical Review E},
month = {jul},
number = {1},
pages = {1--11},
title = {{Lattice Boltzmann method for thermal flow simulation on standard lattices}},
url = {http://link.aps.org/doi/10.1103/PhysRevE.76.016702},
volume = {76},
year = {2007}
}
@article{Glendinning2000,
author = {<NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>.},
doi = {10.1063/1.874024},
file = {:home/maxhutch/Documents/Mendeley Desktop/Glendinning et al. - 2000 - Ablation front Rayleigh–Taylor growth experiments in spherically convergent geometry.pdf:pdf},
issn = {1070664X},
journal = {Physics of Plasmas},
number = {5},
pages = {2033},
title = {{Ablation front Rayleigh–Taylor growth experiments in spherically convergent geometry}},
url = {http://link.aip.org/link/PHPAEN/v7/i5/p2033/s1{\&}Agg=doi},
volume = {7},
year = {2000}
}
@article{Conway,
author = {<NAME>.},
journal = {Scientific American},
number = {4},
pages = {4},
publisher = {Princeton University Press Princeton, NJ},
title = {{The game of life}},
volume = {223},
year = {1970}
}
@article{Vinuesa2014,
author = {<NAME> and <NAME>},
doi = {10.1080/14685248.YYYYxxxxxx},
file = {:home/maxhutch/Documents/Mendeley Desktop/Vinuesa, Noorani - 2014 - Aspect ratio effects in turbulent duct flows studied through direct numerical simulation.pdf:pdf},
issn = {14685248},
keywords = {direct numerical simulation,motions,secondary,secondary vortices,three-dimensional flows,turbulent duct flow,wall turbulence},
number = {00},
pages = {1--28},
title = {{Aspect ratio effects in turbulent duct flows studied through direct numerical simulation}},
url = {http://dx.doi.org/10.1080/14685248.2014.925623},
volume = {00},
year = {2014}
}
@article{Ross2000,
author = {<NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/<NAME> - 2000 - PVFS A parallel file system for Linux clusters.pdf:pdf},
journal = {in Proceedings of the 4th Annual Linux {\ldots}},
number = {October},
title = {{PVFS: A parallel file system for Linux clusters}},
url = {http://static.usenix.org/publications/library/proceedings/als00/2000papers/papers/full{\_}papers/carns/carns{\_}html/},
year = {2000}
}
@article{Morningstar2008,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Morningstar - 2008 - Explorations of Real Scalar Field Theory in 2 1 Space-Time Dimensions using the Monte Carlo Method.pdf:pdf},
journal = {Writing},
title = {{Explorations of Real Scalar Field Theory in 2 + 1 Space-Time Dimensions using the Monte Carlo Method}},
year = {2008}
}
@article{Borthakur2008,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Borthakur - 2008 - HDFS architecture guide.pdf:pdf},
journal = {Hadoop Apache Project. http://hadoop. apache. {\ldots}},
pages = {1--14},
title = {{HDFS architecture guide}},
url = {http://archive.cloudera.com/cdh4/cdh/4/mr1/hdfs{\_}design.pdf},
year = {2008}
}
@article{Pau2007,
author = {<NAME>},
doi = {10.1103/PhysRevE.76.046704},
file = {:home/maxhutch/Documents/Mendeley Desktop/{\_}Pau{\_}2007{\_}PRB{\_}Reduced basis methods for band structure calculations.pdf:pdf},
issn = {1539-3755},
journal = {Physical Review E},
month = {oct},
number = {4},
pages = {046704},
title = {{Reduced-basis method for band structure calculations}},
url = {http://link.aps.org/doi/10.1103/PhysRevE.76.046704},
volume = {76},
year = {2007}
}
@article{Kyrola2012,
author = {<NAME> and <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Kyrola, Blelloch, Guestrin - 2012 - GraphChi Large-scale graph computation on just a PC.pdf:pdf},
journal = {Proceedings of the 10th conference on {\ldots}},
title = {{GraphChi: Large-scale graph computation on just a PC}},
url = {https://www.usenix.org/system/files/conference/osdi12/osdi12-final-126.pdf},
year = {2012}
}
@article{Easwar2002,
author = {<NAME> <NAME> <NAME>},
doi = {10.1103/PhysRevE.66.045102},
file = {:home/maxhutch/Documents/Mendeley Desktop/Easwar, <NAME> - 2002 - Speeding to a stop The finite-time singularity of a spinning disk.pdf:pdf},
issn = {1063-651X},
journal = {Physical Review E},
month = {oct},
number = {4},
pages = {4--6},
title = {{Speeding to a stop: The finite-time singularity of a spinning disk}},
url = {http://link.aps.org/doi/10.1103/PhysRevE.66.045102},
volume = {66},
year = {2002}
}
@article{Stonebraker2010,
author = {<NAME>},
doi = {10.1145/1721654.1721659},
file = {:home/maxhutch/Documents/Mendeley Desktop/Stonebraker - 2010 - SQL databases v. NoSQL databases.pdf:pdf},
issn = {00010782},
journal = {Communications of the ACM},
month = {apr},
number = {4},
pages = {10},
title = {{SQL databases v. NoSQL databases}},
url = {http://portal.acm.org/citation.cfm?doid=1721654.1721659},
volume = {53},
year = {2010}
}
@article{Dest01,
author = {<NAME> <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Destainville, <NAME> - 2001 - Fixed-boundary octagonal random tilings a combinatorial approach.pdf:pdf},
issn = {0022-4715},
journal = {Journal of Statistical Physics},
keywords = {configurational,discrete dynamical systems,entropy,generalized partitions,random tilings,young tableaux},
number = {1},
pages = {147--190},
publisher = {Springer},
title = {{Fixed-boundary octagonal random tilings: a combinatorial approach}},
volume = {102},
year = {2001}
}
@article{Kudin2008,
abstract = {Zigzag graphene nanoribbons with saturated edges are investigated by first principles calculations. In these structures edge carbons have either two H or two F atoms, and are of sp(3) type. Compared to the previously studied ribbons with all carbons of sp(2) type, several similarities and differences are found. Specifically, in narrower ribbons the closed shell electronic state is the most stable one. In wider ribbons a state with antiferromagnetically spin-polarized edges is the lowest in energy, similarly to the ribbons with all sp(2) type carbons. A notable feature of narrower ribbons is significant single-double carbon bond alternation across the ribbon. Calculated Raman spectra contain a distinct blue shift signature of such alternation, which perhaps can be used for the experimental identification of ribbons of this type.},
author = {Kudin, <NAME>},
doi = {10.1021/nn700229v},
file = {:home/maxhutch/Documents/Mendeley Desktop/Kudin - 2008 - Zigzag graphene nanoribbons with saturated edges.pdf:pdf},
issn = {1936-086X},
journal = {ACS nano},
keywords = {Computer Simulation,Crystallization,Crystallization: methods,Graphite,Graphite: chemistry,Macromolecular Substances,Macromolecular Substances: chemistry,Materials Testing,Models, Chemical,Models, Molecular,Molecular Conformation,Nanostructures,Nanostructures: chemistry,Nanostructures: ultrastructure,Nanotechnology,Nanotechnology: methods,Particle Size,Surface Properties},
month = {mar},
number = {3},
pages = {516--22},
pmid = {19206578},
title = {{Zigzag graphene nanoribbons with saturated edges.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/19206578},
volume = {2},
year = {2008}
}
@misc{TheMendeleySupportTeam2011c,
abstract = {A quick introduction to Mendeley. Learn how Mendeley creates your personal digital library, how to organize and annotate documents, how to collaborate and share with colleagues, and how to generate citations and bibliographies.},
address = {London},
author = {{The Mendeley Support Team}},
booktitle = {Mendeley Desktop},
file = {:home/maxhutch/Documents/Mendeley Desktop//The Mendeley Support Team - 2011 - Getting Started with Mendeley(2).pdf:pdf},
keywords = {Mendeley,how-to,user manual},
pages = {1--16},
publisher = {Mendeley Ltd.},
title = {{Getting Started with Mendeley}},
url = {http://www.mendeley.com},
year = {2011}
}
@article{Masago2006,
author = {<NAME> <NAME> Katayama-Yoshida, Hiroshi},
doi = {10.1103/PhysRevB.73.104102},
file = {:home/maxhutch/Documents/Mendeley Desktop/Masago, Shirai, Katayama-Yoshida - 2006 - Crystal stability of $\alpha$- and $\beta$-boron.pdf:pdf},
issn = {1098-0121},
journal = {Physical Review B},
month = {mar},
number = {10},
pages = {1--10},
title = {{Crystal stability of $\alpha$- and $\beta$-boron}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.73.104102},
volume = {73},
year = {2006}
}
@book{Mogensen2007,
author = {<NAME>}.},
booktitle = {diku.dk},
publisher = {Torben {\AE}gidius Mogensen},
title = {{Basics of compiler design}},
url = {http://www.diku.dk/hjemmesider/ansatte/torbenm/Basics/basics{\_}lulu2.pdf},
year = {2007}
}
@article{Cabot2006,
author = {Cabot, <NAME>. and Cook, <NAME>.},
doi = {10.1038/nphys361},
file = {:home/maxhutch/Documents/Mendeley Desktop//Cabot, Cook - 2006 - Reynolds number effects on Rayleigh–Taylor instability with possible implications for type Ia supernovae.pdf:pdf},
issn = {1745-2473},
journal = {Nature Physics},
month = {jul},
number = {8},
pages = {562--568},
title = {{Reynolds number effects on Rayleigh–Taylor instability with possible implications for type Ia supernovae}},
url = {http://www.nature.com/doifinder/10.1038/nphys361},
volume = {2},
year = {2006}
}
@article{Lim2011,
author = {<NAME> and <NAME> and <NAME> and Kaminsky, Michael},
file = {:home/maxhutch/Documents/Mendeley Desktop/Lim et al. - 2011 - SILT A memory-efficient, high-performance key-value store.pdf:pdf},
isbn = {9781450309776},
journal = {Proceedings of the Twenty- {\ldots}},
keywords = {algorithms,design,flash,measurement,memory efficiency,perfor-,performance},
pages = {1--13},
title = {{SILT: A memory-efficient, high-performance key-value store}},
url = {http://dl.acm.org/citation.cfm?id=2043558},
year = {2011}
}
@book{Shankar1994,
author = {<NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/Shankar - 1994 - Principles of quantum mechanics.pdf:pdf},
publisher = {Springer},
title = {{Principles of quantum mechanics}},
url = {http://books.google.com/books?hl=en{\&}lr={\&}id=2zypV5EbKuIC{\&}oi=fnd{\&}pg=PA1{\&}dq=Principles+of+quantum+mechanics{\&}ots=v3wvmg84Ra{\&}sig=cezLVFBvr7CkghJI7aPHVsWQnDk},
year = {1994}
}
@article{Young2001,
author = {<NAME>. and <NAME> <NAME>. and <NAME>.},
doi = {10.1017/S0022112001005870},
file = {:home/maxhutch/Documents/Mendeley Desktop//Young et al. - 2001 - On the miscible Rayleigh–Taylor instability two and three dimensions.pdf:pdf},
issn = {0022-1120},
journal = {Journal of Fluid Mechanics},
month = {oct},
pages = {377--408},
title = {{On the miscible Rayleigh–Taylor instability: two and three dimensions}},
url = {http://www.journals.cambridge.org/abstract{\_}S0022112001005870},
volume = {447},
year = {2001}
}
@article{Propp1996,
author = {Propp, <NAME> and Wilson, <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Pro<NAME> - 1996 - Exact sampling with coupled Markov chains and applications to statistical mechanics.pdf:pdf},
issn = {1042-9832},
journal = {Random Structures and Algorithms},
month = {aug},
number = {1-2},
pages = {223--252},
title = {{Exact sampling with coupled Markov chains and applications to statistical mechanics}},
volume = {9},
year = {1996}
}
@article{Tolke2008,
author = {T{\"{o}}lke, Jonas},
doi = {10.1007/s00791-008-0120-2},
file = {:home/maxhutch/Documents/Mendeley Desktop/T{\"{o}}lke - 2008 - Implementation of a Lattice Boltzmann kernel using the Compute Unified Device Architecture developed by nVIDIA.pdf:pdf},
issn = {1432-9360},
journal = {Computing and Visualization in Science},
month = {jul},
number = {1},
pages = {29--39},
title = {{Implementation of a Lattice Boltzmann kernel using the Compute Unified Device Architecture developed by nVIDIA}},
url = {http://www.springerlink.com/index/10.1007/s00791-008-0120-2},
volume = {13},
year = {2008}
}
@article{Savini2010,
author = {<NAME>. and <NAME>. and <NAME>},
doi = {10.1103/PhysRevLett.105.037002},
file = {:home/maxhutch/Documents/Mendeley Desktop/Savini, <NAME> - 2010 - First-Principles Prediction of Doped Graphane as a High-Temperature Electron-Phonon Superconductor.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {jul},
number = {3},
pages = {1--4},
title = {{First-Principles Prediction of Doped Graphane as a High-Temperature Electron-Phonon Superconductor}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.105.037002},
volume = {105},
year = {2010}
}
@article{Bell2004,
author = {<NAME> <NAME> <NAME>},
doi = {10.1016/j.jcp.2003.10.035},
file = {:home/maxhutch/Documents/Mendeley Desktop/Bell et al. - 2004 - Adaptive low Mach number simulations of nuclear flame microphysics.pdf:pdf},
issn = {00219991},
journal = {Journal of Computational Physics},
month = {apr},
number = {2},
pages = {677--694},
title = {{Adaptive low Mach number simulations of nuclear flame microphysics}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0021999103005783},
volume = {195},
year = {2004}
}
@inproceedings{Jaynes1996,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Jaynes - 1996 - The Evolution of Carnot's Principle.pdf:pdf},
pages = {1--17},
title = {{The Evolution of Carnot's Principle}},
volume = {1},
year = {1996}
}
@book{Banks2008,
author = {<NAME>},
booktitle = {Matrix},
file = {:home/maxhutch/Documents/Mendeley Desktop/Banks - 2008 - Modern quantum field theory.pdf:pdf},
isbn = {9780521850827},
title = {{Modern quantum field theory}},
url = {http://wwwzb.fz-juelich.de/contentenrichment/inhaltsverzeichnisse/bis2009/ISBN-978-0-521-85082-7.pdf},
year = {2008}
}
@article{Hay2002,
author = {Hay, <NAME>},
doi = {10.1386/jvap.2.1and2.64},
file = {:home/maxhutch/Documents/Mendeley Desktop/Hay - 2002 - Concrete abstractions a Della Volpean perspective on studio practice as research.pdf:pdf},
issn = {1470-2029},
journal = {Journal of Visual Art Practice},
month = {jul},
number = {1+2},
pages = {64--77},
title = {{Concrete abstractions ? a Della Volpean perspective on studio practice as research}},
url = {http://www.atypon-link.com/INT/doi/abs/10.1386/jvap.2.1and2.64},
volume = {2},
year = {2002}
}
@article{Sekimoto2011,
author = {<NAME> <NAME> <NAME> <NAME>.},
doi = {10.1063/1.3593462},
file = {:home/maxhutch/Documents/Mendeley Desktop/Sekimoto et al. - 2011 - Turbulence- and buoyancy-driven secondary flow in a horizontal square duct heated from below.pdf:pdf},
issn = {10706631},
journal = {Physics of Fluids},
number = {7},
title = {{Turbulence- and buoyancy-driven secondary flow in a horizontal square duct heated from below}},
volume = {23},
year = {2011}
}
@article{Ogitsu2012,
author = {<NAME> <NAME>},
doi = {10.1016/j.solidstatesciences.2012.03.005},
file = {:home/maxhutch/Documents/Mendeley Desktop/Ogitsu, Schwegler - 2012 - The $\alpha$–$\beta$ phase boundary of elemental boron.pdf:pdf},
issn = {12932558},
journal = {Solid State Sciences},
month = {mar},
pages = {5--7},
title = {{The $\alpha$–$\beta$ phase boundary of elemental boron}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S1293255812000799},
year = {2012}
}
@article{Baughman1987,
author = {<NAME>. and <NAME>. and <NAME>.},
doi = {10.1063/1.453405},
file = {:home/maxhutch/Documents/Mendeley Desktop/Baughman, Eckhardt, Kertesz - 1987 - Structure-property predictions for new planar forms of carbon Layered phases containing sp2 and sp.pdf:pdf},
issn = {00219606},
journal = {The Journal of Chemical Physics},
number = {11},
pages = {6687},
title = {{Structure-property predictions for new planar forms of carbon: Layered phases containing sp2 and sp atoms}},
url = {http://link.aip.org/link/JCPSA6/v87/i11/p6687/s1{\&}Agg=doi},
volume = {87},
year = {1987}
}
@article{Widom1989,
author = {<NAME>. and Deng, DP and Henley, CL},
file = {:home/maxhutch/Documents/Mendeley Desktop/Widom, Deng, Henley - 1989 - Transfer-matrix analysis of a two-dimensional quasicrystal.pdf:pdf},
issn = {1079-7114},
journal = {Physical review letters},
number = {3},
pages = {310--313},
publisher = {APS},
title = {{Transfer-matrix analysis of a two-dimensional quasicrystal}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.63.310},
volume = {63},
year = {1989}
}
@inproceedings{L'Ecuyer1997a,
author = {<NAME>.},
booktitle = {Proceedings of the 29th conference on Winter simulation},
file = {:home/maxhutch/Documents/Mendeley Desktop/L'Ecuyer - 1997 - Uniform random number generators a review.pdf:pdf},
pages = {127--134},
publisher = {IEEE Computer Society},
title = {{Uniform random number generators: a review}},
url = {http://portal.acm.org/citation.cfm?id=268437.268461},
volume = {54},
year = {1997}
}
@article{Pavlo2009,
author = {<NAME> <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Pavlo, <NAME> - 2009 - A comparison of approaches to large-scale data analysis.pdf:pdf},
isbn = {9781605585512},
journal = {{\ldots} on Management of data},
keywords = {Database Applications,Database Programming,Use Cases},
pages = {165--178},
title = {{A comparison of approaches to large-scale data analysis}},
url = {http://dl.acm.org/citation.cfm?id=1559865},
year = {2009}
}
@article{Jiang2001,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Jiang - 2001 - Evolution complexity of the elementary cellular automaton rule 18.pdf:pdf},
journal = {Complex Systems},
pages = {271--295},
title = {{Evolution complexity of the elementary cellular automaton rule 18}},
url = {http://scholar.google.com/scholar?hl=en{\&}btnG=Search{\&}q=intitle:Evolution+Complexity+of+the+Elementary+Cellular+Automaton+Rule+18{\#}0},
volume = {13},
year = {2001}
}
@article{Marzari2011,
archivePrefix = {arXiv},
arxivId = {arXiv:1112.5411v2},
author = {<NAME> and <NAME> and <NAME>},
eprint = {arXiv:1112.5411v2},
file = {:home/maxhutch/Documents/Mendeley Desktop/Marzari, Mostofi, Yates - 2011 - Maximally localized Wannier functions Theory and applications.pdf:pdf},
journal = {arXiv},
title = {{Maximally localized Wannier functions: Theory and applications}},
url = {http://arxiv.org/abs/1112.5411},
year = {2011}
}
@article{Yang2008,
author = {<NAME> Monine, <NAME> Hlavacek, William},
doi = {10.1103/PhysRevE.78.031910},
file = {:home/maxhutch/Documents/Mendeley Desktop/Yang et al. - 2008 - Kinetic Monte Carlo method for rule-based modeling of biochemical networks.pdf:pdf},
issn = {1539-3755},
journal = {Physical Review E},
month = {sep},
number = {3},
pages = {1--7},
title = {{Kinetic Monte Carlo method for rule-based modeling of biochemical networks}},
url = {http://link.aps.org/doi/10.1103/PhysRevE.78.031910},
volume = {78},
year = {2008}
}
@article{Habich2011,
abstract = {GPUs offer several times the floating point performance and memory bandwidth of current standard two socket CPU servers, e.g. NVIDIA C2070 vs. Intel Xeon Westmere X5650. The lattice Boltzmann method has been established as a flow solver in recent years and was one of the first flow solvers to be successfully ported and that performs well on GPUs. We demonstrate advanced optimization strategies for a D3Q19 lattice Boltzmann based incompressible flow solver for GPGPUs and CPUs based on NVIDIA CUDA and OpenCL. Since the implemented algorithm is limited by memory bandwidth, we concentrate on improving memory access. Basic data layout issues for optimal data access are explained and discussed. Furthermore, the algorithmic steps are rearranged to improve scattered access of the GPU memory. The importance of occupancy is discussed as well as optimization strategies to improve overall concurrency. We arrive at a well-optimized GPU kernel, which is integrated into a larger framework that can handle single phase fluid flow simulations as well as particle-laden flows. Our 3D LBM GPU implementation reaches up to 650 MLUPS in single precision and 290 MLUPS in double precision on an NVIDIA Tesla C2070.},
archivePrefix = {arXiv},
arxivId = {1112.0850},
author = {<NAME> K{\"{o}}stler, <NAME>, <NAME> <NAME>},
eprint = {1112.0850},
month = {dec},
pages = {10},
title = {{Performance engineering for the Lattice Boltzmann method on GPGPUs: Architectural requirements and performance results}},
url = {http://arxiv.org/abs/1112.0850},
year = {2011}
}
@article{Mendoza2010,
author = {<NAME> <NAME> <NAME>.},
doi = {10.1103/PhysRevLett.105.014502},
file = {:home/maxhutch/Documents/Mendeley Desktop/Mendoza et al. - 2010 - Fast Lattice Boltzmann Solver for Relativistic Hydrodynamics.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {jun},
number = {1},
pages = {2--5},
title = {{Fast Lattice Boltzmann Solver for Relativistic Hydrodynamics}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.105.014502},
volume = {105},
year = {2010}
}
@article{Methfessel1989,
author = {Methfessel, M and Paxton, AT},
file = {:home/maxhutch/Documents/Mendeley Desktop/Methfessel, Paxton - 1989 - High-precision sampling for Brillouin-zone integration in metals.pdf:pdf},
journal = {Physical Review B},
number = {6},
pages = {3616--3621},
title = {{High-precision sampling for Brillouin-zone integration in metals}},
url = {http://prb.aps.org/abstract/PRB/v40/i6/p3616{\_}1},
volume = {40},
year = {1989}
}
@article{Kohn1965,
author = {<NAME> Sham, LJ},
file = {:home/maxhutch/Documents/Mendeley Desktop/PhysRev.140.A1133.pdf:pdf},
journal = {Physical Review},
number = {1951},
title = {{Self-consistent equations including exchange and correlation effects}},
url = {http://prola.aps.org/abstract/PR/v140/i4A/pA1133{\_}1},
volume = {385},
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}
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author = {<NAME> <NAME> <NAME> <NAME> <NAME> <NAME> <NAME> <NAME> <NAME>.},
doi = {10.1063/1.870688},
file = {:home/maxhutch/Documents/Mendeley Desktop/Kilkenny et al. - 1994 - A review of the ablative stabilization of the Rayleigh–Taylor instability in regimes relevant to inertial con.pdf:pdf},
issn = {1070664X},
journal = {Physics of Plasmas},
number = {5},
pages = {1379},
title = {{A review of the ablative stabilization of the Rayleigh–Taylor instability in regimes relevant to inertial confinement fusion}},
url = {http://link.aip.org/link/PHPAEN/v1/i5/p1379/s1{\&}Agg=doi},
volume = {1},
year = {1994}
}
@inproceedings{Ding2004,
author = {<NAME>},
booktitle = {Proceedings of the twenty-first international conference on Machine learning},
file = {:home/maxhutch/Documents/Mendeley Desktop/Ding, He - 2004 - K-means clustering via principal component analysis.pdf:pdf},
title = {{K-means clustering via principal component analysis}},
year = {2004}
}
@article{Chernozatonskii2012,
author = {Chernozatonskii, LA and Kvashnin, DG},
file = {:home/maxhutch/Documents/Mendeley Desktop/Chernozatonskii, Kvashnin - 2012 - Strong Influence of Graphane Island Configurations on the Electronic Properties of a Mixed GrapheneGr.pdf:pdf},
journal = {The Journal of Physical {\ldots}},
pages = {7--11},
title = {{Strong Influence of Graphane Island Configurations on the Electronic Properties of a Mixed Graphene/Graphane Superlattice}},
url = {http://pubs.acs.org/doi/abs/10.1021/jp304596y},
year = {2012}
}
@book{Feynman1965,
author = {<NAME>},
booktitle = {1965, edited by Feynman, <NAME>.; Leighton},
title = {{Feynman lectures on physics}},
url = {http://adsabs.harvard.edu/abs/1965flp..book.....F},
year = {1965}
}
@article{Bettelheim2012,
archivePrefix = {arXiv},
arxivId = {arXiv:1202.4573v1},
author = {<NAME> and Gruzberg, IA},
eprint = {arXiv:1202.4573v1},
file = {:home/maxhutch/Documents/Mendeley Desktop/Bettelheim, Gruzberg - 2012 - Quantum Hall transitions an exact theory based on conformal restriction.pdf:pdf},
journal = {Arxiv preprint arXiv:1202.4573},
title = {{Quantum Hall transitions: an exact theory based on conformal restriction}},
url = {http://arxiv.org/abs/1202.4573},
year = {2012}
}
@article{Alon1994,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Alon et al. - 1994 - Scale invariant mixing rates of hydrodynamically unstable interfaces.pdf:pdf},
journal = {Physical review letters},
number = {18},
pages = {2867--2870},
title = {{Scale invariant mixing rates of hydrodynamically unstable interfaces}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.72.2867},
volume = {72},
year = {1994}
}
@article{Hohenberg1964,
author = {<NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Hohenberg, Kohn - 1964 - Inhomogeneous electron gas.pdf:pdf},
journal = {Physical review},
number = {1962},
title = {{Inhomogeneous electron gas}},
url = {http://prola.aps.org/abstract/PR/v136/i3B/pB864{\_}1},
volume = {155},
year = {1964}
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@article{Faeder2009,
address = {Totowa, NJ},
author = {<NAME> and Blinov, <NAME> and Hlavacek, <NAME>},
doi = {10.1007/978-1-59745-525-1},
editor = {<NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/Faeder, Blinov, Hlavacek - 2009 - Systems Biology.pdf:pdf},
isbn = {978-1-934115-64-0},
journal = {Methods},
keywords = {combinatorial complexity,computational systems biology,formal languages,interactions,mathematical modeling,metabolic networks,ordinary differential equations,protein,signal transduction,software,stochastic simulation},
pages = {113--167},
publisher = {Humana Press},
series = {Methods in Molecular Biology},
title = {{Systems Biology}},
url = {http://www.springerlink.com/index/10.1007/978-1-59745-525-1},
volume = {500},
year = {2009}
}
@article{Ma2011,
author = {<NAME> and <NAME> and <NAME>},
doi = {10.1103/PhysRevE.84.016704},
file = {:home/maxhutch/Documents/Mendeley Desktop/Ma, <NAME> - 2011 - Lattice Boltzmann method for one-dimensional radiation transfer.pdf:pdf},
issn = {1539-3755},
journal = {Physical Review E},
month = {jul},
number = {1},
pages = {1--5},
title = {{Lattice Boltzmann method for one-dimensional radiation transfer}},
url = {http://link.aps.org/doi/10.1103/PhysRevE.84.016704},
volume = {84},
year = {2011}
}
@article{Petzold2009,
author = {<NAME>.},
doi = {10.1177/1094342009106066},
file = {:home/maxhutch/Documents/Mendeley Desktop/Petzold - 2009 - Efficient Parallelization of the Stochastic Simulation Algorithm for Chemically Reacting Systems On the Graphics Proces.pdf:pdf},
issn = {1094-3420},
journal = {International Journal of High Performance Computing Applications},
keywords = {chemically reacting systems,ssa,stochastic},
month = {jun},
number = {2},
pages = {107--116},
title = {{Efficient Parallelization of the Stochastic Simulation Algorithm for Chemically Reacting Systems On the Graphics Processing Unit}},
url = {http://hpc.sagepub.com/cgi/doi/10.1177/1094342009106066},
volume = {24},
year = {2009}
}
@article{Glimm1988,
author = {<NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Glimm, Li - 1988 - Validation of the Sharp–Wheeler bubble merger model from experimental and computational data.pdf:pdf},
journal = {Physics of Fluids},
number = {May 2013},
title = {{Validation of the Sharp–Wheeler bubble merger model from experimental and computational data}},
url = {http://link.aip.org/link/?PFLDAS/31/2077/1},
year = {1988}
}
@article{Gentile2001,
author = {<NAME>.},
doi = {10.1006/jcph.2001.6836},
file = {:home/maxhutch/Documents/Mendeley Desktop/Gentile - 2001 - Implicit Monte Carlo Diffusion—An Acceleration Method for Monte Carlo Time-Dependent Radiative Transfer Simulations.pdf:pdf},
issn = {00219991},
journal = {Journal of Computational Physics},
month = {sep},
number = {2},
pages = {543--571},
title = {{Implicit Monte Carlo Diffusion—An Acceleration Method for Monte Carlo Time-Dependent Radiative Transfer Simulations}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0021999101968366},
volume = {172},
year = {2001}
}
@article{Perdew1981,
author = {<NAME>. and Zunger, Alex},
file = {:home/maxhutch/Documents/Mendeley Desktop/Perdew, Zunger - 1981 - Self-interaction correction to density-functional approximations for many-electron systems.pdf:pdf},
journal = {Physical Review B},
number = {10},
title = {{Self-interaction correction to density-functional approximations for many-electron systems}},
url = {http://prb.aps.org/abstract/PRB/v23/i10/p5048{\_}1},
volume = {23},
year = {1981}
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@book{Goldstein2000,
author = {<NAME>},
booktitle = {American Journal of Physics},
file = {:home/maxhutch/Documents/Mendeley Desktop/Goldstein - 2000 - Classical mechanics.pdf:pdf},
title = {{Classical mechanics}},
url = {http://link.aip.org/link/?AJPIAS/70/782/17},
volume = {70},
year = {2000}
}
@article{Vanderbilt1990,
author = {Vanderbilt, David},
file = {:home/maxhutch/Documents/Mendeley Desktop/Vanderbilt - 1990 - Soft self-consistent pseudopotentials in a generalized eigenvalue formalism.pdf:pdf},
issn = {0003-6935},
journal = {Physical Review B},
month = {dec},
number = {23},
pages = {4228},
pmid = {18235770},
title = {{Soft self-consistent pseudopotentials in a generalized eigenvalue formalism}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/19580042 http://prb.aps.org/abstract/PRB/v41/i11/p7892{\_}1},
volume = {25},
year = {1990}
}
@techreport{Micikevicius2011,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Micikevicius, Decembe - 2011 - Multi-GPU Programming.pdf:pdf},
title = {{Multi-GPU Programming}},
year = {2011}
}
@article{Kendall2000,
author = {<NAME>. and Apr{\`{a}}, Edoardo and Bernholdt, <NAME>. and <NAME>. and <NAME>, <NAME>. and Harrison, <NAME>. and <NAME> <NAME> Windus, <NAME>. and Wong, <NAME>.},
doi = {10.1016/S0010-4655(00)00065-5},
file = {:home/maxhutch/Documents/Mendeley Desktop/Kendall et al. - 2000 - High performance computational chemistry An overview of NWChem a distributed parallel application.pdf:pdf},
issn = {00104655},
journal = {Computer Physics Communications},
keywords = {distributed tools,electronic structure,molecular dynamics,parallel computational chemistry,portability},
month = {jun},
number = {1-2},
pages = {260--283},
title = {{High performance computational chemistry: An overview of NWChem a distributed parallel application}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0010465500000655},
volume = {128},
year = {2000}
}
@article{Harl2009,
author = {<NAME> and <NAME>},
doi = {10.1103/PhysRevLett.103.056401},
file = {:home/maxhutch/Documents/Mendeley Desktop/Harl, Kresse - 2009 - Accurate Bulk Properties from Approximate Many-Body Techniques.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {jul},
number = {5},
pages = {4--7},
title = {{Accurate Bulk Properties from Approximate Many-Body Techniques}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.103.056401},
volume = {103},
year = {2009}
}
@article{Bui-Thanh2008,
author = {<NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Bui-Thanh, Willcox, Ghattas - 2008 - Model reduction for large-scale systems with high-dimensional parametric input space.pdf:pdf},
journal = {SIAM Journal on Scientific Computing},
keywords = {070694855,1,10,1137,37m99,37n40,65k10,ams subject classifications,cost-,doi,heat conduction,introduction,model reduction,model reduction is a,optimization,sampling,systematic approach for deriving},
number = {6},
pages = {3270--3288},
title = {{Model reduction for large-scale systems with high-dimensional parametric input space}},
url = {http://epubs.siam.org/doi/abs/10.1137/070694855},
volume = {30},
year = {2008}
}
@techreport{Featherston2010,
author = {<NAME>},
booktitle = {University of Illinois},
file = {:home/maxhutch/Documents/Mendeley Desktop/Featherston - 2010 - Cassandra Principles and application.pdf:pdf},
pages = {1--17},
title = {{Cassandra: Principles and application}},
url = {http://disi.unitn.it/{~}montreso/ds/papers/Cassandra.pdf},
year = {2010}
}
@misc{Reuter2011a,
author = {<NAME> and <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Reuter, <NAME> - 2011 - Computational Science Meets Materials Chemistry A Bilingual Investigation of Surface Effects in Nanos.pdf:pdf},
title = {{Computational Science Meets Materials Chemistry : A Bilingual Investigation of Surface Effects in Nanoscale Systems}},
year = {2011}
}
@article{Dunweg2007,
archivePrefix = {arXiv},
arxivId = {arXiv:0707.1581v1},
author = {<NAME>. and <NAME>. and <NAME>.},
eprint = {arXiv:0707.1581v1},
file = {:home/maxhutch/Documents/Mendeley Desktop/D{\"{u}}nweg, Schiller, Ladd - 2007 - Statistical mechanics of the fluctuating lattice Boltzmann equation.pdf:pdf},
journal = {Physical Review E},
number = {3},
pages = {036704},
publisher = {APS},
title = {{Statistical mechanics of the fluctuating lattice Boltzmann equation}},
url = {http://pre.aps.org/abstract/PRE/v76/i3/e036704},
volume = {76},
year = {2007}
}
@book{Grunbaum1987,
address = {New York},
author = {<NAME>. and <NAME>.},
publisher = {Freeman},
title = {{Tilings and Patterns}},
year = {1987}
}
@article{Jozsa2001,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Jozsa - 2001 - Quantum factoring, discrete logarithms, and the hidden subgroup problem.pdf:pdf},
journal = {Computing in Science {\&} Engineering},
pages = {34--43},
title = {{Quantum factoring, discrete logarithms, and the hidden subgroup problem}},
url = {http://ieeexplore.ieee.org/xpls/abs{\_}all.jsp?arnumber=909000},
year = {2001}
}
@article{Carlberg2011,
author = {<NAME> <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Carlberg, <NAME> - 2011 - The GNAT nonlinear model reduction method and its application to fluid dynamics problems.pdf:pdf},
journal = {{\ldots} Fluid Mechanics {\ldots}},
number = {650},
pages = {1--23},
title = {{The GNAT nonlinear model reduction method and its application to fluid dynamics problems}},
url = {http://arc.aiaa.org/doi/pdf/10.2514/6.2011-3112},
year = {2011}
}
@article{Feenstra2013,
author = {<NAME> <NAME> <NAME> <NAME> <NAME> <NAME> <NAME>.},
doi = {10.1103/PhysRevB.87.041406},
file = {:home/maxhutch/Documents/Mendeley Desktop/Feenstra et al. - 2013 - Low-energy electron reflectivity from graphene.pdf:pdf},
issn = {1098-0121},
journal = {Physical Review B},
month = {jan},
number = {4},
pages = {041406},
title = {{Low-energy electron reflectivity from graphene}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.87.041406},
volume = {87},
year = {2013}
}
@techreport{Marin2015,
author = {<NAME> and <NAME>},
keywords = {ANL/MCS-TM-353},
mendeley-tags = {ANL/MCS-TM-353},
title = {{Continuous Adjoints for Large Scale Fluid Flow Simulations using the Spectral Element Code Nek5000}},
year = {2015}
}
@article{Galmiche1999,
author = {<NAME> and <NAME> and Glendinning, SG},
file = {:home/maxhutch/Documents/Mendeley Desktop/Galmiche, Cherfils, Glendinning - 1999 - Numerical Analysis of Shperically Convergent Rayleigh-Taylor Experiments on the Nova Laser.pdf:pdf},
title = {{Numerical Analysis of Shperically Convergent Rayleigh-Taylor Experiments on the Nova Laser}},
url = {https://e-reports-ext.llnl.gov/pdf/236326.pdf},
year = {1999}
}
@article{Kopp1976,
author = {<NAME> and Pneuman, GW},
file = {:home/maxhutch/Documents/Mendeley Desktop/Kopp, Pneuman - 1976 - Magnetic reconnection in the corona and the loop prominence phenomenon.pdf:pdf},
journal = {Solar Physics},
pages = {85--98},
title = {{Magnetic reconnection in the corona and the loop prominence phenomenon}},
url = {http://link.springer.com/article/10.1007/BF00206193},
volume = {50},
year = {1976}
}
@article{Schwingenschlogl2009,
author = {<NAME> <NAME>.},
doi = {10.1103/PhysRevLett.102.227002},
file = {:home/maxhutch/Documents/Mendeley Desktop/Schwingenschl{\"{o}}gl, Schuster - 2009 - First-Principles Calculations of Electronic States and Self-Doping Effects at a 45° Grain Boundary.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {jun},
number = {22},
pages = {2--5},
title = {{First-Principles Calculations of Electronic States and Self-Doping Effects at a 45° Grain Boundary in the High Temperature YBa2Cu3O7 Superconductor}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.102.227002},
volume = {102},
year = {2009}
}
@article{Shechtman1984,
author = {<NAME> <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Shechtman et al. - 1984 - Metallic phase with long-range orientational order and no translational symmetry.pdf:pdf},
journal = {Physical Review Letters},
number = {20},
pages = {1951--1954},
title = {{Metallic phase with long-range orientational order and no translational symmetry}},
volume = {53},
year = {1984}
}
@article{Cleveland2010,
author = {<NAME>. and <NAME>. and Palmer, <NAME>.},
doi = {10.1016/j.jcp.2010.04.004},
file = {:home/maxhutch/Documents/Mendeley Desktop/Cleveland, Gentile, Palmer - 2010 - An extension of implicit Monte Carlo diffusion Multigroup and the difference formulation.pdf:pdf},
issn = {00219991},
journal = {Journal of Computational Physics},
month = {aug},
number = {16},
pages = {5707--5723},
publisher = {Elsevier Inc.},
title = {{An extension of implicit Monte Carlo diffusion: Multigroup and the difference formulation}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0021999110001804},
volume = {229},
year = {2010}
}
@article{Saxena2012,
author = {<NAME> and Swift, MM and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Saxena, Swift, Zhang - 2012 - FlashTier A lightweight, consistent and durable storage cache.pdf:pdf},
isbn = {9781450312233},
journal = {Proceedings of the 7th ACM european {\ldots}},
keywords = {consis-,device interface,solid-state cache},
pages = {267--280},
title = {{FlashTier: A lightweight, consistent and durable storage cache}},
url = {http://dl.acm.org/citation.cfm?id=2168863},
year = {2012}
}
@article{Daley2012,
author = {<NAME> <NAME> <NAME>},
doi = {10.1002/cpe},
file = {:home/maxhutch/Documents/Mendeley Desktop/Daley, Vanella, Dubey - 2012 - Optimization of multigrid based elliptic solver for large scale simulations in the FLASH code.pdf:pdf},
journal = {Concurrency and {\ldots}},
keywords = {amr,flash,multigrid,scalability},
number = {February},
pages = {2346--2361},
title = {{Optimization of multigrid based elliptic solver for large scale simulations in the FLASH code}},
url = {http://onlinelibrary.wiley.com/doi/10.1002/cpe.2821/full},
year = {2012}
}
@techreport{Koutsofios1991,
author = {<NAME> and <NAME> and Others},
booktitle = {North},
file = {:home/maxhutch/Documents/Mendeley Desktop/Koutsofios, North, others - 1991 - Drawing graphs with dot.pdf:pdf},
institution = {Technical Report 910904-59113-08TM, AT{\&}T Bell Laboratories, Murray Hill, NJ},
pages = {1--40},
title = {{Drawing graphs with dot}},
url = {http://www.phil.uu.nl/{~}js/graphviz/dotguide.pdf},
year = {1991}
}
@article{Rikanati2000,
author = {<NAME>. and <NAME>. and <NAME>. and <NAME>.},
doi = {10.1086/313331},
file = {:home/maxhutch/Documents/Mendeley Desktop//Rikanati et al. - 2000 - Statistical Mechanics Merger Model for Hydrodynamic Instabilities.pdf:pdf},
issn = {0067-0049},
journal = {The Astrophysical Journal Supplement Series},
month = {apr},
number = {2},
pages = {451--457},
title = {{Statistical Mechanics Merger Model for Hydrodynamic Instabilities}},
url = {http://stacks.iop.org/0067-0049/127/i=2/a=451},
volume = {127},
year = {2000}
}
@article{Wilkes1996a,
author = {<NAME>, <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Wilkes et al. - 1996 - The HP AutoRAID hierarchical storage system.pdf:pdf},
journal = {{\ldots} on Computer Systems ( {\ldots}},
number = {February},
pages = {108--136},
title = {{The HP AutoRAID hierarchical storage system}},
url = {http://dl.acm.org/citation.cfm?id=225539},
volume = {14},
year = {1996}
}
@article{Moffatt2000,
author = {<NAME>},
doi = {10.1038/35009017},
file = {:home/maxhutch/Documents/Mendeley Desktop/Moffatt - 2000 - Euler's disk and its finite-time singularity.pdf:pdf},
issn = {1476-4687},
journal = {Nature},
month = {apr},
number = {6780},
pages = {833--4},
pmid = {10786779},
title = {{Euler's disk and its finite-time singularity}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/10786779},
volume = {404},
year = {2000}
}
@book{Sakurai1994,
author = {<NAME>.},
booktitle = {Reading, MA: Addison Wesley,| c1985, edited by <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Sakurai - 1994 - Modern quantum mechanics.pdf:pdf},
title = {{Modern quantum mechanics}},
url = {http://adsabs.harvard.edu/abs/1985mqm..book.....S},
volume = {1},
year = {1994}
}
@article{Kresse1996,
author = {<NAME> and <NAME>.},
doi = {10.1016/0927-0256(96)00008-0},
file = {:home/maxhutch/Documents/Mendeley Desktop/Kresse - 1996 - Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis set.pdf:pdf},
issn = {09270256},
journal = {Computational Materials Science},
month = {jul},
number = {1},
pages = {15--50},
title = {{Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis set}},
url = {http://linkinghub.elsevier.com/retrieve/pii/0927025696000080},
volume = {6},
year = {1996}
}
@article{Hussein2009,
author = {<NAME>.},
doi = {10.1098/rspa.2008.0471},
file = {:home/maxhutch/Documents/Mendeley Desktop/Hussein - 2009 - Reduced Bloch mode expansion for periodic media band structure calculations.pdf:pdf},
issn = {1364-5021},
journal = {Proc. R. Soc. A},
month = {jul},
number = {2109},
pages = {2825--2848},
title = {{Reduced Bloch mode expansion for periodic media band structure calculations}},
url = {http://rspa.royalsocietypublishing.org/cgi/doi/10.1098/rspa.2008.0471},
volume = {465},
year = {2009}
}
@book{Boyd2004,
author = {<NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Boyd, Vandenberghe - 2004 - Convex optimization.pdf:pdf},
isbn = {9780521833783},
title = {{Convex optimization}},
url = {http://books.google.com/books?hl=en{\&}lr={\&}id=mYm0bLd3fcoC{\&}oi=fnd{\&}pg=PR11{\&}dq=Convex+Optimization{\&}ots=tc7YzHLHJX{\&}sig=qgQ-Kv0{\_}PQdYZ-KbDQoGh46u8iQ},
year = {2004}
}
@article{Smalyuk2009,
author = {<NAME> <NAME> <NAME> <NAME> <NAME> <NAME> <NAME>.},
doi = {10.1103/PhysRevLett.103.105001},
file = {:home/maxhutch/Documents/Mendeley Desktop/Smalyuk et al. - 2009 - Rayleigh-Taylor Growth Measurements in the Acceleration Phase of Spherical Implosions on OMEGA.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {sep},
number = {10},
pages = {105001},
title = {{Rayleigh-Taylor Growth Measurements in the Acceleration Phase of Spherical Implosions on OMEGA}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.103.105001},
volume = {103},
year = {2009}
}
@article{Corbett2012,
author = {<NAME> <NAME>, <NAME>, Andrew},
file = {:home/maxhutch/Documents/Mendeley Desktop/Corbett et al. - 2012 - Spanner Google's globally-distributed database.pdf:pdf},
journal = {To appear in {\ldots}},
pages = {251--264},
title = {{Spanner: Google's globally-distributed database}},
url = {https://www.usenix.org/system/files/conference/osdi12/osdi12-final-16.pdf},
year = {2012}
}
@article{Decandia2007,
author = {<NAME> Hastorun, <NAME>, <NAME> Lakshman, <NAME>, <NAME>, <NAME>, <NAME>, Werner},
file = {:home/maxhutch/Documents/Mendeley Desktop/Decandia et al. - 2007 - Dynamo amazon's highly available key-value store.pdf:pdf},
isbn = {9781595935915},
journal = {{\ldots} of twenty-first ACM {\ldots}},
pages = {205--220},
title = {{Dynamo: amazon's highly available key-value store}},
url = {http://www.read.seas.harvard.edu/{~}kohler/class/cs239-w08/decandia07dynamo.pdf},
year = {2007}
}
@article{Thurston1994,
archivePrefix = {arXiv},
arxivId = {arXiv:math/9404236v1},
author = {<NAME>},
eprint = {9404236v1},
file = {:home/maxhutch/Documents/Mendeley Desktop/Thurston - 1994 - On proof and progress in mathematics.pdf:pdf},
journal = {American Mathematical Society},
number = {2},
pages = {161--177},
primaryClass = {arXiv:math},
title = {{On proof and progress in mathematics}},
url = {http://www.ams.org/journals/bull/1994-30-02/S0273-0979-1994-00502-6/S0273-0979-1994-00502-6.pdf},
volume = {30},
year = {1994}
}
@article{Abadi2012,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Abadi - 2012 - Consistency Tradeoffs in Modern Distributed Database System Design.pdf:pdf},
number = {February},
pages = {37--42},
title = {{Consistency Tradeoffs in Modern Distributed Database System Design}},
year = {2012}
}
@article{Takemura2002,
abstract = {The two components of the force acting on a clean almost spherical bubble rising near a plane vertical wall in a quiescent liquid are determined experimentally. This is achieved by using an apparatus in which a CCD camera and a microscope follow the rising bubble. This apparatus allows us to measure accurately the bubble radius, rise speed and distance between the bubble and the wall. Thereby the drag and lift components of the hydrodynamic force are determined for Reynolds numbers Re (based on bubble diameter, rise velocity U, and kinematic viscosity v) less than 40. The results show the existence of two different regimes, according to the value of the dimensionless separation L defined as the ratio between the distance from the bubble centre to the wall and the viscous length scale v/U. When L is O(1) or more, experimental results corresponding to Reynolds numbers up to unity are found to be in good agreement with an analytical solution obtained in the Oseen approximation by adapting the calculation of Vasseur and Cox (1977) to the case of an inviscid bubble. When L is o(1), higher-order effects not taken into account in previous analytical investigations become important and measurements show that the deformation of the bubble is significant when the viscosity of the surrounding liquid is large enough. In this regime, experimental results for the drag force and shape of the bubble are found to agree well with recent theoretical predictions obtained by Magnaudet, Takagi and Legendre (2002) but the measured lift force tends to exceed the prediction as the separation decreases.},
author = {<NAME> <NAME> <NAME> <NAME>},
doi = {10.1017/S0022112002008388},
file = {:home/maxhutch/Documents/Mendeley Desktop/S0022112002008388a.pdf:pdf},
issn = {0022-1120},
journal = {Journal of Fluid Mechanics},
number = {461},
pages = {277--300},
title = {{Drag and lift forces on a bubble rising near a vertical wall in a viscous liquid}},
url = {http://www.journals.cambridge.org/abstract{\_}S0022112002008388},
volume = {461},
year = {2002}
}
@article{Widom1987,
author = {<NAME>, KJ and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Widom, Strandburg, Swendsen - 1987 - Quasicrystal equilibrium state.pdf:pdf},
journal = {Physical review letters},
number = {7},
pages = {706--709},
title = {{Quasicrystal equilibrium state}},
volume = {58},
year = {1987}
}
@article{Agullo2009,
author = {Agullo, <NAME>, <NAME>, Hatem and <NAME> and <NAME>},
doi = {10.1088/1742-6596/180/1/012037},
file = {:home/maxhutch/Documents/Mendeley Desktop/Agullo et al. - 2009 - Numerical linear algebra on emerging architectures The PLASMA and MAGMA projects.pdf:pdf},
issn = {1742-6596},
journal = {Journal of Physics: Conference Series},
month = {jul},
pages = {012037},
title = {{Numerical linear algebra on emerging architectures: The PLASMA and MAGMA projects}},
url = {http://stacks.iop.org/1742-6596/180/i=1/a=012037?key=<KEY>},
volume = {180},
year = {2009}
}
@article{Keller2007,
author = {Keller, <NAME>. and Burkhart, <NAME>. and <NAME>.},
doi = {10.1109/ICUWB.2007.4380975},
file = {:home/maxhutch/Documents/Mendeley Desktop/Keller, Burkhart, Phuong - 2007 - Ultra-Wideband Direct Sampling Receiver.pdf:pdf},
isbn = {978-1-4244-0520-6},
journal = {2007 IEEE International Conference on Ultra-Wideband},
month = {sep},
pages = {387--392},
publisher = {Ieee},
title = {{Ultra-Wideband Direct Sampling Receiver}},
url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=4380975},
year = {2007}
}
@article{Dolui2012,
author = {<NAME> and Pemmaraju, CD and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Dolui, Pemmaraju, Sanvito - 2012 - Electric Field Effects on Armchair MoS2 Nanoribbons.pdf:pdf},
journal = {ACS nano},
keywords = {a,and charge density wave,bulk mos 2 has,electric field effect,magnetism,mo is,mos 2,nanoribbons,prototypical layered structure where,spin crossover,two-dimensional nanostructures},
number = {6},
pages = {4823--4834},
title = {{Electric Field Effects on Armchair MoS2 Nanoribbons}},
url = {http://pubs.acs.org/doi/abs/10.1021/nn301505x},
year = {2012}
}
@article{Ongaro,
author = {Ongaro, Diego and Rumble, SM},
file = {:home/maxhutch/Documents/Mendeley Desktop/Ongaro, Rumble - 2011 - Fast crash recovery in RAMCloud.pdf:pdf},
isbn = {9781450309776},
journal = {Proceedings of the {\ldots}},
keywords = {crash recovery,main memory databases,scala-,storage systems},
pages = {29--41},
title = {{Fast crash recovery in RAMCloud}},
url = {http://dl.acm.org/citation.cfm?id=2043560},
year = {2011}
}
@article{Blochl1994,
author = {Bl{\"{<NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/Bl{\"{o}}chl - 1994 - Projector augmented-wave method.pdf:pdf},
issn = {1550-235X},
journal = {Physical Review B},
number = {24},
pages = {17953--17979},
publisher = {APS},
title = {{Projector augmented-wave method}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.50.17953},
volume = {50},
year = {1994}
}
@inproceedings{Venkataraman2013,
author = {<NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Venkataraman, Bodzsar, Schreiber - 2013 - Presto Distributed Machine Learning and Graph Processing with Sparse Matrices.pdf:pdf},
isbn = {9781450319942},
title = {{Presto : Distributed Machine Learning and Graph Processing with Sparse Matrices}},
year = {2013}
}
@article{Shan2005,
abstract = {Gaussian split Ewald (GSE) is a versatile Ewald mesh method that is fast and accurate when used with both real-space and k-space Poisson solvers. While real-space methods are known to be asymptotically superior to k-space methods in terms of both computational cost and parallelization efficiency, k-space methods such as smooth particle-mesh Ewald (SPME) have thus far remained dominant because they have been more efficient than existing real-space methods for simulations of typical systems in the size range of current practical interest. Real-space GSE, however, is approximately a factor of 2 faster than previously described real-space Ewald methods for the level of force accuracy typically required in biomolecular simulations, and is competitive with leading k-space methods even for systems of moderate size. Alternatively, GSE may be combined with a k-space Poisson solver, providing a conveniently tunable k-space method that performs comparably to SPME. The GSE method follows naturally from a uniform framework that we introduce to concisely describe the differences between existing Ewald mesh methods.},
author = {<NAME> and Klepeis, <NAME> and Eastwood, <NAME> and Dror, <NAME> and <NAME>},
doi = {10.1063/1.1839571},
file = {:home/maxhutch/Documents/Mendeley Desktop/Shan et al. - 2005 - Gaussian split Ewald A fast Ewald mesh method for molecular simulation.pdf:pdf},
issn = {0021-9606},
journal = {The Journal of chemical physics},
month = {feb},
number = {5},
pages = {54101},
pmid = {15740304},
title = {{Gaussian split Ewald: A fast Ewald mesh method for molecular simulation.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/15740304},
volume = {122},
year = {2005}
}
@article{Kadanoff2001,
author = {<NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/Kadanoff - 2001 - Turbulent heat flow Structures and scaling.pdf:pdf},
journal = {Physics Today},
number = {8},
pages = {34--39},
publisher = {American Institute of Physics},
title = {{Turbulent heat flow: Structures and scaling}},
url = {http://jfi.uchicago.edu/{~}leop/SciencePapers/RB-PT.pdf},
volume = {54},
year = {2001}
}
@phdthesis{fischer1989spectral,
author = {<NAME>},
school = {Massachusetts Institute of Technology},
title = {{Spectral element solution of the Navier-Stokes equations on high performance distributed-memory parallel processors}},
year = {1989}
}
@misc{Chen2011,
author = {<NAME>},
booktitle = {Configurations},
file = {:home/maxhutch/Documents/Mendeley Desktop//Chen - 2011 - Configurations.pdf:pdf},
title = {{Configurations}},
year = {2011}
}
@article{Chen1998,
author = {<NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Chen, Doolen - 1998 - Lattice Boltzmann method for fluid flows.pdf:pdf},
journal = {Annual review of fluid mechanics},
keywords = {fluid flow simulation,lattice boltzmann method,mesoscopic approach},
title = {{Lattice Boltzmann method for fluid flows}},
url = {http://www.annualreviews.org/doi/abs/10.1146/annurev.fluid.30.1.329},
year = {1998}
}
@article{Elser1985,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Elser - 1985 - Comment on Quasicrystals A new class of ordered structures.pdf:pdf},
journal = {Physical review letters},
number = {15},
pages = {1985},
title = {{Comment on "Quasicrystals: A new class of ordered structures"}},
volume = {54},
year = {1985}
}
@book{Martin,
author = {<NAME>.},
publisher = {Cambridge Univ Pr},
title = {{Electronic structure: basic theory and practical methods}},
year = {2004}
}
@article{Everson1995,
author = {<NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Everson, Sirovich - 1995 - Karhunen–Loeve procedure for gappy data.pdf:pdf},
journal = {JOSA A},
number = {8},
pages = {1657--1664},
title = {{Karhunen–Loeve procedure for gappy data}},
url = {http://www.opticsinfobase.org/abstract.cfm?{\&}id=33249},
volume = {12},
year = {1995}
}
@article{Glendinning1998,
author = {<NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Budil, Cherfils, Drake - 1998 - Experimental measurements of hydrodynamic instabilities on NOVA of relevance to astrophysics.pdf:pdf},
title = {{Experimental measurements of hydrodynamic instabilities on NOVA of relevance to astrophysics}},
url = {http://www.osti.gov/energycitations/product.biblio.jsp?osti{\_}id=7486},
year = {1998}
}
@article{Chikatamarla2009,
author = {<NAME> and <NAME>},
doi = {10.1103/PhysRevE.79.046701},
file = {:home/maxhutch/Documents/Mendeley Desktop/Chikatamarla, Karlin - 2009 - Lattices for the lattice Boltzmann method.pdf:pdf},
issn = {1539-3755},
journal = {Physical Review E},
month = {apr},
number = {4},
pages = {1--18},
title = {{Lattices for the lattice Boltzmann method}},
url = {http://link.aps.org/doi/10.1103/PhysRevE.79.046701},
volume = {79},
year = {2009}
}
@article{Elser1984,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Elser - 1984 - Solution of the dimer problem on a hexagonal lattice with boundary.pdf:pdf},
issn = {0305-4470},
journal = {Journal of Physics A: Mathematical and General},
month = {may},
number = {7},
pages = {1509--1513},
title = {{Solution of the dimer problem on a hexagonal lattice with boundary}},
volume = {17},
year = {1984}
}
@article{Yamanaka2010,
author = {<NAME> <NAME> <NAME>},
doi = {10.1016/j.tcs.2010.01.002},
file = {:home/maxhutch/Documents/Mendeley Desktop/Yamanaka et al. - 2010 - Efficient enumeration of all ladder lotteries and its application.pdf:pdf},
issn = {03043975},
journal = {Theoretical Computer Science},
keywords = {enumeration algorithm},
month = {mar},
number = {16-18},
pages = {1714--1722},
publisher = {Elsevier B.V.},
title = {{Efficient enumeration of all ladder lotteries and its application}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0304397510000058},
volume = {411},
year = {2010}
}
@techreport{Schumacher2010,
author = {<NAME>.},
booktitle = {Physical review D: Particles and fields},
file = {:home/maxhutch/Documents/Mendeley Desktop/Schumacher - 2010 - Cosmic Ray Muons.pdf:pdf},
institution = {Carnegie Mellon University},
issn = {0556-2821},
month = {dec},
number = {11},
pmid = {10012770},
title = {{Cosmic Ray Muons}},
volume = {42},
year = {2010}
}
@incollection{Walther2004,
author = {<NAME> and <NAME>},
booktitle = {Numerical Mathematics and Advanced Applications},
pages = {834--843},
title = {{Advantages of Binomial Checkpointing for Memory-reduced Adjoint Calculations}},
year = {2004}
}
@article{Linden2006,
author = {<NAME>. and <NAME>. and <NAME>.},
doi = {10.1017/S0022112094000777},
file = {:home/maxhutch/Documents/Mendeley Desktop//Linden, Redondo, Youngs - 1994 - Molecular mixing in Rayleigh–Taylor instability.pdf:pdf},
issn = {0022-1120},
journal = {Journal of Fluid Mechanics},
month = {apr},
number = {-1},
pages = {97},
title = {{Molecular mixing in Rayleigh–Taylor instability}},
url = {http://www.journals.cambridge.org/abstract{\_}S0022112094000777},
volume = {265},
year = {1994}
}
@book{Wolfram,
author = {<NAME>.},
publisher = {Wolfram Media Champaign, IL},
title = {{A new kind of science}},
url = {http://austms.org.au/Jobs/Reviews2.html},
volume = {1},
year = {2002}
}
@article{Prendergast2009,
author = {<NAME>, <NAME>},
doi = {10.1103/PhysRevB.80.235126},
file = {:home/maxhutch/Documents/Mendeley Desktop/Prendergast, Louie - 2009 - Bloch-state-based interpolation An efficient generalization of the Shirley approach to interpolating electro.pdf:pdf},
issn = {1098-0121},
journal = {Physical Review B},
month = {dec},
number = {23},
pages = {1--10},
title = {{Bloch-state-based interpolation: An efficient generalization of the Shirley approach to interpolating electronic structure}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.80.235126},
volume = {80},
year = {2009}
}
@article{Freitas2008,
author = {<NAME>. and <NAME>.},
doi = {10.1147/rd.524.0439},
file = {:home/maxhutch/Documents/Mendeley Desktop/Freitas, Wilcke - 2008 - Storage-class memory The next storage system technology.pdf:pdf},
issn = {0018-8646},
journal = {IBM Journal of Research and Development},
month = {jul},
number = {4.5},
pages = {439--447},
title = {{Storage-class memory: The next storage system technology}},
url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=5388608},
volume = {52},
year = {2008}
}
@article{Novoselov2005,
abstract = {Quantum electrodynamics (resulting from the merger of quantum mechanics and relativity theory) has provided a clear understanding of phenomena ranging from particle physics to cosmology and from astrophysics to quantum chemistry. The ideas underlying quantum electrodynamics also influence the theory of condensed matter, but quantum relativistic effects are usually minute in the known experimental systems that can be described accurately by the non-relativistic Schr{\"{o}}dinger equation. Here we report an experimental study of a condensed-matter system (graphene, a single atomic layer of carbon) in which electron transport is essentially governed by Dirac's (relativistic) equation. The charge carriers in graphene mimic relativistic particles with zero rest mass and have an effective 'speed of light' c* approximately 10(6) m s(-1). Our study reveals a variety of unusual phenomena that are characteristic of two-dimensional Dirac fermions. In particular we have observed the following: first, graphene's conductivity never falls below a minimum value corresponding to the quantum unit of conductance, even when concentrations of charge carriers tend to zero; second, the integer quantum Hall effect in graphene is anomalous in that it occurs at half-integer filling factors; and third, the cyclotron mass m(c) of massless carriers in graphene is described by E = m(c)c*2. This two-dimensional system is not only interesting in itself but also allows access to the subtle and rich physics of quantum electrodynamics in a bench-top experiment.},
author = {Novoselov, <NAME> Geim, <NAME> Morozov, <NAME> Jiang, <NAME> Katsnelson, <NAME> Grigorieva, <NAME> and Dubonos, <NAME> and Firsov, a a},
doi = {10.1038/nature04233},
file = {:home/maxhutch/Documents/Mendeley Desktop/Novoselov et al. - 2005 - Two-dimensional gas of massless Dirac fermions in graphene.pdf:pdf},
issn = {1476-4687},
journal = {Nature},
month = {nov},
number = {7065},
pages = {197--200},
pmid = {16281030},
title = {{Two-dimensional gas of massless Dirac fermions in graphene.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/16281030},
volume = {438},
year = {2005}
}
@article{Gardner1988,
author = {<NAME> <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Gardner, Glimm, McBryan - 1988 - The dynamics of bubble growth for Rayleigh–Taylor unstable interfaces.pdf:pdf},
journal = {Physics of {\ldots}},
title = {{The dynamics of bubble growth for Rayleigh–Taylor unstable interfaces}},
url = {http://link.aip.org/link/?PFLDAS/31/447/1},
year = {1988}
}
@article{Krepel2011,
author = {<NAME> and <NAME>},
doi = {10.1016/j.susc.2010.11.019},
file = {:home/maxhutch/Documents/Mendeley Desktop/Krepel, Hod - 2011 - Lithium adsorption on armchair graphene nanoribbons.pdf:pdf},
issn = {00396028},
journal = {Surface Science},
keywords = {Armchair graphene nanoribbon,Chemical adsorption,Graphene,Lithium,density functional theory},
month = {sep},
number = {17-18},
pages = {1633--1642},
publisher = {Elsevier B.V.},
title = {{Lithium adsorption on armchair graphene nanoribbons}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0039602810004772},
volume = {605},
year = {2011}
}
@incollection{Ridwan2004,
author = {<NAME>., <NAME>., <NAME>.},
booktitle = {Lecture Notes in Computer Science},
file = {:home/maxhutch/Documents/Mendeley Desktop/Ridwan - 2004 - A Parallel Implementation of Gillespie's Direct Algorithm.pdf:pdf},
title = {{A Parallel Implementation of Gillespie's Direct Algorithm}},
year = {2004}
}
@article{Blote1982,
author = {<NAME> and <NAME>},
journal = {Journal of Physics A: Mathematical and General},
number = {11},
pages = {L631},
title = {{Roughening transitions and the zero-temperature triangular Ising antiferromagnet}},
volume = {15},
year = {1982}
}
@article{Malko2012a,
author = {<NAME> and <NAME> and G{\"{o}}rling, Andreas},
doi = {10.1103/PhysRevB.86.045443},
file = {:home/maxhutch/Documents/Mendeley Desktop/Malko, Neiss, G{\"{o}}rling - 2012 - Two-dimensional materials with Dirac cones Graphynes containing heteroatoms.pdf:pdf},
issn = {1098-0121},
journal = {Physical Review B},
month = {jul},
number = {4},
pages = {1--6},
title = {{Two-dimensional materials with Dirac cones: Graphynes containing heteroatoms}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.86.045443},
volume = {86},
year = {2012}
}
@article{Nair2012,
author = {<NAME>. and <NAME> <NAME> <NAME> <NAME> <NAME> <NAME>.},
doi = {10.1038/nphys2183},
file = {:home/maxhutch/Documents/Mendeley Desktop/Nair et al. - 2012 - Spin-half paramagnetism in graphene induced by point defects.pdf:pdf},
issn = {1745-2473},
journal = {Nature Physics},
month = {jan},
number = {3},
pages = {199--202},
publisher = {Nature Publishing Group},
title = {{Spin-half paramagnetism in graphene induced by point defects}},
url = {http://www.nature.com/doifinder/10.1038/nphys2183},
volume = {8},
year = {2012}
}
@article{Tangney2002,
author = {<NAME>. and <NAME>.},
doi = {10.1063/1.1423331},
file = {:home/maxhutch/Documents/Mendeley Desktop/Tangney, Scandolo - 2002 - How well do Car–Parrinello simulations reproduce the Born–Oppenheimer surface Theory and examples.pdf:pdf},
issn = {00219606},
journal = {The Journal of Chemical Physics},
number = {1},
pages = {14},
title = {{How well do Car–Parrinello simulations reproduce the Born–Oppenheimer surface? Theory and examples}},
url = {http://link.aip.org/link/JCPSA6/v116/i1/p14/s1{\&}Agg=doi},
volume = {116},
year = {2002}
}
@article{Ping2008,
author = {<NAME>. and <NAME> <NAME> <NAME> <NAME>.},
doi = {10.1063/1.2844365},
file = {:home/maxhutch/Documents/Mendeley Desktop/Ping et al. - 2008 - Dielectric function of warm dense gold.pdf:pdf},
issn = {1070664X},
journal = {Physics of Plasmas},
number = {5},
pages = {056303},
title = {{Dielectric function of warm dense gold}},
url = {http://scitation.aip.org/content/aip/journal/pop/15/5/10.1063/1.2844365},
volume = {15},
year = {2008}
}
@article{Reuter2010,
abstract = {Closed-form expressions for all elements of a d-dimensional tight-binding metal's Green function matrix are presented and used to explore edge effects of a surface. We find that, when moving from the surface into the bulk, the number of layers passed before the surfaced substrate behaves like the bulk decreases with dimensionality. In particular, the surface of a one-dimensional substrate becomes indistinguishable from the bulk after O(10(1)-10(2)) layers, a two-dimensional substrate after O(10(1)) layers, and a three-dimensional substrate after O(10(0)) layers. Finally, the effects of substrate dimensionality on molecule-substrate interactions are discussed.},
author = {Reuter, <NAME>},
doi = {10.1063/1.3447960},
file = {:home/maxhutch/Documents/Mendeley Desktop/Reuter - 2010 - Closed-form Green functions, surface effects, and the importance of dimensionality in tight-binding metals.pdf:pdf},
issn = {1089-7690},
journal = {The Journal of chemical physics},
month = {jul},
number = {3},
pages = {034703},
pmid = {20649346},
title = {{Closed-form Green functions, surface effects, and the importance of dimensionality in tight-binding metals.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/20649346},
volume = {133},
year = {2010}
}
@article{Tantisiriroj2011,
author = {<NAME> <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Tantisiriroj, Patil, Gibson - 2011 - On the duality of data-intensive file system design reconciling HDFS and PVFS.pdf:pdf},
isbn = {9781450307710},
journal = {{\ldots} and Analysis (SC), {\ldots}},
keywords = {cloud computing,file systems,hadoop,hdfs,pvfs},
title = {{On the duality of data-intensive file system design: reconciling HDFS and PVFS}},
url = {http://ieeexplore.ieee.org/xpls/abs{\_}all.jsp?arnumber=6114443},
year = {2011}
}
@article{Weir1998,
author = {<NAME>. and <NAME>. and <NAME>.},
doi = {10.1103/PhysRevLett.80.3763},
file = {:home/maxhutch/Documents/Mendeley Desktop/Weir, Chandler, Goodwin - 1998 - Rayleigh-Taylor Instability Experiments Examining Feedthrough Growth in an Incompressible, Convergent G.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {apr},
number = {17},
pages = {3763--3766},
title = {{Rayleigh-Taylor Instability Experiments Examining Feedthrough Growth in an Incompressible, Convergent Geometry}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.80.3763},
volume = {80},
year = {1998}
}
@article{Son2006,
abstract = {Electrical current can be completely spin polarized in a class of materials known as half-metals, as a result of the coexistence of metallic nature for electrons with one spin orientation and insulating nature for electrons with the other. Such asymmetric electronic states for the different spins have been predicted for some ferromagnetic metals--for example, the Heusler compounds--and were first observed in a manganese perovskite. In view of the potential for use of this property in realizing spin-based electronics, substantial efforts have been made to search for half-metallic materials. However, organic materials have hardly been investigated in this context even though carbon-based nanostructures hold significant promise for future electronic devices. Here we predict half-metallicity in nanometre-scale graphene ribbons by using first-principles calculations. We show that this phenomenon is realizable if in-plane homogeneous electric fields are applied across the zigzag-shaped edges of the graphene nanoribbons, and that their magnetic properties can be controlled by the external electric fields. The results are not only of scientific interest in the interplay between electric fields and electronic spin degree of freedom in solids but may also open a new path to explore spintronics at the nanometre scale, based on graphene.},
author = {<NAME> and Cohen, <NAME> and Louie, <NAME>},
doi = {10.1038/nature05180},
file = {:home/maxhutch/Documents/Mendeley Desktop/Son, Cohen, Louie - 2006 - Half-metallic graphene nanoribbons.pdf:pdf},
issn = {1476-4687},
journal = {Nature},
month = {nov},
number = {7117},
pages = {347--9},
pmid = {17108960},
title = {{Half-metallic graphene nanoribbons.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/17108960},
volume = {444},
year = {2006}
}
@article{Kleinman1982,
author = {Kleinman, <NAME> Bylander, <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/PhysRevLett.48.1425.pdf:pdf},
journal = {Physical Review Letters},
number = {20},
pages = {1425--1428},
title = {{Efficacious form for model pseudopotentials}},
url = {http://prl.aps.org/abstract/PRL/v48/i20/p1425{\_}1},
volume = {48},
year = {1982}
}
@article{Jain2013,
author = {<NAME> <NAME> and Hautier, Geoffroy and <NAME> Richards, <NAME> and Dacek, <NAME> <NAME> Gunter, <NAME>, <NAME>, <NAME>, <NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/Jain et al. - 2013 - Commentary The Materials Project A materials genome approach to accelerating materials innovation.pdf:pdf},
journal = {APL Materials},
pages = {1--11},
title = {{Commentary: The Materials Project: A materials genome approach to accelerating materials innovation}},
url = {http://scitation.aip.org/content/aip/journal/aplmater/1/1/10.1063/1.4812323},
volume = {1},
year = {2013}
}
@article{Genovese2009,
abstract = {We present the implementation of a full electronic structure calculation code on a hybrid parallel architecture with graphic processing units (GPUs). This implementation is performed on a free software code based on Daubechies wavelets. Such code shows very good performances, systematic convergence properties, and an excellent efficiency on parallel computers. Our GPU-based acceleration fully preserves all these properties. In particular, the code is able to run on many cores which may or may not have a GPU associated, and thus on parallel and massive parallel hybrid machines. With double precision calculations, we may achieve considerable speedup, between a factor of 20 for some operations and a factor of 6 for the whole density functional theory code.},
author = {<NAME>{\'{e}}<NAME>{\c{<NAME>},
doi = {10.1063/1.3166140},
file = {:home/maxhutch/Documents/Mendeley Desktop/Genovese et al. - 2009 - Density functional theory calculation on many-cores hybrid central processing unit-graphic processing unit arch.pdf:pdf},
issn = {1089-7690},
journal = {The Journal of chemical physics},
month = {jul},
number = {3},
pages = {034103},
pmid = {19624177},
title = {{Density functional theory calculation on many-cores hybrid central processing unit-graphic processing unit architectures.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/19624177},
volume = {131},
year = {2009}
}
@article{Chen2009,
abstract = {The explosion of next-generation sequencing data has spawned the design of new algorithms and software tools to provide efficient mapping for different read lengths and sequencing technologies. In particular, ABI's sequencer (SOLiD system) poses a big computational challenge with its capacity to produce very large amounts of data, and its unique strategy of encoding sequence data into color signals.},
author = {<NAME> <NAME> <NAME>},
doi = {10.1093/bioinformatics/btp486},
file = {:home/maxhutch/Documents/Mendeley Desktop/Chen, <NAME> - 2009 - PerM efficient mapping of short sequencing reads with periodic full sensitive spaced seeds.pdf:pdf},
issn = {1367-4811},
journal = {Bioinformatics (Oxford, England)},
keywords = {Algorithms,Base Sequence,Computational Biology,Computational Biology: methods,Molecular Sequence Data,Sequence Analysis, DNA,Sequence Analysis, DNA: methods,Software},
month = {oct},
number = {19},
pages = {2514--21},
pmid = {19675096},
title = {{PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds.}},
url = {http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2752623{\&}tool=pmcentrez{\&}rendertype=abstract},
volume = {25},
year = {2009}
}
@article{Dresselhaus1955,
author = {<NAME> <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Unknown - 1952 - Cyclotron resonance of electrons and holes.pdf:pdf},
journal = {Physical Review},
number = {2},
title = {{Cyclotron resonance of electrons and holes in silicon and germanium crystals}},
url = {http://prola.aps.org/abstract/PR/v98/i2/p368{\_}1},
volume = {98},
year = {1955}
}
@article{Belsky2002,
abstract = {The materials community in both science and industry use crystallographic data models on a daily basis to visualize, explain and predict the behavior of chemicals and materials. Access to reliable information on the structure of crystalline materials helps researchers concentrate experimental work in directions that optimize the discovery process. The Inorganic Crystal Structure Database (ICSD) is a comprehensive collection of more than 60 000 crystal structure entries for inorganic materials and is produced cooperatively by Fachinformationszentrum Karlsruhe (FIZ), Germany, and the US National Institute of Standards and Technology (NIST). The ICSD is disseminated in computerized formats with scientific software tools to exploit the content of the database. Features of a new Windows-based graphical user interface for the ICSD are outlined, together with directions for future development in support of materials research and design.},
author = {<NAME> <NAME> <NAME> <NAME>},
doi = {10.1107/S0108768102006948},
file = {:home/maxhutch/Documents/Mendeley Desktop/Belsky et al. - 2002 - New developments in the Inorganic Crystal Structure Database (ICSD) accessibility in support of materials researc.pdf:pdf},
isbn = {2089998520},
issn = {01087681},
journal = {Acta Crystallogr. Sect. B},
month = {may},
number = {3},
pages = {364--369},
publisher = {International Union of Crystallography},
title = {{New developments in the Inorganic Crystal Structure Database (ICSD): accessibility in support of materials research and design}},
url = {http://scripts.iucr.org/cgi-bin/paper?S0108768102006948},
volume = {58},
year = {2002}
}
@article{Amsler2012,
author = {<NAME> <NAME>{\'{e}} <NAME>},
doi = {10.1103/PhysRevLett.108.205505},
file = {:home/maxhutch/Documents/Mendeley Desktop/Amsler et al. - 2012 - Novel Structural Motifs in Low Energy Phases of LiAlH{\_}{\{}4{\}}.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {may},
number = {20},
pages = {1--5},
title = {{Novel Structural Motifs in Low Energy Phases of LiAlH{\_}{\{}4{\}}}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.108.205505},
volume = {108},
year = {2012}
}
@techreport{Wheeler2011,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Wheeler - 2011 - Calxeda Spins 4W Server-on-a-Chip.pdf:pdf},
number = {November},
title = {{Calxeda Spins 4W Server-on-a-Chip}},
year = {2011}
}
@article{Goldberg1991,
author = {<NAME>},
doi = {10.1145/103162.103163},
file = {:home/maxhutch/Documents/Mendeley Desktop/Goldberg - 1991 - What every computer scientist should know about floating-point arithmetic.pdf:pdf},
issn = {03600300},
journal = {ACM Computing Surveys},
month = {mar},
number = {1},
pages = {5--48},
title = {{What every computer scientist should know about floating-point arithmetic}},
url = {http://portal.acm.org/citation.cfm?doid=103162.103163},
volume = {23},
year = {1991}
}
@techreport{Langmead2009a,
author = {<NAME>},
booktitle = {Nature},
file = {:home/maxhutch/Documents/Mendeley Desktop/Langmead - 2009 - Highly Scalable Short Read Alignment with the Burrows-Wheeler Transform and Cloud Computing.pdf:pdf},
title = {{Highly Scalable Short Read Alignment with the Burrows-Wheeler Transform and Cloud Computing}},
url = {http://drum.lib.umd.edu/handle/1903/9458},
year = {2009}
}
@article{Paier2006,
abstract = {Hybrid Fock exchange/density functional theory functionals have shown to be very successful in describing a wide range of molecular properties. For periodic systems, however, the long-range nature of the Fock exchange interaction and the resultant large computational requirements present a major drawback. This is especially true for metallic systems, which require a dense Brillouin zone sampling. Recently, a new hybrid functional [HSE03, <NAME>, <NAME>, and <NAME>, J. Chem. Phys. 118, 8207 (2003)] that addresses this problem within the context of methods that evaluate the Fock exchange in real space was introduced. We discuss the advantages the HSE03 functional brings to methods that rely on a reciprocal space description of the Fock exchange interaction, e.g., all methods that use plane wave basis sets. Furthermore, we present a detailed comparison of the performance of the HSE03 and PBE0 functionals for a set of archetypical solid state systems by calculating lattice parameters, bulk moduli, heats of formation, and band gaps. The results indicate that the hybrid functionals indeed often improve the description of these properties, but in several cases the results are not yet on par with standard gradient corrected functionals. This concerns in particular metallic systems for which the bandwidth and exchange splitting are seriously overestimated.},
author = {<NAME> Marsman, <NAME>, <NAME>, <NAME> Gerber, <NAME>{\'{a}}n, <NAME>},
doi = {10.1063/1.2187006},
file = {:home/maxhutch/Documents/Mendeley Desktop/Paier et al. - 2006 - Screened hybrid density functionals applied to solids.pdf:pdf},
issn = {0021-9606},
journal = {The Journal of chemical physics},
month = {apr},
number = {15},
pages = {154709},
pmid = {16674253},
title = {{Screened hybrid density functionals applied to solids.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/16674253},
volume = {124},
year = {2006}
}
@article{Low2012,
author = {<NAME> and <NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Low, <NAME> - 2012 - Distributed GraphLab A framework for machine learning and data mining in the cloud.pdf:pdf},
journal = {Proceedings of the {\ldots}},
pages = {716--727},
title = {{Distributed GraphLab: A framework for machine learning and data mining in the cloud}},
url = {http://dl.acm.org/citation.cfm?id=2212354},
year = {2012}
}
@article{Dest00,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Destainville - 2000 - Two-dimensional random tilings of large codimension new progress.pdf:pdf},
issn = {09215093},
journal = {Materials Science and Engineering A},
keywords = {entropy,mean-field theory,two-dimensional random tilings},
month = {dec},
number = {1-2},
pages = {409--412},
title = {{Two-dimensional random tilings of large codimension: new progress}},
volume = {294-296},
year = {2000}
}
@book{Hardy1979,
author = {<NAME>.},
publisher = {Clarendon press Oxford},
title = {{An introduction to the theory of numbers}},
url = {http://www.ams.org/bull/1929-35-06/S0002-9904-1929-04793-1/S0002-9904-1929-04793-1.pdf},
volume = {6},
year = {1979}
}
@article{Umari2009,
author = {<NAME>. and <NAME>},
doi = {10.1103/PhysRevB.79.201104},
file = {:home/maxhutch/Documents/Mendeley Desktop/Umari, Stenuit, Baroni - 2009 - Optimal representation of the polarization propagator for large-scale GW calculations.pdf:pdf},
issn = {1098-0121},
journal = {Physical Review B},
month = {may},
number = {20},
pages = {7--10},
title = {{Optimal representation of the polarization propagator for large-scale GW calculations}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.79.201104},
volume = {79},
year = {2009}
}
@article{Sutner1997,
author = {<NAME>},
doi = {10.1016/S0167-8191(97)00080-X},
file = {:home/maxhutch/Documents/Mendeley Desktop/Sutner - 1997 - Linear cellular automata and Fischer automata.pdf:pdf},
issn = {01678191},
journal = {Parallel Computing},
keywords = {cellular automata,minimal automata,permutation automata},
month = {nov},
number = {11},
pages = {1613--1634},
title = {{Linear cellular automata and Fischer automata}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S016781919700080X},
volume = {23},
year = {1997}
}
@article{Hellerstein2007,
author = {Hellerstein, Joesph},
doi = {10.1561/1900000002},
file = {:home/maxhutch/Documents/Mendeley Desktop/Hellerstein - 2007 - Architecture of a Database System.pdf:pdf},
issn = {1931-7883},
journal = {Foundations and Trends in Databases},
month = {nov},
number = {2},
pages = {141--259},
title = {{Architecture of a Database System}},
url = {http://www.nowpublishers.com/product.aspx?product=DBS{\&}doi=1900000002},
volume = {1},
year = {2007}
}
@article{Grebogi1985,
author = {Grebogi, Celso and McDonald, SW and Ott, Edward and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Grebogi et al. - 1985 - Exterior dimension of fat fractals.pdf:pdf},
journal = {Physics Letters A},
number = {1},
pages = {1--4},
title = {{Exterior dimension of fat fractals}},
url = {http://www.sciencedirect.com/science/article/pii/0375960185902208},
volume = {1},
year = {1985}
}
@article{Cherfils1999,
author = {<NAME>.},
doi = {10.1103/PhysRevLett.83.5507},
file = {:home/maxhutch/Documents/Mendeley Desktop/Cherfils et al. - 1999 - Convergent Rayleigh-Taylor Experiments on the Nova Laser.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {dec},
number = {26},
pages = {5507--5510},
title = {{Convergent Rayleigh-Taylor Experiments on the Nova Laser}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.83.5507},
volume = {83},
year = {1999}
}
@article{Shim2012,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Shim - 2012 - The CAP Theorem's Growing Impact.pdf:pdf},
journal = {Computer},
number = {February},
pages = {21--23},
title = {{The CAP Theorem's Growing Impact}},
url = {http://doi.ieeecomputersociety.org/10.1109/MC.2012.54},
year = {2012}
}
@misc{TheMendeleySupportTeam2011a,
abstract = {A quick introduction to Mendeley. Learn how Mendeley creates your personal digital library, how to organize and annotate documents, how to collaborate and share with colleagues, and how to generate citations and bibliographies.},
address = {London},
author = {{The Mendeley Support Team}},
booktitle = {Mendeley Desktop},
file = {:home/maxhutch/Documents/Mendeley Desktop//The Mendeley Support Team - 2011 - Getting Started with Mendeley(2).pdf:pdf},
keywords = {Mendeley,how-to,user manual},
pages = {1--16},
publisher = {Mendeley Ltd.},
title = {{Getting Started with Mendeley}},
url = {http://www.mendeley.com},
year = {2011}
}
@article{Levine1984,
author = {<NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Levine, Steinhardt - 1984 - Quasicrystals a new class of ordered structures.pdf:pdf},
journal = {Physical review letters},
number = {26},
pages = {2477--2480},
title = {{Quasicrystals: a new class of ordered structures}},
volume = {53},
year = {1984}
}
@book{Axler1997,
author = {<NAME>.},
booktitle = {Dimension Contemporary German Arts And Letters},
file = {:home/maxhutch/Documents/Mendeley Desktop/Axler - 1997 - Linear algebra done right.pdf:pdf},
publisher = {Springer Verlag},
title = {{Linear algebra done right}},
url = {http://books.google.com/books?hl=en{\&}lr={\&}id=ovIYVIlithQC{\&}oi=fnd{\&}pg=PR9{\&}dq=Linear+Algebra+Done+Right{\&}ots=BWS{\_}p98j06{\&}sig=tOTv0V4DBbD4ZLFPIm-yDYKJRho},
year = {1997}
}
@book{Einstein2005,
author = {<NAME> <NAME> <NAME> <NAME>.},
booktitle = {The Philosophical Review},
doi = {10.2307/2179316},
file = {:home/maxhutch/Documents/Mendeley Desktop/Einstein et al. - 2005 - Relativity The special and general theory.pdf:pdf},
isbn = {0131862618},
issn = {00318108},
month = {mar},
number = {2},
pages = {213},
publisher = {Pi Pr},
title = {{Relativity: The special and general theory}},
url = {http://books.google.com/books?hl=en{\&}lr={\&}id=jyWudNPdceoC{\&}oi=fnd{\&}pg=PR9{\&}dq=Relativity:+The+Special+and+General+Theory{\&}ots=8lc{\_}qsRW9Y{\&}sig=oVWLy4xyVh6etDPOSvYsQJ17uSo},
volume = {30},
year = {2005}
}
@inproceedings{Jaynes1989,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Jaynes - 1989 - Clearing up mysteries - the original goal.pdf:pdf},
pages = {1--27},
title = {{Clearing up mysteries - the original goal}},
year = {1989}
}
@article{Suarez2010,
author = {Su{\'{<NAME> Tyler, <NAME>. and Childress, <NAME>.},
doi = {10.1016/j.ijheatmasstransfer.2010.01.017},
file = {:home/maxhutch/Documents/Mendeley Desktop/Su{\'{a}}rez, <NAME> - 2010 - A fully coupled, transient double-diffusive convective model for salt-gradient solar ponds.pdf:pdf},
issn = {00179310},
journal = {International Journal of Heat and Mass Transfer},
month = {apr},
number = {9-10},
pages = {1718--1730},
title = {{A fully coupled, transient double-diffusive convective model for salt-gradient solar ponds}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0017931010000189},
volume = {53},
year = {2010}
}
@article{Si2012,
archivePrefix = {arXiv},
arxivId = {arXiv:1202.4155v1},
author = {<NAME> and <NAME> and <NAME>},
eprint = {arXiv:1202.4155v1},
file = {:home/maxhutch/Documents/Mendeley Desktop/Si, Haute, Zhang - 2012 - Hot spin spots in the laser-induced demagnetization.pdf:pdf},
pages = {1--10},
title = {{Hot spin spots in the laser-induced demagnetization}},
volume = {1},
year = {2012}
}
@book{Demmel1997,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Demmel - 1997 - Applied numerical linear algebra.pdf:pdf},
title = {{Applied numerical linear algebra}},
url = {http://books.google.com/books?hl=en{\&}lr={\&}id=lr8cFi-YWnIC{\&}oi=fnd{\&}pg=PR9{\&}dq=Applied+Numerical+Linear+Algebra{\&}ots=N6QRiTgRIM{\&}sig=gXAdUCWOp-ZpH2BHk2XD3i67l4E},
year = {1997}
}
@article{Oresta2009,
author = {<NAME> <NAME>},
doi = {10.1103/PhysRevE.80.026304},
file = {:home/maxhutch/Documents/Mendeley Desktop/Oresta et al. - 2009 - Heat transfer mechanisms in bubbly Rayleigh-B{\'{e}}nard convection.pdf:pdf},
issn = {1539-3755},
journal = {Physical Review E},
month = {aug},
number = {2},
pages = {1--11},
title = {{Heat transfer mechanisms in bubbly Rayleigh-B{\'{e}}nard convection}},
url = {http://link.aps.org/doi/10.1103/PhysRevE.80.026304},
volume = {80},
year = {2009}
}
@article{Gantz2011,
author = {<NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/<NAME> - 2011 - Extracting value from chaos.pdf:pdf},
journal = {IDC iView},
number = {June},
pages = {1--12},
title = {{Extracting value from chaos}},
url = {http://www.itu.dk/people/rkva/2011-Fall-SMA/readings/ExtractingValuefromChaos.pdf},
year = {2011}
}
@article{Rappe1990,
author = {<NAME>. and <NAME>. and <NAME>. and <NAME>.},
file = {:tmp/PhysRevB.41.1227.pdf:pdf},
issn = {0163-1829},
journal = {Physical Review B},
month = {jan},
number = {2},
pages = {1227--1230},
pmid = {9993827},
title = {{Optimized pseudopotentials}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/10006559 http://prb.aps.org/abstract/PRB/v41/i2/p1227{\_}1},
volume = {41},
year = {1990}
}
@article{Ganz2008,
author = {<NAME>, <NAME> <NAME> <NAME>, <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Gantz et al. - 2008 - The diverse and exploding digital universe.pdf:pdf},
journal = {International Data Group {\ldots}},
title = {{The diverse and exploding digital universe}},
url = {http://scholar.google.com/scholar?hl=en{\&}btnG=Search{\&}q=intitle:The+Diverse+and+Exploding+Digital+Universe{\#}2},
year = {2008}
}
@article{0305-4470-31-29-005,
abstract = {The tilings of rhombi in two dimensions and of rhomboedra in three dimensions are studied when they are constrained by fixed boundary conditions. We establish a link between those conditions and free or periodic boundary ones: the entropy is written as a functional integral which is treated via a saddle-point method. We can exhibit the dominant states of the statistical ensemble of tilings and show that they can display a strong structural inhomogeneity caused by the boundary. This inhomogeneity is responsible for a difference of entropy between the studied fixed boundary tilings and free boundary ones. This method uses a representation of tilings by membranes embedded in a higher-dimensional hypercubic lattice. It is illustrated in the case of 60 degree rhombus tilings.},
author = {<NAME>},
journal = {Journal of Physics A: Mathematical and General},
number = {29},
pages = {6123},
title = {{Entropy and boundary conditions in random rhombus tilings}},
url = {http://stacks.iop.org/0305-4470/31/i=29/a=005},
volume = {31},
year = {1998}
}
@article{Sneddon2010,
abstract = {Managing the overwhelming numbers of molecular states and interactions is a fundamental obstacle to building predictive models of biological systems. Here we introduce the Network-Free Stochastic Simulator (NFsim), a general-purpose modeling platform that overcomes the combinatorial nature of molecular interactions. Unlike standard simulators that represent molecular species as variables in equations, NFsim uses a biologically intuitive representation: objects with binding and modification sites acted on by reaction rules. During simulations, rules operate directly on molecular objects to produce exact stochastic results with performance that scales independently of the reaction network size. Reaction rates can be defined as arbitrary functions of molecular states to provide powerful coarse-graining capabilities, for example to merge Boolean and kinetic representations of biological networks. NFsim enables researchers to simulate many biological systems that were previously inaccessible to general-purpose software, as we illustrate with models of immune system signaling, microbial signaling, cytoskeletal assembly and oscillating gene expression.},
author = {Sneddon, <NAME> and Faeder, <NAME> and Emonet, Thierry},
doi = {10.1038/nmeth.1546},
file = {:home/maxhutch/Documents/Mendeley Desktop/Sneddon, Faeder, Emonet - 2010 - Efficient modeling, simulation and coarse-graining of biological complexity with NFsim.pdf:pdf},
issn = {1548-7105},
journal = {Nature methods},
month = {dec},
number = {2},
pmid = {21186362},
title = {{Efficient modeling, simulation and coarse-graining of biological complexity with NFsim.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/21186362},
volume = {8},
year = {2010}
}
@article{Smakula1955,
author = {<NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/Smakula - 1955 - Precision determination of lattice constants with a Geiger-counter X-ray diffractometer.pdf:pdf},
journal = {Physical Review},
number = {6},
pages = {1737},
publisher = {APS},
title = {{Precision determination of lattice constants with a Geiger-counter X-ray diffractometer}},
url = {http://prola.aps.org/abstract/PR/v99/i6/p1737{\_}1},
volume = {99},
year = {1955}
}
@article{Bui-Thanh2007,
author = {<NAME> <NAME> <NAME>. and {<NAME>}, B.},
doi = {10.1016/j.jcp.2006.10.026},
file = {:home/maxhutch/Documents/Mendeley Desktop/Bui-Thanh et al. - 2007 - Goal-oriented, model-constrained optimization for reduction of large-scale systems.pdf:pdf},
issn = {00219991},
journal = {Journal of Computational Physics},
keywords = {model reduction,optimization,partial differential equations},
month = {jun},
number = {2},
pages = {880--896},
title = {{Goal-oriented, model-constrained optimization for reduction of large-scale systems}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0021999106005535},
volume = {224},
year = {2007}
}
@article{Burkardt2003,
author = {<NAME> <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Burkardt, Du, Gunzburger - 2003 - Reduced order modeling of complex systems.pdf:pdf},
pages = {29--38},
title = {{Reduced order modeling of complex systems}},
year = {2003}
}
@article{Marzari1997,
author = {<NAME> and Vanderbilt, David},
doi = {10.1103/PhysRevB.56.12847},
file = {:home/maxhutch/Documents/Mendeley Desktop/Marzari, Vanderbilt - 1997 - Maximally localized generalized Wannier functions for composite energy bands.pdf:pdf},
issn = {0163-1829},
journal = {Physical Review B},
month = {nov},
number = {20},
pages = {12847--12865},
title = {{Maximally localized generalized Wannier functions for composite energy bands}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.56.12847},
volume = {56},
year = {1997}
}
@article{Chang2008,
author = {<NAME> and <NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Chang, Dean, Ghemawat - 2008 - Bigtable A distributed storage system for structured data.pdf:pdf},
journal = {ACM Transactions on {\ldots}},
pages = {205--218},
title = {{Bigtable: A distributed storage system for structured data}},
url = {http://dl.acm.org/citation.cfm?id=1365816},
year = {2008}
}
@article{Payne1992,
author = {<NAME> and <NAME> and <NAME>},
doi = {10.1103/RevModPhys.64.1045},
file = {:home/maxhutch/Documents/Mendeley Desktop/<NAME> - 1992 - Iterative minimization techniques for ab initio total-energy calculations molecular dynamics and conjugate.pdf:pdf},
issn = {0034-6861},
journal = {Reviews of Modern Physics},
month = {oct},
number = {4},
pages = {1045--1097},
title = {{Iterative minimization techniques for ab initio total-energy calculations: molecular dynamics and conjugate gradients}},
url = {http://link.aps.org/doi/10.1103/RevModPhys.64.1045 ftp://orthodox-hub.ru/books/{\_}������{\_}����������/RevModPhys/RevModPhys 1984-2008/root/data/RevModPhys 1984-2008/pdf/RMP/v064/RMP{\_}v064{\_}p1045.pdf},
volume = {64},
year = {1992}
}
@article{Wittmann2011,
abstract = {We present a simple, parallel and distributed algorithm for setting up and partitioning a sparse representation of a regular discretized simulation domain. This method is scalable for a large number of processes even for complex geometries and ensures load balance between the domains, reasonable communication interfaces, and good data locality within the domain. Applying this scheme to a list-based lattice Boltzmann flow solver can achieve similar or even higher flow solver performance than widely used standard graph partition based tools such as METIS and PT-SCOTCH.},
archivePrefix = {arXiv},
arxivId = {1111.1129},
author = {Wittmann, <NAME> Zeiser, <NAME>, <NAME> <NAME>},
eprint = {1111.1129},
month = {nov},
title = {{Domain decomposition and locality optimization for large-scale lattice Boltzmann simulations}},
url = {http://arxiv.org/abs/1111.1129},
year = {2011}
}
@article{Homescu2005,
author = {Homescu, <NAME> Petzold, LR and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Homescu, Petzold, Serban - 2005 - Error estimation for reduced-order models of dynamical systems.pdf:pdf},
journal = {SIAM Journal on Numerical Analysis},
keywords = {040603541,10,1137,65l10,65l99,adjoint method,ams subject classifications,doi,model reduction,proper orthogonal decomposition,small sample statistical condi-,tion estimation},
number = {4},
pages = {1693--1714},
title = {{Error estimation for reduced-order models of dynamical systems}},
url = {http://epubs.siam.org/doi/abs/10.1137/040603541},
volume = {43},
year = {2005}
}
@article{Kalugin1994,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Kalugin - 1994 - The square-triangle random-tiling model in the thermodynamic limit.pdf:pdf},
journal = {Journal of Physics A: Mathematical and General},
title = {{The square-triangle random-tiling model in the thermodynamic limit}},
volume = {3599},
year = {1994}
}
@article{Shirley1996,
author = {<NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/Shirley - 1996 - Optimal basis sets for detailed Brillouin-zone integrations.pdf:pdf},
journal = {Physical Review B},
number = {23},
pages = {464--469},
title = {{Optimal basis sets for detailed Brillouin-zone integrations}},
url = {http://prb.aps.org/abstract/PRB/v54/i23/p16464{\_}1},
volume = {54},
year = {1996}
}
@article{Hutchinson2012,
author = {<NAME>. and <NAME>.},
doi = {10.1016/j.cpc.2012.02.017},
file = {:home/maxhutch/Documents/Mendeley Desktop/Hutchinson, Widom - 2012 - VASP on a GPU Application to exact-exchange calculations of the stability of elemental boron.pdf:pdf},
issn = {00104655},
journal = {Computer Physics Communications},
month = {feb},
pages = {1--5},
publisher = {Elsevier B.V.},
title = {{VASP on a GPU: Application to exact-exchange calculations of the stability of elemental boron}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0010465512000707},
volume = {1},
year = {2012}
}
@article{Bell2008,
author = {<NAME> and Day, MS},
file = {:home/maxhutch/Documents/Mendeley Desktop//Bell, Day - 2004 - Direct numerical simulations of type ia supernovae flames. II. The Rayleigh-Taylor instability.pdf:pdf},
journal = {The Astrophysical {\ldots}},
number = {1993},
pages = {883--906},
title = {{Direct numerical simulations of type ia supernovae flames. II. The Rayleigh-Taylor instability}},
url = {http://iopscience.iop.org/0004-637X/608/2/883},
year = {2004}
}
@article{Ramakrishnan2012,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Ramakrishnan - 2012 - CAP and cloud data management.pdf:pdf},
journal = {Computer},
number = {February},
pages = {43--49},
title = {{CAP and cloud data management}},
url = {http://ieeexplore.ieee.org/xpls/abs{\_}all.jsp?arnumber=6122007},
year = {2012}
}
@article{Mishra2007,
author = {<NAME>. and <NAME>.},
doi = {10.1016/j.jcp.2006.08.021},
file = {:home/maxhutch/Documents/Mendeley Desktop/Mishra, Roy - 2007 - Solving transient conduction and radiation heat transfer problems using the lattice Boltzmann method and the finite.pdf:pdf},
issn = {00219991},
journal = {Journal of Computational Physics},
keywords = {conduction,finite volume method,lattice boltzmann method,participating medium,radiation,radiative heat transfer},
month = {apr},
number = {1},
pages = {89--107},
title = {{Solving transient conduction and radiation heat transfer problems using the lattice Boltzmann method and the finite volume method}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0021999106004268},
volume = {223},
year = {2007}
}
@article{Huang2012,
author = {<NAME> and <NAME> and <NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Huang et al. - 2012 - Erasure coding in windows azure storage.pdf:pdf},
journal = {USENIX conference on {\ldots}},
title = {{Erasure coding in windows azure storage}},
url = {https://www.usenix.org/system/files/conference/atc12/atc12-final181{\_}0.pdf},
year = {2012}
}
@article{Becke1993,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Becke - 1993 - A new mixing of Hartree–Fock and local density‐functional theories.pdf:pdf},
journal = {The Journal of Chemical Physics},
number = {January},
title = {{A new mixing of Hartree–Fock and local density‐functional theories}},
url = {http://link.aip.org/link/?JCPSA6/98/1372/1},
volume = {6},
year = {1993}
}
@article{Umari2010,
author = {<NAME> <NAME> <NAME>},
doi = {10.1103/PhysRevB.81.115104},
file = {:home/maxhutch/Documents/Mendeley Desktop/Umari, Stenuit, Baroni - 2010 - GW quasiparticle spectra from occupied states only.pdf:pdf},
issn = {1098-0121},
journal = {Physical Review B},
month = {mar},
number = {11},
pages = {115104},
title = {{GW quasiparticle spectra from occupied states only}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.81.115104},
volume = {81},
year = {2010}
}
@article{Epureanu2003,
author = {<NAME>.},
doi = {10.1016/S0889-9746(03)00044-6},
file = {:home/maxhutch/Documents/Mendeley Desktop/Epureanu - 2003 - A parametric analysis of reduced order models of viscous flows in turbomachinery.pdf:pdf},
isbn = {1734647639},
issn = {08899746},
journal = {Journal of Fluids and Structures},
month = {jun},
number = {7},
pages = {971--982},
title = {{A parametric analysis of reduced order models of viscous flows in turbomachinery}},
volume = {17},
year = {2003}
}
@article{Ma2002,
abstract = {Genomics and proteomics studies routinely depend on homology searches based on the strategy of finding short seed matches which are then extended. The exploding genomic data growth presents a dilemma for DNA homology search techniques: increasing seed size decreases sensitivity whereas decreasing seed size slows down computation.},
author = {<NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/<NAME> - 2002 - PatternHunter faster and more sensitive homology search.pdf:pdf},
isbn = {1101001100},
issn = {1367-4803},
journal = {Bioinformatics (Oxford, England)},
keywords = {Algorithms,Base Sequence,DNA,DNA: genetics,Databases, Nucleic Acid,Genome,Models, Statistical,Molecular Sequence Data,National Library of Medicine (U.S.),Quality Control,Sensitivity and Specificity,Sequence Alignment,Sequence Alignment: methods,Sequence Alignment: statistics {\&} numerical data,Sequence Homology,Software,Time Factors,United States},
month = {mar},
number = {3},
pages = {440--5},
pmid = {11934743},
title = {{PatternHunter: faster and more sensitive homology search.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/11934743},
volume = {18},
year = {2002}
}
@article{Hanson1997,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Hanson - 1997 - Computational mechanics of cellular automata An example.pdf:pdf},
journal = {Physica D: Nonlinear Phenomena},
title = {{Computational mechanics of cellular automata: An example}},
url = {http://www.sciencedirect.com/science/article/pii/S016727899600259X},
year = {1997}
}
@article{Kolmogorov2010,
author = {<NAME>. and <NAME> <NAME> <NAME>. and <NAME>. and <NAME>.},
doi = {10.1103/PhysRevLett.105.217003},
file = {:home/maxhutch/Documents/Mendeley Desktop/Kolmogorov et al. - 2010 - New Superconducting and Semiconducting Fe-B Compounds Predicted with an Ab Initio Evolutionary Search.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {nov},
number = {21},
pages = {1--4},
title = {{New Superconducting and Semiconducting Fe-B Compounds Predicted with an Ab Initio Evolutionary Search}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.105.217003},
volume = {105},
year = {2010}
}
@article{Li2009,
abstract = {The enormous amount of short reads generated by the new DNA sequencing technologies call for the development of fast and accurate read alignment programs. A first generation of hash table-based methods has been developed, including MAQ, which is accurate, feature rich and fast enough to align short reads from a single individual. However, MAQ does not support gapped alignment for single-end reads, which makes it unsuitable for alignment of longer reads where indels may occur frequently. The speed of MAQ is also a concern when the alignment is scaled up to the resequencing of hundreds of individuals.},
author = {<NAME> and <NAME>},
doi = {10.1093/bioinformatics/btp324},
file = {:home/maxhutch/Documents/Mendeley Desktop/Li, Durbin - 2009 - Fast and accurate short read alignment with Burrows-Wheeler transform.pdf:pdf},
issn = {1367-4811},
journal = {Bioinformatics (Oxford, England)},
keywords = {Algorithms,Genomics,Genomics: methods,Sequence Alignment,Sequence Alignment: methods,Sequence Analysis, DNA,Sequence Analysis, DNA: methods,Software},
month = {jul},
number = {14},
pages = {1754--60},
pmid = {19451168},
title = {{Fast and accurate short read alignment with Burrows-Wheeler transform.}},
url = {http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2705234{\&}tool=pmcentrez{\&}rendertype=abstract},
volume = {25},
year = {2009}
}
@article{Brewer2012,
author = {Brewer, <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Brewer - 2012 - CAP Twelve Years Later How the Rules Have Changed.pdf:pdf},
number = {February},
pages = {23--29},
title = {{CAP Twelve Years Later: How the "Rules" Have Changed}},
year = {2012}
}
@article{Santos2008,
author = {<NAME> <NAME>. and <NAME>. and {<NAME>}, J. and <NAME>. and {<NAME>}, A. and S{\'{a}}<NAME>.},
doi = {10.1103/PhysRevB.78.195420},
file = {:home/maxhutch/Documents/Mendeley Desktop/Santos et al. - 2008 - Switching on magnetism in Ni-doped graphene Density functional calculations.pdf:pdf},
issn = {1098-0121},
journal = {Physical Review B},
month = {nov},
number = {19},
pages = {195420},
title = {{Switching on magnetism in Ni-doped graphene: Density functional calculations}},
url = {http://prb.aps.org.proxy.uchicago.edu/abstract/PRB/v78/i19/e195420},
volume = {78},
year = {2008}
}
@book{Kittel1953,
address = {New York},
author = {<NAME>},
publisher = {<NAME>},
title = {{Introduction to Solid State Physics}},
year = {1953}
}
@article{Lucia2004,
author = {<NAME>. and <NAME>. and <NAME>.},
doi = {10.1016/j.paerosci.2003.12.001},
file = {:home/maxhutch/Documents/Mendeley Desktop/Lucia, <NAME> - 2004 - Reduced-order modeling new approaches for computational physics.pdf:pdf},
issn = {03760421},
journal = {Progress in Aerospace Sciences},
keywords = {galerkin projection,harmonic balance,proper orthogonal decomposition,reduced-order modeling,volterra series},
month = {feb},
number = {1-2},
pages = {51--117},
title = {{Reduced-order modeling: new approaches for computational physics}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0376042103001131},
volume = {40},
year = {2004}
}
@article{Appl1994,
author = {Fischer, <NAME> R{\o}nquist, EM},
file = {:home/maxhutch/Documents/Mendeley Desktop/Fischer, R{\o}nquist - 1994 - Spectral element methods for large scale parallel Navier—Stokes calculations.pdf:pdf},
journal = {Computer methods in applied mechanics and {\ldots}},
number = {93},
title = {{Spectral element methods for large scale parallel Navier—Stokes calculations}},
url = {http://www.sciencedirect.com/science/article/pii/S004578259480009X},
volume = {7825},
year = {1994}
}
@article{Callen,
author = {<NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/Callen - Unknown - Thermodynamics and an Introduction to Thermostatistics.pdf:pdf},
journal = {2nd. ed.(<NAME> and Sons, New Yok, 1985)},
title = {{Thermodynamics and an Introduction to Thermostatistics}},
url = {http://keszei.chem.elte.hu/1.felev/2004/CallenMain.htm}
}
@misc{TheMendeleySupportTeam2011,
abstract = {A quick introduction to Mendeley. Learn how Mendeley creates your personal digital library, how to organize and annotate documents, how to collaborate and share with colleagues, and how to generate citations and bibliographies.},
address = {London},
author = {{The Mendeley Support Team}},
booktitle = {Mendeley Desktop},
file = {:home/maxhutch/Documents/Mendeley Desktop//The Mendeley Support Team - 2011 - Getting Started with Mendeley(2).pdf:pdf},
keywords = {Mendeley,how-to,user manual},
pages = {1--16},
publisher = {Mendeley Ltd.},
title = {{Getting Started with Mendeley}},
url = {http://www.mendeley.com},
year = {2011}
}
@article{Soler2002,
author = {<NAME> Garc, Alberto and Junquera, <NAME>, Pablo and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Soler et al. - 2002 - The SIESTA method for ab initio order- N materials.pdf:pdf},
journal = {Journal of physics. Condensed matter : an Institute of Physics journal},
title = {{The SIESTA method for ab initio order- N materials}},
volume = {2745},
year = {2002}
}
@article{Carlberg2011a,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Carlberg, Farhat - 2011 - A low‐cost, goal‐oriented 'compact proper orthogonal decomposition' basis for model reduction of static sy.pdf:pdf},
journal = {International Journal for Numerical {\ldots}},
keywords = {goal-oriented,model reduction,proper orthogonal decomposition,sensitivity analysis},
pages = {1--25},
title = {{A low‐cost, goal‐oriented 'compact proper orthogonal decomposition' basis for model reduction of static systems}},
url = {http://onlinelibrary.wiley.com/doi/10.1002/nme.3074/full},
year = {2011}
}
@article{Poplawski2010,
abstract = {We propose a simple scenario which explains why our Universe appears spatially flat, homogeneous and isotropic. We use the Einstein-Cartan-Kibble-Sciama (ECKS) theory of gravity which naturally extends general relativity to include the spin of matter. The torsion of spacetime generates gravitational repulsion in the early Universe filled with quarks and leptons, preventing the cosmological singularity: the Universe expands from a state of minimum but finite radius. We show that the dynamics of the closed Universe immediately after this state naturally solves the flatness and horizon problems in cosmology because of an extremely small and negative torsion density parameter, {\$}\backslashOmega{\_}S \backslashapprox -10{\^{}}{\{}-69{\}}{\$}. Thus the ECKS gravity provides a compelling alternative to speculative mechanisms of standard cosmic inflation. This scenario also suggests that the contraction of our Universe preceding the bounce at the minimum radius may correspond to the dynamics of matter inside a collapsing black hole existing in another universe, which could explain the origin of the Big Bang.},
archivePrefix = {arXiv},
arxivId = {1007.0587},
author = {Poplawski, <NAME>.},
doi = {10.1016/j.physletb.2010.09.056},
eprint = {1007.0587},
issn = {0370-2693},
journal = {Physics Letters B},
keywords = {Cosmology and Extragalactic Astrophysics,General Relativity and Quantum Cosmology,High Energy Physics - Theory},
month = {jul},
pages = {8},
publisher = {Elsevier},
title = {{Cosmology with torsion: An alternative to cosmic inflation}},
url = {http://arxiv.org/abs/1007.0587},
year = {2010}
}
@inproceedings{Orchard2010,
author = {Orchard, DA and Bolingbroke, Max and Mycroft, Alan},
booktitle = {DAMP},
file = {:home/maxhutch/Documents/Mendeley Desktop/Orchard, Bolingbroke, Mycroft - 2010 - Ypnos declarative, parallel structured grid programming.pdf:pdf},
isbn = {9781605588599},
title = {{Ypnos: declarative, parallel structured grid programming}},
url = {http://dl.acm.org/citation.cfm?id=1708053},
year = {2010}
}
@article{Peng2010,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Peng, Dabek - 2010 - Large-scale incremental processing using distributed transactions and notifications.pdf:pdf},
journal = {Proceedings of the 9th USENIX conference on {\ldots}},
title = {{Large-scale incremental processing using distributed transactions and notifications}},
url = {http://www.usenix.org/event/osdi10/tech/full{\_}papers/Peng.pdf},
year = {2010}
}
@article{Wulf1981,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Wulf - 1981 - Compilers and Computer Architecture.pdf:pdf},
journal = {IEEE},
number = {July},
pages = {41--47},
title = {{Compilers and Computer Architecture}},
year = {1981}
}
@article{Malko2012,
author = {<NAME>, <NAME> Vi{\~{n}}es, <NAME> G{\"{o}}rling, Andreas},
doi = {10.1103/PhysRevLett.108.086804},
file = {:home/maxhutch/Documents/Mendeley Desktop/Malko et al. - 2012 - Competition for Graphene Graphynes with Direction-Dependent Dirac Cones.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {feb},
number = {8},
pages = {1--4},
title = {{Competition for Graphene: Graphynes with Direction-Dependent Dirac Cones}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.108.086804},
volume = {108},
year = {2012}
}
@article{Heid2010,
author = {<NAME> <NAME> <NAME>.},
doi = {10.1103/PhysRevB.81.174527},
file = {:home/maxhutch/Documents/Mendeley Desktop/Heid, Bohnen, Chulkov - 2010 - Effect of spin-orbit coupling on the electron-phonon interaction of the superconductors Pb and Tl.pdf:pdf},
issn = {1098-0121},
journal = {Physical Review B},
month = {may},
number = {17},
pages = {1--6},
title = {{Effect of spin-orbit coupling on the electron-phonon interaction of the superconductors Pb and Tl}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.81.174527},
volume = {81},
year = {2010}
}
@article{Ofer1996,
author = {<NAME> <NAME> <NAME> McCrory, RL and Verdon, CP},
file = {:home/maxhutch/Documents/Mendeley Desktop//Ofer et al. - 1996 - Modal model for the nonlinear multimode Rayleigh–Taylor instability.pdf:pdf},
journal = {Physics of Plasmas},
number = {May 2013},
title = {{Modal model for the nonlinear multimode Rayleigh–Taylor instability}},
url = {http://link.aip.org/link/?PHPAEN/3/3073/1},
volume = {3},
year = {1996}
}
@article{Cahn1984,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Cahn - 1984 - Semi-simple Lie algebras and their representations.pdf:pdf},
title = {{Semi-simple Lie algebras and their representations}},
url = {http://theory.uchicago.edu/{~}sethi/Teaching/P385-W2011/texall.pdf},
year = {1984}
}
@inproceedings{Widom1998,
author = {<NAME>. and <NAME> <NAME> <NAME>.},
booktitle = {Proceedings of the 6th International Conference on Quasicrystals},
file = {:home/maxhutch/Documents/Mendeley Desktop/Widom et al. - Unknown - Two-dimensional random tilings of large codimension.ps:ps},
publisher = {Citeseer},
title = {{Two-dimensional random tilings of large codimension}},
url = {http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.41.7694{\&}rep=rep1{\&}type=pdf}
}
@article{Chaturantabut2009,
author = {Chaturantabut, <NAME>, <NAME>.},
doi = {10.1109/CDC.2009.5400045},
file = {:home/maxhutch/Documents/Mendeley Desktop/Chaturantabut, Sorensen - 2009 - Discrete Empirical Interpolation for nonlinear model reduction.pdf:pdf},
isbn = {978-1-4244-3871-6},
journal = {Proceedings of the 48h IEEE Conference on Decision and Control (CDC) held jointly with 2009 28th Chinese Control Conference},
month = {dec},
pages = {4316--4321},
publisher = {Ieee},
title = {{Discrete Empirical Interpolation for nonlinear model reduction}},
url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=5400045},
year = {2009}
}
@article{Giustino2007,
author = {<NAME> <NAME>. and <NAME>.},
doi = {10.1103/PhysRevB.76.165108},
file = {:home/maxhutch/Documents/Mendeley Desktop/EPW-code-interpolation-paper-PRB2007.pdf:pdf},
issn = {1098-0121},
journal = {Physical Review B},
month = {oct},
number = {16},
pages = {165108},
title = {{Electron-phonon interaction using Wannier functions}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.76.165108},
volume = {76},
year = {2007}
}
@article{Urban,
author = {<NAME> <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Urban, Volkwein, Zeeb - 2012 - Greedy sampling using nonlinear optimization.pdf:pdf},
keywords = {a-,greedy algorithm,nonlinear optimization,reduced basis method},
title = {{Greedy sampling using nonlinear optimization}},
url = {https://www.uni-ulm.de/fileadmin/website{\_}uni{\_}ulm/mawi.inst.070/urban/papers/UrbanVolkweinZeeb.pdf},
year = {2012}
}
@article{Li2010,
abstract = {Rapidly evolving sequencing technologies produce data on an unparalleled scale. A central challenge to the analysis of this data is sequence alignment, whereby sequence reads must be compared to a reference. A wide variety of alignment algorithms and software have been subsequently developed over the past two years. In this article, we will systematically review the current development of these algorithms and introduce their practical applications on different types of experimental data. We come to the conclusion that short-read alignment is no longer the bottleneck of data analyses. We also consider future development of alignment algorithms with respect to emerging long sequence reads and the prospect of cloud computing.},
author = {<NAME> and <NAME>},
doi = {10.1093/bib/bbq015},
file = {:home/maxhutch/Documents/Mendeley Desktop/Li, Homer - 2010 - A survey of sequence alignment algorithms for next-generation sequencing.pdf:pdf},
isbn = {1111111111},
issn = {1477-4054},
journal = {Briefings in bioinformatics},
keywords = {Algorithms,Base Sequence,Genome, Human,Humans,Sequence Alignment,Sequence Alignment: methods,Sequence Analysis, DNA,Sequence Analysis, DNA: methods,Software},
month = {sep},
number = {5},
pages = {473--83},
pmid = {20460430},
title = {{A survey of sequence alignment algorithms for next-generation sequencing.}},
url = {http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2943993{\&}tool=pmcentrez{\&}rendertype=abstract},
volume = {11},
year = {2010}
}
@article{Tomboulides1989,
author = {Tomboulides, AG and Israeli, M and Karniadakis, GE},
file = {:home/maxhutch/Documents/Mendeley Desktop/Tomboulides, Israeli, Karniadakis - 1989 - Efficient removal of boundary-divergence errors in time-splitting methods.pdf:pdf},
journal = {Journal of scientific computing},
number = {3},
pages = {291--308},
title = {{Efficient removal of boundary-divergence errors in time-splitting methods}},
url = {http://link.springer.com/article/10.1007/BF01061059},
volume = {4},
year = {1989}
}
@book{Landau1960,
author = {<NAME>.},
booktitle = {American Journal of Physics},
doi = {10.1119/1.1986749},
file = {:home/maxhutch/Documents/Mendeley Desktop/Landau - 1960 - Mechanics.pdf:pdf},
number = {7},
pages = {1050},
title = {{Mechanics}},
volume = {40},
year = {1960}
}
@article{Murray2011,
author = {<NAME> and Schwarzkopf, M},
file = {:home/maxhutch/Documents/Mendeley Desktop/Murray, Schwarzkopf - 2011 - CIEL a universal execution engine for distributed data-flow computing.pdf:pdf},
journal = {Proceedings of the {\ldots}},
title = {{CIEL: a universal execution engine for distributed data-flow computing}},
url = {http://static.usenix.org/event/nsdi11/tech/full{\_}papers/Murray.pdf},
year = {2011}
}
@article{Melnik,
author = {Melnik, Sergey and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Melnik, Gubarev, Long - 2010 - Dremel interactive analysis of web-scale datasets.pdf:pdf},
journal = {Proceedings of the {\ldots}},
title = {{Dremel: interactive analysis of web-scale datasets}},
url = {http://dl.acm.org/citation.cfm?id=1920886},
year = {2010}
}
@article{Freilich1982,
author = {<NAME>. and <NAME>.},
doi = {10.2307/2007325},
file = {:home/maxhutch/Documents/Mendeley Desktop/Freilich, Ortiz - 1982 - Numerical Solution of Systems of Ordinary Differential Equations with the Tau Method An Error Analysis.pdf:pdf},
issn = {00255718},
journal = {Mathematics of Computation},
keywords = {1982 american mathematical,and phrases,boundary value problems,collocation methods,initial value problems,simultaneous approximation of functions,systems of ordinary differen-,tau method,tial equations},
month = {oct},
number = {160},
pages = {467},
title = {{Numerical Solution of Systems of Ordinary Differential Equations with the Tau Method: An Error Analysis}},
url = {http://www.jstor.org/stable/2007325?origin=crossref},
volume = {39},
year = {1982}
}
@misc{TheMendeleySupportTeam2011d,
abstract = {A quick introduction to Mendeley. Learn how Mendeley creates your personal digital library, how to organize and annotate documents, how to collaborate and share with colleagues, and how to generate citations and bibliographies.},
address = {London},
author = {{The Mendeley Support Team}},
booktitle = {Mendeley Desktop},
file = {:home/maxhutch/Documents/Mendeley Desktop//The Mendeley Support Team - 2011 - Getting Started with Mendeley(2).pdf:pdf},
keywords = {Mendeley,how-to,user manual},
pages = {1--16},
publisher = {Mendeley Ltd.},
title = {{Getting Started with Mendeley}},
url = {http://www.mendeley.com},
year = {2011}
}
@article{Wang2011,
author = {<NAME> and Ruuth, SJ},
file = {:home/maxhutch/Documents/Mendeley Desktop/Wang, Ruuth - 2011 - Variable step-size implicit-explicit linear multistep methods for time-dependent partial differential equations.pdf:pdf},
keywords = {imex,implicit-explicit,linear multistep methods,variable step-size,zero-stability},
title = {{Variable step-size implicit-explicit linear multistep methods for time-dependent partial differential equations}},
url = {https://www.ideals.illinois.edu/handle/2142/18708},
volume = {61801},
year = {2011}
}
@techreport{Purcell1977,
author = {<NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/Purcell - 1977 - Life at Low Reynolds Number.pdf:pdf},
number = {June 1976},
pages = {3--11},
title = {{Life at Low Reynolds Number}},
volume = {45},
year = {1977}
}
@article{Troullier1991,
author = {<NAME>. and <NAME>$\backslash$'{\{}e{\}} Lu$\backslash$'{\{}i{\}}s},
file = {:home/maxhutch/Documents/Mendeley Desktop/Troullier, Martins - 1991 - Efficient pseudopotentials for plane-wave calculations.pdf:pdf},
journal = {Physical Review B},
number = {3},
title = {{Efficient pseudopotentials for plane-wave calculations}},
url = {http://prb.aps.org/abstract/PRB/v43/i3/p1993{\_}1},
volume = {43},
year = {1991}
}
@article{Page1999,
author = {<NAME> Brin, <NAME> <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Page et al. - 1999 - The PageRank citation ranking bringing order to the web.pdf:pdf},
pages = {1--17},
title = {{The PageRank citation ranking: bringing order to the web.}},
url = {http://ilpubs.stanford.edu:8090/422},
year = {1999}
}
@article{Thusoo2010,
author = {<NAME>, <NAME> <NAME> and <NAME> <NAME>},
doi = {10.1109/ICDE.2010.5447738},
file = {:home/maxhutch/Documents/Mendeley Desktop/Thusoo et al. - 2010 - Hive - a petabyte scale data warehouse using Hadoop.pdf:pdf},
isbn = {978-1-4244-5445-7},
journal = {2010 IEEE 26th International Conference on Data Engineering (ICDE 2010)},
keywords = {[Electronic Manuscript]},
pages = {996--1005},
publisher = {Ieee},
title = {{Hive - a petabyte scale data warehouse using Hadoop}},
url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=5447738},
year = {2010}
}
@book{Arfken1971,
author = {<NAME>.},
booktitle = {American Journal of Physics},
doi = {10.1119/1.1986189},
edition = {6},
file = {:home/maxhutch/Documents/Mendeley Desktop/Arfken - 2005 - Mathematical Methods for Physicists.pdf:pdf},
isbn = {0120598760},
issn = {00029505},
number = {4},
pages = {1182},
title = {{Mathematical Methods for Physicists}},
url = {http://link.aip.org/link/?AJP/39/461/2{\&}Agg=doi},
volume = {39},
year = {2005}
}
@article{Hussein2006,
author = {<NAME>. and <NAME>.},
doi = {10.1016/j.finel.2005.11.002},
file = {:home/maxhutch/Documents/Mendeley Desktop/Hussein, Hulbert - 2006 - Mode-enriched dispersion models of periodic materials within a multiscale mixed finite element framework.pdf:pdf},
issn = {0168874X},
journal = {Finite Elements in Analysis and Design},
keywords = {bloch wave vectors,floquet,high frequency dispersion,mixed finite,mode enrichment,multiscale modeling,periodic media,phononic crystals},
month = {apr},
number = {7},
pages = {602--612},
title = {{Mode-enriched dispersion models of periodic materials within a multiscale mixed finite element framework}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0168874X0500154X},
volume = {42},
year = {2006}
}
@article{Li1990,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Li - 1990 - The structure of the elementary cellular automata rule space.pdf:pdf},
journal = {Complex Systems},
pages = {281--297},
title = {{The structure of the elementary cellular automata rule space}},
url = {http://www.complex-systems.com/pdf/04-3-3.pdf},
volume = {4},
year = {1990}
}
@article{Abdi2010,
author = {<NAME>}} and <NAME>.},
doi = {10.1002/wics.101},
file = {:home/maxhutch/Documents/Mendeley Desktop/Abdi, Williams - 2010 - Principal component analysis.pdf:pdf},
issn = {19395108},
journal = {Wiley Interdisciplinary Reviews: Computational Statistics},
keywords = {bilinear decomposition,decomposition,factor scores and loadings,is probably the,most popular multivariate statistical,multiple factor analysis,pca,ress press,rincipal component analysis,singular and eigen value,technique},
month = {jul},
number = {4},
pages = {433--459},
title = {{Principal component analysis}},
url = {http://doi.wiley.com/10.1002/wics.101},
volume = {2},
year = {2010}
}
@article{B2014,
address = {Berlin, Heidelberg},
author = {<NAME> and <NAME> <NAME>},
doi = {10.1007/978-3-642-55224-3},
editor = {<NAME> Wa{\'{<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Ciznicki, Kopta, Kulczewski - 2014 - Elliptic solver performance evaluation on modern hardware architectures.pdf:pdf},
isbn = {978-3-642-55223-6},
journal = {Parallel Processing and {\ldots}},
keywords = {elliptic solver,eulag,high perfor-,hybrid parallelisation,intel,mance computing,petascale computing,preconditioning},
pages = {155--165},
publisher = {Springer Berlin Heidelberg},
series = {Lecture Notes in Computer Science},
title = {{Elliptic solver performance evaluation on modern hardware architectures}},
url = {http://link.springer.com/10.1007/978-3-642-55224-3 http://link.springer.com/chapter/10.1007/978-3-642-55224-3{\_}16},
volume = {8384},
year = {2014}
}
@article{Widom2005,
author = {<NAME> <NAME> <NAME>.},
doi = {10.1007/s10955-005-6998-x},
file = {:home/maxhutch/Documents/Mendeley Desktop/Widom et al. - 2005 - Random Tilings of High Symmetry II. Boundary Conditions and Numerical Studies.pdf:pdf},
issn = {0022-4715},
journal = {Journal of Statistical Physics},
keywords = {entropy,monte carlo,quasicrystal,random tiling},
month = {sep},
number = {5-6},
pages = {837--873},
title = {{Random Tilings of High Symmetry: II. Boundary Conditions and Numerical Studies}},
url = {http://www.springerlink.com/index/10.1007/s10955-005-6998-x},
volume = {120},
year = {2005}
}
@article{Giannozzi2009,
abstract = {QUANTUM ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling, based on density-functional theory, plane waves, and pseudopotentials (norm-conserving, ultrasoft, and projector-augmented wave). The acronym ESPRESSO stands for opEn Source Package for Research in Electronic Structure, Simulation, and Optimization. It is freely available to researchers around the world under the terms of the GNU General Public License. QUANTUM ESPRESSO builds upon newly-restructured electronic-structure codes that have been developed and tested by some of the original authors of novel electronic-structure algorithms and applied in the last twenty years by some of the leading materials modeling groups worldwide. Innovation and efficiency are still its main focus, with special attention paid to massively parallel architectures, and a great effort being devoted to user friendliness. QUANTUM ESPRESSO is evolving towards a distribution of independent and interoperable codes in the spirit of an open-source project, where researchers active in the field of electronic-structure calculations are encouraged to participate in the project by contributing their own codes or by implementing their own ideas into existing codes.},
author = {<NAME>, Nicola and Calandra, Matteo and <NAME> and Cavazzoni, Carlo and Ceresoli, Davide and Chiarotti, <NAME> and Cococcioni, Matteo and Dabo, Ismaila and {Dal Corso}, Andrea and <NAME>, Stefano and <NAME>, Guido and Gebauer, Ralph and <NAME> and Gougoussis, Christos and Kokalj, Anton and Lazzeri, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME> and Sclauzero, <NAME>, <NAME>, <NAME>, <NAME>},
doi = {10.1088/0953-8984/21/39/395502},
file = {:home/maxhutch/Documents/Mendeley Desktop/Giannozzi et al. - 2009 - QUANTUM ESPRESSO a modular and open-source software project for quantum simulations of materials.pdf:pdf},
issn = {1361-648X},
journal = {Journal of Physics: Condensed Matter},
month = {sep},
number = {39},
pages = {395502},
pmid = {21832390},
title = {{QUANTUM ESPRESSO: a modular and open-source software project for quantum simulations of materials.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/21832390},
volume = {21},
year = {2009}
}
@article{Peskin1995,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Peskin - 1995 - An introduction to quantum field theory.pdf:pdf},
title = {{An introduction to quantum field theory}},
url = {http://books.google.com/books?hl=en{\&}lr={\&}id=EVeNNcslvX0C{\&}oi=fnd{\&}pg=PR5{\&}dq=Introduction+to+Quantum+Field+Theory{\&}ots=dtngVv2c82{\&}sig=SYaIzdKbnVlnpdwaNWtfsNKCHRw},
year = {1995}
}
@article{Laasonen1993,
author = {<NAME> <NAME> <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Laasonen et al. - 1993 - Car-Parrinello molecular dynamics with Vanderbilt ultrasoft pseudopotentials.pdf:pdf},
journal = {Physical Review B},
number = {16},
pages = {142--153},
title = {{Car-Parrinello molecular dynamics with Vanderbilt ultrasoft pseudopotentials}},
url = {http://onlinelibrary.wiley.com/doi/10.1002/wcms.90/full http://prb.aps.org/abstract/PRB/v47/i16/p10142{\_}1},
volume = {47},
year = {1993}
}
@article{Mizoguchi2011,
author = {<NAME> <NAME> <NAME> <NAME>},
doi = {10.1103/PhysRevLett.106.237001},
file = {:home/maxhutch/Documents/Mendeley Desktop/Mizoguchi et al. - 2011 - LaCo{\_}{\{}2{\}}B{\_}{\{}2{\}} A Co-Based Layered Superconductor with a ThCr{\_}{\{}2{\}}Si{\_}{\{}2{\}}-Type Structure.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {jun},
number = {23},
pages = {2--5},
title = {{LaCo{\_}{\{}2{\}}B{\_}{\{}2{\}}: A Co-Based Layered Superconductor with a ThCr{\_}{\{}2{\}}Si{\_}{\{}2{\}}-Type Structure}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.106.237001},
volume = {106},
year = {2011}
}
@article{Stonebraker2011,
author = {Stonebraker, Michael},
doi = {10.1145/1978542.1978546},
file = {:home/maxhutch/Documents/Mendeley Desktop/Stonebraker - 2011 - Stonebraker on NoSQL and enterprises.pdf:pdf},
issn = {00010782},
journal = {Communications of the ACM},
month = {aug},
number = {8},
pages = {10},
title = {{Stonebraker on NoSQL and enterprises}},
url = {http://portal.acm.org/citation.cfm?doid=1978542.1978546},
volume = {54},
year = {2011}
}
@inproceedings{Brewer2000,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Brewer - 2000 - Towards Robust Distributed Systems.pdf:pdf},
pages = {1--12},
title = {{Towards Robust Distributed Systems}},
year = {2000}
}
@article{Macchiarulo2008,
abstract = {This paper targets the acceleration of complex stochastic simulations of biochemical systems by a dedicated hardware architecture on configurable devices (FPGA). Existing approaches are discussed and compared with the proposed one, and experimental data is introduced to support the feasibility of the system. Retargetable hardware description can be automatically generated for any suitable simulation problem, and preliminary results show very high performance - 100 million time steps per second for large models (1000 reactions).},
author = {<NAME>},
doi = {10.1109/IEMBS.2008.4649413},
file = {:home/maxhutch/Documents/Mendeley Desktop/Macchiarulo - 2008 - A massively parallel implementation of gillespie algorithm on FPGAs.pdf:pdf},
issn = {1557-170X},
journal = {Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference},
keywords = {Algorithms,Computational Biology,Computational Biology: methods,Computer Simulation,Computers,Monte Carlo Method,Software,Stochastic Processes},
month = {jan},
pages = {1343--6},
pmid = {19162916},
title = {{A massively parallel implementation of gillespie algorithm on FPGAs.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/19162916},
volume = {2008},
year = {2008}
}
@article{Lin2008,
abstract = {The next generation sequencing technologies are generating billions of short reads daily. Resequencing and personalized medicine need much faster software to map these deep sequencing reads to a reference genome, to identify SNPs or rare transcripts.},
author = {<NAME> and <NAME> and Zhang, <NAME> and <NAME> and <NAME>},
doi = {10.1093/bioinformatics/btn416},
file = {:home/maxhutch/Documents/Mendeley Desktop/Lin et al. - 2008 - ZOOM! Zillions of oligos mapped.pdf:pdf},
isbn = {0001110100000},
issn = {1367-4811},
journal = {Bioinformatics (Oxford, England)},
keywords = {Algorithms,Contig Mapping,Contig Mapping: methods,Genome, Human,Humans,Oligonucleotides,Oligonucleotides: genetics,Sequence Alignment,Sequence Analysis, DNA,Software,Software Validation},
month = {nov},
number = {21},
pages = {2431--7},
pmid = {18684737},
title = {{ZOOM! Zillions of oligos mapped.}},
url = {http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2732274{\&}tool=pmcentrez{\&}rendertype=abstract},
volume = {24},
year = {2008}
}
@article{Li2010a,
author = {<NAME> Probert, <NAME>. and <NAME> and <NAME>},
doi = {10.1103/PhysRevLett.104.066102},
file = {:home/maxhutch/Documents/Mendeley Desktop/Li et al. - 2010 - Quantum Nature of the Proton in Water-Hydroxyl Overlayers on Metal Surfaces.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {feb},
number = {6},
pages = {066102},
title = {{Quantum Nature of the Proton in Water-Hydroxyl Overlayers on Metal Surfaces}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.104.066102},
volume = {104},
year = {2010}
}
@book{Griffiths1987,
author = {<NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/Griffiths - 1987 - Introduction to elementary particles.pdf:pdf},
publisher = {Wiley Online Library},
title = {{Introduction to elementary particles}},
url = {http://onlinelibrary.wiley.com/doi/10.1002/9783527635467.fmatter/summary},
volume = {131},
year = {1987}
}
@article{Jain2009,
author = {<NAME>. and <NAME>},
doi = {10.1016/j.camwa.2009.02.004},
file = {:home/maxhutch/Documents/Mendeley Desktop/Jain, Tentner - 2009 - A lattice Boltzmann framework to simulate boiling water reactor core hydrodynamics.pdf:pdf},
issn = {08981221},
journal = {Computers {\&} Mathematics with Applications},
month = {sep},
number = {5},
pages = {975--986},
publisher = {Elsevier Ltd},
title = {{A lattice Boltzmann framework to simulate boiling water reactor core hydrodynamics}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0898122109001023},
volume = {58},
year = {2009}
}
@article{Reuter2011,
author = {<NAME> <NAME> <NAME>},
doi = {10.1103/PhysRevB.83.085412},
file = {:home/maxhutch/Documents/Mendeley Desktop/Reuter, <NAME> - 2011 - Probing the surface-to-bulk transition A closed-form constant-scaling algorithm for computing subsurfa.pdf:pdf},
issn = {1098-0121},
journal = {Physical Review B},
month = {feb},
number = {8},
pages = {1--9},
title = {{Probing the surface-to-bulk transition: A closed-form constant-scaling algorithm for computing subsurface Green functions}},
url = {http://link.aps.org/doi/10.1103/PhysRevB.83.085412},
volume = {83},
year = {2011}
}
@article{Tomboulides1997,
author = {<NAME> Lee, <NAME> <NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/tomboulides{\_}lee{\_}orszag{\_}1997.pdf:pdf},
journal = {Journal of scientific computing},
keywords = {combustion,numerical simulation,opposed jet flames,particle combustion,porous,splitting method},
number = {2},
pages = {139--167},
title = {{Numerical Simulation of Low Mach Number Reactive Flows}},
volume = {12},
year = {1997}
}
@article{Sirovich1987,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Sirovich - 1987 - Turbulence and the dynamics of coherent structures part I coherent structures.pdf:pdf},
journal = {Quarterly of Applied Mathematics},
number = {3},
pages = {561--571},
title = {{Turbulence and the dynamics of coherent structures part I: coherent structures}},
volume = {XLV},
year = {1987}
}
@book{Penrose2004,
author = {<NAME>},
booktitle = {Physics},
file = {:home/maxhutch/Documents/Mendeley Desktop/Penrose - 2004 - The road to reality.pdf:pdf},
title = {{The road to reality}},
url = {http://www.math.chalmers.se/{~}ulfp/Review/penrose.pdf},
year = {2004}
}
@article{Carlberg2011,
author = {<NAME>},
doi = {10.1002/nme},
file = {:home/maxhutch/Documents/Mendeley Desktop/Carlberg - 2011 - Efficient non‐linear model reduction via a least‐squares Petrov–Galerkin projection and compressive tensor appro.pdf:pdf},
journal = {International Journal for {\ldots}},
keywords = {compressive approximation,discrete non-linear systems,galerkin projection,gappy data,non-linear model reduction,petrov,proper orthogonal decomposition},
number = {October 2010},
pages = {155--181},
title = {{Efficient non‐linear model reduction via a least‐squares Petrov–Galerkin projection and compressive tensor approximations}},
url = {http://onlinelibrary.wiley.com/doi/10.1002/nme.3050/full},
year = {2011}
}
@article{Shah2010,
author = {<NAME> and <NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Shah, Ranganathan, Chang - 2010 - Data dwarfs Motivating a coverage set for future large data center workloads.pdf:pdf},
journal = {{\ldots} Concerns in Large {\ldots}},
keywords = {coverage set,data center,data centricity,emerging workloads,s},
title = {{Data dwarfs: Motivating a coverage set for future large data center workloads}},
url = {http://www.hpl.hp.com/techreports/2010/HPL-2010-115.pdf},
year = {2010}
}
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author = {Ordej{\'{o}}n, <NAME> Drabold, DA and Martin, RM and Grumbach, MP},
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journal = {Physical Review B},
number = {3},
pages = {1456--1476},
title = {{Linear system-size scaling methods for electronic-structure calculations}},
url = {http://prb.aps.org/abstract/PRB/v51/i3/p1456{\_}1},
volume = {51},
year = {1995}
}
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author = {<NAME> and Sharp, DH},
file = {:home/maxhutch/Documents/Mendeley Desktop//Glimm, Sharp - 1990 - Chaotic mixing as a renormalization-group fixed point.pdf:pdf},
journal = {Physical review letters},
number = {18},
pages = {2137--2139},
title = {{Chaotic mixing as a renormalization-group fixed point}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.64.2137},
volume = {64},
year = {1990}
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@book{Jackson1999,
author = {<NAME>},
booktitle = {American Journal of Physics},
edition = {3rd},
file = {:home/maxhutch/Documents/Mendeley Desktop/Jackson - 1999 - Classical electrodynamics.pdf:pdf},
title = {{Classical electrodynamics}},
url = {http://link.aip.org/link/?AJPIAS/67/841/27 )Z7},
year = {1999}
}
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archivePrefix = {arXiv},
arxivId = {arXiv:1111.0905v1},
author = {Biferale, L and <NAME> and <NAME>},
eprint = {arXiv:1111.0905v1},
file = {:home/maxhutch/Documents/Mendeley Desktop/Biferale, Perlekar, Sbragaglia - 2011 - Convection in multiphase flows using Lattice Boltzmann methods.pdf:pdf},
journal = {Arxiv preprint arXiv:},
pages = {1--5},
title = {{Convection in multiphase flows using Lattice Boltzmann methods}},
url = {http://arxiv.org/abs/1111.0905},
year = {2011}
}
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author = {<NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Kresse, Joubert - 1999 - From ultrasoft pseudopotentials to the projector augmented-wave method.pdf:pdf},
journal = {Physical Review B},
number = {3},
pages = {11--19},
title = {{From ultrasoft pseudopotentials to the projector augmented-wave method}},
url = {http://prb.aps.org/abstract/PRB/v59/i3/p1758{\_}1},
volume = {59},
year = {1999}
}
@article{Kadau2006,
author = {<NAME> and Germann, <NAME> and Lomdahl, <NAME>},
doi = {10.1142/S0129183106010182},
journal = {International Journal of Modern Physics C},
number = {12},
pages = {1755--1761},
title = {{Moluecular Dynamics Comes of Age: 320 Billion Atom Simulation on BlueGene/L}},
url = {http://www.worldscientific.com/doi/abs/10.1142/S0129183106010182},
volume = {17},
year = {2006}
}
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author = {<NAME>.},
doi = {10.1103/PhysRevLett.108.257005},
file = {:home/maxhutch/Documents/Mendeley Desktop/Razzoli et al. - 2012 - Bulk Electronic Structure of Superconducting LaRu{\_}{\{}2{\}}P{\_}{\{}2{\}} Single Crystals Measured by Soft-X-Ray Angle-Resolved.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {jun},
number = {25},
pages = {1--5},
title = {{Bulk Electronic Structure of Superconducting LaRu{\_}{\{}2{\}}P{\_}{\{}2{\}} Single Crystals Measured by Soft-X-Ray Angle-Resolved Photoemission Spectroscopy}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.108.257005},
volume = {108},
year = {2012}
}
@article{Dest98,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Destainville - 1998 - Entropy and boundary conditions in random rhombus tilings.pdf:pdf},
journal = {Journal of Physics A: Mathematical and General},
title = {{Entropy and boundary conditions in random rhombus tilings}},
volume = {6123},
year = {1998}
}
@article{Frisch2006,
author = {<NAME>},
file = {::;::},
journal = {Development},
title = {{The Development of Large - Area Psec - Resolution TOF Systems}},
url = {http://indico.cern.ch/getFile.py/access?contribId=3{\&}resId=1{\&}materialId=slides{\&}confId=2846},
year = {2006}
}
@article{Tremsin1999,
author = {<NAME>. and Siegmund, <NAME>.},
doi = {10.1063/1.1149905},
file = {::},
issn = {00346748},
journal = {Review of Scientific Instruments},
number = {8},
pages = {3282},
title = {{Spatial distribution of electron cloud footprints from microchannel plates: Measurements and modeling}},
url = {http://link.aip.org/link/RSINAK/v70/i8/p3282/s1{\&}Agg=doi},
volume = {70},
year = {1999}
}
@article{Credoa,
author = {<NAME>. and <NAME>. and <NAME>. and <NAME>.},
doi = {10.1109/NSSMIC.2004.1462263},
file = {::},
isbn = {0-7803-8700-7},
journal = {IEEE Symposium Conference Record Nuclear Science 2004.},
pages = {586--590},
publisher = {Ieee},
title = {{Picosecond time-of-flight measurement for colliders using Cherenkov light}},
url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=1462263},
volume = {1}
}
@techreport{Jensen2009,
author = {<NAME>},
file = {::},
title = {{The Fundamental Processes (Photon {\&} Electron Level)}},
year = {2009}
}
@article{Kasuga1998,
author = {<NAME>},
file = {::},
journal = {Society},
number = {January},
title = {{Observation of a Small $\backslash$nu{\_}$\backslash$mu/$\backslash$nu{\_}e Ratio of Atmospheric Neutrinos in Super-Kamiokande by the Method of Particle Identification}},
url = {http://www-sk.icrr.u-tokyo.ac.jp/sk/pub/main.pdf},
year = {1998}
}
@misc{Smedley2009,
author = {<NAME>},
file = {::;::},
pages = {25},
title = {{John Smedley Factors Affecting QE and Dark Current in Alkali}},
url = {http://psec.uchicago.edu/photocathodeConference/talks/4-John{\_}Smedley{\_}Factors{\_}Affecting{\_}QE{\_}and{\_}Dark{\_}Current{\_}in{\_}Alkali.pdf},
year = {2009}
}
@article{Pinfold2006,
author = {<NAME>},
file = {::},
journal = {Group},
keywords = {background rejection},
mendeley-tags = {background rejection},
title = {{QUARTIC Front - end Readout – Initial Steps The QUARTIC Working Group}},
url = {http://indico.cern.ch/getFile.py/access?contribId=8{\&}resId=1{\&}materialId=slides{\&}confId=2846},
year = {2006}
}
@techreport{Anderson2009,
author = {<NAME> <NAME> <NAME> <NAME>, Alexander and Stanek, Robert and Weerts, Hendrik and Wetstein, Matthew and Yusof, Zikri and Adams, Bernhard and Attenkofer, Klaus and Insepov, Zeke and Elam, Jeffrey and Libera, Joseph and Pellin, Michael and Veryovkin, Igor and Wang, Hau and Zinovev, Alexander and Beaulieu, David and Sullivan, Neal and Stenton, Ken and <NAME> and Frisch, Henry and Genat, Jean-francois and Heintz, Mary and Northrop, Richard and Ramberg, Erik and Ronzhin, Anatoly and Sellberg, Greg and Kennedy, James and Nishimura, Kurtis and Rosen, Marc and Ruckman, Larry and Varner, Gary and Abrams, Robert and Ivanov, Valentin and Roberts, Thomas and Siegmund, Oswald and Tremsin, Anton and Routkevitch, Dmitri},
booktitle = {Design},
file = {:home/maxhutch/Documents/Mendeley Desktop//Anderson et al. - 2009 - The Development of Large-Area Fast Photo-detectors.pdf:pdf},
title = {{The Development of Large-Area Fast Photo-detectors}},
url = {http://hep.uchicago.edu/{~}frisch/talks/Project{\_}description{\_}nobudgets.pdf},
year = {2009}
}
@article{Mcginnis2011,
author = {<NAME>},
file = {::},
journal = {October},
pages = {1--25},
title = {{Studies of transmission line anodes in a MCP-based detector}},
year = {2011}
}
@techreport{Frisch2011,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Frisch - Unknown - Progress in developing large-area high resolution photo-detectors (LAPPD).pdf:pdf},
title = {{Progress in developing large-area high resolution photo-detectors (LAPPD)}},
url = {http://hep.uchicago.edu/{~}frisch/talks/Ant11{\_}v16.pdf},
year = {2011}
}
@article{Frisch2009,
author = {<NAME> <NAME> <NAME> <NAME> <NAME> <NAME>.},
doi = {10.1109/NSSMIC.2009.5401676},
file = {::},
isbn = {978-1-4244-3961-4},
journal = {2009 IEEE Nuclear Science Symposium Conference Record (NSS/MIC)},
month = {oct},
pages = {3106--3110},
publisher = {Ieee},
title = {{A design of PET detector using microchannel plate PMT with transmission line readout}},
url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=5401676},
year = {2009}
}
@techreport{Oberla2011,
author = {Oberla, Eric},
file = {:home/maxhutch/Documents/Mendeley Desktop//Oberla - 2011 - Electronics for a Position {\&} Time Sensing Large Area Photo- Detector System.pdf:pdf},
title = {{Electronics for a Position {\&} Time Sensing Large Area Photo- Detector System}},
year = {2011}
}
@article{Genat2009,
author = {<NAME> <NAME> <NAME> <NAME>},
doi = {10.1016/j.nima.2009.05.193},
file = {::},
issn = {01689002},
month = {aug},
number = {2},
pages = {387--393},
title = {{Signal Processing for Pico-second Resolution Timing Measurements}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S016890020901167X http://psec.uchicago.edu/Papers/NIM{\_}v8b{\_}final.pdf},
volume = {607},
year = {2009}
}
@article{BhatS.;CredoT.;Frisch2006,
author = {{<NAME>.; <NAME>.; <NAME>.},
file = {::},
title = {{Simulation of a TOF Picosecond Device}},
url = {http://psec.uchicago.edu/Documents/TOF{\_}simulations.pdf},
year = {2006}
}
@article{Youngs1984,
author = {Youngs, <NAME>.},
doi = {10.1016/0167-2789(84)90512-8},
file = {:home/maxhutch/Documents/Mendeley Desktop/Youngs - 1984 - Numerical simulation of turbulent mixing by Rayleigh-Taylor instability.pdf:pdf},
issn = {01672789},
journal = {Physica D: Nonlinear Phenomena},
month = {jul},
number = {1-3},
pages = {32--44},
title = {{Numerical simulation of turbulent mixing by Rayleigh-Taylor instability}},
url = {http://linkinghub.elsevier.com/retrieve/pii/0167278984905128},
volume = {12},
year = {1984}
}
@article{Abarzhi2006,
abstract = {We report nonlinear solutions for a system of conservation laws describing the dynamics of the large-scale coherent structure of bubbles and spikes in the Rayleigh-Taylor instability (RTI) for fluids with a finite density ratio. Three-dimensional flows are considered with general type of symmetry in the plane normal to the direction of gravity. The nonlocal properties of the interface evolution are accounted for on the basis of group theory. It is shown that isotropic coherent structures are stable. For anisotropic structures, secondary instabilities develop with the growth rate determined by the density ratio. For stable structures, the curvature and velocity of the nonlinear bubble have nontrivial dependencies on the density ratio, yet their mutual dependence on one another has an invariant form independent of the density ratio. The process of bubble merge is not considered. Based on the obtained results we argue that the large-scale coherent dynamics in RTI has a multiscale character and is governed by two length scales: the period of the coherent structure and the bubble (spike) position.},
author = {<NAME>. and <NAME>. and <NAME>.},
doi = {10.1103/PhysRevE.73.036310},
file = {::},
issn = {15393755},
journal = {Physical Review E - Statistical, Nonlinear, and Soft Matter Physics},
pages = {1--11},
pmid = {16605654},
title = {{Multiscale character of the nonlinear coherent dynamics in the Rayleigh-Taylor instability}},
volume = {73},
year = {2006}
}
@article{Cabot2006,
author = {Cabot, <NAME>. and Cook, <NAME>.},
doi = {10.1038/nphys361},
file = {:home/maxhutch/Documents/Mendeley Desktop//Cabot, Cook - 2006 - Reynolds number effects on Rayleigh–Taylor instability with possible implications for type Ia supernovae.pdf:pdf},
issn = {1745-2473},
journal = {Nature Physics},
month = {jul},
number = {8},
pages = {562--568},
title = {{Reynolds number effects on Rayleigh–Taylor instability with possible implications for type Ia supernovae}},
url = {http://www.nature.com/doifinder/10.1038/nphys361},
volume = {2},
year = {2006}
}
@article{Youngs1989,
author = {Youngs, DL},
file = {:home/maxhutch/Documents/Mendeley Desktop/Youngs - 1989 - Modelling turbulent mixing by Rayleigh-Taylor instability.pdf:pdf},
journal = {Physica D: Nonlinear Phenomena},
pages = {270--287},
title = {{Modelling turbulent mixing by Rayleigh-Taylor instability}},
url = {http://www.sciencedirect.com/science/article/pii/0167278989901358},
volume = {37},
year = {1989}
}
@article{Banerjee2011,
author = {<NAME> and <NAME> and <NAME> <NAME> <NAME>.},
doi = {10.1063/1.3555523},
file = {:home/maxhutch/Documents/Mendeley Desktop/Banerjee et al. - 2011 - Combined effect of viscosity and vorticity on single mode Rayleigh-Taylor instability bubble growth.pdf:pdf},
issn = {1070664X},
journal = {Physics of Plasmas},
pages = {1--5},
title = {{Combined effect of viscosity and vorticity on single mode Rayleigh-Taylor instability bubble growth}},
volume = {18},
year = {2011}
}
@article{Bell2004,
author = {Bell, JB and Day, MS},
file = {:home/maxhutch/Documents/Mendeley Desktop//Bell, Day - 2004 - Direct numerical simulations of type ia supernovae flames. II. The Rayleigh-Taylor instability.pdf:pdf},
journal = {The Astrophysical {\ldots}},
number = {1993},
pages = {883--906},
title = {{Direct numerical simulations of type ia supernovae flames. II. The Rayleigh-Taylor instability}},
url = {http://iopscience.iop.org/0004-637X/608/2/883},
year = {2004}
}
@article{Dimonte2000a,
author = {<NAME>},
doi = {10.1063/1.874060},
file = {:home/maxhutch/Documents/Mendeley Desktop/Dimonte - 2000 - Spanwise homogeneous buoyancy-drag model for Rayleigh-Taylor mixing and experimental evaluation.pdf:pdf},
issn = {1070-664X},
journal = {Physics of Plasmas},
number = {2000},
pages = {2255 ---- 69},
title = {{Spanwise homogeneous buoyancy-drag model for Rayleigh-Taylor mixing and experimental evaluation.}},
url = {http://linkseeker.lanl.gov/lanl?url{\_}ver=Z39.88-2004{\&}ctx{\_}ver=Z39.88-2004{\&}ctx{\_}enc=info:ofi/enc:UTF-8{\&}rft{\_}val{\_}fmt=info:ofi/fmt:kev:mtx:journal{\&}rft.genre=article{\&}rft.issn=1070-664x{\&}rft.coden=PHPAEN{\&}rft.date=2000{\&}rft.volume=7{\&}rft.issue=6{\&}rft.spage=2255{\&}rft.epa},
volume = {7},
year = {2000}
}
@article{Goncharov2002,
author = {<NAME>.},
doi = {10.1103/PhysRevLett.88.134502},
file = {:home/maxhutch/Documents/Mendeley Desktop/Goncharov - 2002 - Analytical Model of Nonlinear, Single-Mode, Classical Rayleigh-Taylor Instability at Arbitrary Atwood Numbers.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {mar},
number = {13},
pages = {134502},
title = {{Analytical Model of Nonlinear, Single-Mode, Classical Rayleigh-Taylor Instability at Arbitrary Atwood Numbers}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.88.134502},
volume = {88},
year = {2002}
}
@article{Waddell2001,
author = {<NAME>. and <NAME>. and <NAME>.},
doi = {10.1063/1.1359762},
file = {::},
issn = {10706631},
journal = {Physics of Fluids},
number = {5},
pages = {1263},
title = {{Experimental study of Rayleigh–Taylor instability: Low Atwood number liquid systems with single-mode initial perturbations}},
url = {http://link.aip.org/link/PHFLE6/v13/i5/p1263/s1{\&}Agg=doi},
volume = {13},
year = {2001}
}
@article{Wang2010,
author = {<NAME> <NAME> <NAME> <NAME>.},
doi = {10.1209/0295-5075/90/15001},
file = {:home/maxhutch/Documents/Mendeley Desktop/nsa.pdf:pdf},
issn = {0295-5075},
journal = {EPL (Europhysics Letters)},
number = {1},
pages = {15001},
title = {{Nonlinear saturation amplitude in the Rayleigh-Taylor instability at arbitrary Atwood numbers with continuous profiles}},
url = {http://stacks.iop.org/0295-5075/90/i=1/a=15001?key=crossref.495a19cadca61075a10a69380b854729},
volume = {90},
year = {2010}
}
@article{Lim2010,
abstract = {Rayleigh-Taylor mixing is a classical hydrodynamic instability that occurs when a light fluid pushes against a heavy fluid. The two main sources of nonideal behavior in Rayleigh-Taylor (RT) mixing are regularizations (physical and numerical), which produce deviations from a pure Euler equation, scale invariant formulation, and nonideal (i.e., experimental) initial conditions. The Kolmogorov theory of turbulence predicts stirring at all length scales for the Euler fluid equations without regularization. We interpret mathematical theories of existence and nonuniqueness in this context, and we provide numerical evidence for dependence of the RT mixing rate on nonideal regularizations; in other words, indeterminacy when modeled by Euler equations. Operationally, indeterminacy shows up as nonunique solutions for RT mixing, parametrized by Schmidt and Prandtl numbers, in the large Reynolds number (Euler equation) limit. Verification and validation evidence is presented for the large eddy simulation algorithm used here. Mesh convergence depends on breaking the nonuniqueness with explicit use of the laminar Schmidt and Prandtl numbers and their turbulent counterparts, defined in terms of subgrid scale models. The dependence of the mixing rate on the Schmidt and Prandtl numbers and other physical parameters will be illustrated. We demonstrate numerically the influence of initial conditions on the mixing rate. Both the dominant short wavelength initial conditions and long wavelength perturbations are observed to play a role. By examination of two classes of experiments, we observe the absence of a single universal explanation, with long and short wavelength initial conditions, and the various physical and numerical regularizations contributing in different proportions in these two different contexts.},
author = {<NAME> <NAME> Glimm, <NAME>, <NAME>},
doi = {10.1073/pnas.1002410107},
file = {::},
issn = {1091-6490},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
month = {jul},
number = {29},
pages = {12786--92},
pmid = {20615983},
title = {{Nonideal Rayleigh-Taylor mixing.}},
url = {http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2919961{\&}tool=pmcentrez{\&}rendertype=abstract},
volume = {107},
year = {2010}
}
@article{Dalziel1999,
author = {Dalziel, <NAME> <NAME> <NAME>.},
file = {::},
journal = {Journal of fluid {\ldots}},
pages = {1--48},
title = {{Self-similarity and internal structure of turbulence induced by Rayleigh–Taylor instability}},
url = {http://journals.cambridge.org/abstract{\_}S002211209900614X},
volume = {399},
year = {1999}
}
@article{Kadau2007,
abstract = {A ubiquitous example of fluid mixing is the Rayleigh-Taylor instability, in which a heavy fluid initially sits atop a light fluid in a gravitational field. The subsequent development of the unstable interface between the two fluids is marked by several stages. At first, each interface mode grows exponentially with time before transitioning to a nonlinear regime characterized by more complex hydrodynamic mixing. Unfortunately, traditional continuum modeling of this process has generally been in poor agreement with experiment. Here, we indicate that the natural, random fluctuations of the flow field present in any fluid, which are neglected in continuum models, can lead to qualitatively and quantitatively better agreement with experiment. We performed billion-particle atomistic simulations and magnetic levitation experiments with unprecedented control of initial interface conditions. A comparison between our simulations and experiments reveals good agreement in terms of the growth rate of the mixing front as well as the new observation of droplet breakup at later times. These results improve our understanding of many fluid processes, including interface phenomena that occur, for example, in supernovae, the detachment of droplets from a faucet, and ink jet printing. Such instabilities are also relevant to the possible energy source of inertial confinement fusion, in which a millimeter-sized capsule is imploded to initiate nuclear fusion reactions between deuterium and tritium. Our results suggest that the applicability of continuum models would be greatly enhanced by explicitly including the effects of random fluctuations.},
author = {<NAME> Rosenblatt, <NAME>, <NAME>, <NAME> and <NAME> Carl{\`{e}}s, <NAME>},
doi = {10.1073/pnas.0702871104},
file = {:home/maxhutch/Documents/Mendeley Desktop/Kadau et al. - 2007 - The importance of fluctuations in fluid mixing.pdf:pdf},
issn = {0027-8424},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
keywords = {Magnetics,Mathematical Computing,Rheology,Solutions,Solutions: chemistry},
month = {may},
number = {19},
pages = {7741--5},
pmid = {17470811},
title = {{The importance of fluctuations in fluid mixing.}},
url = {http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1876517{\&}tool=pmcentrez{\&}rendertype=abstract},
volume = {104},
year = {2007}
}
@article{keyes2013multiphysics,
author = {<NAME> and McInnes, <NAME> and Woodward, Carol and Gropp, William and Myra, Eric and Pernice, Michael and <NAME> and Brown, Jed and Clo, Alain and <NAME> and Others},
journal = {The International Journal of High Performance Computing Applications},
number = {1},
title = {{Multiphysics simulations: Challenges and opportunities}},
volume = {27},
year = {2013}
}
@article{Chandrasekhar1953,
author = {<NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Chandrasekhar, Fermi - 1953 - Problems of gravitational stability in the presence of a magnetic field.pdf:pdf},
journal = {Astrophysical Journal},
title = {{Problems of gravitational stability in the presence of a magnetic field}},
url = {http://repository.ias.ac.in/76768/},
year = {1953}
}
@article{Rayleigh1883,
author = {<NAME>},
doi = {10.1112/plms/s1-14.1.170},
file = {:home/maxhutch/Documents/Mendeley Desktop/Rayleigh - 1883 - Investigation of the character of the equilibrium of an incompressible heavy fluid of variable density, Scientific pap.pdf:pdf},
journal = {Proc. London Math. Soc.},
number = {39},
title = {{Investigation of the character of the equilibrium of an incompressible heavy fluid of variable density, Scientific papers}},
url = {http://scholar.google.com/scholar?hl=en{\&}btnG=Search{\&}q=intitle:Investigation+of+the+Character+of+the+Equilibrium+of+an+Incompressible+Heavy+Fluid+of+Variable+Density{\#}1},
year = {1883}
}
@article{Ramaprabhu2004,
author = {<NAME>. and <NAME>.},
doi = {10.1063/1.1765171},
file = {:home/maxhutch/Documents/Mendeley Desktop//Ramaprabhu, Andrews - 2004 - On the initialization of Rayleigh–Taylor simulations.pdf:pdf},
issn = {10706631},
journal = {Physics of Fluids},
number = {8},
pages = {L59},
title = {{On the initialization of Rayleigh–Taylor simulations}},
url = {http://link.aip.org/link/PHFLE6/v16/i8/pL59/s1{\&}Agg=doi},
volume = {16},
year = {2004}
}
@techreport{LeLevier1955,
author = {<NAME> <NAME> <NAME>.},
file = {:home/maxhutch/Documents/Mendeley Desktop/LeLevier, Lasher, Bjorklund - 1955 - Effect of a density gradient on Taylor Instability.pdf:pdf},
institution = {Lawrence Radiation Laboratory},
title = {{Effect of a density gradient on Taylor Instability}},
year = {1955}
}
@article{Zingale2005,
abstract = {Flame instabilities play a dominant role in accelerating the burning front to a large fraction of the speed of sound in a Type Ia supernova. We present a three-dimensional numerical simulation of a Rayleigh-Taylor unstable carbon flame, following its evolution through the transition to turbulence. A low Mach number hydrodynamics method is used, freeing us from the harsh timestep restrictions imposed by sound waves. We fully resolve the thermal structure of the flame and its reaction zone, eliminating the need for a flame model. A single density is considered, {\$}1.5\backslashtimes 10{\^{}}7 \backslashgcc{\$}, and half carbon$\backslash$slash half oxygen fuel--conditions under which the flame propagated in the flamelet regime in our related two-dimensional study. We compare to a corresponding two-dimensional simulation, and show that while fire-polishing keeps the small features suppressed in two dimensions, turbulence wrinkles the flame on far smaller scales in the three-dimensional case, suggesting that the transition to the distributed burning regime occurs at higher densities in three dimensions. Detailed turbulence diagnostics are provided. We show that the turbulence follows a Kolmogorov spectrum and is highly anisotropic on the large scales, with a much larger integral scale in the direction of gravity. Furthermore, we demonstrate that it becomes more isotropic as it cascades down to small scales. Based on the turbulent statistics and the flame properties of our simulation, we compute the Gibson scale. We show the progress of the turbulent flame through a classic combustion regime diagram, indicating that the flame just enters the distributed burning regime near the end of our simulation.},
archivePrefix = {arXiv},
arxivId = {astro-ph/0501655},
author = {<NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>.},
doi = {10.1086/433164},
eprint = {0501655},
file = {:home/maxhutch/Documents/Mendeley Desktop/62108.web.pdf:pdf},
issn = {0004-637X},
journal = {The Astrophysical Journal},
pages = {1021--1034},
primaryClass = {astro-ph},
title = {{Three-dimensional Numerical Simulations of Rayleigh-Taylor Unstable Flames in Type Ia Supernovae}},
url = {http://arxiv.org/abs/astro-ph/0501655},
volume = {632},
year = {2005}
}
@article{Stern1969,
author = {<NAME>, <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//<NAME> - 1969 - Salt fingers and convecting layers.pdf:pdf},
journal = {Deep Sea Research and Oceanographic {\ldots}},
number = {March},
title = {{Salt fingers and convecting layers}},
url = {http://www.sciencedirect.com/science/article/pii/0011747169900382},
volume = {16},
year = {1969}
}
@article{Alon1995,
abstract = {The nonlinear evolution of large structure in Rayleigh- Taylor and Richtmyer - Meshkov bubble and spike fronts is studied numerically and explained theoretically on the basis of single-mode and two-bubble interaction physics at Atwood numbers(A). Multimode ... $\backslash$n},
author = {<NAME>. and <NAME>. and <NAME> <NAME>.},
doi = {10.1103/PhysRevLett.74.534},
file = {:home/maxhutch/Documents/Mendeley Desktop/PhysRevLett.74.534.pdf:pdf},
issn = {00319007},
journal = {Physical Review Letters},
number = {4},
pages = {534--537},
pmid = {10058782},
title = {{Power laws and similarity of Rayleigh-Taylor and Richtmyer-Meshkov mixing fronts at all density ratios}},
volume = {74},
year = {1995}
}
@article{Sohn2011,
author = {<NAME>},
file = {::},
journal = {Journal of the Physical Society of Japan},
keywords = {bubble,point vortex method,rayleigh,spike,taylor instability,vortex dynamics,vortex sheet},
pages = {1--7},
title = {{Late-Time Vortex Dynamics of Rayleigh-Taylor Instability}},
volume = {80},
year = {2011}
}
@article{Mueschke2009,
author = {Mueschke, <NAME>. and Schilling, <NAME> Youngs, <NAME>. and Andrews, <NAME>.},
doi = {10.1017/S0022112009006132},
file = {::},
issn = {0022-1120},
journal = {Journal of Fluid Mechanics},
month = {jul},
pages = {17},
title = {{Measurements of molecular mixing in a high-Schmidt-number Rayleigh–Taylor mixing layer}},
url = {http://www.journals.cambridge.org/abstract{\_}S0022112009006132},
volume = {632},
year = {2009}
}
@article{Jacobs1988,
author = {Jacobs, <NAME>. and <NAME>.},
doi = {10.1017/S002211208800045X},
file = {:home/maxhutch/Documents/Mendeley Desktop/S002211208800045Xa.pdf:pdf},
issn = {0022-1120},
journal = {J. Fluid Mech.},
pages = {329--352},
title = {{Three-dimensional Rayleigh-Taylor instability Part 1. Weakly nonlinear theory}},
url = {http://journals.cambridge.org/abstract{\_}S002211208800045X$\backslash$nhttp://www.journals.cambridge.org/abstract{\_}S002211208800045X},
volume = {187},
year = {1988}
}
@article{Kilkenny1994a,
abstract = {It has been recognized for many years that the most significant limitation of inertial confinement fusion(ICF) is the Rayleigh–Taylor (RT) instability. It limits the distance an ablatively driven shell can be moved to several times its initial thickness. Fortunately material flow through the unstable region at velocity v A reduces the growth rate to √kg/1+kL−$\beta$kv A with $\beta$ from 2–3. In recent years experiments using both x‐ray drive and smoothed laser drive to accelerate foils have confirmed the community's understanding of the ablative RT instability in planar geometry. The growth of small initial modulations on the foils is measured for growth factors up to 60 for direct drive and 80 for indirect drive. For x‐ray drive large stabilization is evident. After some growth, the instability enters the nonlinear phase when mode coupling and saturation are also seen and compare well with modeling. Normalized growth rates for direct drive are measured to be higher, but strategies for reduction by raising the isentrope are being investigated. For direct drive, high spatial frequencies are imprinted from the laser beam and amplified by the RT instability. Modeling shows an understanding of this ‘‘laser imprinting.''},
author = {<NAME> <NAME> <NAME> <NAME> <NAME> <NAME> <NAME> <NAME>.},
doi = {10.1063/1.870688},
file = {::},
issn = {1070664X},
journal = {Physics of Plasmas},
number = {5},
pages = {1379},
title = {{A review of the ablative stabilization of the Rayleigh–Taylor instability in regimes relevant to inertial confinement fusion}},
url = {http://scitation.aip.org/content/aip/journal/pop/1/5/10.1063/1.870688},
volume = {1},
year = {1994}
}
@article{Ramaprabhu2012,
author = {<NAME> <NAME> <NAME>.},
doi = {10.1063/1.4733396},
file = {:home/maxhutch/Documents/Mendeley Desktop//Ramaprabhu et al. - 2012 - The late-time dynamics of the single-mode Rayleigh-Taylor instability.pdf:pdf},
issn = {10706631},
journal = {Physics of Fluids},
number = {7},
pages = {074107},
title = {{The late-time dynamics of the single-mode Rayleigh-Taylor instability}},
url = {http://link.aip.org/link/PHFLE6/v24/i7/p074107/s1{\&}Agg=doi},
volume = {24},
year = {2012}
}
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author = {<NAME>. and <NAME> <NAME>.},
doi = {10.1016/j.physleta.2003.09.013},
file = {:home/maxhutch/Documents/Mendeley Desktop/Abarzhi, Nishihara, Glimm - 2003 - Rayleigh–Taylor and Richtmyer–Meshkov instabilities for fluids with a finite density ratio.pdf:pdf},
issn = {03759601},
journal = {Physics Letters A},
month = {oct},
number = {5-6},
pages = {470--476},
title = {{Rayleigh–Taylor and Richtmyer–Meshkov instabilities for fluids with a finite density ratio}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0375960103013550},
volume = {317},
year = {2003}
}
@article{Gardner1988,
author = {<NAME> <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Gardner, Glimm, McBryan - 1988 - The dynamics of bubble growth for Rayleigh–Taylor unstable interfaces.pdf:pdf},
journal = {Physics of {\ldots}},
title = {{The dynamics of bubble growth for Rayleigh–Taylor unstable interfaces}},
url = {http://link.aip.org/link/?PFLDAS/31/447/1},
year = {1988}
}
@article{Aref1989,
author = {<NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Aref, Tryggvason - 1989 - Model of rayleigh-taylor instability.pdf:pdf},
journal = {Physical review letters},
number = {7},
pages = {749--752},
title = {{Model of rayleigh-taylor instability}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.62.749},
volume = {62},
year = {1989}
}
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author = {<NAME>. and Cabot, William and <NAME>.},
doi = {10.1017/S0022112004009681},
file = {:home/maxhutch/Documents/Mendeley Desktop/Cook, Cabot, Miller - 2004 - The mixing transition in RayleighTaylor instability.pdf:pdf},
issn = {0022-1120},
journal = {Journal of Fluid Mechanics},
month = {jul},
pages = {333--362},
title = {{The mixing transition in RayleighTaylor instability}},
url = {http://www.journals.cambridge.org/abstract{\_}S0022112004009681},
volume = {511},
year = {2004}
}
@article{Layzer1955,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Layzer - 1955 - On the Instability of Superposed Fluids in a Gravitational Field.pdf:pdf},
journal = {The astrophysical journal},
title = {{On the Instability of Superposed Fluids in a Gravitational Field.}},
url = {http://adsabs.harvard.edu/full/1955ApJ...122....1L},
year = {1955}
}
@article{Chen1996,
abstract = {-      –   . [Physics of Fluids 8, 816 (1996)]. <NAME>, <NAME>, <NAME>. Sharp, <NAME>. Abstract. },
author = {<NAME> and <NAME> and Sharp, <NAME>. and <NAME>},
doi = {10.1063/1.868863},
file = {:home/maxhutch/Documents/Mendeley Desktop/1.868863.pdf:pdf},
issn = {10706631},
journal = {Physics of Fluids},
number = {3},
pages = {816},
title = {{A two-phase flow model of the Rayleigh–Taylor mixing zone}},
url = {http://scitation.aip.org/content/aip/journal/pof2/8/3/10.1063/1.868863},
volume = {8},
year = {1996}
}
@article{Brook1990,
author = {<NAME>, DH},
file = {:home/maxhutch/Documents/Mendeley Desktop//Glimm, Sharp - 1990 - Chaotic mixing as a renormalization-group fixed point.pdf:pdf},
journal = {Physical review letters},
number = {18},
pages = {2137--2139},
title = {{Chaotic mixing as a renormalization-group fixed point}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.64.2137},
volume = {64},
year = {1990}
}
@article{Ofer1996,
author = {<NAME> <NAME> <NAME> McCrory, <NAME> Verdon, CP},
file = {:home/maxhutch/Documents/Mendeley Desktop//Ofer et al. - 1996 - Modal model for the nonlinear multimode Rayleigh–Taylor instability.pdf:pdf},
journal = {Physics of Plasmas},
number = {May 2013},
title = {{Modal model for the nonlinear multimode Rayleigh–Taylor instability}},
url = {http://link.aip.org/link/?PHPAEN/3/3073/1},
volume = {3},
year = {1996}
}
@article{Wilkinson2007,
author = {<NAME>. and <NAME>.},
doi = {10.1063/1.2813548},
file = {:home/maxhutch/Documents/Mendeley Desktop//Wilkinson, Jacobs - 2007 - Experimental study of the single-mode three-dimensional Rayleigh-Taylor instability.pdf:pdf},
issn = {10706631},
journal = {Physics of Fluids},
number = {12},
pages = {124102},
title = {{Experimental study of the single-mode three-dimensional Rayleigh-Taylor instability}},
url = {http://link.aip.org/link/PHFLE6/v19/i12/p124102/s1{\&}Agg=doi},
volume = {19},
year = {2007}
}
@article{Berning1998,
author = {<NAME>. and <NAME>.},
doi = {10.1063/1.869677},
file = {:home/maxhutch/Documents/Mendeley Desktop//Berning, Rubenchik - 1998 - A weakly nonlinear theory for the dynamical Rayleigh–Taylor instability.pdf:pdf},
issn = {10706631},
journal = {Physics of Fluids},
number = {7},
pages = {1564},
title = {{A weakly nonlinear theory for the dynamical Rayleigh–Taylor instability}},
url = {http://link.aip.org/link/PHFLE6/v10/i7/p1564/s1{\&}Agg=doi},
volume = {10},
year = {1998}
}
@article{Wei2012,
author = {<NAME> and <NAME>},
doi = {10.1103/PhysRevE.86.046405},
file = {:home/maxhutch/Documents/Mendeley Desktop/Wei, Livescu - 2012 - Late-time quadratic growth in single-mode Rayleigh-Taylor instability.pdf:pdf},
issn = {1539-3755},
journal = {Physical Review E},
month = {oct},
number = {4},
pages = {046405},
title = {{Late-time quadratic growth in single-mode Rayleigh-Taylor instability}},
url = {http://link.aps.org/doi/10.1103/PhysRevE.86.046405},
volume = {86},
year = {2012}
}
@article{Sohn2003,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Sohn - 2003 - Simple potential-flow model of Rayleigh-Taylor and Richtmyer-Meshkov instabilities for all density ratios.pdf:pdf},
journal = {Physical review. E, Statistical, nonlinear, and soft matter physics},
title = {{Simple potential-flow model of Rayleigh-Taylor and Richtmyer-Meshkov instabilities for all density ratios}},
year = {2003}
}
@article{Rikanati2000,
author = {<NAME>. and <NAME>. and <NAME>. and <NAME>.},
doi = {10.1086/313331},
file = {:home/maxhutch/Documents/Mendeley Desktop//Rikanati et al. - 2000 - Statistical Mechanics Merger Model for Hydrodynamic Instabilities.pdf:pdf},
issn = {0067-0049},
journal = {The Astrophysical Journal Supplement Series},
month = {apr},
number = {2},
pages = {451--457},
title = {{Statistical Mechanics Merger Model for Hydrodynamic Instabilities}},
url = {http://stacks.iop.org/0067-0049/127/i=2/a=451},
volume = {127},
year = {2000}
}
@article{Alon1994,
author = {<NAME> <NAME> <NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Alon et al. - 1994 - Scale invariant mixing rates of hydrodynamically unstable interfaces.pdf:pdf},
journal = {Physical review letters},
number = {18},
pages = {2867--2870},
title = {{Scale invariant mixing rates of hydrodynamically unstable interfaces}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.72.2867},
volume = {72},
year = {1994}
}
@misc{Chandrasekhar1955,
abstract = {This paper is devoted to a consideration fo the following problem: given a static state in which an incompressible viscous fluid is arranged in horizontal strata and the density is a function of the vertical coordinate only, to determine the initial manner of development of an infinitesimal disturbance. The mathematical problem i sreduced to one in characteristic values in a fourth-order differential equation and a variational principle characterizing the solution is enunciated. The particular case of two uniform fluids of different densities (but the same kinematic viscosity) separated by a horizontal boundary is considered in some detail. The mode of maximum instability in case the upper fluid is more dense and the manner of decay in case the lower fluid is more dense are determined; and the results of the calculations are illustreatd graphically. Gravity waves (obtained in the limit when the density of the upper fulid is zero) are also treated.},
author = {<NAME>.},
booktitle = {Mathematical Proceedings of the Cambridge Philosophical Society},
doi = {10.1017/S0305004100030048},
file = {:home/maxhutch/Documents/Mendeley Desktop/Chandrasekhar - 1955 - The character of the equilibrium of an incompressible heavy viscous fluid of variable density.pdf:pdf},
isbn = {0305004100030},
issn = {0305-0041},
pages = {162},
title = {{The character of the equilibrium of an incompressible heavy viscous fluid of variable density}},
volume = {51},
year = {1955}
}
@article{Dimonte1996,
author = {<NAME> <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Dimonte, Schneider - 1996 - Turbulent Rayleigh-Taylor instability experiments with variable acceleration.pdf:pdf},
issn = {1063-651X},
journal = {Physical Review E},
month = {oct},
number = {4},
pages = {3740--3743},
pmid = {9965524},
title = {{Turbulent Rayleigh-Taylor instability experiments with variable acceleration}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/9965524 http://pre.aps.org/abstract/PRE/v54/i4/p3740{\_}1},
volume = {54},
year = {1996}
}
@article{Livescu2010,
author = {<NAME> <NAME> <NAME>},
doi = {10.1088/0031-8949/2010/T142/014015},
file = {:tmp/1402-4896{\_}2010{\_}T142{\_}014015.pdf:pdf},
issn = {0031-8949},
journal = {Physica Scripta},
month = {dec},
pages = {014015},
title = {{New phenomena in variable-density Rayleigh–Taylor turbulence}},
url = {http://stacks.iop.org/1402-4896/2010/i=T142/a=014015?key=<KEY>},
volume = {T142},
year = {2010}
}
@article{Young2001,
author = {<NAME>. and <NAME>. and <NAME> <NAME>.},
doi = {10.1017/S0022112001005870},
file = {:home/maxhutch/Documents/Mendeley Desktop//Young et al. - 2001 - On the miscible Rayleigh–Taylor instability two and three dimensions.pdf:pdf},
issn = {0022-1120},
journal = {Journal of Fluid Mechanics},
month = {oct},
pages = {377--408},
title = {{On the miscible Rayleigh–Taylor instability: two and three dimensions}},
url = {http://www.journals.cambridge.org/abstract{\_}S0022112001005870},
volume = {447},
year = {2001}
}
@article{Ramaprabhu2006,
author = {<NAME>. and <NAME> <NAME> <NAME>.},
doi = {10.1103/PhysRevE.74.066308},
file = {:home/maxhutch/Documents/Mendeley Desktop/Ramaprabhu et al. - 2006 - Limits of the potential flow approach to the single-mode Rayleigh-Taylor problem.pdf:pdf},
issn = {1539-3755},
journal = {Physical Review E},
month = {dec},
number = {6},
pages = {066308},
title = {{Limits of the potential flow approach to the single-mode Rayleigh-Taylor problem}},
url = {http://link.aps.org/doi/10.1103/PhysRevE.74.066308},
volume = {74},
year = {2006}
}
@article{Glimm1991,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//<NAME> - 1991 - The renormalization group dynamics of chaotic mixing of unstable interfaces.pdf:pdf},
journal = {Physics of Fluids A: Fluid Dynamics},
number = {May 2013},
pages = {1333--1335},
title = {{The renormalization group dynamics of chaotic mixing of unstable interfaces}},
url = {http://link.aip.org/link/?PFADEB/3/1333/1},
year = {1991}
}
@article{Liu2012,
author = {<NAME>. and <NAME>. and <NAME>. and <NAME>.},
doi = {10.1063/1.3702063},
file = {::},
issn = {1070664X},
journal = {Physics of Plasmas},
number = {4},
pages = {042705},
title = {{Nonlinear saturation amplitudes in classical Rayleigh-Taylor instability at arbitrary Atwood numbers}},
url = {http://link.aip.org/link/PHPAEN/v19/i4/p042705/s1{\&}Agg=doi},
volume = {19},
year = {2012}
}
@article{Chen2011a,
author = {Chen, <NAME>.},
doi = {10.1016/j.proci.2010.09.012},
file = {::},
issn = {15407489},
journal = {Proceedings of the Combustion Institute},
keywords = {combustion models,direct numerical simulation,dns,high-performance computing,turbulent},
number = {1},
pages = {99--123},
publisher = {Elsevier Inc.},
title = {{Petascale direct numerical simulation of turbulent combustion—fundamental insights towards predictive models}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S1540748910003962},
volume = {33},
year = {2011}
}
@article{Youngs1991,
author = {Youngs, DL},
file = {:home/maxhutch/Documents/Mendeley Desktop//Youngs - 1991 - Three‐dimensional numerical simulation of turbulent mixing by Rayleigh–Taylor instability.pdf:pdf},
journal = {Physics of Fluids A: Fluid Dynamics},
number = {May 2013},
pages = {1312--1320},
title = {{Three‐dimensional numerical simulation of turbulent mixing by Rayleigh–Taylor instability}},
url = {http://link.aip.org/link/?PFADEB/3/1312/1},
year = {1991}
}
@article{Gocharov2012,
author = {Gocharov, V and <NAME>},
file = {::},
journal = {LLNL Report LLNLTR-562104},
pages = {22----24},
title = {{Panel 3 Report : Implosion Hydrodynamics}},
year = {2012}
}
@article{Linden1973,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Linden - 1973 - On the structure of salt fingers.pdf:pdf},
journal = {Deep Sea Research and Oceanographic Abstracts},
number = {November 1972},
title = {{On the structure of salt fingers}},
url = {http://www.sciencedirect.com/science/article/pii/0011747173900570},
volume = {20},
year = {1973}
}
@article{Livescu2011,
author = {<NAME> <NAME>},
doi = {10.1088/1742-6596/318/8/082007},
file = {:home/maxhutch/Documents/Mendeley Desktop/Livescu, <NAME> - 2011 - Direct Numerical Simulations of Rayleigh-Taylor instability.pdf:pdf},
issn = {1742-6596},
journal = {Journal of Physics: Conference Series},
month = {dec},
number = {8},
pages = {082007},
title = {{Direct Numerical Simulations of Rayleigh-Taylor instability}},
url = {http://stacks.iop.org/1742-6596/318/i=8/a=082007?key=<KEY>},
volume = {318},
year = {2011}
}
@article{Read1984,
author = {<NAME>.},
doi = {10.1016/0167-2789(84)90513-X},
file = {:home/maxhutch/Documents/Mendeley Desktop/Read - 1984 - Experimental investigation of turbulent mixing by Rayleigh-Taylor instability.pdf:pdf},
issn = {01672789},
journal = {Physica D: Nonlinear Phenomena},
month = {jul},
number = {1-3},
pages = {45--58},
title = {{Experimental investigation of turbulent mixing by Rayleigh-Taylor instability}},
url = {http://linkinghub.elsevier.com/retrieve/pii/016727898490513X},
volume = {12},
year = {1984}
}
@article{Tait1971,
author = {<NAME> and Howe, MR},
file = {:home/maxhutch/Documents/Mendeley Desktop//Tait, Howe - 1971 - Thermohaline staircase.pdf:pdf},
title = {{Thermohaline staircase}},
url = {http://www.nature.com/nature/journal/v231/n5299/abs/231178a0.html},
year = {1971}
}
@article{Huang2007,
author = {<NAME> and {<NAME>}, Antonio and Atherton, Timothy and Bird, Matthew and Rosenblatt, Charles and Carl{\`{e}}<NAME>},
doi = {10.1103/PhysRevLett.99.204502},
file = {:home/maxhutch/Documents/Mendeley Desktop/Huang et al. - 2007 - Rayleigh-Taylor Instability Experiments with Precise and Arbitrary Control of the Initial Interface Shape.pdf:pdf},
issn = {0031-9007},
journal = {Physical Review Letters},
month = {nov},
number = {20},
pages = {204502},
title = {{Rayleigh-Taylor Instability Experiments with Precise and Arbitrary Control of the Initial Interface Shape}},
url = {http://link.aps.org/doi/10.1103/PhysRevLett.99.204502},
volume = {99},
year = {2007}
}
@article{Youngs2013,
author = {Youngs, DL},
journal = {Philosophical Transactions of the Royal {\ldots}},
number = {October},
title = {{The density ratio dependence of self-similar Rayleigh–Taylor mixing}},
url = {http://rsta.royalsocietypublishing.org/content/371/2003/20120173.short},
year = {2013}
}
@article{Wilson2002,
author = {<NAME>. and Andrews, <NAME>.},
doi = {10.1063/1.1445418},
file = {::},
issn = {10706631},
journal = {Physics of Fluids},
number = {3},
pages = {938},
title = {{Spectral measurements of Rayleigh–Taylor mixing at small Atwood number}},
url = {http://scitation.aip.org/content/aip/journal/pof2/14/3/10.1063/1.1445418},
volume = {14},
year = {2002}
}
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author = {<NAME>. and <NAME>.},
doi = {10.1098/rspa.1950.0023},
file = {:home/maxhutch/Documents/Mendeley Desktop/Proc. R. Soc. Lond. A-1950-Davies-375-90.pdf:pdf},
issn = {1364-5021},
journal = {Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences},
month = {feb},
number = {1062},
pages = {375--390},
title = {{The Mechanics of Large Bubbles Rising through Extended Liquids and through Liquids in Tubes}},
url = {http://rspa.royalsocietypublishing.org/cgi/doi/10.1098/rspa.1950.0023},
volume = {200},
year = {1950}
}
@techreport{Kelley2001,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Kelley - 2001 - Six questions about double-diffusive convection.pdf:pdf},
pages = {191--198},
title = {{Six questions about double-diffusive convection}},
url = {http://oai.dtic.mil/oai/oai?verb=getRecord{\&}metadataPrefix=html{\&}identifier=ADP013595},
year = {2001}
}
@article{Taylor1950,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Taylor - 1950 - The instability of liquid surfaces when accelerated in a direction perpendicular to their planes. I.pdf:pdf},
journal = {Proceedings of the Royal Society of {\ldots}},
title = {{The instability of liquid surfaces when accelerated in a direction perpendicular to their planes. I}},
url = {http://rspa.royalsocietypublishing.org/content/201/1065/192.short},
year = {1950}
}
@techreport{Fermi1953,
author = {<NAME> and <NAME>, John},
file = {::},
title = {{Taylor Instability at the Boundary of Two Incompressible Liquids}},
year = {1953}
}
@article{Duff1962,
author = {<NAME> and Harlow, FH and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Duff, Harlow, Hirt - 1962 - Effects of diffusion on interface instability between gases.pdf:pdf;:tmp/scitation.aip.org.proxy.uchicago.edu{\_}docserver{\_}fulltext{\_}aip{\_}journal{\_}pof1{\_}5{\_}4{\_}1.1706634.pdf:pdf},
journal = {Physics of Fluids},
pages = {417},
title = {{Effects of diffusion on interface instability between gases}},
volume = {5},
year = {1962}
}
@article{Ristorcelli2004,
author = {<NAME>. and <NAME>.},
doi = {10.1017/S0022112004008286},
file = {::},
issn = {0022-1120},
journal = {Journal of Fluid Mechanics},
month = {may},
pages = {213--253},
title = {{RayleighTaylor turbulence: self-similar analysis and direct numerical simulations}},
url = {http://www.journals.cambridge.org/abstract{\_}S0022112004008286},
volume = {507},
year = {2004}
}
@article{Snider1994,
author = {<NAME> and Andrews, MJ},
file = {::},
journal = {Physics of Fluids},
number = {November 1993},
pages = {0--10},
title = {{Rayleigh–Taylor and shear driven mixing with an unstable thermal stratification}},
url = {http://scitation.aip.org/content/aip/journal/pof2/6/10/10.1063/1.868065},
volume = {77843},
year = {1994}
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@article{Dimonte2004a,
author = {<NAME>},
doi = {10.1103/PhysRevE.69.056305},
file = {::},
issn = {1539-3755},
journal = {Physical Review E},
keywords = {initial-conditions},
mendeley-tags = {initial-conditions},
month = {may},
number = {5},
pages = {056305},
title = {{Dependence of turbulent Rayleigh-Taylor instability on initial perturbations}},
url = {http://link.aps.org/doi/10.1103/PhysRevE.69.056305},
volume = {69},
year = {2004}
}
@article{Sharp1984,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Sharp - 1984 - An overview of Rayleigh-Taylor instability.pdf:pdf},
journal = {Physica D: Nonlinear Phenomena},
pages = {3--18},
title = {{An overview of Rayleigh-Taylor instability}},
url = {http://www.sciencedirect.com/science/article/pii/0167278984905104},
year = {1984}
}
@article{Glimm1990,
author = {<NAME> <NAME> and <NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop//Glimm, Li, Menikoff - 1990 - A numerical study of bubble interactions in Rayleigh–Taylor instability for compressible fluids.pdf:pdf},
journal = {Physics of Fluids A: Fluid {\ldots}},
number = {May 2013},
pages = {2046--2054},
title = {{A numerical study of bubble interactions in Rayleigh–Taylor instability for compressible fluids}},
url = {http://link.aip.org/link/?PFADEB/2/2046/1},
volume = {2},
year = {1990}
}
@article{Glimm1988,
author = {<NAME> and Li, XL},
file = {:home/maxhutch/Documents/Mendeley Desktop//Glimm, Li - 1988 - Validation of the Sharp–Wheeler bubble merger model from experimental and computational data.pdf:pdf},
journal = {Physics of Fluids},
number = {May 2013},
title = {{Validation of the Sharp–Wheeler bubble merger model from experimental and computational data}},
url = {http://link.aip.org/link/?PFLDAS/31/2077/1},
year = {1988}
}
@article{Davies1950a,
author = {<NAME>. and <NAME>.},
doi = {10.1098/rspa.1950.0023},
file = {::},
issn = {1364-5021},
journal = {Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences},
month = {feb},
number = {1062},
pages = {375--390},
title = {{The Mechanics of Large Bubbles Rising through Extended Liquids and through Liquids in Tubes}},
url = {http://rspa.royalsocietypublishing.org/cgi/doi/10.1098/rspa.1950.0023},
volume = {200},
year = {1950}
}
@article{Xia2015,
author = {<NAME> <NAME> <NAME> <NAME> and <NAME>},
doi = {10.1016/j.ijheatmasstransfer.2015.01.015},
file = {::},
issn = {00179310},
journal = {International Journal of Heat and Mass Transfer},
pages = {158--166},
title = {{Effects of head loss on the growth of the Rayleigh–Taylor and the Richtmyer–Meshkov instabilities}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0017931015000228},
volume = {84},
year = {2015}
}
@article{Abarzhi2010,
abstract = {We review the theoretical developments in the field of Rayleigh-Taylor instabilities and turbulent mixing, discuss what is known and what is not known about the phenomenon, and outline the features of similarity of the turbulent mixing process. Based on the physical intuition and on the results of rigorous theoretical studies, we put forward some new ideas on how to grasp the essentials of the mixing process and consider the influence of momentum transport on the invariants and on scaling and statistical properties of the unsteady turbulent mixing.},
author = {<NAME>},
doi = {10.1098/rsta.2010.0020},
file = {:home/maxhutch/Documents/Mendeley Desktop/Abarzhi - 2010 - Review of theoretical modelling approaches of Rayleigh-Taylor instabilities and turbulent mixing.pdf:pdf},
issn = {1364-503X},
journal = {Philosophical transactions. Series A, Mathematical, physical, and engineering sciences},
month = {apr},
number = {1916},
pages = {1809--28},
pmid = {20211884},
title = {{Review of theoretical modelling approaches of Rayleigh-Taylor instabilities and turbulent mixing.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/20211884},
volume = {368},
year = {2010}
}
@article{Ramaprabhu2005,
author = {<NAME>. and <NAME> and <NAME>.},
doi = {10.1017/S002211200500488X},
file = {:home/maxhutch/Documents/Mendeley Desktop/Ramaprabhu, Dimonte, Andrews - 2005 - A numerical study of the influence of initial perturbations on the turbulent Rayleigh–Taylor ins.pdf:pdf},
issn = {0022-1120},
journal = {Journal of Fluid Mechanics},
keywords = {initial-conditions},
mendeley-tags = {initial-conditions},
month = {jul},
pages = {285--319},
title = {{A numerical study of the influence of initial perturbations on the turbulent Rayleigh–Taylor instability}},
url = {http://www.journals.cambridge.org/abstract{\_}S002211200500488X},
volume = {536},
year = {2005}
}
@article{Hicks2013,
author = {<NAME>. and <NAME>.},
doi = {10.1088/0004-637X/771/2/135},
file = {::},
issn = {0004-637X},
journal = {The Astrophysical Journal},
keywords = {color figures,general,hydrodynamics,instabilities,online-only material,supernovae,turbulence,white dwarfs},
month = {jul},
number = {2},
pages = {135},
title = {{Gravitationally Unstable Flames: Rayleigh-Taylor Stretching Versus Turbulent Wrinkling}},
url = {http://stacks.iop.org/0004-637X/771/i=2/a=135?key=crossref.51e112c29ab3ca5d5a6c08fb477f4689},
volume = {771},
year = {2013}
}
@article{Hide1955,
author = {<NAME>},
doi = {10.1017/S030500410003005X},
file = {:home/maxhutch/Documents/Mendeley Desktop/Hide - 1955 - The character of the equilibrium of an incompressible heavy viscous fluid of variable density an approximate theory.pdf:pdf},
isbn = {0305004100030},
issn = {0305-0041},
journal = {Mathematical Proceedings of the Cambridge Philosophical Society},
pages = {179},
title = {{The character of the equilibrium of an incompressible heavy viscous fluid of variable density: an approximate theory}},
volume = {51},
year = {1955}
}
@article{Oron2001,
author = {<NAME>. and <NAME>. and <NAME>.},
doi = {10.1063/1.1362529},
file = {:home/maxhutch/Documents/Mendeley Desktop/Oron et al. - 2001 - Dimensionality dependence of the Rayleigh–Taylor and Richtmyer–Meshkov instability late-time scaling laws.pdf:pdf},
issn = {1070664X},
journal = {Physics of Plasmas},
number = {6},
pages = {2883},
title = {{Dimensionality dependence of the Rayleigh–Taylor and Richtmyer–Meshkov instability late-time scaling laws}},
url = {http://scitation.aip.org/content/aip/journal/pop/8/6/10.1063/1.1362529},
volume = {8},
year = {2001}
}
@article{Dimonte2004,
author = {<NAME> <NAME> <NAME> <NAME> <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and <NAME>. and Ricker, P. and <NAME>. and <NAME>. and <NAME>. and <NAME>.-N. and <NAME>.},
doi = {10.1063/1.1688328},
file = {:home/maxhutch/Documents/Mendeley Desktop//Dimonte et al. - 2004 - A comparative study of the turbulent Rayleigh–Taylor instability using high-resolution three-dimensional numer.pdf:pdf},
issn = {10706631},
journal = {Physics of Fluids},
number = {5},
pages = {1668},
title = {{A comparative study of the turbulent Rayleigh–Taylor instability using high-resolution three-dimensional numerical simulations: The Alpha-Group collaboration}},
url = {http://link.aip.org/link/PHFLE6/v16/i5/p1668/s1{\&}Agg=doi},
volume = {16},
year = {2004}
}
@article{Dimonte2000,
author = {<NAME> <NAME>},
doi = {10.1063/1.870309},
file = {:home/maxhutch/Documents/Mendeley Desktop//Dimonte, Schneider - 2000 - Density ratio dependence of Rayleigh–Taylor mixing for sustained and impulsive acceleration histories.pdf:pdf},
issn = {10706631},
journal = {Physics of Fluids},
number = {2},
pages = {304},
title = {{Density ratio dependence of Rayleigh–Taylor mixing for sustained and impulsive acceleration histories}},
url = {http://link.aip.org/link/PHFLE6/v12/i2/p304/s1{\&}Agg=doi},
volume = {12},
year = {2000}
}
@article{Linden2006,
author = {<NAME>. and <NAME> <NAME>.},
doi = {10.1017/S0022112094000777},
file = {:home/maxhutch/Documents/Mendeley Desktop//Linden, Redondo, Youngs - 1994 - Molecular mixing in Rayleigh–Taylor instability.pdf:pdf},
issn = {0022-1120},
journal = {Journal of Fluid Mechanics},
month = {apr},
number = {-1},
pages = {97},
title = {{Molecular mixing in Rayleigh–Taylor instability}},
url = {http://www.journals.cambridge.org/abstract{\_}S0022112094000777},
volume = {265},
year = {1994}
}
@techreport{Fermi1951,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Fermi - 1951 - Taylor Instability of Incompressible Liquids.pdf:pdf},
title = {{Taylor Instability of Incompressible Liquids}},
year = {1951}
}
@book{Ramaprabhu2004a,
author = {<NAME>. and <NAME>.},
booktitle = {Journal of Fluid Mechanics},
doi = {10.1017/S0022112003007419},
file = {:home/maxhutch/Documents/Mendeley Desktop/Ramaprabhu, Andrews - 2004 - Experimental investigation of RayleighTaylor mixing at small Atwood numbers.pdf:pdf},
isbn = {0022112003007},
issn = {0022-1120},
month = {mar},
pages = {233--271},
title = {{Experimental investigation of RayleighTaylor mixing at small Atwood numbers}},
url = {http://www.journals.cambridge.org/abstract{\_}S0022112003007419},
volume = {502},
year = {2004}
}
@article{Livescu2013,
abstract = {A tentative review is presented of various approaches for numerical simulations of two-fluid gaseous mixtures at high density ratios, as they have been applied to the Rayleigh-Taylor instability (RTI). Systems exhibiting such RTI behaviour extend from atomistic sizes to scales where the continuum approximation becomes valid. Each level of description can fit into a hierarchy of theoretical models and the governing equations appropriate for each model, with their assumptions, are presented. In particular, because the compressible to incompressible limit of the Navier-Stokes equations is not unique and understanding compressibility effects in the RTI critically depends on having the appropriate basis for comparison, two relevant incompressible limits are presented. One of these limits has not been considered before. Recent results from RTI simulations, spanning the levels of description presented, are reviewed in connection to the material mixing problem. Owing to the computational limitations, most in-depth RTI results have been obtained for the incompressible case. Two such results, concerning the asymmetry of the mixing and small-scale anisotropy anomaly, as well as the possibility of a mixing transition in the RTI, are surveyed. New lines for further investigation are suggested and it is hoped that bringing together such diverse levels of description may provide new ideas and increased motivation for studying such flows.},
author = {<NAME>},
doi = {10.1098/rsta.2012.0185},
file = {:home/maxhutch/Documents/Mendeley Desktop/Livescu - 2013 - Numerical simulations of two-fluid turbulent mixing at large density ratios and applications to the Rayleigh-Taylor ins.pdf:pdf},
issn = {1364-503X},
journal = {Philosophical transactions. Series A, Mathematical, physical, and engineering sciences},
month = {nov},
number = {2003},
pages = {20120185},
pmid = {24146007},
title = {{Numerical simulations of two-fluid turbulent mixing at large density ratios and applications to the Rayleigh-Taylor instability.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/24146007},
volume = {371},
year = {2013}
}
@article{Glimm2013,
author = {<NAME>},
file = {:home/maxhutch/Documents/Mendeley Desktop/Glimm, Sharp - 2013 - New directions for Rayleigh–Taylor mixing.pdf:pdf},
journal = {Philosophical transactions. Series A, Mathematical, physical, and engineering sciences},
number = {October},
title = {{New directions for Rayleigh–Taylor mixing}},
url = {http://rsta.royalsocietypublishing.org/content/371/2003/20120183.short},
year = {2013}
}
@article{Dimonte2005,
author = {<NAME> <NAME>. and <NAME>. and <NAME>.},
doi = {10.1063/1.1871952},
file = {:home/maxhutch/Documents/Mendeley Desktop//Dimonte et al. - 2005 - Recent advances in the turbulent Rayleigh–Taylor instability.pdf:pdf},
issn = {1070664X},
journal = {Physics of Plasmas},
number = {5},
pages = {056301},
title = {{Recent advances in the turbulent Rayleigh–Taylor instability}},
url = {http://link.aip.org/link/PHPAEN/v12/i5/p056301/s1{\&}Agg=doi},
volume = {12},
year = {2005}
}
@inproceedings{hutchinson2016efficiency,
  title={Efficiency of High Order Spectral Element Methods on Petascale Architectures},
  author={<NAME> and <NAME> and <NAME> and <NAME> Parsani, Matteo and <NAME>},
  booktitle={International Conference on High Performance Computing},
  pages={449--466},
  year={2016},
  organization={Springer International Publishing}
}

