<jupyter_start><jupyter_text>In class group activity Convert the cDNA into amino acid sequence. **Instructions*** Work in groups of 2-3 **Names:** --- AssignmentConvert the cDNA sequence from last week into its amino acid sequence. Think about what constitutes a protein sequence, it should start with the methionine amino acid (M) and end with the STOP (`-`) codon. Use the following dictonary for conversion of DNA codon to amino acid:<jupyter_code>amino_acids = {
    'ATA':'I', 'ATC':'I', 'ATT':'I', 'ATG':'M',
    'ACA':'T', 'ACC':'T', 'ACG':'T', 'ACT':'T',
    'AAC':'N', 'AAT':'N', 'AAA':'K', 'AAG':'K',
    'AGC':'S', 'AGT':'S', 'AGA':'R', 'AGG':'R',
    'CTA':'L', 'CTC':'L', 'CTG':'L', 'CTT':'L',
    'CCA':'P', 'CCC':'P', 'CCG':'P', 'CCT':'P',
    'CAC':'H', 'CAT':'H', 'CAA':'Q', 'CAG':'Q',
    'CGA':'R', 'CGC':'R', 'CGG':'R', 'CGT':'R',
    'GTA':'V', 'GTC':'V', 'GTG':'V', 'GTT':'V',
    'GCA':'A', 'GCC':'A', 'GCG':'A', 'GCT':'A',
    'GAC':'D', 'GAT':'D', 'GAA':'E', 'GAG':'E',
    'GGA':'G', 'GGC':'G', 'GGG':'G', 'GGT':'G',
    'TCA':'S', 'TCC':'S', 'TCG':'S', 'TCT':'S',
    'TTC':'F', 'TTT':'F', 'TTA':'L', 'TTG':'L',
    'TAC':'Y', 'TAT':'Y', 'TAA':'-', 'TAG':'-',
    'TGC':'C', 'TGT':'C', 'TGA':'-', 'TGG':'W'}<jupyter_output><empty_output><jupyter_text>Note that we use `-` to represent a STOP codon. Also note that there are three possible frames that you can consider from the 5' to 3' direction of the sequence. We will ignore the opposite strand information for now (3' to 5'), just know that when converting from DNA to amino acid sequence there are six possible frames altoghether.  What do I mean by frame? Consider the following sequence: "AATATTAGA..."Frame 1:|position: | 012 	| 345 	| 678 	||-----	|-----	|-----	|-----	||**seq:**| AAT 	| ATT 	| AGA 	|First codon is AAT = NFrame 2:|position: | 0 	| 123 	| 456 	| 78 	||---	|---	|-----	|-----	|----	||**seq:**| A 	| ATA 	| TTA 	| GA 	|  First codon is ATA = IFrame 3: |position: | 01 	| 234 	| 567 	| 8 	||----	|----	|-----	|-----	|---	||**seq:**| AA 	| TAT 	| TAG 	| A 	|  First codon is TAT = Y **Example of a protein sequence in string format**: "MYKLAIMYLRM-" --- **Part1:** Given the cDNA variable you created in last week's class assignment:<jupyter_code>cDNA = "AATATTAGAGTCTCAACCCCCAATAAATATAGGACTGGAGATGTCTGAGGCTCATTCTGCCCTCGAGCCCACCGGGAACGAAAGAGAAGCTCTATCTCCCCTCCAGGAGCCCAGCTATGAACTCCTTCTCCACAAGCGCCTTCGGTCCAGTTGCCTTCTCCCTGGGGCTGCTCCTGGTGTTGCCTGCTGCCTTCCCTGCCCCAGTACCCCCAGGAGAAGATTCCAAAGATGTAGCCGCCCCACACAGACAGCCACTCACCTCTTCAGAACGAATTGACAAACAAATTCGGTACATCCTCGACGGCATCTCAGCCCTGAGAAAGGAGACATGTAACAAGAGTAACATGTGTGAAAGCAGCAAAGAGGCACTGGCAGAAAACAACCTGAACCTTCCAAAGATGGCTGAAAAAGATGGATGCTTCCAATCTGGATTCAATGAGGAGACTTGCCTGGTGAAAATCATCACTGGTCTTTTGGAGTTTGAGGTATACCTAGAGTACCTCCAGAACAGATTTGAGAGTAGTGAGGAACAAGCCAGAGCTGTGCAGATGAGTACAAAAGTCCTGATCCAGTTCCTGCAGAAAAAGGCAAAGAATCTAGATGCAATAACCACCCCTGACCCAACCACAAATGCCAGCCTGCTGACGAAGCTGCAGGCACAGAACCAGTGGCTGCAGGACATGACAACTCATCTCATTCTGCGCAGCTTTAAGGAGTTCCTGCAGTCCAGCCTGAGGGCTCTTCGGCAAATGTAGCATGGGCACCTCAGATTGTTGTTGTTAATGGGCATTCCTTCTTCTGGTCAGAAACCTGTCCACTGGGCACAGAACTTATGTTGTTCTCTATGGAGAACTAAAAGTATGAGCGTTAGGACACTATTTTAATTATTTTTAATTTATTAATATTTAAATATGTGAAGCTGAGTTAATTTATGTAAGTCATATTTATATTTTTAAGAAGTACCACTTGAAACATTTTATGTATTAGTTTTGAAATAATAATGGAAAGTGGCTATGCAGTTTGAATATCCTTTGTTTCAGAGCCAGATCATTTCTTGGAAAGTGTAGGCTTACCTCAAATAAATGGCTAACTTATACATATTTTTAAAGAAATATTTATATTGTATTTATATAATGTATAAATGGTTTTTATACCAATAAATGGCATTTT"<jupyter_output><empty_output>
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