/*
 * The MIT License
 *
 * Copyright (c) 2013 The Broad Institute
 *
 * Permission is hereby granted, free of charge, to any person obtaining a copy
 * of this software and associated documentation files (the "Software"), to deal
 * in the Software without restriction, including without limitation the rights
 * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
 * copies of the Software, and to permit persons to whom the Software is
 * furnished to do so, subject to the following conditions:
 *
 * The above copyright notice and this permission notice shall be included in
 * all copies or substantial portions of the Software.
 *
 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
 * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
 * THE SOFTWARE.
 */
package net.sf.samtools.seekablestream;

import net.sf.samtools.seekablestream.SeekableFileStream;
import org.broad.tribble.readers.AsciiLineReader;
import org.broad.tribble.readers.PositionalBufferedStream;
import org.testng.Assert;
import org.testng.annotations.Test;

import java.io.File;

/**
 * Created by IntelliJ IDEA.
 * User: jrobinso
 * Date: Dec 20, 2009
 * Time: 11:13:19 AM
 * To change this template use File | Settings | File Templates.
 */
public class SeekableFileStreamTest {

    @Test
    public void testSeek() throws Exception {
        String expectedLine = "ccccccccc";
        File testFile = new File("testdata/tribble/seekTest.txt");
        SeekableFileStream is = new SeekableFileStream(testFile);
        is.seek(20);
        AsciiLineReader reader = new AsciiLineReader(new PositionalBufferedStream(is));
        String nextLine = reader.readLine();
        Assert.assertEquals(expectedLine, nextLine);
        reader.close();
    }
}

@@ -1207,150 +1207,31 @@
 ols.
-seekablestream.SeekableFileStream;%0Aimport org.broad.tribble.readers.AsciiLineReader;%0Aimport org.broad.tribble.readers.PositionalBufferedStream
+util.BufferedLineReader
 ;%0Aim
@@ -1776,21 +1776,24 @@
         
-Ascii
+Buffered
 LineRead
@@ -1812,57 +1812,30 @@
 new 
-AsciiLineReader(new PositionalBufferedStream
+BufferedLineReader
 (is)
-)
 ;%0A  

Fix unit test that depended on tribble not to do so.