@@ -0,0 +1,1318 @@
+/*--------------------------------------------------------------------------%0D%0A *  Copyright 2010 utgenome.org%0D%0A *%0D%0A *  Licensed under the Apache License, Version 2.0 (the %22License%22);%0D%0A *  you may not use this file except in compliance with the License.%0D%0A *  You may obtain a copy of the License at%0D%0A *%0D%0A *     http://www.apache.org/licenses/LICENSE-2.0%0D%0A *%0D%0A *  Unless required by applicable law or agreed to in writing, software%0D%0A *  distributed under the License is distributed on an %22AS IS%22 BASIS,%0D%0A *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.%0D%0A *  See the License for the specific language governing permissions and%0D%0A *  limitations under the License.%0D%0A *--------------------------------------------------------------------------*/%0D%0A//--------------------------------------%0D%0A// utgb-core Project%0D%0A//%0D%0A// Gap.java%0D%0A// Since: Aug 23, 2010%0D%0A//%0D%0A//--------------------------------------%0D%0Apackage org.utgenome.gwt.utgb.client.bio;%0D%0A%0D%0A/**%0D%0A * Gap of paired-end, mate-pair reads%0D%0A * %0D%0A * @author leo%0D%0A * %0D%0A */%0D%0Apublic class Gap extends Interval %7B%0D%0A%0D%0A%09private static final long serialVersionUID = 1L;%0D%0A%0D%0A%09public Gap() %7B%0D%0A%09%7D%0D%0A%0D%0A%09public Gap(int start, int end) %7B%0D%0A%09%09super(start, end);%0D%0A%09%7D%0D%0A%0D%0A%09@Override%0D%0A%09public void accept(OnGenomeDataVisitor visitor) %7B%0D%0A%09%09visitor.visitGap(this);%0D%0A%09%7D%0D%0A%0D%0A%7D%0D%0A

add Gap class for mate-pair reads