"""
these are the studies that may go into the next round of synthesis
"""

studytreelist=[


"2862_6649", # Scuticociliatia (Ciliates). Gao et al. 2014. MPE					## currently unrooted
"2863_6650", # Oligohymenophorea (Ciliates). Gao et al. 2013. MPE				## currently unrooted
"2739_6601", # blue-green algae (Cyanobacteria). Schirrmeister et al. BMC Evol. Biol. 2011.
"2892_6700", # blue-green algae (Cyanobacteria). Rigonato et al. Env. Microbio. 2013.		## currently unrooted
"2891_6699", # blue-green algae (Cyanobacteria). Rigonato et al. FEMS Microbiol Eco 2012.	## currently unrooted
"2884_6688", # Mycobacterium. Sassi and Drancourt. BMC Genomics 2014.
"2744_6343", # Dinophyceae. Haywood et al. J Phycol. 2003.
"2882_6682", # Mycobacterium. Mendum et al. BMC Genomics 2014
"2770_6417", # Plasmodium. Ollomo et al. PLoS Pathogens. 2009					## currently unrooted
"2765_6399", # Bosminidae. Taylor et al. Limnology and Oceano. 2002.
"2749_6353", # Chlorophyta. Tartar et al. 2002
"2886_6694", # Holozoa. 
"2792_6478", # Diatom
"2790_6476", # Moraxella
"2888_6697", # Rhizobium
"2885_6690", # Life
"2885_6692", #	Life
"2787_6704", #	Bacteria
"2759_6374", #	Apicomplexa
"2883_6686", #	Bacillus marcescens
"2793_6705", #	Cercozoa
"2748_6351", #	Sphacelariales
"2889_6698", #	Bacteria
"2745_6345", #	Dinophysis
"2775_6432", #	Opisthokonta
"2750_6355", #	Botryococcus
"2895_6706", # 	Bacteria
"2895_6707", #	Bacteria
"2880_6676",	#Stramenopiles
"2484_6607",	#Amoebozoa
"2557_6631", #	Dinoflagellata
"2557_6639", #	Dinoflagellata
"2737_6322", #	Nostocales
"2738_6323", #	Oscillatoriales
"2738_6324", #	Oscillatoriales
"310_259", #	Eukaryota
"2760_6375",	#Dinoflagellates
"2846_6608",	#Bacteriodetes
"2847_6609",#	Eukaryota
"2847_6611", #	Eukaryota
"2925_2925", #	Eukaryota
"2618_6130", #	Dinoflagellata
"2927_6760", #	Pseudokeronopsidae
"2772_6421", #	Thalassiosirales
"2928_6761", #Cymbellales

]

@@ -153,34 +153,24 @@
 . MPE%09%09%09%09%09##
- currently
  unrooted%0A%222
@@ -239,32 +239,42 @@
 E%09%09%09%09## 
-currently unroot
+unrooted; no ingroup defin
 ed%0A%222739
@@ -450,32 +450,42 @@
 13.%09%09## 
-currently unroot
+unrooted; no ingroup defin
 ed%0A%222891
@@ -572,32 +572,42 @@
 012.%09## 
-currently unroot
+unrooted; no ingroup defin
 ed%0A%222884
@@ -670,16 +670,41 @@
 cs 2014.
+%09%09%09%09## no ingroup defined
 %0A%222744_6
@@ -816,16 +816,42 @@
 ics 2014
+%09%09%09%09%09## no ingroup defined
 %0A%222770_6
@@ -916,24 +916,34 @@
 %09## 
-currently unroot
+unrooted; no ingroup defin
 ed%0A%22
@@ -1009,16 +1009,41 @@
 o. 2002.
+%09%09%09%09## no ingroup defined
 %0A%222749_6
@@ -1082,16 +1082,17 @@
 l. 2002%0A
+%0A
 %222886_66
@@ -1111,55 +1111,242 @@
 oa. 
-%0A%222792_6478%22, # Diatom%0A%222790_6476%22, # Moraxella
+Scheel and Hausdorf. 2014. MPE%09%09%09%09%09%09## no ingroup defined%0A%222792_6478%22, # Diatom. Ruck and Theriot. 2011. Protist%09%09%09%09%09%09## no ingroup defined%0A%222790_6476%22, # Moraxella. Angelos et al. 2007. Syst. Evol. Microbiol.%09%09%09%09## no ingroup defined
 %0A%2228

edit to new microbes