import numpy as np

from scipy.spatial import distance
from sklearn.cluster import DBSCAN
from sklearn import metrics

from os import getcwd
##############################################################################
# Generate sample data
#centers = [[1, 1], [-1, -1], [1, -1]]
#X, labels_true = make_blobs(n_samples=750, centers=centers, cluster_std=0.4)
fileNum = '00'
dataDir = getcwd()+ '/../data/path-image-1' + str(fileNum) + '.tif/'

def labels(featureNum):
  if featureNum == 0:
    label = "Area"
  elif featureNum == 1:
    label = "Perimeter"
  elif featureNum == 2:
    label = "Compactness"
  elif featureNum == 3:
    label = "Asymmetry"
  elif featureNum == 4:
    label = "BoundaryIndex"
  elif featureNum == 5:
    label = "Compactness"
  elif featureNum == 6:
    label = "Contrast"
  elif featureNum == 7:
    label = "Dissimilarity"
  elif featureNum == 8:
    label = "Angular Second moment"
  elif featureNum == 9:
    label = "Energy"
  elif featureNum == 10:
    label = "Homegeneity"
  return label



def load_data(fi):
  fName = dataDir + fi
  fp = open(fName)
  X = np.loadtxt(fp)
  fp.close()
  return X
  

def start_dbscan(fi,fo,featureIndexList=[0,1]):
##############################################################################
    # Compute similarities
    X = load_data(fi)
    D = distance.squareform(distance.pdist(X))
    S = 1 - (D / np.max(D))
    #print X
    #print labels_true

    ##############################################################################
    # Compute DBSCAN
    db = DBSCAN(eps=0.3, min_samples=10).fit(S)
    core_samples = db.core_sample_indices_
    labels = db.labels_

    # Number of clusters in labels, ignoring noise if present.
    n_clusters_ = len(set(labels)) - (1 if -1 in labels else 0)

    print 'Estimated number of clusters: %d' % n_clusters_
    if n_clusters_ ==0:
        return
    #print "Homogeneity: %0.3f" % metrics.homogeneity_score(labels_true, labels)
    #print "Completeness: %0.3f" % metrics.completeness_score(labels_true, labels)
    #print "V-measure: %0.3f" % metrics.v_measure_score(labels_true, labels)
    #print "Adjusted Rand Index: %0.3f" % \
    #    metrics.adjusted_rand_score(labels_true, labels)
    #print "Adjusted Mutual Information: %0.3f" % \
    #    metrics.adjusted_mutual_info_score(labels_true, labels)
    print ("Silhouette Coefficient: %0.3f" %
           metrics.silhouette_score(D, labels, metric='precomputed'))

    ##############################################################################
    # Plot result
    import pylab as pl
    from itertools import cycle

    pl.close('all')
    pl.figure(1)
    pl.clf()

    # Black removed and is used for noise instead.
    colors = cycle('bgrcmybgrcmybgrcmybgrcmy')
    for k, col in zip(set(labels), colors):
        if k == -1:
            # Black used for noise.
            col = 'k'
            markersize = 6
        class_members = [index[0] for index in np.argwhere(labels == k)]
        cluster_core_samples = [index for index in core_samples
                                if labels[index] == k]
        for index in class_members:
            x = X[index]
            if index in core_samples and k != -1:
                markersize = 14
            else:
                markersize = 6
            pl.plot(x[0], x[1], 'o', markerfacecolor=col,
                    markeredgecolor='k', markersize=markersize)

    pl.title('Estimated number of clusters: %d' % n_clusters_)
    pl.savefig(dataDir + "dbscan/"+fo )
    pl.xlabel(labels(featureIndexList[0]))
    pl.ylabel(labels(featureIndexList[1]))
 
    pl.ion()
#for testing
#start_dbscan("path-image-100.seg.000000.000000.csv","myfilter_test.png")
@@ -365,17 +365,17 @@
 Num = '0
-0
+1
 '%0AdataDi
@@ -3696,8 +3696,9 @@
 st.png%22)
+%0A

Update file for filenum 01