# -*- coding: utf-8 -*-
#
#  This file is part of Sequana software
#
#  Copyright (c) 2016 - Sequana Development Team
#
#  File author(s):
#      Thomas Cokelaer <thomas.cokelaer@pasteur.fr>
#
#  Distributed under the terms of the 3-clause BSD license.
#  The full license is in the LICENSE file, distributed with this software.
#
#  website: https://github.com/sequana/sequana
#  documentation: http://sequana.readthedocs.io
#
##############################################################################
"""simple summary class to handle summary data with metadata"""
import time
import os
import json

__all__ = ["Summary"]


class Summary(object):
    """

    .. doctest::

        >>> s = Summary("test", "chr1", data={"mean": 1})
        >>> s.name
        sequana_summary_test
        >>> s.sample_name
        chr1


    Here, we prefix the name with the "sequana_summary" tag. Then,
    we populate the sequana version and date automatically. The final
    summary content is then accessible as a dictionary::

        >>> s.as_dict()
        {'data': {'mean': 1},
         'date': 'Thu Jan 18 22:09:13 2018',
         'name': 'sequana_summary_test',
         'sample_name': 'chr1',
         'version': '0.6.3.post1'}

    You can also populate a description dictionary that will provide a
    description for the keys contained in the *data* field. For instance,
    here, the data dictionary contains only one obvious field (mean), we could
    provide a description::

        s.data_description = {"mean": "a dedicated description for the mean"}

    A more general description can also be provided::

        s.description = "bla bla bla"

    """
    def __init__(self, name, sample_name="undefined", data={}):

        if os.path.exists(name):
            with open(name, "r") as fin:
                data = json.loads(fin.read())
                self._name = data["name"]
                self.description = data["description"]
                self.sample_name = data["sample_name"]
                self.data = data["data"]

        else:
            name = name.strip()
            assert len(name.split()) == 1, "no space allowed in the name"
            assert isinstance(data, dict), "data must be a dictionary"
            self._name = name
            self.description = ""
            self.sample_name = sample_name
            self.data = data

    def as_dict(self):
        return {
            "name": self.name,
            "sample_name": self.sample_name,
            "version": self.version,
            "date": self.date,
            "data": self.data,
            "description": self.description,
            "data_description": self.data_description,
    }

    def to_json(self, filename):
        import json
        with open(filename, "w") as fh:
            json.dump(self.as_dict(), fh, indent=4, sort_keys=True)

    @property
    def date(self):
        return time.asctime()

    @property
    def name(self):
        return "sequana_summary_" + self._name

    @property
    def version(self):
        from sequana import version
        return version

    @property
    def data_description(self):
        d = {}
        for k in self.data.keys():
            d[k] = self._data_description.get(k, None)
        return d

    @data_description.setter
    def data_description(self, desc):
        self._data_description = {}
        assert isinstance(desc, dict), "data_description must be a dictionary"
        for k,v in desc.items():
            if k not in self.data.keys():
                raise KeyError("{} not a key found in your data dictionary")
            else:
                self._data_description[k] = v

@@ -1939,16 +1939,82 @@
 ption%22%5D%0A
+                self._data_description = data%5B%22data_description%22%5D%0A
         
@@ -2357,16 +2357,56 @@
 on = %22%22%0A
+            self._data_description = %7B%7D%0A
         

add missing field