@@ -0,0 +1,517 @@
+#!/usr/bin/env python%0A%0Afrom nipype.interfaces.freesurfer import ReconAll, MRIsCombine%0A%0Areconall = ReconAll()%0Areconall.inputs.subject_id = 'klb'%0Areconall.inputs.directive = 'all'%0Areconall.inputs.subjects_dir = '/home/data/nbc/3dbrain/'%0Areconall.inputs.T1_files = '/home/data/nbc/3dbrain/klb_brain.nii.gz'%0Areconall.inputs.openmp = 4%0Areconall.run()%0A%0A# TODO: Create nipype mris_convert --combinesurfs interface%0Amris = MRIsCombine()%0Amris.inputs.in_files = %5B'rh.pial', 'lh.pial'%5D%0Amris.inputs.out_file = 'bh.stl'%0Amris.run()%0A

Create run_pipeline.py