# Copyright 2020 - 2021 MONAI Consortium
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#     http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.


import math
from typing import Sequence, Union

import numpy as np
import torch
import torch.nn as nn

from monai.networks.layers import Conv
from monai.utils import ensure_tuple_rep, optional_import
from monai.utils.module import look_up_option

Rearrange, _ = optional_import("einops.layers.torch", name="Rearrange")
SUPPORTED_EMBEDDING_TYPES = {"conv", "perceptron"}


class PatchEmbeddingBlock(nn.Module):
    """
    A patch embedding block, based on: "Dosovitskiy et al.,
    An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale <https://arxiv.org/abs/2010.11929>"

    Example::

        >>> from monai.networks.blocks import PatchEmbeddingBlock
        >>> PatchEmbeddingBlock(in_channels=4, img_size=32, patch_size=8, hidden_size=32, num_heads=4, pos_embed="conv")

    """

    def __init__(
        self,
        in_channels: int,
        img_size: Union[Sequence[int], int],
        patch_size: Union[Sequence[int], int],
        hidden_size: int,
        num_heads: int,
        pos_embed: str,
        dropout_rate: float = 0.0,
        spatial_dims: int = 3,
    ) -> None:
        """
        Args:
            in_channels: dimension of input channels.
            img_size: dimension of input image.
            patch_size: dimension of patch size.
            hidden_size: dimension of hidden layer.
            num_heads: number of attention heads.
            pos_embed: position embedding layer type.
            dropout_rate: faction of the input units to drop.
            spatial_dims: number of spatial dimensions.


        """

        super().__init__()

        if not (0 <= dropout_rate <= 1):
            raise ValueError("dropout_rate should be between 0 and 1.")

        if hidden_size % num_heads != 0:
            raise ValueError("hidden size should be divisible by num_heads.")

        self.pos_embed = look_up_option(pos_embed, SUPPORTED_EMBEDDING_TYPES)

        img_size = ensure_tuple_rep(img_size, spatial_dims)
        patch_size = ensure_tuple_rep(patch_size, spatial_dims)
        for m, p in zip(img_size, patch_size):
            if m < p:
                raise ValueError("patch_size should be smaller than img_size.")
            if self.pos_embed == "perceptron" and m % p != 0:
                raise ValueError("patch_size should be divisible by img_size for perceptron.")
        self.n_patches = np.prod([im_d // p_d for im_d, p_d in zip(img_size, patch_size)])
        self.patch_dim = in_channels * np.prod(patch_size)

        self.patch_embeddings: nn.Module
        if self.pos_embed == "conv":
            self.patch_embeddings = Conv[Conv.CONV, spatial_dims](
                in_channels=in_channels, out_channels=hidden_size, kernel_size=patch_size, stride=patch_size
            )
        elif self.pos_embed == "perceptron":
            # for 3d: "b c (h p1) (w p2) (d p3)-> b (h w d) (p1 p2 p3 c)"
            chars = (("h", "p1"), ("w", "p2"), ("d", "p3"))[:spatial_dims]
            from_chars = "b c " + " ".join(f"({k} {v})" for k, v in chars)
            to_chars = f"b ({' '.join([c[0] for c in chars])}) ({' '.join([c[1] for c in chars])} c)"
            axes_len = {f"p{i+1}": p for i, p in enumerate(patch_size)}
            self.patch_embeddings = nn.Sequential(
                Rearrange(f"{from_chars} -> {to_chars}", **axes_len), nn.Linear(self.patch_dim, hidden_size)
            )
        self.position_embeddings = nn.Parameter(torch.zeros(1, self.n_patches, hidden_size))
        self.cls_token = nn.Parameter(torch.zeros(1, 1, hidden_size))
        self.dropout = nn.Dropout(dropout_rate)
        self.trunc_normal_(self.position_embeddings, mean=0.0, std=0.02, a=-2.0, b=2.0)
        self.apply(self._init_weights)

    def _init_weights(self, m):
        if isinstance(m, nn.Linear):
            self.trunc_normal_(m.weight, mean=0.0, std=0.02, a=-2.0, b=2.0)
            if isinstance(m, nn.Linear) and m.bias is not None:
                nn.init.constant_(m.bias, 0)
        elif isinstance(m, nn.LayerNorm):
            nn.init.constant_(m.bias, 0)
            nn.init.constant_(m.weight, 1.0)

    def trunc_normal_(self, tensor, mean, std, a, b):
        # From PyTorch official master until it's in a few official releases - RW
        # Method based on https://people.sc.fsu.edu/~jburkardt/presentations/truncated_normal.pdf
        def norm_cdf(x):
            return (1.0 + math.erf(x / math.sqrt(2.0))) / 2.0

        with torch.no_grad():
            l = norm_cdf((a - mean) / std)
            u = norm_cdf((b - mean) / std)
            tensor.uniform_(2 * l - 1, 2 * u - 1)
            tensor.erfinv_()
            tensor.mul_(std * math.sqrt(2.0))
            tensor.add_(mean)
            tensor.clamp_(min=a, max=b)
            return tensor

    def forward(self, x):
        x = self.patch_embeddings(x)
        if self.pos_embed == "conv":
            x = x.flatten(2).transpose(-1, -2)
        embeddings = x + self.position_embeddings
        embeddings = self.dropout(embeddings)
        return embeddings

@@ -4057,78 +4057,8 @@
 e))%0A
-        self.cls_token = nn.Parameter(torch.zeros(1, 1, hidden_size))%0A
     

remove cls (#3475)