import clodius.tiles.bigwig as hgbi
import os.path as op
import numpy as np
import base64
import pytest


@pytest.mark.parametrize("engine", ["pybbi", "pybigwig"])
def test_bigwig_tiles(engine):
    filename = op.join(
        'data',
        'wgEncodeCaltechRnaSeqHuvecR1x75dTh1014IlnaPlusSignalRep2.bigWig'
    )

    mean_tile = hgbi.tiles(filename, ['x.0.0'])
    mean_mean_tile = hgbi.tiles(filename, ['x.0.0.mean'])
    min_tile = hgbi.tiles(filename, ['x.0.0.min'])
    max_tile = hgbi.tiles(filename, ['x.0.0.max'])
    std_tile = hgbi.tiles(filename, ['x.0.0.std'])

    assert mean_tile[0][1]['max_value'] == mean_mean_tile[0][1]['max_value']
    assert mean_tile[0][1]['max_value'] > min_tile[0][1]['max_value']
    assert max_tile[0][1]['max_value'] > mean_tile[0][1]['max_value']
    assert max_tile[0][1]['max_value'] > mean_tile[0][1]['max_value'] + \
        std_tile[0][1]['max_value']

    min_max_tile = hgbi.tiles(filename, ['x.0.0.minMax'])
    whisker_tile = hgbi.tiles(filename, ['x.0.0.whisker'])

    mean_val = np.frombuffer(
        base64.b64decode(mean_tile[0][1]['dense']),
        dtype=mean_tile[0][1]['dtype']
    )

    min_val = np.frombuffer(
        base64.b64decode(min_tile[0][1]['dense']),
        dtype=min_tile[0][1]['dtype']
    )

    max_val = np.frombuffer(
        base64.b64decode(max_tile[0][1]['dense']),
        dtype=max_tile[0][1]['dtype']
    )

    std_val = np.frombuffer(
        base64.b64decode(std_tile[0][1]['dense']),
        dtype=std_tile[0][1]['dtype']
    )

    min_max_val = np.frombuffer(
        base64.b64decode(min_max_tile[0][1]['dense']),
        dtype=min_max_tile[0][1]['dtype']
    )

    whisker_val = np.frombuffer(
        base64.b64decode(whisker_tile[0][1]['dense']),
        dtype=whisker_tile[0][1]['dtype']
    )

    assert min_max_val.shape[0] == 2 * mean_val.shape[0]
    assert np.allclose(min_max_val[::2], min_val, equal_nan=True)
    assert np.allclose(min_max_val[1::2], max_val, equal_nan=True)

    assert whisker_val.shape[0] == 4 * mean_val.shape[0]
    assert np.allclose(whisker_val[::4], min_val, equal_nan=True)
    assert np.allclose(whisker_val[1::4], max_val, equal_nan=True)
    assert np.allclose(whisker_val[2::4], mean_val, equal_nan=True)
    assert np.allclose(whisker_val[3::4], std_val, equal_nan=True)


def test_tileset_info():
    filename = op.join(
        'data',
        'wgEncodeCaltechRnaSeqHuvecR1x75dTh1014IlnaPlusSignalRep2.bigWig'
    )

    tileset_info = hgbi.tileset_info(filename)

    assert len(tileset_info['aggregation_modes']) == 4
    assert tileset_info['aggregation_modes']['mean']
    assert tileset_info['aggregation_modes']['min']
    assert tileset_info['aggregation_modes']['max']
    assert tileset_info['aggregation_modes']['std']

    assert len(tileset_info['range_modes']) == 2
    assert tileset_info['range_modes']['minMax']
    assert tileset_info['range_modes']['whisker']


def test_natsorted():
    chromname_tests = [
        {
            'input': ['2', '3', '4', 'm', 'x', '1', 'y'],
            'expected': ['1', '2', '3', '4', 'x', 'y', 'm']
        },
        {
            'input': ['chr1', 'chr4', 'chr5', 'chr2',
                      'chr3', 'chrMT', 'chrY', 'chrX'],
            'expected': ['chr1', 'chr2', 'chr3', 'chr4',
                         'chr5', 'chrX', 'chrY', 'chrMT']
        }
    ]

    for test in chromname_tests:
        sorted_output = hgbi.natsorted(test['input'])
        assert sorted_output == test['expected'],\
            'Sorted output was %s\nExpected: %s' \
            % (sorted_output, test['expected'])

@@ -87,81 +87,9 @@
 e64%0A
-import pytest%0A%0A%0A@pytest.mark.parametrize(%22engine%22, %5B%22pybbi%22, %22pybigwig%22%5D)
+%0A
 %0Adef
@@ -111,14 +111,8 @@
 les(
-engine
 ):%0A 

Remove engine fixture for now