#!/usr/bin/env python
# -*- coding: UTF-8 -*-

from setuptools import setup

import os.path

scripts = ['bpln', 'cbpn', 'mcmcbpn', 'sabpn']
scripts = [os.path.sep.join(('scripts', script)) for script in scripts]

setup(
    name='BiologicalProcessNetworks',
    version='0.1.0',
    author='Christopher D. Lasher',
    author_email='chris.lasher@gmail.com',
    install_requires=[
        'bitarray',
        'ConflictsOptionParser',
        'ConvUtils',
        'fisher',
        'networkx>=1.0',
        'numpy',
        'scipy'
    ],
    packages=['bpn', 'bpn.mcmc', 'bpn.tests'],
    scripts=scripts,
    url='http://pypi.python.org/pypi/BiologicalProcessNetworks',
    license='MIT License',
    classifiers=[
        'Development Status :: 3 - Alpha',
        'Intended Audience :: Science/Research',
        'License :: OSI Approved :: MIT License',
        'Operating System :: OS Independent',
        'Programming Language :: Python :: 2.6',
        'Programming Language :: Python :: 2.7',
        'Topic :: Scientific/Engineering :: Bio-Informatics'
    ],
    description=("Determine connections between biological processes."),
    long_description=open('README.rst').read(),
)

@@ -268,13 +268,13 @@
 on='
-0.
 1.0
+a1
 ',%0A 
@@ -1085,17 +1085,28 @@
 n=(%22
-Determine
+Identify significant
  con
@@ -1122,16 +1122,31 @@
 between 
+%22%0A            %22
 biologic
@@ -1157,16 +1157,48 @@
 rocesses
+ using gene interaction networks
 .%22),%0A   

Make this the alpha release of 1.0.