read_config: Cleaned up read_parameters. Was not dropping some __comment__ portions in the json files that were read. Also, did not have a simple structure for catching commented lines. Now, it is simple, clean, and is working fine.
read_config: Cleaned up read_parameters. Was not dropping some __comment__ portions in the json files that were read. Also, did not have a simple structure for catching commented lines. Now, it is simple, clean, and is working fine.

jakirkham/nanshe,jakirkham/nanshe,nanshe-org/nanshe,nanshe-org/nanshe,DudLab/nanshe,DudLab/nanshe