added cdna=>0/1 to input_id/parameters hardcoded the phyml parameter options
added cdna=>0/1 to input_id/parameters
hardcoded the phyml parameter options

kumarsaurabh20/ensembl-compara,etapanari/ensembl-compara,Ensembl/ensembl-compara,ckongEbi/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara,dbolser-ebi/ensembl-compara,danstaines/ensembl-compara,dbolser-ebi/ensembl-compara,ckongEbi/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,dbolser-ebi/ensembl-compara,danstaines/ensembl-compara,etapanari/ensembl-compara,danstaines/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara,etapanari/ensembl-compara,etapanari/ensembl-compara,ckongEbi/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara