Updated example section
Updated example section

I had trouble reading/following the example section (esp. w.r.t. paired end and split end reads). I think breaking apart the comments and code makes it more readable.
glebkuznetsov/lumpy-sv,arq5x/lumpy-sv,glebkuznetsov/lumpy-sv,glebkuznetsov/lumpy-sv,cc2qe/lumpy-sv,hall-lab/lumpy-sv,cc2qe/lumpy-sv,hall-lab/lumpy-sv,cc2qe/lumpy-sv,arq5x/lumpy-sv,glebkuznetsov/lumpy-sv,cc2qe/lumpy-sv,hall-lab/lumpy-sv,arq5x/lumpy-sv,arq5x/lumpy-sv,cc2qe/lumpy-sv,glebkuznetsov/lumpy-sv,hall-lab/lumpy-sv,arq5x/lumpy-sv,hall-lab/lumpy-sv