[ENH] Managed EmbeddedScoringMatrix on index
[ENH] Managed EmbeddedScoringMatrix on index

Add option to set EmbeddedScoringMatrix on advanced options of index

SALSA-W/M-SALSA,SALSA-W/M-SALSA,SALSA-W/M-SALSA,SALSA-W/M-SALSA,SALSA-W/M-SALSA