Separate out the actual work for FastqToSam so an outside caller can directly pass in FastqReaders
Separate out the actual work for FastqToSam so an outside caller can directly pass in FastqReaders

annkupi/picard,alecw/picard,alecw/picard,annkupi/picard,nh13/picard,alecw/picard,alecw/picard,broadinstitute/picard,annkupi/picard,broadinstitute/picard,broadinstitute/picard,annkupi/picard,nh13/picard,broadinstitute/picard,nh13/picard,nh13/picard,broadinstitute/picard