tophat summary clashed with rsem for single/paired (#172)
tophat summary clashed with rsem for single/paired (#172)

* tophat summary clashed with rsem for single/paired

* switching tophat search for summary

* switching tophat search for summary

* pcr dups

UMMS-Biocore/dolphin-tools,UMMS-Biocore/dolphin-tools,nephantes/dolphin-tools,nephantes/dolphin-tools,UMMS-Biocore/dolphin-tools,nephantes/dolphin-tools