using CoGe::Accessory::SynMap_report to parse and order contigs, updated output so that it is broken out by chromosomes in reference set and also now includes an unknown chromosome containing all the remaining pieces that weren't placed.
using CoGe::Accessory::SynMap_report to parse and order contigs, updated output so that it is broken out by chromosomes in reference set and also now includes an unknown chromosome containing all the remaining pieces that weren't placed.

LyonsLab/coge,asherkhb/coge,asherkhb/coge,asherkhb/coge,asherkhb/coge,LyonsLab/coge,asherkhb/coge,asherkhb/coge,LyonsLab/coge,asherkhb/coge,asherkhb/coge,LyonsLab/coge,LyonsLab/coge,asherkhb/coge,LyonsLab/coge,LyonsLab/coge,LyonsLab/coge,LyonsLab/coge