Increased verbosity and changed count behavior
Increased verbosity and changed count behavior

* output in verbose mode is now more informative
* spliced reads in counting mode are no longer filtered (does not effect
  filters in augmentation mode)
* reduced rproc requirements

warrenmcg/spladder,warrenmcg/spladder,warrenmcg/spladder,warrenmcg/spladder,warrenmcg/spladder