Lost gene inference, add pseudogene handling
Lost gene inference, add pseudogene handling

standage/AEGeAn,standage/AEGeAn,standage/AEGeAn,BrendelGroup/AEGeAn,standage/AEGeAn,BrendelGroup/AEGeAn,BrendelGroup/AEGeAn,BrendelGroup/AEGeAn