[gae.py] Use "gcloud beta app deploy" when app_engine_apis: true.
[gae.py] Use "gcloud beta app deploy" when app_engine_apis: true.

This is a prerequisite for using bundled GAE services from GAE second
gen.

R=40f3d43a28ebae3cb819288542e1c84d73d962d5@chromium.org

Change-Id: Icde014c4a21d6e29b01ac47c9e635ee85a4eb3e5
Reviewed-on: https://chromium-review.googlesource.com/c/infra/luci/luci-py/+/3252396
Reviewed-by: Robbie Iannucci <40f3d43a28ebae3cb819288542e1c84d73d962d5@chromium.org>
Commit-Queue: Vadim Shtayura <9f116ddb1b24f6fc1916a676eb17161b6c07dfc1@chromium.org>

luci/luci-py,luci/luci-py,luci/luci-py,luci/luci-py