Update run.sh to use JAVA_OPTS instead of hard-coded -D options
Update run.sh to use JAVA_OPTS instead of hard-coded -D options

cowmoo/cromwell,broadinstitute/cromwell,ohsu-comp-bio/cromwell,broadinstitute/cromwell,ohsu-comp-bio/cromwell,dgtester/cromwell,dgtester/cromwell,ohsu-comp-bio/cromwell,broadinstitute/cromwell,cowmoo/cromwell,broadinstitute/cromwell,dgtester/cromwell,cowmoo/cromwell,broadinstitute/cromwell