Bugfix for mapping pipeline with tophat1 Tophat1 uses builtin function 'map()' which is overwritten by empty dummy map function that specifies a pipeline option. Changed dummy function map() to map_only().
Bugfix for mapping pipeline with tophat1
Tophat1 uses builtin function 'map()' which is overwritten by empty dummy map function that specifies a pipeline option. Changed dummy function map() to map_only().

CGATOxford/CGATPipelines,CGATOxford/CGATPipelines,AntonioJBT/CGATPipeline_core,AntonioJBT/CGATPipeline_core,AntonioJBT/CGATPipeline_core,CGATOxford/CGATPipelines,CGATOxford/CGATPipelines,CGATOxford/CGATPipelines,AntonioJBT/CGATPipeline_core