Several small changes to TreeLoggerParser that structure it in a way that allows subclasses to use much of its functionality without reimplementing or copying code. --------------- Adding a new model of hidden linkage among reads in a metagenomic dataset.  The model and its application to metagenomic datasets is described in a manuscript in preparation by Aaron Darling and Jonathan Eisen.  This is one part of commit phase 2.  
Several small changes to TreeLoggerParser that structure it in a way that allows subclasses to use much of its functionality without reimplementing or copying code.
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Adding a new model of hidden linkage among reads in a metagenomic dataset.  The model and its application to metagenomic datasets is described in a manuscript in preparation by Aaron Darling and Jonathan Eisen.  This is one part of commit phase 2.  
luminwin/beast-mcmc,luminwin/beast-mcmc,luminwin/beast-mcmc,luminwin/beast-mcmc,luminwin/beast-mcmc