Added some documentation for the nonOptions which I had previously forgotten.
Added some documentation for the nonOptions which I had previously
forgotten.

copasi/COPASI,jonasfoe/COPASI,copasi/COPASI,copasi/COPASI,jonasfoe/COPASI,jonasfoe/COPASI,jonasfoe/COPASI,copasi/COPASI,jonasfoe/COPASI,copasi/COPASI,copasi/COPASI,jonasfoe/COPASI,jonasfoe/COPASI,copasi/COPASI,jonasfoe/COPASI,copasi/COPASI,copasi/COPASI,jonasfoe/COPASI