Added .fq filename format to formatPaireFileNames() function in start.sh.
Added .fq filename format to formatPaireFileNames() function in start.sh.

benranco/SNPpipeline,benranco/SNPpipeline,benranco/SNPpipeline,benranco/SNPpipeline,benranco/SNPpipeline,benranco/SNPpipeline,benranco/SNPpipeline,benranco/SNPpipeline,benranco/SNPpipeline