start to implement clean wait to stop in initialization S/R.
start to implement clean wait to stop in initialization S/R.

altMITgcm/MITgcm66h,altMITgcm/MITgcm66h,altMITgcm/MITgcm66h,altMITgcm/MITgcm66h,altMITgcm/MITgcm66h,altMITgcm/MITgcm66h,altMITgcm/MITgcm66h,altMITgcm/MITgcm66h