Modified AHRD template to now alter score_weight parameters based on the BLAST program being run (blastp or blastx). Also added new commandline option to specify blast program.
Modified AHRD template to now alter score_weight parameters based on the
BLAST program being run (blastp or blastx). Also added new commandline option to
specify blast program.

sgordon007/jcvi_062915,tanghaibao/jcvi