added options for specifying number of forks, and pausing after a new genome is loaded from the command line
added options for specifying number of forks, and pausing after a new genome is loaded from the command line

asherkhb/coge,LyonsLab/coge,asherkhb/coge,asherkhb/coge,LyonsLab/coge,asherkhb/coge,LyonsLab/coge,LyonsLab/coge,LyonsLab/coge,LyonsLab/coge,asherkhb/coge,LyonsLab/coge,LyonsLab/coge,asherkhb/coge,asherkhb/coge,LyonsLab/coge,asherkhb/coge,asherkhb/coge