This is a draft of the improved and prettified pipeline. It may not yet compile, but Kiran is taking over adding a few more things as I finish up other tasks.
This is a draft of the improved and prettified pipeline. It may not yet compile, but Kiran is taking over adding a few more things as I finish up other tasks.

git-svn-id: 4561c0a8f080806b19201efb9525134c00b76d40@5248 348d0f76-0448-11de-a6fe-93d51630548a

iontorrent/Torrent-Variant-Caller-stable,iontorrent/Torrent-Variant-Caller-stable,iontorrent/Torrent-Variant-Caller-stable,iontorrent/Torrent-Variant-Caller-stable,iontorrent/Torrent-Variant-Caller-stable,iontorrent/Torrent-Variant-Caller-stable,iontorrent/Torrent-Variant-Caller-stable,iontorrent/Torrent-Variant-Caller-stable