Resynced signature of "findOverlaps" methods for GappedAlignments objects with latest changes in BSgenome (where the "findOverlaps" methods for GRanges/GRangesList objects are defined).
Resynced signature of "findOverlaps" methods for GappedAlignments objects
with latest changes in BSgenome (where the "findOverlaps" methods for
GRanges/GRangesList objects are defined).


git-svn-id: d94a30e01ab1b9ad8a77470aceaf61700f3c3450@44849 bc3139a8-67e5-0310-9ffc-ced21a209358

mtmorgan/Rsamtools,nhayden/Rsamtools,mtmorgan/Rsamtools,nhayden/Rsamtools,mtmorgan/Rsamtools,jimhester/Rsamtools,nhayden/Rsamtools,jimhester/Rsamtools,nhayden/Rsamtools,jimhester/Rsamtools,jimhester/Rsamtools,mtmorgan/Rsamtools