added code to post process family_members and copy cigar_lines between duplicate sequences (only run one of the sequence copies in muscle, but need to set cigar_line of all copies)
added code to post process family_members and copy cigar_lines between duplicate sequences
(only run one of the sequence copies in muscle, but need to set cigar_line of all copies)

etapanari/ensembl-compara,ckongEbi/ensembl-compara,kumarsaurabh20/ensembl-compara,dbolser-ebi/ensembl-compara,Ensembl/ensembl-compara,etapanari/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,kumarsaurabh20/ensembl-compara,kumarsaurabh20/ensembl-compara,etapanari/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,ckongEbi/ensembl-compara,dbolser-ebi/ensembl-compara,dbolser-ebi/ensembl-compara,etapanari/ensembl-compara,danstaines/ensembl-compara,ckongEbi/ensembl-compara,Ensembl/ensembl-compara,kumarsaurabh20/ensembl-compara,danstaines/ensembl-compara