updated DEPRECATED.md
updated DEPRECATED.md

james-monkeyshines/ensembl,Ensembl/ensembl,james-monkeyshines/ensembl,Ensembl/ensembl,muffato/ensembl,james-monkeyshines/ensembl,muffato/ensembl,james-monkeyshines/ensembl,Ensembl/ensembl,muffato/ensembl,muffato/ensembl,Ensembl/ensembl