create a BAM from local assemblies instead of a SAM and left align indels in the given BAM.
create a BAM from local assemblies instead of a SAM and left align indels in the given BAM.

EichlerLab/pacbio_variant_caller,EichlerLab/pacbio_variant_caller,EichlerLab/pacbio_variant_caller,EichlerLab/pacbio_variant_caller,EichlerLab/pacbio_variant_caller