Making a tiny change to TreeLogger API so that the tree can be manipulated by other classes.  This gets used by the HiddenLinkageTreeLogger  to avoid duplicating all the code in TreeLogger. --------------- Adding a new model of hidden linkage among reads in a metagenomic dataset.  The model and its application to metagenomic datasets is described in a manuscript in preparation by Aaron Darling and Jonathan Eisen.  This is one part of commit phase 2.  
Making a tiny change to TreeLogger API so that the tree can be manipulated by other classes.  This gets used by the HiddenLinkageTreeLogger  to avoid duplicating all the code in TreeLogger.
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Adding a new model of hidden linkage among reads in a metagenomic dataset.  The model and its application to metagenomic datasets is described in a manuscript in preparation by Aaron Darling and Jonathan Eisen.  This is one part of commit phase 2.  
JifengJiang/beast-mcmc,JifengJiang/beast-mcmc,JifengJiang/beast-mcmc,JifengJiang/beast-mcmc,JifengJiang/beast-mcmc