Better modification extraction and other fixes
Better modification extraction and other fixes

sorgerlab/belpy,pvtodorov/indra,pvtodorov/indra,bgyori/indra,sorgerlab/indra,bgyori/indra,jmuhlich/indra,pvtodorov/indra,johnbachman/indra,sorgerlab/belpy,sorgerlab/indra,johnbachman/indra,sorgerlab/indra,jmuhlich/indra,johnbachman/belpy,johnbachman/indra,bgyori/indra,sorgerlab/belpy,pvtodorov/indra,johnbachman/belpy,jmuhlich/indra,johnbachman/belpy