Changed color and logic for showing SNPs in bisulfite mode.  What we really need to do to show it correctly is make it conditional on our SNP caller output (VCF) from Bis-SNP.
Changed color and logic for showing SNPs in bisulfite mode.  What we really need to do to show it correctly is make it conditional on our SNP caller output (VCF) from Bis-SNP.

git-svn-id: b5cf87c434d9ee7c8f18865e4378c9faabe04646@1716 17392f64-ead8-4cea-ae29-09b3ab513800

itenente/igv,itenente/igv,itenente/igv,amwenger/igv,itenente/igv,godotgildor/igv,itenente/igv,amwenger/igv,amwenger/igv,godotgildor/igv,igvteam/igv,igvteam/igv,igvteam/igv,godotgildor/igv,amwenger/igv,godotgildor/igv,igvteam/igv,amwenger/igv,godotgildor/igv,igvteam/igv