Added a filename format option to the raw data input formats.
Added a filename format option to the raw data input formats.

benranco/SNPpipeline,benranco/SNPpipeline,benranco/SNPpipeline,benranco/SNPpipeline,benranco/SNPpipeline,benranco/SNPpipeline,benranco/SNPpipeline,benranco/SNPpipeline,benranco/SNPpipeline