Fix bug: Parse dots in the aligned sequence as gaps (used by 2X genomes) when getting the Mapper in condensed mode
Fix bug: Parse dots in the aligned sequence as gaps (used by 2X genomes) when getting the Mapper in condensed mode

kumarsaurabh20/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,ckongEbi/ensembl-compara,etapanari/ensembl-compara,etapanari/ensembl-compara,dbolser-ebi/ensembl-compara,ckongEbi/ensembl-compara,ckongEbi/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara,dbolser-ebi/ensembl-compara,etapanari/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,dbolser-ebi/ensembl-compara,etapanari/ensembl-compara,danstaines/ensembl-compara,kumarsaurabh20/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,kumarsaurabh20/ensembl-compara