MaxBin2: Modify reads/abunds to use repeat instead of multiple to support using collection (#4595)
MaxBin2: Modify reads/abunds to use repeat instead of multiple to support using collection (#4595)

* Modify reads/abunds to use repeat to support both individual and co-assembly

* Change the approach depending on the type of assembly
nekrut/tools-iuc,jj-umn/tools-iuc,nsoranzo/tools-iuc,nekrut/tools-iuc,nsoranzo/tools-iuc,gregvonkuster/tools-iuc,loraine-gueguen/tools-iuc,loraine-gueguen/tools-iuc,loraine-gueguen/tools-iuc,jj-umn/tools-iuc,nekrut/tools-iuc,loraine-gueguen/tools-iuc,nsoranzo/tools-iuc,pavanvidem/tools-iuc,gregvonkuster/tools-iuc,gregvonkuster/tools-iuc,nsoranzo/tools-iuc,loraine-gueguen/tools-iuc,pavanvidem/tools-iuc,nsoranzo/tools-iuc,pavanvidem/tools-iuc,galaxyproject/tools-iuc,nekrut/tools-iuc,loraine-gueguen/tools-iuc,nekrut/tools-iuc,galaxyproject/tools-iuc,pavanvidem/tools-iuc,pavanvidem/tools-iuc,jj-umn/tools-iuc,nekrut/tools-iuc,galaxyproject/tools-iuc,jj-umn/tools-iuc,loraine-gueguen/tools-iuc,galaxyproject/tools-iuc,galaxyproject/tools-iuc,galaxyproject/tools-iuc,gregvonkuster/tools-iuc,nsoranzo/tools-iuc,nekrut/tools-iuc,gregvonkuster/tools-iuc,jj-umn/tools-iuc,gregvonkuster/tools-iuc,nsoranzo/tools-iuc,pavanvidem/tools-iuc,gregvonkuster/tools-iuc,jj-umn/tools-iuc,galaxyproject/tools-iuc,jj-umn/tools-iuc,pavanvidem/tools-iuc