updated GFF processing to handle some edge cases where pseudogenes were children and not parents, and miRNAs were children of mRNA
updated GFF processing to handle some edge cases where pseudogenes were children and not parents, and miRNAs were children of mRNA

LyonsLab/coge,LyonsLab/coge,LyonsLab/coge,asherkhb/coge,asherkhb/coge,LyonsLab/coge,asherkhb/coge,asherkhb/coge,LyonsLab/coge,LyonsLab/coge,asherkhb/coge,asherkhb/coge,asherkhb/coge,asherkhb/coge,asherkhb/coge,LyonsLab/coge,LyonsLab/coge,LyonsLab/coge