Removed the tools from the pipeline to follow the example set by Javi with the mg-tool-api summer.py example
Removed the tools from the pipeline to follow the example set by Javi with the mg-tool-api summer.py example

Multiscale-Genomics/mg-process-fastq,Multiscale-Genomics/mg-process-fastq,Multiscale-Genomics/mg-process-fastq