Include deleted genomes in missing file check
Include deleted genomes in missing file check

LyonsLab/coge,LyonsLab/coge,asherkhb/coge,LyonsLab/coge,asherkhb/coge,LyonsLab/coge,asherkhb/coge,asherkhb/coge,LyonsLab/coge,LyonsLab/coge,LyonsLab/coge,LyonsLab/coge,asherkhb/coge,asherkhb/coge,asherkhb/coge,asherkhb/coge,LyonsLab/coge,asherkhb/coge