run_qc_pipeline.py: updates to QsubJob, QsubScript(), RunPipeline() and __main__ to make working directory explicit on a per-job basis.
run_qc_pipeline.py: updates to QsubJob, QsubScript(), RunPipeline() and __main__ to make
working directory explicit on a per-job basis.

fw1121/genomics,fw1121/genomics,fw1121/genomics,fw1121/genomics,fw1121/genomics