[Scripts] Revise run.py configuration key scheme
[Scripts] Revise run.py configuration key scheme

This also re-orders a line that has been at the wrong spot since the
feature's appearance in commit a47397199c30ac01533d2686cd430af472be1739.

CylonicRaider/Instant,CylonicRaider/Instant,CylonicRaider/Instant,CylonicRaider/Instant,CylonicRaider/Instant