use existing LR file in phase 1 if set
use existing LR file in phase 1 if set

trinityrnaseq/trinityrnaseq,g1o/trinityrnaseq,g1o/trinityrnaseq,g1o/trinityrnaseq,trinityrnaseq/trinityrnaseq,g1o/trinityrnaseq,trinityrnaseq/trinityrnaseq,g1o/trinityrnaseq,g1o/trinityrnaseq,trinityrnaseq/trinityrnaseq,g1o/trinityrnaseq,trinityrnaseq/trinityrnaseq,trinityrnaseq/trinityrnaseq,trinityrnaseq/trinityrnaseq,g1o/trinityrnaseq