Changes to make the notation for the likelihood function and covariance matrix consistent with the Theory manual. 
Changes to make the notation for the likelihood function and covariance matrix consistent with the Theory manual. 



git-svn-id: d5469d78598a82f75b3d1e6419ce8b4d1ddac974@3353 aa0779c3-6ec2-4b84-a212-a405c134cd8d

pemryan/DAKOTA,pemryan/DAKOTA,pemryan/DAKOTA,pemryan/DAKOTA,pemryan/DAKOTA,pemryan/DAKOTA,pemryan/DAKOTA