fix: engine: change file open and copy dict
fix: engine: change file open and copy dict

pearsonlab/nipype,dgellis90/nipype,iglpdc/nipype,sgiavasis/nipype,FCP-INDI/nipype,dgellis90/nipype,carolFrohlich/nipype,sgiavasis/nipype,pearsonlab/nipype,carolFrohlich/nipype,FCP-INDI/nipype,iglpdc/nipype,pearsonlab/nipype,mick-d/nipype,iglpdc/nipype,dgellis90/nipype,FCP-INDI/nipype,dgellis90/nipype,iglpdc/nipype,carolFrohlich/nipype,mick-d/nipype,sgiavasis/nipype,sgiavasis/nipype,mick-d/nipype,carolFrohlich/nipype,FCP-INDI/nipype,mick-d/nipype,pearsonlab/nipype