Add exclude_dirs and include_dirs to filtered_walk
Add exclude_dirs and include_dirs to filtered_walk

SciLifeLab/scilifelab,senthil10/scilifelab,SciLifeLab/scilifelab,jun-wan/scilifelab,jun-wan/scilifelab,senthil10/scilifelab,jun-wan/scilifelab,kate-v-stepanova/scilifelab,kate-v-stepanova/scilifelab,SciLifeLab/scilifelab,SciLifeLab/scilifelab,jun-wan/scilifelab,kate-v-stepanova/scilifelab,senthil10/scilifelab,kate-v-stepanova/scilifelab,senthil10/scilifelab