Check have either GenomicAlignTrees or GenomicAlignBlocks in new method. Updated mlss->species_set to mlss->species_set_obj->genome_dbs. Added check in _add_GenomicAlign_to_a_Slice if we have no sequence. In _choose_underlying_Slice, use the hash of species specific slices to find the correct slice; this gave a large speed up.
Check have either GenomicAlignTrees or GenomicAlignBlocks in new method. Updated mlss->species_set to mlss->species_set_obj->genome_dbs. Added check in _add_GenomicAlign_to_a_Slice if we have no sequence. In _choose_underlying_Slice, use the hash of species specific slices to find the correct slice; this gave a large speed up.

danstaines/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,ckongEbi/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,etapanari/ensembl-compara,ckongEbi/ensembl-compara,kumarsaurabh20/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara,kumarsaurabh20/ensembl-compara,Ensembl/ensembl-compara,ckongEbi/ensembl-compara,etapanari/ensembl-compara,dbolser-ebi/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,dbolser-ebi/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,kumarsaurabh20/ensembl-compara,danstaines/ensembl-compara,etapanari/ensembl-compara,dbolser-ebi/ensembl-compara,danstaines/ensembl-compara,etapanari/ensembl-compara