Revised batch-alignment script using new Toil syntax
Revised batch-alignment script using new Toil syntax

Untested — created ticket to test (#18, toil-scripts)

jpfeil/toil-scripts,BD2KGenomics/toil-scripts,fnothaft/toil-scripts,fnothaft/toil-scripts,jpfeil/toil-scripts,BD2KGenomics/toil-scripts