get rid of some occurences of runReader.  patternData in Reader.
get rid of some occurences of runReader.  patternData in Reader.

JacquesCarette/literate-scientific-software,JacquesCarette/literate-scientific-software,JacquesCarette/literate-scientific-software,JacquesCarette/literate-scientific-software,JacquesCarette/literate-scientific-software,JacquesCarette/literate-scientific-software,JacquesCarette/literate-scientific-software