Added ability to run translated blat jobs through the hive system. Allow 'reference_collection_name' and 'non_reference_collection' instead of 'target_collection_name' and 'query_collection_name'. No longer support 'options' for FilterDuplicates (was either 'all' or 'in_chunk_overlaps'). Now always check for idential matches across the whole dnafrag ('all') and remove edge artefacts in overlap regions only ('in_chunk_overlaps').
Added ability to run translated blat jobs through the hive system. Allow 'reference_collection_name' and 'non_reference_collection' instead of 'target_collection_name' and 'query_collection_name'. No longer support 'options' for FilterDuplicates (was either 'all' or 'in_chunk_overlaps'). Now always check for idential matches across the whole dnafrag ('all') and remove edge artefacts in overlap regions only ('in_chunk_overlaps').

danstaines/ensembl-compara,ckongEbi/ensembl-compara,Ensembl/ensembl-compara,ckongEbi/ensembl-compara,kumarsaurabh20/ensembl-compara,kumarsaurabh20/ensembl-compara,dbolser-ebi/ensembl-compara,Ensembl/ensembl-compara,kumarsaurabh20/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,Ensembl/ensembl-compara,danstaines/ensembl-compara,etapanari/ensembl-compara,danstaines/ensembl-compara,etapanari/ensembl-compara,etapanari/ensembl-compara,kumarsaurabh20/ensembl-compara,etapanari/ensembl-compara,dbolser-ebi/ensembl-compara,ckongEbi/ensembl-compara,Ensembl/ensembl-compara,dbolser-ebi/ensembl-compara