Fix for non-chromosome seq_regions in whole genome mode
Fix for non-chromosome seq_regions in whole genome mode

Ensembl/ensembl-variation,dbolser-ebi/ensembl-variation,dbolser/ensembl-variation,willmclaren/ensembl-variation,willmclaren/ensembl-variation,Ensembl/ensembl-variation,dbolser/ensembl-variation,dbolser/ensembl-variation,dbolser-ebi/ensembl-variation,dbolser-ebi/ensembl-variation,dbolser/ensembl-variation,Ensembl/ensembl-variation,willmclaren/ensembl-variation,Ensembl/ensembl-variation,willmclaren/ensembl-variation,willmclaren/ensembl-variation,Ensembl/ensembl-variation