rename mites to be sequential instead of taking the TIR number; add custom role-based method for remove repeat regions and remove previous method; adjust mite renaming method to keep track of element counts and follow a more sensible logic for renaming elements
rename mites to be sequential instead of taking the TIR number; add custom role-based method for remove repeat regions and remove previous method; adjust mite renaming method to keep track of element counts and follow a more sensible logic for renaming elements

sestaton/tephra,sestaton/tephra,sestaton/tephra