(1) Change suffix in loadPicardMetrics from "alignstats" to "stats" - this was causing an assertion error with the RNA seq pipeline. It may be better to change the relevent function in the RNA seq pipeline instead?
(1) Change suffix in loadPicardMetrics from "alignstats" to "stats" - this was causing an assertion error with the RNA seq pipeline. It may be better to change the relevent function in the RNA seq pipeline instead?

(2) Modify a call to loadPicardMetrics to be single or paired end specific depending on a parameter in the pipeline_x.ini file. Specifically the issue is that the collection of insert_size_metrics fails for single-end data.

AntonioJBT/CGATPipeline_core,CGATOxford/CGATPipelines,AntonioJBT/CGATPipeline_core,AntonioJBT/CGATPipeline_core,CGATOxford/CGATPipelines,AntonioJBT/CGATPipeline_core,CGATOxford/CGATPipelines,CGATOxford/CGATPipelines,CGATOxford/CGATPipelines