Account for new directories in align_and_estimate_abundance
Account for new directories in align_and_estimate_abundance

Also loosen sequence counts for InSilicoReadNormalization

trinityrnaseq/trinityrnaseq,g1o/trinityrnaseq,g1o/trinityrnaseq,trinityrnaseq/trinityrnaseq,g1o/trinityrnaseq,g1o/trinityrnaseq,g1o/trinityrnaseq,g1o/trinityrnaseq,trinityrnaseq/trinityrnaseq,g1o/trinityrnaseq,trinityrnaseq/trinityrnaseq,trinityrnaseq/trinityrnaseq,trinityrnaseq/trinityrnaseq,trinityrnaseq/trinityrnaseq,g1o/trinityrnaseq