Completed molecule generation in generate3Dgeometry
Completed molecule generation in generate3Dgeometry

Checked the RMG bond order and added the corresponding rdkit
bond order. Now need to embed the molecule to generate the 
3D structure.
nickvandewiele/RMG-Py,chatelak/RMG-Py,pierrelb/RMG-Py,enochd/RMG-Py,nyee/RMG-Py,nyee/RMG-Py,faribas/RMG-Py,KEHANG/RMG-Py,KEHANG/RMG-Py,chatelak/RMG-Py,comocheng/RMG-Py,comocheng/RMG-Py,nickvandewiele/RMG-Py,pierrelb/RMG-Py,faribas/RMG-Py,enochd/RMG-Py