Edited bam_vs_bed.py so that when it calls intersectBed, it sorts the input bed and then uses the efficient -sorted algorithm. This reduces memory usage from 45GB -> 200MB in one case
Edited bam_vs_bed.py so that when it calls intersectBed, it sorts the input bed and then uses the efficient -sorted algorithm. This reduces memory usage from 45GB -> 200MB in one case

CGATOxford/CGATPipelines,AntonioJBT/CGATPipeline_core,CGATOxford/CGATPipelines,AntonioJBT/CGATPipeline_core,AntonioJBT/CGATPipeline_core,CGATOxford/CGATPipelines,CGATOxford/CGATPipelines,CGATOxford/CGATPipelines,AntonioJBT/CGATPipeline_core