Added setup_cs.py (cs for conformational search)
Added setup_cs.py (cs for conformational search)

Made a class, MyComUtil, which essentially just adds a function to
schrodinger.application.macromodel.utils.ComUtil.

Right now, that function, my_mcmm, just adds the settings I want for a
conformational search. I still have to add in the ability to set the atoms for
COMP, CHIG, TORS and RCA4 from the input .mae file.

arosale4/q2mm,ericchansen/q2mm,ericchansen/q2mm,arosale4/q2mm,Q2MM/q2mm,Q2MM/q2mm