Fixing bugs with default resource allocation
Fixing bugs with default resource allocation

Couldn't have two-deep variable names when neither are set. Added parentheses for good measure. Fixed STAR index issues.

SciLifeLab/NGI-RNAseq,Galithil/NGI-RNAseq,Galithil/NGI-RNAseq,SciLifeLab/NGI-RNAseq,ewels/NGI-RNAseq,Hammarn/NGI-RNAseq,Hammarn/NGI-RNAseq,SciLifeLab/NGI-RNAseq,ewels/NGI-RNAseq,ewels/NGI-RNAseq,Hammarn/NGI-RNAseq,SciLifeLab/NGI-RNAseq,Galithil/NGI-RNAseq,Hammarn/NGI-RNAseq,Galithil/NGI-RNAseq,ewels/NGI-RNAseq,Hammarn/NGI-RNAseq,ewels/NGI-RNAseq,SciLifeLab/NGI-RNAseq