Added the declaration for SetPDBAtoms.  I may be able to use the permuted and originals as my mollookup and the indices into the original atoms objects, respectively.
Added the declaration for SetPDBAtoms.  I may be able to use the permuted and originals as my mollookup and the indices into the original atoms objects, respectively.

GOMC-WSU/GOMC,GOMC-WSU/GOMC,GOMC-WSU/GOMC,GOMC-WSU/GOMC,GOMC-WSU/GOMC