added comments, fixed typos in comments, and added flags to ignore a few resharper suggested optimizations.
added comments, fixed typos in comments, and added flags to ignore a few resharper suggested optimizations.

PNNL-Comp-Mass-Spec/Atreyu,PNNL-Comp-Mass-Spec/Atreyu,PNNL-Comp-Mass-Spec/Atreyu