Fixed: Index counts is not equal to read counts
Fixed: Index counts is not equal to read counts

SciLifeLab/scilifelab,jun-wan/scilifelab,jun-wan/scilifelab,SciLifeLab/scilifelab,SciLifeLab/scilifelab,senthil10/scilifelab,senthil10/scilifelab,SciLifeLab/scilifelab,senthil10/scilifelab,kate-v-stepanova/scilifelab,jun-wan/scilifelab,senthil10/scilifelab,kate-v-stepanova/scilifelab,kate-v-stepanova/scilifelab,jun-wan/scilifelab,kate-v-stepanova/scilifelab