added testcase for transformed alignmentRegion
added testcase for transformed alignmentRegion

AliTVTeam/AliTV,BioInf-Wuerzburg/AliTV,BioInf-Wuerzburg/AliTV,BioInf-Wuerzburg/AliTV,AliTVTeam/AliTV,BioInf-Wuerzburg/AliTV,BioInf-Wuerzburg/AliTV,BioInf-Wuerzburg/AliTV