pipeline_rnaseqdiffexpression.py - changed regex in buildMaskGtf to recognise contigs "chrMT" or "MT" in addition to "chrM". Changed exon_counts.tsv.gz to be fourth element in TARGETS_DE in plotRNASEQTagData
pipeline_rnaseqdiffexpression.py - changed regex in buildMaskGtf to recognise contigs "chrMT" or "MT" in addition to "chrM". Changed exon_counts.tsv.gz to be fourth element in TARGETS_DE in plotRNASEQTagData

AntonioJBT/CGATPipeline_core,CGATOxford/CGATPipelines,AntonioJBT/CGATPipeline_core,CGATOxford/CGATPipelines,AntonioJBT/CGATPipeline_core,CGATOxford/CGATPipelines,AntonioJBT/CGATPipeline_core,CGATOxford/CGATPipelines,CGATOxford/CGATPipelines