changes to anat_to_mni function, which is still incomplete. the reoriented anatomicals are saved in the anat_dir, not /tmp, and the commands are printed for debugging use. in future the anatomicals may be saved to /tmp again, since the reoriented versions are not necessary for getting the correct coordinates in the identity transform
changes to anat_to_mni function, which is still incomplete. the reoriented anatomicals are saved in the anat_dir, not /tmp, and the commands are printed for debugging use. in future the anatomicals may be saved to /tmp again, since the reoriented versions are not necessary for getting the correct coordinates in the identity transform

smerdis/pycortex,smerdis/pycortex,smerdis/pycortex,smerdis/pycortex,smerdis/pycortex