added functionality to function update_params to change seqyence type and masked
added functionality to function update_params to change seqyence type and masked

asherkhb/coge,asherkhb/coge,LyonsLab/coge,LyonsLab/coge,LyonsLab/coge,asherkhb/coge,asherkhb/coge,asherkhb/coge,LyonsLab/coge,asherkhb/coge,LyonsLab/coge,asherkhb/coge,LyonsLab/coge,LyonsLab/coge,LyonsLab/coge,LyonsLab/coge,asherkhb/coge,asherkhb/coge